Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0677240 | XP_013443735.1 | 98.209 | 335 | 6 | 0 | 1 | 335 | 1 | 335 | 0.0 | 681 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0677240 | sp|Q6AWY4|GRF5_ORYSJ | 44.380 | 347 | 149 | 8 | 13 | 325 | 12 | 348 | 1.08e-85 | 266 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0677240 | A0A072TW62 | 98.209 | 335 | 6 | 0 | 1 | 335 | 1 | 335 | 0.0 | 681 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0677240 | TF | GRF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0638270 | Msa0677240 | 0.997983 | 1.936936e-253 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0677240 | MtrunA17_Chr4g0021261 | 98.209 | 335 | 6 | 0 | 1 | 335 | 1 | 335 | 0.0 | 681 |
| Msa0677240 | MtrunA17_Chr4g0070591 | 39.516 | 372 | 158 | 14 | 17 | 331 | 1 | 362 | 1.24e-60 | 199 |
| Msa0677240 | MtrunA17_Chr2g0300511 | 40.331 | 362 | 151 | 14 | 25 | 335 | 7 | 354 | 2.04e-57 | 190 |
| Msa0677240 | MtrunA17_Chr8g0343881 | 68.908 | 119 | 35 | 2 | 16 | 132 | 1 | 119 | 4.37e-49 | 168 |
| Msa0677240 | MtrunA17_Chr5g0409471 | 70.370 | 108 | 21 | 3 | 25 | 132 | 16 | 112 | 7.83e-47 | 162 |
| Msa0677240 | MtrunA17_Chr7g0265931 | 61.607 | 112 | 40 | 3 | 26 | 135 | 79 | 189 | 8.33e-39 | 142 |
| Msa0677240 | MtrunA17_Chr1g0152191 | 56.034 | 116 | 46 | 2 | 25 | 135 | 144 | 259 | 1.65e-36 | 140 |
| Msa0677240 | MtrunA17_Chr3g0127641 | 46.429 | 140 | 57 | 3 | 2 | 141 | 90 | 211 | 1.01e-30 | 122 |
| Msa0677240 | MtrunA17_Chr8g0351521 | 41.611 | 149 | 69 | 3 | 14 | 161 | 43 | 174 | 1.11e-24 | 104 |
| Msa0677240 | MtrunA17_Chr8g0351521 | 42.105 | 76 | 39 | 1 | 79 | 149 | 293 | 368 | 1.03e-12 | 68.9 |
| Msa0677240 | MtrunA17_Chr8g0351291 | 64.103 | 39 | 14 | 0 | 88 | 126 | 51 | 89 | 2.84e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0677240 | AT3G13960.1 | 64.220 | 109 | 38 | 1 | 25 | 132 | 16 | 124 | 2.16e-43 | 155 |
| Msa0677240 | AT2G36400.1 | 57.143 | 119 | 47 | 2 | 26 | 140 | 77 | 195 | 6.78e-41 | 148 |
| Msa0677240 | AT4G37740.1 | 52.055 | 146 | 47 | 5 | 25 | 155 | 164 | 301 | 2.84e-39 | 146 |
| Msa0677240 | AT2G06200.1 | 48.235 | 170 | 71 | 4 | 25 | 182 | 6 | 170 | 1.56e-38 | 138 |
| Msa0677240 | AT2G06200.2 | 48.235 | 170 | 71 | 4 | 25 | 182 | 45 | 209 | 2.54e-38 | 139 |
| Msa0677240 | AT3G52910.1 | 56.250 | 112 | 44 | 2 | 26 | 132 | 83 | 194 | 5.27e-37 | 137 |
| Msa0677240 | AT5G53660.1 | 39.634 | 164 | 71 | 3 | 11 | 174 | 49 | 184 | 1.92e-28 | 114 |
| Msa0677240 | AT4G24150.3 | 41.912 | 136 | 62 | 2 | 9 | 133 | 95 | 224 | 9.04e-26 | 107 |
| Msa0677240 | AT4G24150.2 | 44.275 | 131 | 66 | 3 | 9 | 133 | 133 | 262 | 1.62e-25 | 107 |
| Msa0677240 | AT4G24150.1 | 36.129 | 155 | 69 | 2 | 9 | 133 | 133 | 287 | 1.47e-23 | 102 |
| Msa0677240 | AT2G06200.3 | 51.000 | 100 | 42 | 2 | 85 | 182 | 4 | 98 | 2.19e-23 | 95.9 |
| Msa0677240 | AT2G45480.2 | 50.980 | 102 | 49 | 1 | 29 | 129 | 28 | 129 | 2.57e-20 | 90.5 |
| Msa0677240 | AT2G45480.1 | 50.980 | 102 | 49 | 1 | 29 | 129 | 26 | 127 | 1.08e-19 | 90.5 |
| Msa0677240 | AT2G45480.1 | 50.000 | 66 | 31 | 2 | 83 | 148 | 299 | 362 | 4.34e-13 | 70.5 |
| Msa0677240 | AT2G45480.3 | 50.980 | 102 | 49 | 1 | 29 | 129 | 28 | 129 | 1.11e-19 | 90.1 |
| Msa0677240 | AT2G45480.3 | 50.000 | 66 | 31 | 2 | 83 | 148 | 301 | 364 | 4.74e-13 | 70.5 |
Find 112 sgRNAs with CRISPR-Local
Find 246 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTTTGATCTTTAAATATA+TGG | 0.195661 | 4_4:+30041977 | Msa0677240:CDS |
| CCATTTGGTTTGGTTTGTTT+TGG | 0.202650 | 4_4:-30041700 | None:intergenic |
| CTTAGGCCATTCGCTGAAAA+AGG | 0.223874 | 4_4:-30044959 | None:intergenic |
| CGCTCACAGTACTTGGAGTC+TGG | 0.273319 | 4_4:-30043052 | None:intergenic |
| GTCCACCTTCTTCCCATAAA+AGG | 0.288851 | 4_4:-30042966 | None:intergenic |
| CAATACCTGTATTCTTTACT+TGG | 0.293844 | 4_4:-30043298 | None:intergenic |
| ATCTTTAAATATATGGTTGC+TGG | 0.294888 | 4_4:+30041984 | Msa0677240:CDS |
| AGTTACTTACAGGTAGGAAT+AGG | 0.318313 | 4_4:-30042086 | None:intergenic |
| AGCTTCTTTGCAGAAGCTTC+AGG | 0.320264 | 4_4:+30044736 | Msa0677240:CDS |
| ATCTATGTATCTATCTATCT+AGG | 0.323546 | 4_4:+30041588 | Msa0677240:five_prime_UTR |
| ATCTGCAACGGTATAATTAC+AGG | 0.327853 | 4_4:-30045175 | None:intergenic |
| TTTCCAGCTGTGACTCCATT+TGG | 0.337205 | 4_4:-30044777 | None:intergenic |
| TCAGTCCTCCTACATCTTCC+TGG | 0.350789 | 4_4:-30042995 | None:intergenic |
| GCCTGTGGAATCACAAACTA+TGG | 0.360463 | 4_4:+30043108 | Msa0677240:CDS |
| GTTCAAAATACTACAGGTTC+TGG | 0.363646 | 4_4:+30043229 | Msa0677240:CDS |
| CTCCTACATCTTCCTGGCTC+CGG | 0.374741 | 4_4:-30042989 | None:intergenic |
| AAGAAGGTGGACCCGGAGCC+AGG | 0.384375 | 4_4:+30042977 | Msa0677240:CDS |
| GAGTGAAAACTGGAATGAAT+AGG | 0.396151 | 4_4:-30042035 | None:intergenic |
| CAGGCTTTCTTGAACGGTTG+CGG | 0.396165 | 4_4:-30043090 | None:intergenic |
| CAGAGAGTCATGGTCTGGTT+TGG | 0.398433 | 4_4:+30044984 | Msa0677240:CDS |
| GGAAGAAAGAGAGTGAAAAC+TGG | 0.406980 | 4_4:-30042045 | None:intergenic |
| TCGGAAGGAACCATTTGGTT+TGG | 0.409213 | 4_4:-30041710 | None:intergenic |
| AGGACAAGATCAGGTGGAAC+AGG | 0.419490 | 4_4:-30042011 | None:intergenic |
| CATTTGTTGTGGGAATGTTC+TGG | 0.420078 | 4_4:-30043195 | None:intergenic |
| CATCTTGATACCATTCCCTA+TGG | 0.426022 | 4_4:+30043271 | Msa0677240:CDS |
| GACCATGACTCTCTGCTCTT+AGG | 0.426877 | 4_4:-30044976 | None:intergenic |
| CTTTGTCGGAAGGAACCATT+TGG | 0.431236 | 4_4:-30041715 | None:intergenic |
| ATTCCCACAACAAATGCATT+TGG | 0.432493 | 4_4:+30043202 | Msa0677240:CDS |
| TCCTACATCTTCCTGGCTCC+GGG | 0.435042 | 4_4:-30042988 | None:intergenic |
| AATGGTATCAAGATGATAAT+CGG | 0.435391 | 4_4:-30043263 | None:intergenic |
| CATGTGGCGCTCACAGTACT+TGG | 0.436354 | 4_4:-30043059 | None:intergenic |
| TTATCTAGTGAATATGGATC+TGG | 0.444100 | 4_4:+30044901 | Msa0677240:CDS |
| GACAAAGCTCGATCTGAGTC+TGG | 0.444559 | 4_4:+30041731 | Msa0677240:five_prime_UTR |
| AGACTCAGATCGAGCTTTGT+CGG | 0.451538 | 4_4:-30041729 | None:intergenic |
| GGTAGTGTTCAAAATACTAC+AGG | 0.456240 | 4_4:+30043223 | Msa0677240:CDS |
| TAGATAGATAGATACATAGA+TGG | 0.458886 | 4_4:-30041586 | None:intergenic |
| CTACCAAATGCATTTGTTGT+GGG | 0.462866 | 4_4:-30043205 | None:intergenic |
| GCTGGTGGCAGCAGCAGAGC+TGG | 0.465144 | 4_4:+30043166 | Msa0677240:CDS |
| GCCATAGTTTGTGATTCCAC+AGG | 0.467528 | 4_4:-30043109 | None:intergenic |
| TCTATGTATCTATCTATCTA+GGG | 0.468237 | 4_4:+30041589 | Msa0677240:five_prime_UTR |
| GTTACTTACAGGTAGGAATA+GGG | 0.471074 | 4_4:-30042085 | None:intergenic |
| TGTGGAGAATGCTGTTTGGT+TGG | 0.482035 | 4_4:-30045019 | None:intergenic |
| GGTGTTGATTGTGTTATGTC+CGG | 0.486230 | 4_4:-30041674 | None:intergenic |
| TTCTTTACTTGGAATCCCAT+AGG | 0.487767 | 4_4:-30043287 | None:intergenic |
| ATTCCACAGGCTTTCTTGAA+CGG | 0.489637 | 4_4:-30043096 | None:intergenic |
| TAATTGAACAGGTATCTTCA+AGG | 0.495908 | 4_4:+30044688 | Msa0677240:intron |
| AGGGTGGTGAAAGAAGTTAT+TGG | 0.499297 | 4_4:-30042066 | None:intergenic |
| TGAATAGGAAGGACAAGATC+AGG | 0.504204 | 4_4:-30042020 | None:intergenic |
| AGACAACAAGGGTCTCCAAA+TGG | 0.506033 | 4_4:+30044762 | Msa0677240:CDS |
| TCTCCAAATGGAGTCACAGC+TGG | 0.506829 | 4_4:+30044774 | Msa0677240:CDS |
| CGGTGAGATATATTCAAGTT+CGG | 0.507767 | 4_4:+30045110 | Msa0677240:CDS |
| GAGTTGTGGAGAATGCTGTT+TGG | 0.516076 | 4_4:-30045023 | None:intergenic |
| CCAAAACAAACCAAACCAAA+TGG | 0.517739 | 4_4:+30041700 | Msa0677240:five_prime_UTR |
| CGGAGGTGTAGGGATGATGA+TGG | 0.523373 | 4_4:+30041899 | Msa0677240:CDS |
| AGTAGTAACAACGGAGGTGT+AGG | 0.523982 | 4_4:+30041888 | Msa0677240:CDS |
| GGATTCCAAGTAAAGAATAC+AGG | 0.527798 | 4_4:+30043293 | Msa0677240:CDS |
| TCTTTACTTGGAATCCCATA+GGG | 0.529110 | 4_4:-30043286 | None:intergenic |
| GGAAGATGTAGGAGGACTGA+TGG | 0.529508 | 4_4:+30042998 | Msa0677240:CDS |
| TTATGGGAAGAAGGTGGACC+CGG | 0.531013 | 4_4:+30042970 | Msa0677240:CDS |
| TGGAGAAGCTGTGAAGGAAG+AGG | 0.531350 | 4_4:+30044921 | Msa0677240:CDS |
| AAGAGCAGAGAGTCATGGTC+TGG | 0.532638 | 4_4:+30044979 | Msa0677240:CDS |
| ACTACCAAATGCATTTGTTG+TGG | 0.537213 | 4_4:-30043206 | None:intergenic |
| CTTCACAGTGTCTCAGTGGC+AGG | 0.545162 | 4_4:+30041941 | Msa0677240:CDS |
| GGGATAATCACTTTGCAACA+TGG | 0.547856 | 4_4:-30044866 | None:intergenic |
| ACTTGGAATCCCATAGGGAA+TGG | 0.549125 | 4_4:-30043281 | None:intergenic |
| AGCTTCAGGAGGAGACAACA+AGG | 0.549332 | 4_4:+30044750 | Msa0677240:CDS |
| GAGAAGTCAGACGATGACAT+AGG | 0.553675 | 4_4:-30045063 | None:intergenic |
| GTCAGACGATGACATAGGAA+TGG | 0.557702 | 4_4:-30045058 | None:intergenic |
| GCTCACAGTACTTGGAGTCT+GGG | 0.561352 | 4_4:-30043051 | None:intergenic |
| ATACTAACATAGCATCCATC+CGG | 0.569488 | 4_4:+30041655 | Msa0677240:five_prime_UTR |
| ATCTTGATACCATTCCCTAT+GGG | 0.573222 | 4_4:+30043272 | Msa0677240:CDS |
| TCTTCAAGGTCTTAAATCTG+AGG | 0.573656 | 4_4:+30044702 | Msa0677240:CDS |
| TGGATCTGGAGAAGCTGTGA+AGG | 0.577779 | 4_4:+30044915 | Msa0677240:CDS |
| GGAGAAGCTGTGAAGGAAGA+GGG | 0.582664 | 4_4:+30044922 | Msa0677240:CDS |
| GTAGTAACAACGGAGGTGTA+GGG | 0.587459 | 4_4:+30041889 | Msa0677240:CDS |
| TTCTTTGCAGAAGCTTCAGG+AGG | 0.588543 | 4_4:+30044739 | Msa0677240:CDS |
| GGTAGTACAAGTATTTGACT+TGG | 0.595236 | 4_4:+30041622 | Msa0677240:five_prime_UTR |
| TCAGATCGAGCTTTGTCGGA+AGG | 0.597590 | 4_4:-30041725 | None:intergenic |
| GGATATTGAAAGTTGAGTTG+TGG | 0.598447 | 4_4:-30045037 | None:intergenic |
| GTGACATCGCTAACTGTCGC+TGG | 0.600432 | 4_4:+30043148 | Msa0677240:CDS |
| CTTCAAGGTCTTAAATCTGA+GGG | 0.600678 | 4_4:+30044703 | Msa0677240:CDS |
| TTGATTGTGTTATGTCCGGA+TGG | 0.601053 | 4_4:-30041670 | None:intergenic |
| AAAAGTATGAATAGCTCTGG+TGG | 0.606971 | 4_4:+30041861 | Msa0677240:exon |
| GAAAACTGGAATGAATAGGA+AGG | 0.611240 | 4_4:-30042031 | None:intergenic |
| GGGAGTTGAAGGGTACAATG+AGG | 0.616424 | 4_4:+30041552 | None:intergenic |
| CACCCTTCACAGTGTCTCAG+TGG | 0.621198 | 4_4:+30041937 | Msa0677240:CDS |
| GGTTGCGGCCACGATGCATG+TGG | 0.624950 | 4_4:-30043075 | None:intergenic |
| GGCCTAAGAGCAGAGAGTCA+TGG | 0.630587 | 4_4:+30044974 | Msa0677240:CDS |
| AGTATGAATAGCTCTGGTGG+TGG | 0.634205 | 4_4:+30041864 | Msa0677240:exon |
| CAACCGTTCAAGAAAGCCTG+TGG | 0.634486 | 4_4:+30043093 | Msa0677240:CDS |
| GCAACTCTAGTTGACATCAA+AGG | 0.643622 | 4_4:-30044808 | None:intergenic |
| CGGAGCCAGGAAGATGTAGG+AGG | 0.644072 | 4_4:+30042990 | Msa0677240:CDS |
| CTATGTATCTATCTATCTAG+GGG | 0.646979 | 4_4:+30041590 | Msa0677240:five_prime_UTR |
| ACCCGGAGCCAGGAAGATGT+AGG | 0.647650 | 4_4:+30042987 | Msa0677240:CDS |
| TGCCACTGAGACACTGTGAA+GGG | 0.647925 | 4_4:-30041939 | None:intergenic |
| GGAGGTGTAGGGATGATGAT+GGG | 0.651275 | 4_4:+30041900 | Msa0677240:CDS |
| ACAAGCTCTCAGTCGCCACA+CGG | 0.652578 | 4_4:+30045090 | Msa0677240:CDS |
| ACTGCTCTAGTTATCTGCAA+CGG | 0.658929 | 4_4:-30045187 | None:intergenic |
| ATAGGAAGGACAAGATCAGG+TGG | 0.667033 | 4_4:-30042017 | None:intergenic |
| CTGCCACTGAGACACTGTGA+AGG | 0.667964 | 4_4:-30041940 | None:intergenic |
| ACATCGCTAACTGTCGCTGG+TGG | 0.682168 | 4_4:+30043151 | Msa0677240:CDS |
| AGTCACAGCTGGAAAACACA+TGG | 0.689809 | 4_4:+30044785 | Msa0677240:CDS |
| CAAGGTCTTAAATCTGAGGG+TGG | 0.691896 | 4_4:+30044706 | Msa0677240:CDS |
| GCTTCAGGAGGAGACAACAA+GGG | 0.694886 | 4_4:+30044751 | Msa0677240:CDS |
| TATCAAGATGATAATCGGCA+CGG | 0.696821 | 4_4:-30043258 | None:intergenic |
| GGTGGTGGCAGTAGTAACAA+CGG | 0.699810 | 4_4:+30041879 | Msa0677240:CDS |
| CTTGAATATATCTCACCGTG+TGG | 0.701692 | 4_4:-30045105 | None:intergenic |
| TATGTATCTATCTATCTAGG+GGG | 0.702581 | 4_4:+30041591 | Msa0677240:five_prime_UTR |
| ACTTACAGGTAGGAATAGGG+TGG | 0.711937 | 4_4:-30042082 | None:intergenic |
| TGTGAGCGCCACATGCATCG+TGG | 0.717232 | 4_4:+30043067 | Msa0677240:CDS |
| GACAGTTAGCGATGTCACAG+TGG | 0.746561 | 4_4:-30043143 | None:intergenic |
| GGTGGCAGTAGTAACAACGG+AGG | 0.768714 | 4_4:+30041882 | Msa0677240:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATAAATAAATAAAAAATT+AGG | - | chr4_4:30042484-30042503 | None:intergenic | 0.0% |
| !! | AAAAATAATAATAACTTCAT+TGG | - | chr4_4:30042270-30042289 | None:intergenic | 10.0% |
| !!! | TTATATTAAAACAACTTTTT+TGG | + | chr4_4:30043920-30043939 | Msa0677240:intron | 10.0% |
| !! | GAGATAATAATTTAAGAAAA+TGG | + | chr4_4:30042563-30042582 | Msa0677240:intron | 15.0% |
| !!! | TTTTTTGCATTATTCAATTA+TGG | + | chr4_4:30042806-30042825 | Msa0677240:intron | 15.0% |
| !! | ATAATACTATGTTTATAACA+TGG | + | chr4_4:30043506-30043525 | Msa0677240:intron | 15.0% |
| !!! | TTTCTTTTCAATATTGAAAA+AGG | + | chr4_4:30043640-30043659 | Msa0677240:intron | 15.0% |
| !!! | TTCTTTTCAATATTGAAAAA+GGG | + | chr4_4:30043641-30043660 | Msa0677240:intron | 15.0% |
| !! | TAATATAAACTTCATATTCT+AGG | - | chr4_4:30043908-30043927 | None:intergenic | 15.0% |
| !!! | AGCTTTGATCTTTAAATATA+TGG | + | chr4_4:30041977-30041996 | Msa0677240:CDS | 20.0% |
| !!! | TGAATATTTCTTATTGATTG+TGG | + | chr4_4:30042862-30042881 | Msa0677240:intron | 20.0% |
| !! | GTGAAATGATATACATAATA+AGG | - | chr4_4:30043328-30043347 | None:intergenic | 20.0% |
| !! | TTGAAAAGAAAATTGTAAGA+AGG | - | chr4_4:30043631-30043650 | None:intergenic | 20.0% |
| !!! | ATGTCTTCTAATTTTACTTT+CGG | + | chr4_4:30044054-30044073 | Msa0677240:intron | 20.0% |
| !!! | TTCTTTAATTTCCAACAAAA+GGG | + | chr4_4:30044093-30044112 | Msa0677240:intron | 20.0% |
| !! | GAAACTAAATGAAAAAACAA+AGG | - | chr4_4:30044426-30044445 | None:intergenic | 20.0% |
| !! | TTTCCTTTCAATCAATTTAA+TGG | + | chr4_4:30044442-30044461 | Msa0677240:intron | 20.0% |
| !! | TTCCTTTCAATCAATTTAAT+GGG | + | chr4_4:30044443-30044462 | Msa0677240:intron | 20.0% |
| !! | ACTAGATAAAAATGAATGTT+GGG | - | chr4_4:30044890-30044909 | None:intergenic | 20.0% |
| !!! | TCATTTTTATCTAGTGAATA+TGG | + | chr4_4:30044895-30044914 | Msa0677240:CDS | 20.0% |
| ! | TAGATAGATAGATACATAGA+TGG | - | chr4_4:30041589-30041608 | None:intergenic | 25.0% |
| ! | ATCTATGTATCTATCTATCT+AGG | + | chr4_4:30041588-30041607 | Msa0677240:five_prime_UTR | 25.0% |
| ! | TCTATGTATCTATCTATCTA+GGG | + | chr4_4:30041589-30041608 | Msa0677240:five_prime_UTR | 25.0% |
| ! | ATCTTTAAATATATGGTTGC+TGG | + | chr4_4:30041984-30042003 | Msa0677240:CDS | 25.0% |
| ! | TTAGTTAGTTAGTTACTTAC+AGG | - | chr4_4:30042099-30042118 | None:intergenic | 25.0% |
| !! | AAAGTTAGTTAGTTGATTCT+TGG | + | chr4_4:30042430-30042449 | Msa0677240:intron | 25.0% |
| ! | TTGAATGTAACTACATGTAT+TGG | + | chr4_4:30042592-30042611 | Msa0677240:intron | 25.0% |
| ! | AATGGTATCAAGATGATAAT+CGG | - | chr4_4:30043266-30043285 | None:intergenic | 25.0% |
| !! | ACTTGTTGATTGCTTTAAAT+TGG | + | chr4_4:30043348-30043367 | Msa0677240:intron | 25.0% |
| !!! | ATTTTTTGTTCCATTCTCTT+CGG | - | chr4_4:30043387-30043406 | None:intergenic | 25.0% |
| !! | AGTTATTGGTTACTTTCTTT+GGG | + | chr4_4:30043602-30043621 | Msa0677240:intron | 25.0% |
| ! | TTGTTCTCTATATTTGTGTT+GGG | + | chr4_4:30043724-30043743 | Msa0677240:intron | 25.0% |
| ! | TCAAAATGTCATTCAAAAAG+TGG | - | chr4_4:30043816-30043835 | None:intergenic | 25.0% |
| ! | TCTAGGAATAAATAAATGCA+TGG | - | chr4_4:30043891-30043910 | None:intergenic | 25.0% |
| !!! | CATTTTAGCATGTTAATATG+TGG | + | chr4_4:30043966-30043985 | Msa0677240:intron | 25.0% |
| !! | CTTTTGTTGGAAATTAAAGA+AGG | - | chr4_4:30044094-30044113 | None:intergenic | 25.0% |
| !! | CTTCTTTAATTTCCAACAAA+AGG | + | chr4_4:30044092-30044111 | Msa0677240:intron | 25.0% |
| !! | TGCAAATTTTATTCTTTTCG+TGG | + | chr4_4:30044154-30044173 | Msa0677240:intron | 25.0% |
| ! | CTTGTATGATTAAATATGAC+TGG | + | chr4_4:30044590-30044609 | Msa0677240:intron | 25.0% |
| ! | AAGATACCTGTTCAATTAAA+CGG | - | chr4_4:30044686-30044705 | None:intergenic | 25.0% |
| ! | CTAGATAAAAATGAATGTTG+GGG | - | chr4_4:30044889-30044908 | None:intergenic | 25.0% |
| ! | CACTAGATAAAAATGAATGT+TGG | - | chr4_4:30044891-30044910 | None:intergenic | 25.0% |
| CTATGTATCTATCTATCTAG+GGG | + | chr4_4:30041590-30041609 | Msa0677240:five_prime_UTR | 30.0% | |
| TATGTATCTATCTATCTAGG+GGG | + | chr4_4:30041591-30041610 | Msa0677240:five_prime_UTR | 30.0% | |
| ! | AGAAAAAGTATGAATAGCTC+TGG | + | chr4_4:30041858-30041877 | Msa0677240:exon | 30.0% |
| TTAGTTAGTTACTTACAGGT+AGG | - | chr4_4:30042095-30042114 | None:intergenic | 30.0% | |
| CATCAAATATGCAGCTATTA+GGG | - | chr4_4:30042217-30042236 | None:intergenic | 30.0% | |
| TCATCAAATATGCAGCTATT+AGG | - | chr4_4:30042218-30042237 | None:intergenic | 30.0% | |
| ACTTTGGATTAAAGACATGT+CGG | - | chr4_4:30042633-30042652 | None:intergenic | 30.0% | |
| ATGTCTTTAATCCAAAGTGT+CGG | + | chr4_4:30042635-30042654 | Msa0677240:intron | 30.0% | |
| AATCCAAATTGACAGATAGT+GGG | - | chr4_4:30042702-30042721 | None:intergenic | 30.0% | |
| AAATCCAAATTGACAGATAG+TGG | - | chr4_4:30042703-30042722 | None:intergenic | 30.0% | |
| ATCTATGTCTCTCTCAAAAA+TGG | - | chr4_4:30042732-30042751 | None:intergenic | 30.0% | |
| !! | TTTTGAGAGAGACATAGATT+TGG | + | chr4_4:30042733-30042752 | Msa0677240:intron | 30.0% |
| ! | TTTCTTATTGATTGTGGTCT+AGG | + | chr4_4:30042868-30042887 | Msa0677240:intron | 30.0% |
| ! | TTCTTATTGATTGTGGTCTA+GGG | + | chr4_4:30042869-30042888 | Msa0677240:intron | 30.0% |
| GTAAATTTACAAGCACAGTT+AGG | - | chr4_4:30042932-30042951 | None:intergenic | 30.0% | |
| ! | TGAGTTACTGTTCCTTTTAT+GGG | + | chr4_4:30042954-30042973 | Msa0677240:CDS | 30.0% |
| CAATACCTGTATTCTTTACT+TGG | - | chr4_4:30043301-30043320 | None:intergenic | 30.0% | |
| ! | ATACTTTTAACCGAAGAGAA+TGG | + | chr4_4:30043374-30043393 | Msa0677240:intron | 30.0% |
| AAACTCAACTGCACAATAAT+GGG | - | chr4_4:30043475-30043494 | None:intergenic | 30.0% | |
| CAACAATTTACACAAAGATG+TGG | - | chr4_4:30043569-30043588 | None:intergenic | 30.0% | |
| GAAAGAATGACAAGAGTTAT+TGG | + | chr4_4:30043588-30043607 | Msa0677240:intron | 30.0% | |
| ! | GAGTTATTGGTTACTTTCTT+TGG | + | chr4_4:30043601-30043620 | Msa0677240:intron | 30.0% |
| CATAGACAAAATAACAGTTG+AGG | - | chr4_4:30043689-30043708 | None:intergenic | 30.0% | |
| CTTGTTCTCTATATTTGTGT+TGG | + | chr4_4:30043723-30043742 | Msa0677240:intron | 30.0% | |
| TGTCATTCAAAAAGTGGTTT+GGG | - | chr4_4:30043810-30043829 | None:intergenic | 30.0% | |
| ATGTCATTCAAAAAGTGGTT+TGG | - | chr4_4:30043811-30043830 | None:intergenic | 30.0% | |
| !! | ACATTTTGACAAAATTGCGA+GGG | + | chr4_4:30043827-30043846 | Msa0677240:intron | 30.0% |
| AAATTTGCAGCTAGATTTGA+AGG | - | chr4_4:30044143-30044162 | None:intergenic | 30.0% | |
| TGACGTCAGACAAATTTATT+TGG | + | chr4_4:30044319-30044338 | Msa0677240:intron | 30.0% | |
| GACGTCAGACAAATTTATTT+GGG | + | chr4_4:30044320-30044339 | Msa0677240:intron | 30.0% | |
| GTCCCATTAAATTGATTGAA+AGG | - | chr4_4:30044448-30044467 | None:intergenic | 30.0% | |
| AATTTAATGGGACCTTGATT+CGG | + | chr4_4:30044455-30044474 | Msa0677240:intron | 30.0% | |
| CAAACGAAAAATCATGAAGA+TGG | - | chr4_4:30044525-30044544 | None:intergenic | 30.0% | |
| ! | TTCGTTTGTAGTATTGAACA+TGG | + | chr4_4:30044537-30044556 | Msa0677240:intron | 30.0% |
| GCAACAAATTATAAGCGAAA+AGG | + | chr4_4:30044615-30044634 | Msa0677240:intron | 30.0% | |
| !!! | TCTTTTTTTACTACATGACG+TGG | + | chr4_4:30044640-30044659 | Msa0677240:intron | 30.0% |
| AGATACCTGTTCAATTAAAC+GGG | - | chr4_4:30044685-30044704 | None:intergenic | 30.0% | |
| TAATTGAACAGGTATCTTCA+AGG | + | chr4_4:30044688-30044707 | Msa0677240:intron | 30.0% | |
| !! | TGATTTTGATGCAGAAAAAG+AGG | - | chr4_4:30044833-30044852 | None:intergenic | 30.0% |
| TTATCTAGTGAATATGGATC+TGG | + | chr4_4:30044901-30044920 | Msa0677240:CDS | 30.0% | |
| GGTAGTACAAGTATTTGACT+TGG | + | chr4_4:30041622-30041641 | Msa0677240:five_prime_UTR | 35.0% | |
| ATACTAACATAGCATCCATC+CGG | + | chr4_4:30041655-30041674 | Msa0677240:five_prime_UTR | 35.0% | |
| !!! | TGGTTTGGTTTGTTTTGGTT+CGG | - | chr4_4:30041698-30041717 | None:intergenic | 35.0% |
| !!! | CCATTTGGTTTGGTTTGTTT+TGG | - | chr4_4:30041703-30041722 | None:intergenic | 35.0% |
| CCAAAACAAACCAAACCAAA+TGG | + | chr4_4:30041700-30041719 | Msa0677240:five_prime_UTR | 35.0% | |
| !! | AAAAGTATGAATAGCTCTGG+TGG | + | chr4_4:30041861-30041880 | Msa0677240:exon | 35.0% |
| GAAAACTGGAATGAATAGGA+AGG | - | chr4_4:30042034-30042053 | None:intergenic | 35.0% | |
| GAGTGAAAACTGGAATGAAT+AGG | - | chr4_4:30042038-30042057 | None:intergenic | 35.0% | |
| GTTACTTACAGGTAGGAATA+GGG | - | chr4_4:30042088-30042107 | None:intergenic | 35.0% | |
| AGTTACTTACAGGTAGGAAT+AGG | - | chr4_4:30042089-30042108 | None:intergenic | 35.0% | |
| ATAACTTCATTGGATCTCTC+AGG | - | chr4_4:30042260-30042279 | None:intergenic | 35.0% | |
| !! | TCTTGGCTTGTTACTTTAGA+AGG | + | chr4_4:30042447-30042466 | Msa0677240:intron | 35.0% |
| !! | CTTGGCTTGTTACTTTAGAA+GGG | + | chr4_4:30042448-30042467 | Msa0677240:intron | 35.0% |
| ATGTGTGTGCAAACAATAGA+GGG | - | chr4_4:30042513-30042532 | None:intergenic | 35.0% | |
| !! | TACATGTATTGGTGTTGTGT+CGG | + | chr4_4:30042603-30042622 | Msa0677240:intron | 35.0% |
| TTTCCCACTATCTGTCAATT+TGG | + | chr4_4:30042696-30042715 | Msa0677240:intron | 35.0% | |
| ! | GTGAGTTACTGTTCCTTTTA+TGG | + | chr4_4:30042953-30042972 | Msa0677240:intron | 35.0% |
| ATTCCCACAACAAATGCATT+TGG | + | chr4_4:30043202-30043221 | Msa0677240:CDS | 35.0% | |
| !! | CTACCAAATGCATTTGTTGT+GGG | - | chr4_4:30043208-30043227 | None:intergenic | 35.0% |
| ! | ACTACCAAATGCATTTGTTG+TGG | - | chr4_4:30043209-30043228 | None:intergenic | 35.0% |
| GGTAGTGTTCAAAATACTAC+AGG | + | chr4_4:30043223-30043242 | Msa0677240:CDS | 35.0% | |
| GTTCAAAATACTACAGGTTC+TGG | + | chr4_4:30043229-30043248 | Msa0677240:CDS | 35.0% | |
| TATCAAGATGATAATCGGCA+CGG | - | chr4_4:30043261-30043280 | None:intergenic | 35.0% | |
| ATCTTGATACCATTCCCTAT+GGG | + | chr4_4:30043272-30043291 | Msa0677240:CDS | 35.0% | |
| TCTTTACTTGGAATCCCATA+GGG | - | chr4_4:30043289-30043308 | None:intergenic | 35.0% | |
| TTCTTTACTTGGAATCCCAT+AGG | - | chr4_4:30043290-30043309 | None:intergenic | 35.0% | |
| GGATTCCAAGTAAAGAATAC+AGG | + | chr4_4:30043293-30043312 | Msa0677240:CDS | 35.0% | |
| GAAACTCAACTGCACAATAA+TGG | - | chr4_4:30043476-30043495 | None:intergenic | 35.0% | |
| !! | GACATTTTGACAAAATTGCG+AGG | + | chr4_4:30043826-30043845 | Msa0677240:intron | 35.0% |
| TCAAAGAGAGCAACATGATA+TGG | - | chr4_4:30044183-30044202 | None:intergenic | 35.0% | |
| TTCAAAGCTTGAACTTCTGA+TGG | + | chr4_4:30044391-30044410 | Msa0677240:intron | 35.0% | |
| ATGATGAACTTACCGAATCA+AGG | - | chr4_4:30044470-30044489 | None:intergenic | 35.0% | |
| ! | GATTCGGTAAGTTCATCATA+TGG | + | chr4_4:30044471-30044490 | Msa0677240:intron | 35.0% |
| TCTTCAAGGTCTTAAATCTG+AGG | + | chr4_4:30044702-30044721 | Msa0677240:CDS | 35.0% | |
| CTTCAAGGTCTTAAATCTGA+GGG | + | chr4_4:30044703-30044722 | Msa0677240:CDS | 35.0% | |
| ! | GGATATTGAAAGTTGAGTTG+TGG | - | chr4_4:30045040-30045059 | None:intergenic | 35.0% |
| ! | CGGTGAGATATATTCAAGTT+CGG | + | chr4_4:30045110-30045129 | Msa0677240:CDS | 35.0% |
| ATCTGCAACGGTATAATTAC+AGG | - | chr4_4:30045178-30045197 | None:intergenic | 35.0% | |
| TTGATTGTGTTATGTCCGGA+TGG | - | chr4_4:30041673-30041692 | None:intergenic | 40.0% | |
| !! | GGTGTTGATTGTGTTATGTC+CGG | - | chr4_4:30041677-30041696 | None:intergenic | 40.0% |
| TGAATAGGAAGGACAAGATC+AGG | - | chr4_4:30042023-30042042 | None:intergenic | 40.0% | |
| GGAAGAAAGAGAGTGAAAAC+TGG | - | chr4_4:30042048-30042067 | None:intergenic | 40.0% | |
| AGGGTGGTGAAAGAAGTTAT+TGG | - | chr4_4:30042069-30042088 | None:intergenic | 40.0% | |
| TTGGATCTCTCAGGAACAAA+GGG | - | chr4_4:30042251-30042270 | None:intergenic | 40.0% | |
| ATTGGATCTCTCAGGAACAA+AGG | - | chr4_4:30042252-30042271 | None:intergenic | 40.0% | |
| !! | GATTCTCTCTGGAGTCAATT+TGG | - | chr4_4:30042316-30042335 | None:intergenic | 40.0% |
| CATGTGTGTGCAAACAATAG+AGG | - | chr4_4:30042514-30042533 | None:intergenic | 40.0% | |
| !! | AATGTTTTGCACCGACACTT+TGG | - | chr4_4:30042649-30042668 | None:intergenic | 40.0% |
| ! | CTGTTCCTTTTATGGGAAGA+AGG | + | chr4_4:30042961-30042980 | Msa0677240:CDS | 40.0% |
| ! | TTCCTTTTATGGGAAGAAGG+TGG | + | chr4_4:30042964-30042983 | Msa0677240:CDS | 40.0% |
| !! | AAAAAAGTGGAGGTGCTCTA+AGG | + | chr4_4:30043021-30043040 | Msa0677240:CDS | 40.0% |
| ATTCCACAGGCTTTCTTGAA+CGG | - | chr4_4:30043099-30043118 | None:intergenic | 40.0% | |
| !! | CATTTGTTGTGGGAATGTTC+TGG | - | chr4_4:30043198-30043217 | None:intergenic | 40.0% |
| CATCTTGATACCATTCCCTA+TGG | + | chr4_4:30043271-30043290 | Msa0677240:CDS | 40.0% | |
| CTAATGCTTGTGAATCTCTG+TGG | - | chr4_4:30043544-30043563 | None:intergenic | 40.0% | |
| !! | TCATGGAGATCTACTGATTC+CGG | - | chr4_4:30043783-30043802 | None:intergenic | 40.0% |
| ! | AAAGTGGTTTGGGTGATTCA+TGG | - | chr4_4:30043800-30043819 | None:intergenic | 40.0% |
| AAAATTGCGAGGGAGAAAGA+CGG | + | chr4_4:30043837-30043856 | Msa0677240:intron | 40.0% | |
| ! | AGCATCAAACACCCTTTTGT+TGG | - | chr4_4:30044107-30044126 | None:intergenic | 40.0% |
| GCAACTCTAGTTGACATCAA+AGG | - | chr4_4:30044811-30044830 | None:intergenic | 40.0% | |
| GGGATAATCACTTTGCAACA+TGG | - | chr4_4:30044869-30044888 | None:intergenic | 40.0% | |
| TTAGGCCATTCGCTGAAAAA+GGG | - | chr4_4:30044961-30044980 | None:intergenic | 40.0% | |
| CTTGAATATATCTCACCGTG+TGG | - | chr4_4:30045108-30045127 | None:intergenic | 40.0% | |
| TCTATCTAGGGGGAGTTGAA+TGG | + | chr4_4:30041601-30041620 | Msa0677240:five_prime_UTR | 45.0% | |
| TCGGAAGGAACCATTTGGTT+TGG | - | chr4_4:30041713-30041732 | None:intergenic | 45.0% | |
| CTTTGTCGGAAGGAACCATT+TGG | - | chr4_4:30041718-30041737 | None:intergenic | 45.0% | |
| ! | AGACTCAGATCGAGCTTTGT+CGG | - | chr4_4:30041732-30041751 | None:intergenic | 45.0% |
| !! | AGTATGAATAGCTCTGGTGG+TGG | + | chr4_4:30041864-30041883 | Msa0677240:exon | 45.0% |
| ! | AGTAGTAACAACGGAGGTGT+AGG | + | chr4_4:30041888-30041907 | Msa0677240:CDS | 45.0% |
| ! | GTAGTAACAACGGAGGTGTA+GGG | + | chr4_4:30041889-30041908 | Msa0677240:CDS | 45.0% |
| ATAGGAAGGACAAGATCAGG+TGG | - | chr4_4:30042020-30042039 | None:intergenic | 45.0% | |
| ACTTACAGGTAGGAATAGGG+TGG | - | chr4_4:30042085-30042104 | None:intergenic | 45.0% | |
| TGGATCTCTCAGGAACAAAG+GGG | - | chr4_4:30042250-30042269 | None:intergenic | 45.0% | |
| CATTCGATCGTAACCCACTT+GGG | - | chr4_4:30042399-30042418 | None:intergenic | 45.0% | |
| TCATTCGATCGTAACCCACT+TGG | - | chr4_4:30042400-30042419 | None:intergenic | 45.0% | |
| ! | CTAGGGTGTGTCTGAAATGT+TGG | + | chr4_4:30042886-30042905 | Msa0677240:intron | 45.0% |
| GTCCACCTTCTTCCCATAAA+AGG | - | chr4_4:30042969-30042988 | None:intergenic | 45.0% | |
| GGAGGACTGATGGAAAAAAG+TGG | + | chr4_4:30043008-30043027 | Msa0677240:CDS | 45.0% | |
| GGACTGATGGAAAAAAGTGG+AGG | + | chr4_4:30043011-30043030 | Msa0677240:CDS | 45.0% | |
| GCCTGTGGAATCACAAACTA+TGG | + | chr4_4:30043108-30043127 | Msa0677240:CDS | 45.0% | |
| ! | GCCATAGTTTGTGATTCCAC+AGG | - | chr4_4:30043112-30043131 | None:intergenic | 45.0% |
| ACTTGGAATCCCATAGGGAA+TGG | - | chr4_4:30043284-30043303 | None:intergenic | 45.0% | |
| GAGGGCTAGGTATTAGATAC+CGG | + | chr4_4:30043761-30043780 | Msa0677240:intron | 45.0% | |
| TTATCCCCATGTGACAGCTA+TGG | - | chr4_4:30044008-30044027 | None:intergenic | 45.0% | |
| TCACATGGGGATAATGAGCA+AGG | + | chr4_4:30044014-30044033 | Msa0677240:intron | 45.0% | |
| ATGGGGATAATGAGCAAGGT+AGG | + | chr4_4:30044018-30044037 | Msa0677240:intron | 45.0% | |
| CAAGGTCTTAAATCTGAGGG+TGG | + | chr4_4:30044706-30044725 | Msa0677240:CDS | 45.0% | |
| AGCTTCTTTGCAGAAGCTTC+AGG | + | chr4_4:30044736-30044755 | Msa0677240:CDS | 45.0% | |
| TTCTTTGCAGAAGCTTCAGG+AGG | + | chr4_4:30044739-30044758 | Msa0677240:CDS | 45.0% | |
| AGACAACAAGGGTCTCCAAA+TGG | + | chr4_4:30044762-30044781 | Msa0677240:CDS | 45.0% | |
| TTTCCAGCTGTGACTCCATT+TGG | - | chr4_4:30044780-30044799 | None:intergenic | 45.0% | |
| AGTCACAGCTGGAAAACACA+TGG | + | chr4_4:30044785-30044804 | Msa0677240:CDS | 45.0% | |
| !!! | TTCGACCCTTTTTCAGCGAA+TGG | + | chr4_4:30044953-30044972 | Msa0677240:CDS | 45.0% |
| CTTAGGCCATTCGCTGAAAA+AGG | - | chr4_4:30044962-30044981 | None:intergenic | 45.0% | |
| ! | TGTGGAGAATGCTGTTTGGT+TGG | - | chr4_4:30045022-30045041 | None:intergenic | 45.0% |
| GAGTTGTGGAGAATGCTGTT+TGG | - | chr4_4:30045026-30045045 | None:intergenic | 45.0% | |
| GTCAGACGATGACATAGGAA+TGG | - | chr4_4:30045061-30045080 | None:intergenic | 45.0% | |
| GAGAAGTCAGACGATGACAT+AGG | - | chr4_4:30045066-30045085 | None:intergenic | 45.0% | |
| ! | TCAGATCGAGCTTTGTCGGA+AGG | - | chr4_4:30041728-30041747 | None:intergenic | 50.0% |
| GACAAAGCTCGATCTGAGTC+TGG | + | chr4_4:30041731-30041750 | Msa0677240:five_prime_UTR | 50.0% | |
| ! | GGTGGTGGCAGTAGTAACAA+CGG | + | chr4_4:30041879-30041898 | Msa0677240:CDS | 50.0% |
| ! | GGAGGTGTAGGGATGATGAT+GGG | + | chr4_4:30041900-30041919 | Msa0677240:CDS | 50.0% |
| TGCCACTGAGACACTGTGAA+GGG | - | chr4_4:30041942-30041961 | None:intergenic | 50.0% | |
| AGGACAAGATCAGGTGGAAC+AGG | - | chr4_4:30042014-30042033 | None:intergenic | 50.0% | |
| GTCTCAGGTTCGATTCTCTC+TGG | - | chr4_4:30042327-30042346 | None:intergenic | 50.0% | |
| GAATCGAACCTGAGACCTTG+AGG | + | chr4_4:30042331-30042350 | Msa0677240:intron | 50.0% | |
| ATACTCCTCCTCAAGGTCTC+AGG | - | chr4_4:30042342-30042361 | None:intergenic | 50.0% | |
| ! | TGGGAGTATACTCCTCCTCA+AGG | - | chr4_4:30042349-30042368 | None:intergenic | 50.0% |
| ! | TTGAGGAGGAGTATACTCCC+AGG | + | chr4_4:30042348-30042367 | Msa0677240:intron | 50.0% |
| !! | GTGGTATTGGCTTGAGACCT+GGG | - | chr4_4:30042368-30042387 | None:intergenic | 50.0% |
| !! | AGTGGTATTGGCTTGAGACC+TGG | - | chr4_4:30042369-30042388 | None:intergenic | 50.0% |
| !! | TTGGGTTGGCTCAGTGGTAT+TGG | - | chr4_4:30042381-30042400 | None:intergenic | 50.0% |
| TTATGGGAAGAAGGTGGACC+CGG | + | chr4_4:30042970-30042989 | Msa0677240:CDS | 50.0% | |
| TCAGTCCTCCTACATCTTCC+TGG | - | chr4_4:30042998-30043017 | None:intergenic | 50.0% | |
| GGAAGATGTAGGAGGACTGA+TGG | + | chr4_4:30042998-30043017 | Msa0677240:CDS | 50.0% | |
| GCTCACAGTACTTGGAGTCT+GGG | - | chr4_4:30043054-30043073 | None:intergenic | 50.0% | |
| CAGGCTTTCTTGAACGGTTG+CGG | - | chr4_4:30043093-30043112 | None:intergenic | 50.0% | |
| CAACCGTTCAAGAAAGCCTG+TGG | + | chr4_4:30043093-30043112 | Msa0677240:CDS | 50.0% | |
| GACAGTTAGCGATGTCACAG+TGG | - | chr4_4:30043146-30043165 | None:intergenic | 50.0% | |
| TTGGGTGATACTCTGACACG+AGG | + | chr4_4:30043742-30043761 | Msa0677240:intron | 50.0% | |
| TGGGTGATACTCTGACACGA+GGG | + | chr4_4:30043743-30043762 | Msa0677240:intron | 50.0% | |
| CGTCGCCCGTTTAATTGAAC+AGG | + | chr4_4:30044677-30044696 | Msa0677240:intron | 50.0% | |
| AGCTTCAGGAGGAGACAACA+AGG | + | chr4_4:30044750-30044769 | Msa0677240:CDS | 50.0% | |
| GCTTCAGGAGGAGACAACAA+GGG | + | chr4_4:30044751-30044770 | Msa0677240:CDS | 50.0% | |
| TCTCCAAATGGAGTCACAGC+TGG | + | chr4_4:30044774-30044793 | Msa0677240:CDS | 50.0% | |
| TGGATCTGGAGAAGCTGTGA+AGG | + | chr4_4:30044915-30044934 | Msa0677240:CDS | 50.0% | |
| TGGAGAAGCTGTGAAGGAAG+AGG | + | chr4_4:30044921-30044940 | Msa0677240:CDS | 50.0% | |
| GGAGAAGCTGTGAAGGAAGA+GGG | + | chr4_4:30044922-30044941 | Msa0677240:CDS | 50.0% | |
| TGAAAAAGGGTCGAAGAGGC+TGG | - | chr4_4:30044948-30044967 | None:intergenic | 50.0% | |
| TCGCTGAAAAAGGGTCGAAG+AGG | - | chr4_4:30044952-30044971 | None:intergenic | 50.0% | |
| GACCATGACTCTCTGCTCTT+AGG | - | chr4_4:30044979-30044998 | None:intergenic | 50.0% | |
| AAGAGCAGAGAGTCATGGTC+TGG | + | chr4_4:30044979-30044998 | Msa0677240:CDS | 50.0% | |
| CAGAGAGTCATGGTCTGGTT+TGG | + | chr4_4:30044984-30045003 | Msa0677240:CDS | 50.0% | |
| GGTGGCAGTAGTAACAACGG+AGG | + | chr4_4:30041882-30041901 | Msa0677240:CDS | 55.0% | |
| ! | CGGAGGTGTAGGGATGATGA+TGG | + | chr4_4:30041899-30041918 | Msa0677240:CDS | 55.0% |
| CACCCTTCACAGTGTCTCAG+TGG | + | chr4_4:30041937-30041956 | Msa0677240:CDS | 55.0% | |
| CTGCCACTGAGACACTGTGA+AGG | - | chr4_4:30041943-30041962 | None:intergenic | 55.0% | |
| CTTCACAGTGTCTCAGTGGC+AGG | + | chr4_4:30041941-30041960 | Msa0677240:CDS | 55.0% | |
| TCGAACCTGAGACCTTGAGG+AGG | + | chr4_4:30042334-30042353 | Msa0677240:intron | 55.0% | |
| TACCACTGAGCCAACCCAAG+TGG | + | chr4_4:30042382-30042401 | Msa0677240:intron | 55.0% | |
| ACCACTGAGCCAACCCAAGT+GGG | + | chr4_4:30042383-30042402 | Msa0677240:intron | 55.0% | |
| CGATCGTAACCCACTTGGGT+TGG | - | chr4_4:30042395-30042414 | None:intergenic | 55.0% | |
| TCCTACATCTTCCTGGCTCC+GGG | - | chr4_4:30042991-30043010 | None:intergenic | 55.0% | |
| CTCCTACATCTTCCTGGCTC+CGG | - | chr4_4:30042992-30043011 | None:intergenic | 55.0% | |
| CGCTCACAGTACTTGGAGTC+TGG | - | chr4_4:30043055-30043074 | None:intergenic | 55.0% | |
| CATGTGGCGCTCACAGTACT+TGG | - | chr4_4:30043062-30043081 | None:intergenic | 55.0% | |
| GTGACATCGCTAACTGTCGC+TGG | + | chr4_4:30043148-30043167 | Msa0677240:CDS | 55.0% | |
| ACATCGCTAACTGTCGCTGG+TGG | + | chr4_4:30043151-30043170 | Msa0677240:CDS | 55.0% | |
| GATACTCTGACACGAGGGCT+AGG | + | chr4_4:30043748-30043767 | Msa0677240:intron | 55.0% | |
| AGCTATGGCAGGCTGACAGA+AGG | - | chr4_4:30043993-30044012 | None:intergenic | 55.0% | |
| AGCCTGCCATAGCTGTCACA+TGG | + | chr4_4:30043999-30044018 | Msa0677240:intron | 55.0% | |
| GCCTGCCATAGCTGTCACAT+GGG | + | chr4_4:30044000-30044019 | Msa0677240:intron | 55.0% | |
| CCTGCCATAGCTGTCACATG+GGG | + | chr4_4:30044001-30044020 | Msa0677240:intron | 55.0% | |
| CGGGCGACGAATAACGATGT+TGG | - | chr4_4:30044666-30044685 | None:intergenic | 55.0% | |
| GGCCTAAGAGCAGAGAGTCA+TGG | + | chr4_4:30044974-30044993 | Msa0677240:CDS | 55.0% | |
| ACAAGCTCTCAGTCGCCACA+CGG | + | chr4_4:30045090-30045109 | Msa0677240:CDS | 55.0% | |
| !! | ACCCACTTGGGTTGGCTCAG+TGG | - | chr4_4:30042387-30042406 | None:intergenic | 60.0% |
| ACCCGGAGCCAGGAAGATGT+AGG | + | chr4_4:30042987-30043006 | Msa0677240:CDS | 60.0% | |
| CGGAGCCAGGAAGATGTAGG+AGG | + | chr4_4:30042990-30043009 | Msa0677240:CDS | 60.0% | |
| TGTGAGCGCCACATGCATCG+TGG | + | chr4_4:30043067-30043086 | Msa0677240:CDS | 60.0% | |
| CCCCATGTGACAGCTATGGC+AGG | - | chr4_4:30044004-30044023 | None:intergenic | 60.0% | |
| AAGAAGGTGGACCCGGAGCC+AGG | + | chr4_4:30042977-30042996 | Msa0677240:CDS | 65.0% | |
| GGTTGCGGCCACGATGCATG+TGG | - | chr4_4:30043078-30043097 | None:intergenic | 65.0% | |
| GCTGGTGGCAGCAGCAGAGC+TGG | + | chr4_4:30043166-30043185 | Msa0677240:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 30041559 | 30045203 | 30041559 | ID=Msa0677240;Name=Msa0677240 |
| chr4_4 | mRNA | 30041559 | 30045203 | 30041559 | ID=Msa0677240-mRNA-1;Parent=Msa0677240;Name=Msa0677240-mRNA-1;_AED=0.23;_eAED=0.24;_QI=308|1|0.66|1|1|1|3|0|365 |
| chr4_4 | exon | 30041559 | 30042098 | 30041559 | ID=Msa0677240-mRNA-1:exon:7637;Parent=Msa0677240-mRNA-1 |
| chr4_4 | exon | 30042954 | 30043314 | 30042954 | ID=Msa0677240-mRNA-1:exon:7638;Parent=Msa0677240-mRNA-1 |
| chr4_4 | exon | 30044699 | 30045203 | 30044699 | ID=Msa0677240-mRNA-1:exon:7639;Parent=Msa0677240-mRNA-1 |
| chr4_4 | five_prime_UTR | 30041559 | 30041866 | 30041559 | ID=Msa0677240-mRNA-1:five_prime_utr;Parent=Msa0677240-mRNA-1 |
| chr4_4 | CDS | 30041867 | 30042098 | 30041867 | ID=Msa0677240-mRNA-1:cds;Parent=Msa0677240-mRNA-1 |
| chr4_4 | CDS | 30042954 | 30043314 | 30042954 | ID=Msa0677240-mRNA-1:cds;Parent=Msa0677240-mRNA-1 |
| chr4_4 | CDS | 30044699 | 30045203 | 30044699 | ID=Msa0677240-mRNA-1:cds;Parent=Msa0677240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
