Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0679980 | XP_024636833.1 | 76.025 | 317 | 12 | 3 | 1 | 253 | 1 | 317 | 6.21e-159 | 454 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0679980 | A0A396I6X6 | 76.025 | 317 | 12 | 3 | 1 | 253 | 1 | 317 | 2.97e-159 | 454 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0641440 | Msa0679980 | 0.828530 | 8.540087e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0679980 | MtrunA17_Chr4g0026091 | 76.025 | 317 | 12 | 3 | 1 | 253 | 1 | 317 | 5.71e-163 | 454 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0679980 | AT5G22340.1 | 46.975 | 281 | 78 | 6 | 40 | 253 | 47 | 323 | 5.08e-71 | 221 |
| Msa0679980 | AT5G22340.2 | 45.607 | 239 | 73 | 5 | 40 | 225 | 47 | 281 | 2.89e-54 | 178 |
Find 90 sgRNAs with CRISPR-Local
Find 327 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAGTCATCTTCCTGTTTAC+TGG | 0.163264 | 4_4:+38628700 | None:intergenic |
| CGTTGTTGTACACTTATTTA+AGG | 0.190500 | 4_4:-38626534 | Msa0679980:three_prime_UTR |
| GTGATCCCGGCTGCAATTTA+TGG | 0.223863 | 4_4:-38627226 | Msa0679980:CDS |
| CTCAGCCTTCAAAATTCTTC+TGG | 0.224073 | 4_4:+38626710 | None:intergenic |
| CAGCTTGTGCCAGCCATGTT+TGG | 0.234831 | 4_4:-38626803 | Msa0679980:CDS |
| AGTCCAAAGTAAACCGAAAT+TGG | 0.248370 | 4_4:-38631384 | Msa0679980:five_prime_UTR |
| GGCTGCAATTTATGGACTTT+GGG | 0.259928 | 4_4:-38627218 | Msa0679980:CDS |
| CAAGAACTTGTGATTTAATA+TGG | 0.266135 | 4_4:-38629031 | Msa0679980:CDS |
| CGAATGGATTTCAGAAATTC+TGG | 0.279455 | 4_4:-38629008 | Msa0679980:CDS |
| AGGAGAAAATGAAGGGGTTT+TGG | 0.293414 | 4_4:+38631273 | None:intergenic |
| CGGGAACCTCACCCCAATTT+CGG | 0.305544 | 4_4:+38631371 | None:intergenic |
| AGTACCCAAGAGTGGTTATT+AGG | 0.309012 | 4_4:-38628736 | Msa0679980:CDS |
| AGGAACGGTTTCACTGGATA+TGG | 0.321858 | 4_4:+38627474 | None:intergenic |
| CGGCTGCAATTTATGGACTT+TGG | 0.323212 | 4_4:-38627219 | Msa0679980:CDS |
| GTTATAAATTTAGCTTGTAT+TGG | 0.330761 | 4_4:+38626320 | None:intergenic |
| TGCTATAAGTTATGCGATTC+GGG | 0.332209 | 4_4:-38627896 | Msa0679980:CDS |
| TCAGGGGCGGATGCTTTCAT+AGG | 0.358201 | 4_4:+38626417 | None:intergenic |
| AGCTTGTGCCAGCCATGTTT+GGG | 0.359430 | 4_4:-38626802 | Msa0679980:CDS |
| AGGTAACTGAATATAAAATA+TGG | 0.363552 | 4_4:-38626450 | Msa0679980:three_prime_UTR |
| TTATAAATTTAGCTTGTATT+GGG | 0.364168 | 4_4:+38626321 | None:intergenic |
| TATTGTTATCTAGTGTTTGT+TGG | 0.365243 | 4_4:+38626355 | None:intergenic |
| CATCCAATGTATATTATTAG+AGG | 0.371654 | 4_4:-38626470 | Msa0679980:three_prime_UTR |
| ATCTCCAAGGCTTGTGATCC+CGG | 0.387857 | 4_4:-38627239 | Msa0679980:CDS |
| CTGCTATAAGTTATGCGATT+CGG | 0.395971 | 4_4:-38627897 | Msa0679980:CDS |
| GTCCAAAGTAAACCGAAATT+GGG | 0.399362 | 4_4:-38631383 | Msa0679980:five_prime_UTR |
| GGCGGATGCTTTCATAGGGG+AGG | 0.405475 | 4_4:+38626422 | None:intergenic |
| TGTCGCCTAATAACCACTCT+TGG | 0.416392 | 4_4:+38628731 | None:intergenic |
| ACAATTCTGCACCAGTAAAC+AGG | 0.428920 | 4_4:-38628711 | Msa0679980:CDS |
| GAATTGAAAGGTGTAAGAAT+TGG | 0.434883 | 4_4:+38631297 | None:intergenic |
| ACCCCAATTTCGGTTTACTT+TGG | 0.439222 | 4_4:+38631381 | None:intergenic |
| ATTCTTTCGAGAAAACAATC+AGG | 0.440956 | 4_4:-38627282 | Msa0679980:CDS |
| TATTTGAGGAACGGTTTCAC+TGG | 0.443640 | 4_4:+38627468 | None:intergenic |
| TATAGAGACAATAAAGACTT+AGG | 0.447368 | 4_4:-38626743 | Msa0679980:CDS |
| ATGCAATAACAAACCTGAAA+AGG | 0.451361 | 4_4:+38627872 | None:intergenic |
| ATGTAAGTAGTGCTTAGTTC+CGG | 0.451394 | 4_4:+38626602 | None:intergenic |
| TTCCAACATTTGAGGATGTA+GGG | 0.453530 | 4_4:+38626639 | None:intergenic |
| TCAAGATCGAGGTTCTAGTC+AGG | 0.465199 | 4_4:+38626399 | None:intergenic |
| TTCCCTACATCCTCAAATGT+TGG | 0.469783 | 4_4:-38626641 | Msa0679980:three_prime_UTR |
| CTATCAATGCTGTGCTGCCA+TGG | 0.470254 | 4_4:-38631338 | Msa0679980:exon |
| TTGAAGGATAGAGAATTAAA+CGG | 0.472253 | 4_4:-38629065 | Msa0679980:CDS |
| GGCAGCACAGCATTGATAGA+TGG | 0.481332 | 4_4:+38631342 | None:intergenic |
| TTTCCAACATTTGAGGATGT+AGG | 0.486280 | 4_4:+38626638 | None:intergenic |
| TAAGTTTGTAGATATTCTAC+TGG | 0.492754 | 4_4:-38626558 | Msa0679980:three_prime_UTR |
| TTGTGATTTAATATGGCGAA+TGG | 0.496486 | 4_4:-38629024 | Msa0679980:CDS |
| GCTTCTCGTACTACTACTAC+AGG | 0.501485 | 4_4:-38631202 | Msa0679980:intron |
| CAGGGGCGGATGCTTTCATA+GGG | 0.504586 | 4_4:+38626418 | None:intergenic |
| TGGTGTCTGCATGTTGATAC+AGG | 0.506462 | 4_4:+38627494 | None:intergenic |
| CAAAGTCCATAAATTGCAGC+CGG | 0.510763 | 4_4:+38627220 | None:intergenic |
| CTGGTCATTTCCAACATTTG+AGG | 0.516416 | 4_4:+38626631 | None:intergenic |
| TGGAAATGACCAGCTGCATC+CGG | 0.517662 | 4_4:-38626621 | Msa0679980:three_prime_UTR |
| GTCGCCTAATAACCACTCTT+GGG | 0.520653 | 4_4:+38628732 | None:intergenic |
| CATTGATAGATGGATAGAAC+GGG | 0.522540 | 4_4:+38631352 | None:intergenic |
| CAATGCTCAACAAATAGAAC+AGG | 0.524035 | 4_4:-38628952 | Msa0679980:intron |
| TGCTTAGTTCCGGATGCAGC+TGG | 0.525733 | 4_4:+38626612 | None:intergenic |
| TTTCATGAATATTTGAGGAA+CGG | 0.534985 | 4_4:+38627459 | None:intergenic |
| GACAAATCTAATGCTATCCA+TGG | 0.549721 | 4_4:+38631321 | None:intergenic |
| GCAGCCGGGATCACAAGCCT+TGG | 0.549722 | 4_4:+38627235 | None:intergenic |
| TGAAACAGAAGGGGTGTATG+TGG | 0.556628 | 4_4:+38631234 | None:intergenic |
| ACAAACATCCCAAACATGGC+TGG | 0.556898 | 4_4:+38626794 | None:intergenic |
| GTATAGCACTTTCATCTCCA+AGG | 0.559840 | 4_4:-38627252 | Msa0679980:CDS |
| GCATTGATAGATGGATAGAA+CGG | 0.576115 | 4_4:+38631351 | None:intergenic |
| CTCTTAGTGATGAAACAGAA+GGG | 0.578696 | 4_4:+38631224 | None:intergenic |
| TTCTTTCGAGAAAACAATCA+GGG | 0.581970 | 4_4:-38627281 | Msa0679980:CDS |
| TTAGTTTCTAATCAAGATCG+AGG | 0.582530 | 4_4:+38626388 | None:intergenic |
| GCGGATGCTTTCATAGGGGA+GGG | 0.583144 | 4_4:+38626423 | None:intergenic |
| CGGATGCTTTCATAGGGGAG+GGG | 0.583285 | 4_4:+38626424 | None:intergenic |
| CAAGATCGAGGTTCTAGTCA+GGG | 0.586521 | 4_4:+38626400 | None:intergenic |
| TTACCTCTAATAATATACAT+TGG | 0.588813 | 4_4:+38626467 | None:intergenic |
| CATGTTGATACAGGAGCTGA+AGG | 0.591014 | 4_4:+38627503 | None:intergenic |
| GTTGGGAAAGGAGAAAATGA+AGG | 0.596622 | 4_4:+38631265 | None:intergenic |
| GAGAAAACAATCAGGGGTAG+CGG | 0.601554 | 4_4:-38627274 | Msa0679980:CDS |
| AAAGTCCATAAATTGCAGCC+GGG | 0.610396 | 4_4:+38627221 | None:intergenic |
| AACTTTCAAGTACCCAAGAG+TGG | 0.615621 | 4_4:-38628744 | Msa0679980:CDS |
| GCTCTTAGTGATGAAACAGA+AGG | 0.616956 | 4_4:+38631223 | None:intergenic |
| TTGGGAAAGGAGAAAATGAA+GGG | 0.630954 | 4_4:+38631266 | None:intergenic |
| GTAGACAAACATCCCAAACA+TGG | 0.634660 | 4_4:+38626790 | None:intergenic |
| AGTAAACCGAAATTGGGGTG+AGG | 0.636356 | 4_4:-38631377 | Msa0679980:five_prime_UTR |
| ATCGTAGAGACTAACAGTGA+TGG | 0.640233 | 4_4:-38628778 | Msa0679980:CDS |
| TTTAGTGAGTGATGTAGATG+AGG | 0.640687 | 4_4:-38629105 | Msa0679980:intron |
| AAACAGGAAGATGACTGCAA+AGG | 0.643231 | 4_4:-38628695 | Msa0679980:intron |
| ATCGAGGTTCTAGTCAGGGG+CGG | 0.652386 | 4_4:+38626404 | None:intergenic |
| AAGATCGAGGTTCTAGTCAG+GGG | 0.657360 | 4_4:+38626401 | None:intergenic |
| TCCAAAGTAAACCGAAATTG+GGG | 0.666747 | 4_4:-38631382 | Msa0679980:five_prime_UTR |
| ATAGTGTGATCTGCTGAACA+TGG | 0.672212 | 4_4:+38626666 | None:intergenic |
| TCTTAGTGATGAAACAGAAG+GGG | 0.677276 | 4_4:+38631225 | None:intergenic |
| CTTAAATAAGTGTACAACAA+CGG | 0.677508 | 4_4:+38626535 | None:intergenic |
| TCTTTCGAGAAAACAATCAG+GGG | 0.694510 | 4_4:-38627280 | Msa0679980:CDS |
| TGGGAAAGGAGAAAATGAAG+GGG | 0.695621 | 4_4:+38631267 | None:intergenic |
| GTAGAGACTAACAGTGATGG+CGG | 0.713973 | 4_4:-38628775 | Msa0679980:CDS |
| AGGGGCGGATGCTTTCATAG+GGG | 0.716980 | 4_4:+38626419 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATACTTAAAAAATTAATAAG+GGG | + | chr4_4:38627091-38627110 | None:intergenic | 10.0% |
| !!! | AATATAACAACTTATTTTAA+TGG | + | chr4_4:38627565-38627584 | None:intergenic | 10.0% |
| !! | TTAGTTTAATATACATATAT+AGG | - | chr4_4:38628157-38628176 | Msa0679980:intron | 10.0% |
| !!! | TGATTAAGTATAATTTTTTT+AGG | + | chr4_4:38628504-38628523 | None:intergenic | 10.0% |
| !! | AAATATGATTAAAGTTAAAT+AGG | - | chr4_4:38630026-38630045 | Msa0679980:intron | 10.0% |
| !! | AATATGATTAAAGTTAAATA+GGG | - | chr4_4:38630027-38630046 | Msa0679980:intron | 10.0% |
| !! | TAGAATATAATTATATGTGT+TGG | - | chr4_4:38626681-38626700 | Msa0679980:three_prime_UTR | 15.0% |
| !! | TGATATATGATAAAACATTA+TGG | + | chr4_4:38626916-38626935 | None:intergenic | 15.0% |
| !! | TACTTAAAAAATTAATAAGG+GGG | + | chr4_4:38627090-38627109 | None:intergenic | 15.0% |
| !!! | TAAGTATATGTTTGATTTTT+TGG | - | chr4_4:38627104-38627123 | Msa0679980:intron | 15.0% |
| !! | TATATTGTAGAATTCATATT+TGG | - | chr4_4:38627579-38627598 | Msa0679980:intron | 15.0% |
| !! | ATATTGTAGAATTCATATTT+GGG | - | chr4_4:38627580-38627599 | Msa0679980:intron | 15.0% |
| !!! | TGATTAGCTTTTAATATTAA+GGG | + | chr4_4:38627624-38627643 | None:intergenic | 15.0% |
| !! | AAACTAAAAATAAAAATTGG+CGG | + | chr4_4:38628144-38628163 | None:intergenic | 15.0% |
| !!! | TTTTCTTATTTTTCATAGTA+AGG | - | chr4_4:38628295-38628314 | Msa0679980:intron | 15.0% |
| !!! | TATGGTTTTCATTTTTTATT+TGG | - | chr4_4:38629032-38629051 | Msa0679980:CDS | 15.0% |
| !! | AAAAAAATAAAAAATCAGCA+GGG | + | chr4_4:38629396-38629415 | None:intergenic | 15.0% |
| !! | TAAAAAAATAAAAAATCAGC+AGG | + | chr4_4:38629397-38629416 | None:intergenic | 15.0% |
| !! | ATAAGATGAAAGAAATAATT+TGG | + | chr4_4:38629704-38629723 | None:intergenic | 15.0% |
| !! | ATATGATTAAAGTTAAATAG+GGG | - | chr4_4:38630028-38630047 | Msa0679980:intron | 15.0% |
| !! | AAAATACCAAACTTAAAATA+TGG | + | chr4_4:38630687-38630706 | None:intergenic | 15.0% |
| !!! | TTATAAATTTAGCTTGTATT+GGG | + | chr4_4:38631386-38631405 | None:intergenic | 15.0% |
| !! | CTATCTTCTCAAATTATTAT+CGG | + | chr4_4:38626664-38626683 | None:intergenic | 20.0% |
| !!! | TGATTTTCTCAAATTATTAG+CGG | + | chr4_4:38627309-38627328 | None:intergenic | 20.0% |
| !!! | CTGATTAGCTTTTAATATTA+AGG | + | chr4_4:38627625-38627644 | None:intergenic | 20.0% |
| !! | CTTAATATTAAAAGCTAATC+AGG | - | chr4_4:38627623-38627642 | Msa0679980:intron | 20.0% |
| !! | ATTCTTACAATGTTGTTAAA+TGG | - | chr4_4:38627652-38627671 | Msa0679980:intron | 20.0% |
| !!! | ACTACTTTCTTTTTTATTCT+AGG | - | chr4_4:38627838-38627857 | Msa0679980:intron | 20.0% |
| !!! | CTACTTTCTTTTTTATTCTA+GGG | - | chr4_4:38627839-38627858 | Msa0679980:intron | 20.0% |
| !!! | TTTTCAATAGAAAGAAAAGA+AGG | + | chr4_4:38627865-38627884 | None:intergenic | 20.0% |
| !! | AACTAAAAATAAAAATTGGC+GGG | + | chr4_4:38628143-38628162 | None:intergenic | 20.0% |
| !! | ATAACAGCTTATGTTAAAAA+AGG | - | chr4_4:38628182-38628201 | Msa0679980:intron | 20.0% |
| !! | TAACAGCTTATGTTAAAAAA+GGG | - | chr4_4:38628183-38628202 | Msa0679980:intron | 20.0% |
| !!! | AAGCTCTTAATTTTAATTAG+AGG | - | chr4_4:38628224-38628243 | Msa0679980:intron | 20.0% |
| !! | ATTATACTTAATCATTGACA+TGG | - | chr4_4:38628510-38628529 | Msa0679980:intron | 20.0% |
| !!! | TTTCATTTTTTATTTGGATC+TGG | - | chr4_4:38629038-38629057 | Msa0679980:CDS | 20.0% |
| !!! | GTTTACAACTATTTTGTTAA+GGG | + | chr4_4:38629095-38629114 | None:intergenic | 20.0% |
| !!! | AGTTTACAACTATTTTGTTA+AGG | + | chr4_4:38629096-38629115 | None:intergenic | 20.0% |
| !! | ATGATAAGATTAAGTTTAGA+TGG | - | chr4_4:38629624-38629643 | Msa0679980:intron | 20.0% |
| !!! | TTGGAAATTTTATACTTTTG+AGG | + | chr4_4:38629902-38629921 | None:intergenic | 20.0% |
| !! | TATGATTAAAGTTAAATAGG+GGG | - | chr4_4:38630029-38630048 | Msa0679980:intron | 20.0% |
| !!! | TTCTTTTTCATGAATATTTG+AGG | + | chr4_4:38630253-38630272 | None:intergenic | 20.0% |
| !!! | AAATTCAAAGTGAAAGTTTT+CGG | + | chr4_4:38630291-38630310 | None:intergenic | 20.0% |
| !! | AAATATTTCATAACCAGAAT+TGG | - | chr4_4:38630376-38630395 | Msa0679980:intron | 20.0% |
| !!! | TCTACAAACTTACATTTTTT+TGG | + | chr4_4:38631138-38631157 | None:intergenic | 20.0% |
| !! | TTACCTCTAATAATATACAT+TGG | + | chr4_4:38631240-38631259 | None:intergenic | 20.0% |
| !! | AGGTAACTGAATATAAAATA+TGG | - | chr4_4:38631254-38631273 | Msa0679980:CDS | 20.0% |
| !!! | GTTATAAATTTAGCTTGTAT+TGG | + | chr4_4:38631387-38631406 | None:intergenic | 20.0% |
| ! | TTGCTGCTATAACAATAATT+TGG | - | chr4_4:38626554-38626573 | Msa0679980:three_prime_UTR | 25.0% |
| ! | CAGAAATACAATATTCAGTT+CGG | - | chr4_4:38626746-38626765 | Msa0679980:CDS | 25.0% |
| ! | AAAAATTAATAAGGGGGTTA+AGG | + | chr4_4:38627084-38627103 | None:intergenic | 25.0% |
| ! | TTGTTGATATATTCAACTCA+AGG | - | chr4_4:38627411-38627430 | Msa0679980:intron | 25.0% |
| ! | TGTTGATATATTCAACTCAA+GGG | - | chr4_4:38627412-38627431 | Msa0679980:intron | 25.0% |
| ! | TTATTTGATCGGGAATTTAA+TGG | - | chr4_4:38627471-38627490 | Msa0679980:CDS | 25.0% |
| ! | TACAGTATGAAATATAAGCA+AGG | + | chr4_4:38627500-38627519 | None:intergenic | 25.0% |
| ! | AAAAGAAAGTAGTGATTAGA+AGG | + | chr4_4:38627831-38627850 | None:intergenic | 25.0% |
| ! | GCTTCATATTATGACTTTAA+TGG | - | chr4_4:38628270-38628289 | Msa0679980:intron | 25.0% |
| ! | AAAGGATAGGATAGAAATAA+TGG | + | chr4_4:38628476-38628495 | None:intergenic | 25.0% |
| !!! | TAATTTTTTTAGGTGCACAA+AGG | + | chr4_4:38628494-38628513 | None:intergenic | 25.0% |
| ! | TACATCACTCACTAAAATTA+TGG | + | chr4_4:38628595-38628614 | None:intergenic | 25.0% |
| ! | TTGAAGGATAGAGAATTAAA+CGG | - | chr4_4:38628639-38628658 | Msa0679980:intron | 25.0% |
| ! | CAAGAACTTGTGATTTAATA+TGG | - | chr4_4:38628673-38628692 | Msa0679980:intron | 25.0% |
| !!! | TTCAAGTTTGTCTTTTTTCT+TGG | - | chr4_4:38629148-38629167 | Msa0679980:intron | 25.0% |
| !! | TGTTCTTTATTTGCTAAAGT+CGG | - | chr4_4:38629313-38629332 | Msa0679980:intron | 25.0% |
| ! | GAACAAAGAATATAATTGAG+CGG | + | chr4_4:38629604-38629623 | None:intergenic | 25.0% |
| !!! | CTATTTCTGTCTTATCATAA+TGG | - | chr4_4:38629650-38629669 | Msa0679980:intron | 25.0% |
| ! | TCTAGTTAAATTCAAGAAGA+TGG | + | chr4_4:38629869-38629888 | None:intergenic | 25.0% |
| !!! | TCAATCTTTGTTGCTTATTT+TGG | - | chr4_4:38630139-38630158 | Msa0679980:intron | 25.0% |
| ! | TTTCATGAATATTTGAGGAA+CGG | + | chr4_4:38630248-38630267 | None:intergenic | 25.0% |
| ! | AAAAAGAAGTCAAAGAAGTA+CGG | - | chr4_4:38630265-38630284 | Msa0679980:intron | 25.0% |
| !! | AGTATTTTATCAATGACTGT+TGG | - | chr4_4:38630521-38630540 | Msa0679980:intron | 25.0% |
| !!! | AACGATCCATATTTTAAGTT+TGG | - | chr4_4:38630678-38630697 | Msa0679980:intron | 25.0% |
| ! | TATAGAGACAATAAAGACTT+AGG | - | chr4_4:38630961-38630980 | Msa0679980:intron | 25.0% |
| !! | AATTTCCAGAAGAATTTTGA+AGG | - | chr4_4:38630989-38631008 | Msa0679980:intron | 25.0% |
| !!! | AACTTACATTTTTTTGGTAC+AGG | + | chr4_4:38631132-38631151 | None:intergenic | 25.0% |
| ! | TAAGTTTGTAGATATTCTAC+TGG | - | chr4_4:38631146-38631165 | Msa0679980:intron | 25.0% |
| ! | CTTAAATAAGTGTACAACAA+CGG | + | chr4_4:38631172-38631191 | None:intergenic | 25.0% |
| ! | CATCCAATGTATATTATTAG+AGG | - | chr4_4:38631234-38631253 | Msa0679980:CDS | 25.0% |
| ! | TATTGTTATCTAGTGTTTGT+TGG | + | chr4_4:38631352-38631371 | None:intergenic | 25.0% |
| ! | GAATTGAAAGGTGTAAGAAT+TGG | + | chr4_4:38626410-38626429 | None:intergenic | 30.0% |
| !! | TATTGTATTTCTGAAGCAGA+AGG | + | chr4_4:38626739-38626758 | None:intergenic | 30.0% |
| !! | AGAGCATTATATTTTCTCTG+TGG | - | chr4_4:38626816-38626835 | Msa0679980:intron | 30.0% |
| ! | ATGTCTTATTCCAGTAAGTT+GGG | - | chr4_4:38626867-38626886 | Msa0679980:intron | 30.0% |
| !! | GTTTGAAGTCTTAGTTTTCT+TGG | - | chr4_4:38627196-38627215 | Msa0679980:intron | 30.0% |
| TTCAGTGTAGTTATATGTGT+CGG | - | chr4_4:38627334-38627353 | Msa0679980:intron | 30.0% | |
| AAATAACTGTTGTCAAGAAC+AGG | - | chr4_4:38627442-38627461 | Msa0679980:intron | 30.0% | |
| AGTATGAAATATAAGCAAGG+AGG | + | chr4_4:38627497-38627516 | None:intergenic | 30.0% | |
| ! | GCTTTTAATATTAAGGGCTA+GGG | + | chr4_4:38627618-38627637 | None:intergenic | 30.0% |
| ! | AGCTTTTAATATTAAGGGCT+AGG | + | chr4_4:38627619-38627638 | None:intergenic | 30.0% |
| ATGAACTTTCTTTCGCTTAA+CGG | - | chr4_4:38627908-38627927 | Msa0679980:intron | 30.0% | |
| ATGAAGCAAATGTTAATGCA+AGG | + | chr4_4:38628348-38628367 | None:intergenic | 30.0% | |
| ! | TTCATGCCTACAAATTTGTT+GGG | - | chr4_4:38628363-38628382 | Msa0679980:intron | 30.0% |
| TATTCATCAGTTGTAGAGTT+TGG | - | chr4_4:38628408-38628427 | Msa0679980:intron | 30.0% | |
| ! | AACCTATGTTTTCATGTCAT+TGG | - | chr4_4:38628534-38628553 | Msa0679980:intron | 30.0% |
| ! | TGTCTTGCAAACATTTTTGA+AGG | - | chr4_4:38628623-38628642 | Msa0679980:intron | 30.0% |
| TTGTGATTTAATATGGCGAA+TGG | - | chr4_4:38628680-38628699 | Msa0679980:intron | 30.0% | |
| AAATGTGAAGTTTACCTGTA+CGG | + | chr4_4:38629511-38629530 | None:intergenic | 30.0% | |
| ATGCAATAACAAACCTGAAA+AGG | + | chr4_4:38629835-38629854 | None:intergenic | 30.0% | |
| AACTTATCTGATGTGATGTT+TGG | + | chr4_4:38629921-38629940 | None:intergenic | 30.0% | |
| ! | TACAAATGCTAGTTTGTGAT+CGG | + | chr4_4:38629994-38630013 | None:intergenic | 30.0% |
| !! | GTTCTCTTTATCTCTTGTTT+TGG | - | chr4_4:38630348-38630367 | Msa0679980:intron | 30.0% |
| ATTCTTTCGAGAAAACAATC+AGG | - | chr4_4:38630422-38630441 | Msa0679980:intron | 30.0% | |
| TTCTTTCGAGAAAACAATCA+GGG | - | chr4_4:38630423-38630442 | Msa0679980:intron | 30.0% | |
| TCAAAAACTTCACTTTCTTG+AGG | - | chr4_4:38630581-38630600 | Msa0679980:intron | 30.0% | |
| CAAAAACTTCACTTTCTTGA+GGG | - | chr4_4:38630582-38630601 | Msa0679980:intron | 30.0% | |
| CGTTGTTGTACACTTATTTA+AGG | - | chr4_4:38631170-38631189 | Msa0679980:intron | 30.0% | |
| TTAGTTTCTAATCAAGATCG+AGG | + | chr4_4:38631319-38631338 | None:intergenic | 30.0% | |
| AGTCCAAAGTAAACCGAAAT+TGG | - | chr4_4:38626320-38626339 | Msa0679980:three_prime_UTR | 35.0% | |
| GTCCAAAGTAAACCGAAATT+GGG | - | chr4_4:38626321-38626340 | Msa0679980:three_prime_UTR | 35.0% | |
| TCCAAAGTAAACCGAAATTG+GGG | - | chr4_4:38626322-38626341 | Msa0679980:three_prime_UTR | 35.0% | |
| CATTGATAGATGGATAGAAC+GGG | + | chr4_4:38626355-38626374 | None:intergenic | 35.0% | |
| ! | GCATTGATAGATGGATAGAA+CGG | + | chr4_4:38626356-38626375 | None:intergenic | 35.0% |
| GACAAATCTAATGCTATCCA+TGG | + | chr4_4:38626386-38626405 | None:intergenic | 35.0% | |
| TTGGGAAAGGAGAAAATGAA+GGG | + | chr4_4:38626441-38626460 | None:intergenic | 35.0% | |
| TCTTAGTGATGAAACAGAAG+GGG | + | chr4_4:38626482-38626501 | None:intergenic | 35.0% | |
| CTCTTAGTGATGAAACAGAA+GGG | + | chr4_4:38626483-38626502 | None:intergenic | 35.0% | |
| ! | TATCGGTGTCTAAGTATCAA+AGG | + | chr4_4:38626647-38626666 | None:intergenic | 35.0% |
| CAACTTACTGGAATAAGACA+TGG | + | chr4_4:38626868-38626887 | None:intergenic | 35.0% | |
| ! | CATGTCTTATTCCAGTAAGT+TGG | - | chr4_4:38626866-38626885 | Msa0679980:intron | 35.0% |
| AGTTTAGATAACCAGAGCAT+TGG | - | chr4_4:38627157-38627176 | Msa0679980:intron | 35.0% | |
| TTCTTTCTAATCCAATGCTC+TGG | + | chr4_4:38627171-38627190 | None:intergenic | 35.0% | |
| TTCTTGGATGAATACCTTGT+TGG | - | chr4_4:38627212-38627231 | Msa0679980:intron | 35.0% | |
| TCTCAAATTATTAGCGGTGT+CGG | + | chr4_4:38627303-38627322 | None:intergenic | 35.0% | |
| ! | ACAGGCTTCTGTTATTTGAT+CGG | - | chr4_4:38627460-38627479 | Msa0679980:CDS | 35.0% |
| ATGTTGTTAAATGGCAGTCA+TGG | - | chr4_4:38627661-38627680 | Msa0679980:intron | 35.0% | |
| ! | GCTTAACGGCTTAATCTTTT+GGG | - | chr4_4:38627922-38627941 | Msa0679980:intron | 35.0% |
| TTATGTTAAAAAAGGGCCTC+TGG | - | chr4_4:38628190-38628209 | Msa0679980:intron | 35.0% | |
| CTTCATGCCTACAAATTTGT+TGG | - | chr4_4:38628362-38628381 | Msa0679980:intron | 35.0% | |
| ACTCTACAACTGATGAATAG+TGG | + | chr4_4:38628407-38628426 | None:intergenic | 35.0% | |
| GGATAGGATAGAAATAATGG+TGG | + | chr4_4:38628473-38628492 | None:intergenic | 35.0% | |
| !!! | TTTTTAGGTGCACAAAGGAT+AGG | + | chr4_4:38628489-38628508 | None:intergenic | 35.0% |
| TGCCAATGACATGAAAACAT+AGG | + | chr4_4:38628539-38628558 | None:intergenic | 35.0% | |
| TTTAGTGAGTGATGTAGATG+AGG | - | chr4_4:38628599-38628618 | Msa0679980:intron | 35.0% | |
| ! | CGAATGGATTTCAGAAATTC+TGG | - | chr4_4:38628696-38628715 | Msa0679980:CDS | 35.0% |
| CAATGCTCAACAAATAGAAC+AGG | - | chr4_4:38628752-38628771 | Msa0679980:CDS | 35.0% | |
| ! | TTTGTCTGGTTTCTTTGATC+AGG | - | chr4_4:38628867-38628886 | Msa0679980:intron | 35.0% |
| TGATCAAAATACATGCCTTG+AGG | + | chr4_4:38629348-38629367 | None:intergenic | 35.0% | |
| AGAATTACTACTTCTCTCTG+TGG | - | chr4_4:38629443-38629462 | Msa0679980:intron | 35.0% | |
| GAATTACTACTTCTCTCTGT+GGG | - | chr4_4:38629444-38629463 | Msa0679980:intron | 35.0% | |
| !!! | CTTGATAGTTTTTTCCGTAC+AGG | - | chr4_4:38629494-38629513 | Msa0679980:intron | 35.0% |
| ! | TGGTTTAACTTTCACCATCA+TGG | - | chr4_4:38629670-38629689 | Msa0679980:intron | 35.0% |
| ! | ATTTGGAACTTACACCATGA+TGG | + | chr4_4:38629687-38629706 | None:intergenic | 35.0% |
| TAACTTATAGCAGCCTGAAA+AGG | + | chr4_4:38629800-38629819 | None:intergenic | 35.0% | |
| CTGCTATAAGTTATGCGATT+CGG | - | chr4_4:38629807-38629826 | Msa0679980:intron | 35.0% | |
| TGCTATAAGTTATGCGATTC+GGG | - | chr4_4:38629808-38629827 | Msa0679980:intron | 35.0% | |
| TTCGCTTCTTATACCAATTC+TGG | + | chr4_4:38630392-38630411 | None:intergenic | 35.0% | |
| TCTTTCGAGAAAACAATCAG+GGG | - | chr4_4:38630424-38630443 | Msa0679980:intron | 35.0% | |
| ! | TCAATGACTGTTGGATTTTC+AGG | - | chr4_4:38630530-38630549 | Msa0679980:intron | 35.0% |
| !!! | TTGGATTTTCAGGTAAACCT+TGG | - | chr4_4:38630540-38630559 | Msa0679980:intron | 35.0% |
| ACACATGTTTGATGTTTCCA+AGG | + | chr4_4:38630560-38630579 | None:intergenic | 35.0% | |
| GTTGGTCGTTGGATAAAAAT+TGG | + | chr4_4:38630754-38630773 | None:intergenic | 35.0% | |
| TTATGCAGTCAGAACATTGT+TGG | + | chr4_4:38630772-38630791 | None:intergenic | 35.0% | |
| ! | AGTAAAGCGCTTTCAAGAAA+GGG | + | chr4_4:38630828-38630847 | None:intergenic | 35.0% |
| ! | TAGTAAAGCGCTTTCAAGAA+AGG | + | chr4_4:38630829-38630848 | None:intergenic | 35.0% |
| TCAACTATCGTTTAACACGT+TGG | - | chr4_4:38630850-38630869 | Msa0679980:intron | 35.0% | |
| TTCCAACATTTGAGGATGTA+GGG | + | chr4_4:38631068-38631087 | None:intergenic | 35.0% | |
| TTTCCAACATTTGAGGATGT+AGG | + | chr4_4:38631069-38631088 | None:intergenic | 35.0% | |
| ATGTAAGTAGTGCTTAGTTC+CGG | + | chr4_4:38631105-38631124 | None:intergenic | 35.0% | |
| !!! | TATTTAAGGCACCGTGTTTT+TGG | - | chr4_4:38631184-38631203 | Msa0679980:intron | 35.0% |
| TGTATGTCGAACCAAAAACA+CGG | + | chr4_4:38631198-38631217 | None:intergenic | 35.0% | |
| ACCCCAATTTCGGTTTACTT+TGG | + | chr4_4:38626326-38626345 | None:intergenic | 40.0% | |
| !!! | AGGGGTTTTGGAGAATTGAA+AGG | + | chr4_4:38626422-38626441 | None:intergenic | 40.0% |
| ! | AGGAGAAAATGAAGGGGTTT+TGG | + | chr4_4:38626434-38626453 | None:intergenic | 40.0% |
| TGGGAAAGGAGAAAATGAAG+GGG | + | chr4_4:38626440-38626459 | None:intergenic | 40.0% | |
| GTTGGGAAAGGAGAAAATGA+AGG | + | chr4_4:38626442-38626461 | None:intergenic | 40.0% | |
| TGTATGTGGAAAAAGCGGTT+GGG | + | chr4_4:38626459-38626478 | None:intergenic | 40.0% | |
| GCTCTTAGTGATGAAACAGA+AGG | + | chr4_4:38626484-38626503 | None:intergenic | 40.0% | |
| AAGCAGAAGGAACTACTCAT+CGG | + | chr4_4:38626726-38626745 | None:intergenic | 40.0% | |
| ! | CTTATTCCAGTAAGTTGGGT+CGG | - | chr4_4:38626871-38626890 | Msa0679980:intron | 40.0% |
| AGCATGATCACCTGAGAATA+TGG | - | chr4_4:38626988-38627007 | Msa0679980:intron | 40.0% | |
| GCATGATCACCTGAGAATAT+GGG | - | chr4_4:38626989-38627008 | Msa0679980:intron | 40.0% | |
| CATGATCACCTGAGAATATG+GGG | - | chr4_4:38626990-38627009 | Msa0679980:intron | 40.0% | |
| TACAGATACAGACACGAACA+CGG | - | chr4_4:38627249-38627268 | Msa0679980:CDS | 40.0% | |
| ! | CAGGCTTCTGTTATTTGATC+GGG | - | chr4_4:38627461-38627480 | Msa0679980:CDS | 40.0% |
| TCCCATAGCCAATTTGTGAA+GGG | - | chr4_4:38627725-38627744 | Msa0679980:intron | 40.0% | |
| TCCCTTCACAAATTGGCTAT+GGG | + | chr4_4:38627729-38627748 | None:intergenic | 40.0% | |
| ATCCCTTCACAAATTGGCTA+TGG | + | chr4_4:38627730-38627749 | None:intergenic | 40.0% | |
| GCAATAGCGTGTTTGTATAG+CGG | - | chr4_4:38627775-38627794 | Msa0679980:intron | 40.0% | |
| ! | TTAGAAGGCAGTGTTGTTGA+TGG | + | chr4_4:38627816-38627835 | None:intergenic | 40.0% |
| ! | CGCTTAACGGCTTAATCTTT+TGG | - | chr4_4:38627921-38627940 | Msa0679980:intron | 40.0% |
| !! | GCTTAATCTTTTGGGAGAAC+TGG | - | chr4_4:38627930-38627949 | Msa0679980:intron | 40.0% |
| TCTCTTTGACCGAGTAATCA+AGG | - | chr4_4:38627972-38627991 | Msa0679980:intron | 40.0% | |
| !! | ATGCAAAAGCCTTGCTTTTG+GGG | + | chr4_4:38628031-38628050 | None:intergenic | 40.0% |
| !! | CATGCAAAAGCCTTGCTTTT+GGG | + | chr4_4:38628032-38628051 | None:intergenic | 40.0% |
| ! | TCATGCAAAAGCCTTGCTTT+TGG | + | chr4_4:38628033-38628052 | None:intergenic | 40.0% |
| ! | AAAAGCAAGGCTTTTGCATG+AGG | - | chr4_4:38628032-38628051 | Msa0679980:intron | 40.0% |
| ! | AGCTTTAACCATTAGACCAG+AGG | + | chr4_4:38628209-38628228 | None:intergenic | 40.0% |
| !! | TGCCTACAAATTTGTTGGGA+CGG | - | chr4_4:38628367-38628386 | Msa0679980:intron | 40.0% |
| ! | TGTTTCTGCTGAGAGCTAAT+TGG | - | chr4_4:38628562-38628581 | Msa0679980:intron | 40.0% |
| !! | AGTATTGAGCGTGTGAGTTT+TGG | - | chr4_4:38628808-38628827 | Msa0679980:intron | 40.0% |
| CAAAGAATTCGCAACTGGAT+CGG | + | chr4_4:38628851-38628870 | None:intergenic | 40.0% | |
| ATCGTAGAGACTAACAGTGA+TGG | - | chr4_4:38628926-38628945 | Msa0679980:intron | 40.0% | |
| ! | AACTTTCAAGTACCCAAGAG+TGG | - | chr4_4:38628960-38628979 | Msa0679980:CDS | 40.0% |
| AGTACCCAAGAGTGGTTATT+AGG | - | chr4_4:38628968-38628987 | Msa0679980:CDS | 40.0% | |
| ACAATTCTGCACCAGTAAAC+AGG | - | chr4_4:38628993-38629012 | Msa0679980:CDS | 40.0% | |
| AAACAGGAAGATGACTGCAA+AGG | - | chr4_4:38629009-38629028 | Msa0679980:CDS | 40.0% | |
| !! | CAGAGAGGTATCATACAGAT+TGG | + | chr4_4:38629284-38629303 | None:intergenic | 40.0% |
| CAATCTGTATGATACCTCTC+TGG | - | chr4_4:38629282-38629301 | Msa0679980:intron | 40.0% | |
| TTGACGAGACTGGAAAACAA+AGG | + | chr4_4:38629539-38629558 | None:intergenic | 40.0% | |
| ! | TAATAGTGAGTTGACGAGAC+TGG | + | chr4_4:38629549-38629568 | None:intergenic | 40.0% |
| !! | ATTTTAATGCCCGCCTTTTC+AGG | - | chr4_4:38629784-38629803 | Msa0679980:intron | 40.0% |
| GAAATGACAATTGCTCTCTG+TGG | - | chr4_4:38630089-38630108 | Msa0679980:intron | 40.0% | |
| TATTTGAGGAACGGTTTCAC+TGG | + | chr4_4:38630239-38630258 | None:intergenic | 40.0% | |
| TAACAACAGAGAACGCTAAC+TGG | + | chr4_4:38630326-38630345 | None:intergenic | 40.0% | |
| GTATAGCACTTTCATCTCCA+AGG | - | chr4_4:38630452-38630471 | Msa0679980:intron | 40.0% | |
| AAAGTCCATAAATTGCAGCC+GGG | + | chr4_4:38630486-38630505 | None:intergenic | 40.0% | |
| CAAAGTCCATAAATTGCAGC+CGG | + | chr4_4:38630487-38630506 | None:intergenic | 40.0% | |
| GGCTGCAATTTATGGACTTT+GGG | - | chr4_4:38630486-38630505 | Msa0679980:intron | 40.0% | |
| ATCTGTCCATTAATGCAGTC+AGG | - | chr4_4:38630628-38630647 | Msa0679980:intron | 40.0% | |
| GTAGACAAACATCCCAAACA+TGG | + | chr4_4:38630917-38630936 | None:intergenic | 40.0% | |
| CTCAGCCTTCAAAATTCTTC+TGG | + | chr4_4:38630997-38631016 | None:intergenic | 40.0% | |
| !! | CAGAAGAATTTTGAAGGCTG+AGG | - | chr4_4:38630995-38631014 | Msa0679980:intron | 40.0% |
| !! | AAGAATTTTGAAGGCTGAGG+TGG | - | chr4_4:38630998-38631017 | Msa0679980:intron | 40.0% |
| ATAGTGTGATCTGCTGAACA+TGG | + | chr4_4:38631041-38631060 | None:intergenic | 40.0% | |
| TTCCCTACATCCTCAAATGT+TGG | - | chr4_4:38631063-38631082 | Msa0679980:intron | 40.0% | |
| CTGGTCATTTCCAACATTTG+AGG | + | chr4_4:38631076-38631095 | None:intergenic | 40.0% | |
| AGTAAACCGAAATTGGGGTG+AGG | - | chr4_4:38626327-38626346 | Msa0679980:three_prime_UTR | 45.0% | |
| GTGTATGTGGAAAAAGCGGT+TGG | + | chr4_4:38626460-38626479 | None:intergenic | 45.0% | |
| ! | AGGGGTGTATGTGGAAAAAG+CGG | + | chr4_4:38626464-38626483 | None:intergenic | 45.0% |
| ! | TGAAACAGAAGGGGTGTATG+TGG | + | chr4_4:38626473-38626492 | None:intergenic | 45.0% |
| GCTTCTCGTACTACTACTAC+AGG | - | chr4_4:38626502-38626521 | Msa0679980:three_prime_UTR | 45.0% | |
| CATCACATCCCCATATTCTC+AGG | + | chr4_4:38627001-38627020 | None:intergenic | 45.0% | |
| ! | ACCTTGTTGGCTATGAAGCA+CGG | - | chr4_4:38627225-38627244 | Msa0679980:CDS | 45.0% |
| CTCCCATAGCCAATTTGTGA+AGG | - | chr4_4:38627724-38627743 | Msa0679980:intron | 45.0% | |
| GCAGGAATCCCTTCACAAAT+TGG | + | chr4_4:38627736-38627755 | None:intergenic | 45.0% | |
| AAACACGCTATTGCAGCCTA+TGG | + | chr4_4:38627769-38627788 | None:intergenic | 45.0% | |
| GCTCAGCTACCTTGATTACT+CGG | + | chr4_4:38627984-38628003 | None:intergenic | 45.0% | |
| !! | TGCAAAAGCCTTGCTTTTGG+GGG | + | chr4_4:38628030-38628049 | None:intergenic | 45.0% |
| CACTAGCTCAAAGGTTGGAT+CGG | + | chr4_4:38628104-38628123 | None:intergenic | 45.0% | |
| TGCTTCACTAGCTCAAAGGT+TGG | + | chr4_4:38628109-38628128 | None:intergenic | 45.0% | |
| ACCTTTGAGCTAGTGAAGCA+AGG | - | chr4_4:38628109-38628128 | Msa0679980:intron | 45.0% | |
| CCTTTGAGCTAGTGAAGCAA+GGG | - | chr4_4:38628110-38628129 | Msa0679980:intron | 45.0% | |
| ! | GCTAGTGAAGCAAGGGTTTT+AGG | - | chr4_4:38628117-38628136 | Msa0679980:intron | 45.0% |
| AAAAAGGGCCTCTGGTCTAA+TGG | - | chr4_4:38628198-38628217 | Msa0679980:intron | 45.0% | |
| CACCGTCCCAACAAATTTGT+AGG | + | chr4_4:38628372-38628391 | None:intergenic | 45.0% | |
| CCAGACAAAGAATTCGCAAC+TGG | + | chr4_4:38628856-38628875 | None:intergenic | 45.0% | |
| CCAGTTGCGAATTCTTTGTC+TGG | - | chr4_4:38628853-38628872 | Msa0679980:intron | 45.0% | |
| GTAGAGACTAACAGTGATGG+CGG | - | chr4_4:38628929-38628948 | Msa0679980:intron | 45.0% | |
| GTCGCCTAATAACCACTCTT+GGG | + | chr4_4:38628975-38628994 | None:intergenic | 45.0% | |
| TGTCGCCTAATAACCACTCT+TGG | + | chr4_4:38628976-38628995 | None:intergenic | 45.0% | |
| GCAGTCATCTTCCTGTTTAC+TGG | + | chr4_4:38629007-38629026 | None:intergenic | 45.0% | |
| GGAAGATGACTGCAAAGGTA+TGG | - | chr4_4:38629014-38629033 | Msa0679980:CDS | 45.0% | |
| AGAACATACTGAGTCCAGAG+AGG | + | chr4_4:38629299-38629318 | None:intergenic | 45.0% | |
| AGTCGGTAACACTTACCTCA+AGG | - | chr4_4:38629330-38629349 | Msa0679980:intron | 45.0% | |
| CTACTTCTCTCTGTGGGTAT+TGG | - | chr4_4:38629450-38629469 | Msa0679980:intron | 45.0% | |
| !! | TCTCTCTGTGGGTATTGGAT+TGG | - | chr4_4:38629455-38629474 | Msa0679980:intron | 45.0% |
| !! | CTCTCTGTGGGTATTGGATT+GGG | - | chr4_4:38629456-38629475 | Msa0679980:intron | 45.0% |
| ! | GGTATTGGATTGGGTTGTAG+CGG | - | chr4_4:38629465-38629484 | Msa0679980:intron | 45.0% |
| ACGCACTTAGACAACATGAG+TGG | + | chr4_4:38629744-38629763 | None:intergenic | 45.0% | |
| TTATAGCAGCCTGAAAAGGC+GGG | + | chr4_4:38629796-38629815 | None:intergenic | 45.0% | |
| CTTATAGCAGCCTGAAAAGG+CGG | + | chr4_4:38629797-38629816 | None:intergenic | 45.0% | |
| AAGTTAAATAGGGGGAGCCT+TGG | - | chr4_4:38630037-38630056 | Msa0679980:intron | 45.0% | |
| CATGTTGATACAGGAGCTGA+AGG | + | chr4_4:38630204-38630223 | None:intergenic | 45.0% | |
| TGGTGTCTGCATGTTGATAC+AGG | + | chr4_4:38630213-38630232 | None:intergenic | 45.0% | |
| AGGAACGGTTTCACTGGATA+TGG | + | chr4_4:38630233-38630252 | None:intergenic | 45.0% | |
| GAGAAAACAATCAGGGGTAG+CGG | - | chr4_4:38630430-38630449 | Msa0679980:intron | 45.0% | |
| CGGCTGCAATTTATGGACTT+TGG | - | chr4_4:38630485-38630504 | Msa0679980:intron | 45.0% | |
| CAAGGTCCTGACTGCATTAA+TGG | + | chr4_4:38630637-38630656 | None:intergenic | 45.0% | |
| CATTAATGCAGTCAGGACCT+TGG | - | chr4_4:38630635-38630654 | Msa0679980:intron | 45.0% | |
| ACTTGATCCAACAGCTACCA+AGG | + | chr4_4:38630655-38630674 | None:intergenic | 45.0% | |
| GTCAGAACATTGTTGGTCGT+TGG | + | chr4_4:38630765-38630784 | None:intergenic | 45.0% | |
| GCGCTTTCAAGAAAGGGATT+TGG | + | chr4_4:38630822-38630841 | None:intergenic | 45.0% | |
| ACAAACATCCCAAACATGGC+TGG | + | chr4_4:38630913-38630932 | None:intergenic | 45.0% | |
| ! | AAGATCGAGGTTCTAGTCAG+GGG | + | chr4_4:38631306-38631325 | None:intergenic | 45.0% |
| ! | CAAGATCGAGGTTCTAGTCA+GGG | + | chr4_4:38631307-38631326 | None:intergenic | 45.0% |
| ! | TCAAGATCGAGGTTCTAGTC+AGG | + | chr4_4:38631308-38631327 | None:intergenic | 45.0% |
| !!! | TTTTTATAATATTTTGTTTT+TGG | - | chr4_4:38626938-38626957 | Msa0679980:intron | 5.0% |
| !! | TATACTTAAAAAATTAATAA+GGG | + | chr4_4:38627092-38627111 | None:intergenic | 5.0% |
| !! | ATATACTTAAAAAATTAATA+AGG | + | chr4_4:38627093-38627112 | None:intergenic | 5.0% |
| !! | ATTAAACTAAAAATAAAAAT+TGG | + | chr4_4:38628147-38628166 | None:intergenic | 5.0% |
| !! | GGCAGCACAGCATTGATAGA+TGG | + | chr4_4:38626365-38626384 | None:intergenic | 50.0% |
| CTATCAATGCTGTGCTGCCA+TGG | - | chr4_4:38626366-38626385 | Msa0679980:three_prime_UTR | 50.0% | |
| GTGGAAAAAGCGGTTGGGAA+AGG | + | chr4_4:38626454-38626473 | None:intergenic | 50.0% | |
| ATGTAGCCGACCCAACTTAC+TGG | + | chr4_4:38626880-38626899 | None:intergenic | 50.0% | |
| TCCGTGCTTCATAGCCAACA+AGG | + | chr4_4:38627229-38627248 | None:intergenic | 50.0% | |
| ! | TCCTCAGACTAGTTGTGTCC+CGG | + | chr4_4:38627374-38627393 | None:intergenic | 50.0% |
| TCCACCACATCATTCCACCT+TGG | + | chr4_4:38627692-38627711 | None:intergenic | 50.0% | |
| TTGTGAAGGGATTCCTGCCA+TGG | - | chr4_4:38627738-38627757 | Msa0679980:intron | 50.0% | |
| ! | GAAGGCAGTGTTGTTGATGG+CGG | + | chr4_4:38627813-38627832 | None:intergenic | 50.0% |
| ! | AGCAAGGCTTTTGCATGAGG+TGG | - | chr4_4:38628035-38628054 | Msa0679980:intron | 50.0% |
| TTAGCACCCGATAGCATTGC+AGG | - | chr4_4:38628077-38628096 | Msa0679980:intron | 50.0% | |
| TAGCACCCGATAGCATTGCA+GGG | - | chr4_4:38628078-38628097 | Msa0679980:intron | 50.0% | |
| CCCTTGCTTCACTAGCTCAA+AGG | + | chr4_4:38628113-38628132 | None:intergenic | 50.0% | |
| GTGCTAGCAACACACTCTGT+AGG | - | chr4_4:38628248-38628267 | Msa0679980:intron | 50.0% | |
| !! | CAAATTTGTTGGGACGGTGC+TGG | - | chr4_4:38628373-38628392 | Msa0679980:intron | 50.0% |
| TTCGCAACTGGATCGGTACA+AGG | + | chr4_4:38628844-38628863 | None:intergenic | 50.0% | |
| !! | ATGCGATTCGGGTCCTTTTC+AGG | - | chr4_4:38629819-38629838 | Msa0679980:intron | 50.0% |
| ACAACTTTACCGTTGCGCCA+AGG | + | chr4_4:38630057-38630076 | None:intergenic | 50.0% | |
| ATCTCCAAGGCTTGTGATCC+CGG | - | chr4_4:38630465-38630484 | Msa0679980:intron | 50.0% | |
| GTGATCCCGGCTGCAATTTA+TGG | - | chr4_4:38630478-38630497 | Msa0679980:intron | 50.0% | |
| AGCTTGTGCCAGCCATGTTT+GGG | - | chr4_4:38630902-38630921 | Msa0679980:intron | 50.0% | |
| TGGAAATGACCAGCTGCATC+CGG | - | chr4_4:38631083-38631102 | Msa0679980:intron | 50.0% | |
| CGGGAACCTCACCCCAATTT+CGG | + | chr4_4:38626336-38626355 | None:intergenic | 55.0% | |
| TGTCGTGTCTGTGTCGTGTC+TGG | + | chr4_4:38627278-38627297 | None:intergenic | 55.0% | |
| ! | ACCGGGACACAACTAGTCTG+AGG | - | chr4_4:38627370-38627389 | Msa0679980:intron | 55.0% |
| GCTGCCAAGGTGGAATGATG+TGG | - | chr4_4:38627685-38627704 | Msa0679980:intron | 55.0% | |
| GCCAAGGTGGAATGATGTGG+TGG | - | chr4_4:38627688-38627707 | Msa0679980:intron | 55.0% | |
| TGAAGGGATTCCTGCCATGG+CGG | - | chr4_4:38627741-38627760 | Msa0679980:intron | 55.0% | |
| !! | GCAGTGTTGTTGATGGCGGA+AGG | + | chr4_4:38627809-38627828 | None:intergenic | 55.0% |
| GAGACGCTGATACCACATCG+CGG | + | chr4_4:38627956-38627975 | None:intergenic | 55.0% | |
| ACCTCAAGCCCCCAAAAGCA+AGG | - | chr4_4:38628019-38628038 | Msa0679980:intron | 55.0% | |
| ATCGGCCCTGCAATGCTATC+GGG | + | chr4_4:38628086-38628105 | None:intergenic | 55.0% | |
| GATCGGCCCTGCAATGCTAT+CGG | + | chr4_4:38628087-38628106 | None:intergenic | 55.0% | |
| ! | GTCAGGACCTTGGTAGCTGT+TGG | - | chr4_4:38630645-38630664 | Msa0679980:intron | 55.0% |
| ACATGGCTGGCACAAGCTGA+GGG | + | chr4_4:38630900-38630919 | None:intergenic | 55.0% | |
| AACATGGCTGGCACAAGCTG+AGG | + | chr4_4:38630901-38630920 | None:intergenic | 55.0% | |
| CAGCTTGTGCCAGCCATGTT+TGG | - | chr4_4:38630901-38630920 | Msa0679980:intron | 55.0% | |
| TGCTTAGTTCCGGATGCAGC+TGG | + | chr4_4:38631095-38631114 | None:intergenic | 55.0% | |
| CGGATGCTTTCATAGGGGAG+GGG | + | chr4_4:38631283-38631302 | None:intergenic | 55.0% | |
| GCGGATGCTTTCATAGGGGA+GGG | + | chr4_4:38631284-38631303 | None:intergenic | 55.0% | |
| AGGGGCGGATGCTTTCATAG+GGG | + | chr4_4:38631288-38631307 | None:intergenic | 55.0% | |
| CAGGGGCGGATGCTTTCATA+GGG | + | chr4_4:38631289-38631308 | None:intergenic | 55.0% | |
| TCAGGGGCGGATGCTTTCAT+AGG | + | chr4_4:38631290-38631309 | None:intergenic | 55.0% | |
| ! | ATCGAGGTTCTAGTCAGGGG+CGG | + | chr4_4:38631303-38631322 | None:intergenic | 55.0% |
| GTCGGACACGTGTCTGACAC+CGG | - | chr4_4:38627352-38627371 | Msa0679980:intron | 60.0% | |
| TCGGACACGTGTCTGACACC+GGG | - | chr4_4:38627353-38627372 | Msa0679980:intron | 60.0% | |
| !! | GCTTTTGGGGGCTTGAGGTG+AGG | + | chr4_4:38628018-38628037 | None:intergenic | 60.0% |
| !! | GCCTTGCTTTTGGGGGCTTG+AGG | + | chr4_4:38628023-38628042 | None:intergenic | 60.0% |
| GGCGGATGCTTTCATAGGGG+AGG | + | chr4_4:38631285-38631304 | None:intergenic | 60.0% | |
| TGGCAGTCATGGCGCTGCCA+AGG | - | chr4_4:38627672-38627691 | Msa0679980:intron | 65.0% | |
| CAGTCATGGCGCTGCCAAGG+TGG | - | chr4_4:38627675-38627694 | Msa0679980:intron | 65.0% | |
| !! | TCCTGCCATGGCGGTGCCAT+AGG | - | chr4_4:38627750-38627769 | Msa0679980:intron | 65.0% |
| TGCAGCCTATGGCACCGCCA+TGG | + | chr4_4:38627758-38627777 | None:intergenic | 65.0% | |
| TGGGAGAACTGGCCGCGATG+TGG | - | chr4_4:38627941-38627960 | Msa0679980:intron | 65.0% | |
| TAGGGGGAGCCTTGGCGCAA+CGG | - | chr4_4:38630045-38630064 | Msa0679980:intron | 65.0% | |
| GCAGCCGGGATCACAAGCCT+TGG | + | chr4_4:38630472-38630491 | None:intergenic | 65.0% | |
| GCCTATGGCACCGCCATGGC+AGG | + | chr4_4:38627754-38627773 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 38626312 | 38631414 | 38626312 | ID=Msa0679980;Name=Msa0679980 |
| chr4_4 | mRNA | 38626312 | 38631414 | 38626312 | ID=Msa0679980-mRNA-1;Parent=Msa0679980;Name=Msa0679980-mRNA-1;_AED=0.37;_eAED=0.37;_QI=73|0.5|0.71|1|1|1|7|406|253 |
| chr4_4 | exon | 38626312 | 38626822 | 38626312 | ID=Msa0679980-mRNA-1:exon:9123;Parent=Msa0679980-mRNA-1 |
| chr4_4 | exon | 38627216 | 38627333 | 38627216 | ID=Msa0679980-mRNA-1:exon:9122;Parent=Msa0679980-mRNA-1 |
| chr4_4 | exon | 38627445 | 38627534 | 38627445 | ID=Msa0679980-mRNA-1:exon:9121;Parent=Msa0679980-mRNA-1 |
| chr4_4 | exon | 38627886 | 38627920 | 38627886 | ID=Msa0679980-mRNA-1:exon:9120;Parent=Msa0679980-mRNA-1 |
| chr4_4 | exon | 38628696 | 38628800 | 38628696 | ID=Msa0679980-mRNA-1:exon:9119;Parent=Msa0679980-mRNA-1 |
| chr4_4 | exon | 38628953 | 38629122 | 38628953 | ID=Msa0679980-mRNA-1:exon:9118;Parent=Msa0679980-mRNA-1 |
| chr4_4 | exon | 38631203 | 38631414 | 38631203 | ID=Msa0679980-mRNA-1:exon:9117;Parent=Msa0679980-mRNA-1 |
| chr4_4 | five_prime_UTR | 38631342 | 38631414 | 38631342 | ID=Msa0679980-mRNA-1:five_prime_utr;Parent=Msa0679980-mRNA-1 |
| chr4_4 | CDS | 38631203 | 38631341 | 38631203 | ID=Msa0679980-mRNA-1:cds;Parent=Msa0679980-mRNA-1 |
| chr4_4 | CDS | 38628953 | 38629122 | 38628953 | ID=Msa0679980-mRNA-1:cds;Parent=Msa0679980-mRNA-1 |
| chr4_4 | CDS | 38628696 | 38628800 | 38628696 | ID=Msa0679980-mRNA-1:cds;Parent=Msa0679980-mRNA-1 |
| chr4_4 | CDS | 38627886 | 38627920 | 38627886 | ID=Msa0679980-mRNA-1:cds;Parent=Msa0679980-mRNA-1 |
| chr4_4 | CDS | 38627445 | 38627534 | 38627445 | ID=Msa0679980-mRNA-1:cds;Parent=Msa0679980-mRNA-1 |
| chr4_4 | CDS | 38627216 | 38627333 | 38627216 | ID=Msa0679980-mRNA-1:cds;Parent=Msa0679980-mRNA-1 |
| chr4_4 | CDS | 38626718 | 38626822 | 38626718 | ID=Msa0679980-mRNA-1:cds;Parent=Msa0679980-mRNA-1 |
| chr4_4 | three_prime_UTR | 38626312 | 38626717 | 38626312 | ID=Msa0679980-mRNA-1:three_prime_utr;Parent=Msa0679980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
