Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0641440 | XP_024636833.1 | 73.556 | 329 | 15 | 3 | 1 | 269 | 1 | 317 | 6.53e-160 | 457 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0641440 | Msa0679980 | 0.828530 | 8.540087e-55 | -8.615850e-47 |
| Msa0597510 | Msa0641440 | 0.814639 | 1.390554e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0641440 | MtrunA17_Chr4g0026091 | 73.556 | 329 | 15 | 3 | 1 | 269 | 1 | 317 | 6.01e-164 | 457 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0641440 | AT5G22340.1 | 47.887 | 284 | 78 | 6 | 54 | 269 | 42 | 323 | 1.06e-73 | 228 |
| Msa0641440 | AT5G22340.2 | 46.694 | 242 | 73 | 5 | 54 | 241 | 42 | 281 | 6.02e-57 | 186 |
Find 63 sgRNAs with CRISPR-Local
Find 301 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAGTCATCTTCCTGTTTAC+TGG | 0.163264 | 4_3:-41977103 | None:intergenic |
| GTGATCCCGGCTGCAATTTA+TGG | 0.223863 | 4_3:+41978582 | Msa0641440:CDS |
| CTCAGCCTTCAAAATTCTTC+TGG | 0.224073 | 4_3:-41979099 | None:intergenic |
| CAGCTTGTGCCAGCCATGTT+TGG | 0.234831 | 4_3:+41979006 | Msa0641440:intron |
| GGCTGCAATTTATGGACTTT+GGG | 0.259928 | 4_3:+41978590 | Msa0641440:CDS |
| CAAGAACTTGTGATTTAATA+TGG | 0.266135 | 4_3:+41976772 | Msa0641440:CDS |
| CGAATGGATTTCAGAAATTC+TGG | 0.279455 | 4_3:+41976795 | Msa0641440:CDS |
| AGGAGAAAATGAAGGGGTTT+TGG | 0.293414 | 4_3:-41974470 | None:intergenic |
| AGTACCCAAGAGTGGTTATT+AGG | 0.309012 | 4_3:+41977067 | Msa0641440:CDS |
| AGGAACGGTTTCACTGGATA+TGG | 0.321858 | 4_3:-41978335 | None:intergenic |
| CGGCTGCAATTTATGGACTT+TGG | 0.323212 | 4_3:+41978589 | Msa0641440:CDS |
| AGCTTGTGCCAGCCATGTTT+GGG | 0.359430 | 4_3:+41979007 | Msa0641440:intron |
| CATCCAATGTATATTATTAG+AGG | 0.371654 | 4_3:+41979340 | Msa0641440:three_prime_UTR |
| ATCTCCAAGGCTTGTGATCC+CGG | 0.387857 | 4_3:+41978569 | Msa0641440:CDS |
| CTGCTATAAGTTATGCGATT+GGG | 0.398513 | 4_3:+41977911 | Msa0641440:CDS |
| TGTCGCCTAATAACCACTCT+TGG | 0.416392 | 4_3:-41977072 | None:intergenic |
| GAGGTAACTGAATATAAATA+TGG | 0.420508 | 4_3:+41979359 | Msa0641440:three_prime_UTR |
| ACAATTCTGCACCAGTAAAC+AGG | 0.428920 | 4_3:+41977092 | Msa0641440:CDS |
| GAATTGAAAGGTGTAAGAAT+TGG | 0.434883 | 4_3:-41974446 | None:intergenic |
| ATTCTTTCGAGAAAACAATC+AGG | 0.440956 | 4_3:+41978526 | Msa0641440:CDS |
| TATTTGAGGAACGGTTTCAC+TGG | 0.443640 | 4_3:-41978341 | None:intergenic |
| TATAGAGACAATAAAGACTT+AGG | 0.447368 | 4_3:+41979066 | Msa0641440:CDS |
| ATGCAATAACAAACCTGAAA+AGG | 0.451361 | 4_3:-41977936 | None:intergenic |
| ATGTAAGTAGTGCTTAGTTC+CGG | 0.451394 | 4_3:-41979207 | None:intergenic |
| TTCCAACATTTGAGGATGTA+GGG | 0.453530 | 4_3:-41979170 | None:intergenic |
| TTCCCTACATCCTCAAATGT+TGG | 0.469783 | 4_3:+41979168 | Msa0641440:three_prime_UTR |
| TTGAAGGATAGAGAATTAAA+CGG | 0.472253 | 4_3:+41976738 | Msa0641440:CDS |
| TTTCCAACATTTGAGGATGT+AGG | 0.486280 | 4_3:-41979171 | None:intergenic |
| TTGTGATTTAATATGGCGAA+TGG | 0.496486 | 4_3:+41976779 | Msa0641440:CDS |
| TGGTGTCTGCATGTTGATAC+AGG | 0.506462 | 4_3:-41978315 | None:intergenic |
| CAAAGTCCATAAATTGCAGC+CGG | 0.510763 | 4_3:-41978588 | None:intergenic |
| CTGGTCATTTCCAACATTTG+AGG | 0.516416 | 4_3:-41979178 | None:intergenic |
| TGGAAATGACCAGCTGCATC+CGG | 0.517662 | 4_3:+41979188 | Msa0641440:three_prime_UTR |
| GTCGCCTAATAACCACTCTT+GGG | 0.520653 | 4_3:-41977071 | None:intergenic |
| CAATGCTCAACAAATAGAAC+AGG | 0.524035 | 4_3:+41976851 | Msa0641440:CDS |
| TGCTTAGTTCCGGATGCAGC+TGG | 0.525733 | 4_3:-41979197 | None:intergenic |
| TTTCATGAATATTTGAGGAA+CGG | 0.534985 | 4_3:-41978350 | None:intergenic |
| GACAAATCTAATGCTATCCA+TGG | 0.549721 | 4_3:-41974422 | None:intergenic |
| GCAGCCGGGATCACAAGCCT+TGG | 0.549722 | 4_3:-41978573 | None:intergenic |
| ACAAACATCCCAAACATGGC+TGG | 0.556898 | 4_3:-41979015 | None:intergenic |
| TGCTATAAGTTATGCGATTG+GGG | 0.558016 | 4_3:+41977912 | Msa0641440:CDS |
| GTATAGCACTTTCATCTCCA+AGG | 0.559840 | 4_3:+41978556 | Msa0641440:CDS |
| GTTGGGAAAGGAGAAAATGA+AGG | 0.563802 | 4_3:-41974478 | None:intergenic |
| TTCTTTCGAGAAAACAATCA+GGG | 0.581970 | 4_3:+41978527 | Msa0641440:CDS |
| GCTGCTATAAGTTATGCGAT+TGG | 0.586026 | 4_3:+41977910 | Msa0641440:CDS |
| TTACCTCTAATAATATACAT+TGG | 0.588813 | 4_3:-41979343 | None:intergenic |
| CATGTTGATACAGGAGCTGA+AGG | 0.591014 | 4_3:-41978306 | None:intergenic |
| GAGAAAACAATCAGGGGTAG+CGG | 0.601554 | 4_3:+41978534 | Msa0641440:CDS |
| TTGGGAAAGGAGAAAATGAA+GGG | 0.602720 | 4_3:-41974477 | None:intergenic |
| AAAGTCCATAAATTGCAGCC+GGG | 0.610396 | 4_3:-41978587 | None:intergenic |
| AACTTTCAAGTACCCAAGAG+TGG | 0.615621 | 4_3:+41977059 | Msa0641440:CDS |
| GTAGACAAACATCCCAAACA+TGG | 0.634660 | 4_3:-41979019 | None:intergenic |
| ATCGTAGAGACTAACAGTGA+TGG | 0.640233 | 4_3:+41977025 | Msa0641440:CDS |
| TTTAGTGAGTGATGTAGATG+AGG | 0.640687 | 4_3:+41976698 | Msa0641440:intron |
| GCTCTTAGTGATGAAACAGA+GGG | 0.642851 | 4_3:-41974520 | None:intergenic |
| AAACAGGAAGATGACTGCAA+AGG | 0.643231 | 4_3:+41977108 | Msa0641440:CDS |
| AGCTCTTAGTGATGAAACAG+AGG | 0.665687 | 4_3:-41974521 | None:intergenic |
| ATAGTGTGATCTGCTGAACA+TGG | 0.672212 | 4_3:-41979143 | None:intergenic |
| TGGGAAAGGAGAAAATGAAG+GGG | 0.687981 | 4_3:-41974476 | None:intergenic |
| TCTTTCGAGAAAACAATCAG+GGG | 0.694510 | 4_3:+41978528 | Msa0641440:CDS |
| TCTTAGTGATGAAACAGAGG+GGG | 0.703404 | 4_3:-41974518 | None:intergenic |
| GTAGAGACTAACAGTGATGG+CGG | 0.713973 | 4_3:+41977028 | Msa0641440:CDS |
| CTCTTAGTGATGAAACAGAG+GGG | 0.726001 | 4_3:-41974519 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATACTTAAAAAATTAATAAG+GGG | - | chr4_3:41975187-41975206 | None:intergenic | 10.0% |
| !!! | AATATAACAACTTATTTTAA+TGG | - | chr4_3:41975661-41975680 | None:intergenic | 10.0% |
| !! | TTAGTTTAATATACATATAT+AGG | + | chr4_3:41976254-41976273 | Msa0641440:intron | 10.0% |
| !!! | TGATTAAGTATAATTTTTTT+AGG | - | chr4_3:41976603-41976622 | None:intergenic | 10.0% |
| !! | AAATATGATTAAAGTTAAAT+AGG | + | chr4_3:41978131-41978150 | Msa0641440:intron | 10.0% |
| !! | AATATGATTAAAGTTAAATA+GGG | + | chr4_3:41978132-41978151 | Msa0641440:intron | 10.0% |
| !! | TAGAATATAATTATATGTGT+TGG | + | chr4_3:41974772-41974791 | Msa0641440:intron | 15.0% |
| !! | TGATATATGATAAAACATTA+TGG | - | chr4_3:41975012-41975031 | None:intergenic | 15.0% |
| !! | TACTTAAAAAATTAATAAGG+GGG | - | chr4_3:41975186-41975205 | None:intergenic | 15.0% |
| !!! | TAAGTATATGTTTGATTTTT+TGG | + | chr4_3:41975200-41975219 | Msa0641440:intron | 15.0% |
| !! | TATATTGTAGAATTCATATT+TGG | + | chr4_3:41975675-41975694 | Msa0641440:intron | 15.0% |
| !! | ATATTGTAGAATTCATATTT+GGG | + | chr4_3:41975676-41975695 | Msa0641440:intron | 15.0% |
| !!! | TGATTAGCTTTTAATATTAA+GGG | - | chr4_3:41975720-41975739 | None:intergenic | 15.0% |
| !! | AACTAAAAATAAAATATTGG+CGG | - | chr4_3:41976240-41976259 | None:intergenic | 15.0% |
| !!! | TTTTCTTATTTTTCATAGTA+AGG | + | chr4_3:41976392-41976411 | Msa0641440:intron | 15.0% |
| !!! | TATGGTTTTCATTTTTTATT+TGG | + | chr4_3:41977131-41977150 | Msa0641440:intron | 15.0% |
| !! | AAAAAAATAAAAAATCAGCA+GGG | - | chr4_3:41977498-41977517 | None:intergenic | 15.0% |
| !! | TAAAAAAATAAAAAATCAGC+AGG | - | chr4_3:41977499-41977518 | None:intergenic | 15.0% |
| !! | ATAAGATGAAAGAAATAATT+TGG | - | chr4_3:41977808-41977827 | None:intergenic | 15.0% |
| !! | ATATGATTAAAGTTAAATAG+GGG | + | chr4_3:41978133-41978152 | Msa0641440:intron | 15.0% |
| !! | ATAATACCAAACTTAAAATA+TGG | - | chr4_3:41978792-41978811 | None:intergenic | 15.0% |
| !! | CTATCTTCTCAAATTATTAT+CGG | - | chr4_3:41974755-41974774 | None:intergenic | 20.0% |
| !!! | TGATTTTCTCAAATTATTAG+CGG | - | chr4_3:41975405-41975424 | None:intergenic | 20.0% |
| !!! | CTGATTAGCTTTTAATATTA+AGG | - | chr4_3:41975721-41975740 | None:intergenic | 20.0% |
| !! | CTTAATATTAAAAGCTAATC+AGG | + | chr4_3:41975719-41975738 | Msa0641440:intron | 20.0% |
| !! | ATTCTTACAATGTTGTTAAA+TGG | + | chr4_3:41975748-41975767 | Msa0641440:intron | 20.0% |
| !!! | ACTACTTTCTTTTTTATTCT+AGG | + | chr4_3:41975934-41975953 | Msa0641440:intron | 20.0% |
| !!! | CTACTTTCTTTTTTATTCTA+GGG | + | chr4_3:41975935-41975954 | Msa0641440:intron | 20.0% |
| !!! | TTTTCAATAGAAAGAAAAGA+AGG | - | chr4_3:41975961-41975980 | None:intergenic | 20.0% |
| !! | ACTAAAAATAAAATATTGGC+GGG | - | chr4_3:41976239-41976258 | None:intergenic | 20.0% |
| !! | ATAACAGCTTATGTTAAAAA+AGG | + | chr4_3:41976279-41976298 | Msa0641440:intron | 20.0% |
| !! | TAACAGCTTATGTTAAAAAA+GGG | + | chr4_3:41976280-41976299 | Msa0641440:intron | 20.0% |
| !!! | AAGCTCTTAATTTTAATTAG+AGG | + | chr4_3:41976321-41976340 | Msa0641440:intron | 20.0% |
| !! | GCTTCATATTATAACTTTAA+TGG | + | chr4_3:41976367-41976386 | Msa0641440:intron | 20.0% |
| !! | ATTATACTTAATCATTGACA+TGG | + | chr4_3:41976609-41976628 | Msa0641440:intron | 20.0% |
| !!! | TTTCATTTTTTATTTGGATC+TGG | + | chr4_3:41977137-41977156 | Msa0641440:intron | 20.0% |
| !!! | GTTTACAACTATTTTGTTAA+GGG | - | chr4_3:41977194-41977213 | None:intergenic | 20.0% |
| !!! | AGTTTACAACTATTTTGTTA+AGG | - | chr4_3:41977195-41977214 | None:intergenic | 20.0% |
| !! | ATGATAAGATTAAGTTTAGA+TGG | + | chr4_3:41977726-41977745 | Msa0641440:intron | 20.0% |
| !! | ATTTCTATGTCTTATCATAA+TGG | + | chr4_3:41977754-41977773 | Msa0641440:intron | 20.0% |
| !!! | TGGAAAATTTTATACTTTTG+AGG | - | chr4_3:41978006-41978025 | None:intergenic | 20.0% |
| !! | TATGATTAAAGTTAAATAGG+GGG | + | chr4_3:41978134-41978153 | Msa0641440:intron | 20.0% |
| !!! | TTCTTTTTCATGAATATTTG+AGG | - | chr4_3:41978358-41978377 | None:intergenic | 20.0% |
| !!! | AAATTCAAAGTGAAAGTTTT+CGG | - | chr4_3:41978396-41978415 | None:intergenic | 20.0% |
| !! | AAATATTTCATAACCAGAAT+TGG | + | chr4_3:41978480-41978499 | Msa0641440:intron | 20.0% |
| !! | TTACCTCTAATAATATACAT+TGG | - | chr4_3:41979346-41979365 | None:intergenic | 20.0% |
| ! | CAGAAATACAATATTCAGTT+CGG | + | chr4_3:41974837-41974856 | Msa0641440:intron | 25.0% |
| ! | AAAAATTAATAAGGGGGTTA+AGG | - | chr4_3:41975180-41975199 | None:intergenic | 25.0% |
| ! | TTGTTGATATATTCAACTCA+AGG | + | chr4_3:41975507-41975526 | Msa0641440:intron | 25.0% |
| ! | TGTTGATATATTCAACTCAA+GGG | + | chr4_3:41975508-41975527 | Msa0641440:intron | 25.0% |
| ! | TTATTTGATCGGGAATTTAA+TGG | + | chr4_3:41975567-41975586 | Msa0641440:intron | 25.0% |
| ! | TACAGTATGAAATATAAGCA+AGG | - | chr4_3:41975596-41975615 | None:intergenic | 25.0% |
| ! | AAAAGAAAGTAGTGATTAGA+AGG | - | chr4_3:41975927-41975946 | None:intergenic | 25.0% |
| ! | AAAGGATAGGATAGAAATAA+TGG | - | chr4_3:41976575-41976594 | None:intergenic | 25.0% |
| !!! | TAATTTTTTTAGGTGCACAA+AGG | - | chr4_3:41976593-41976612 | None:intergenic | 25.0% |
| ! | TACATCACTCACTAAAATTA+TGG | - | chr4_3:41976694-41976713 | None:intergenic | 25.0% |
| ! | TTGAAGGATAGAGAATTAAA+CGG | + | chr4_3:41976738-41976757 | Msa0641440:CDS | 25.0% |
| ! | CAAGAACTTGTGATTTAATA+TGG | + | chr4_3:41976772-41976791 | Msa0641440:CDS | 25.0% |
| !!! | TTCAAGTTTGTCTTTTTTCT+TGG | + | chr4_3:41977248-41977267 | Msa0641440:intron | 25.0% |
| !! | TGTTCTTTATTTGCTAAAGT+CGG | + | chr4_3:41977413-41977432 | Msa0641440:intron | 25.0% |
| ! | GAACAAAGAATATAATTGAG+CGG | - | chr4_3:41977706-41977725 | None:intergenic | 25.0% |
| ! | TCTAGTTAAATTCAAGAAGA+TGG | - | chr4_3:41977973-41977992 | None:intergenic | 25.0% |
| !!! | TCAATCTTTGTTGCTTATTT+TGG | + | chr4_3:41978244-41978263 | Msa0641440:intron | 25.0% |
| ! | TTTCATGAATATTTGAGGAA+CGG | - | chr4_3:41978353-41978372 | None:intergenic | 25.0% |
| ! | AAAAAGAAGTCAAAGAAGTA+CGG | + | chr4_3:41978370-41978389 | Msa0641440:intron | 25.0% |
| !!! | GTATTTTATCAATGACTTGT+TGG | + | chr4_3:41978626-41978645 | Msa0641440:intron | 25.0% |
| !!! | AACGATCCATATTTTAAGTT+TGG | + | chr4_3:41978783-41978802 | Msa0641440:intron | 25.0% |
| ! | TATAGAGACAATAAAGACTT+AGG | + | chr4_3:41979066-41979085 | Msa0641440:CDS | 25.0% |
| !! | AATTTCCAGAAGAATTTTGA+AGG | + | chr4_3:41979094-41979113 | Msa0641440:CDS | 25.0% |
| !!! | AACTTACATTTTTTTGGTAC+AGG | - | chr4_3:41979237-41979256 | None:intergenic | 25.0% |
| !!! | TCTACGAACTTACATTTTTT+TGG | - | chr4_3:41979243-41979262 | None:intergenic | 25.0% |
| ! | CTTAAATAAGTGTACAACAA+CGG | - | chr4_3:41979278-41979297 | None:intergenic | 25.0% |
| ! | CATCCAATGTATATTATTAG+AGG | + | chr4_3:41979340-41979359 | Msa0641440:three_prime_UTR | 25.0% |
| ! | GAATTGAAAGGTGTAAGAAT+TGG | - | chr4_3:41974449-41974468 | None:intergenic | 30.0% |
| TGTATGTAGAAAAAGCTGTT+GGG | - | chr4_3:41974498-41974517 | None:intergenic | 30.0% | |
| !! | TATTGTATTTCTGAAGCAGA+AGG | - | chr4_3:41974830-41974849 | None:intergenic | 30.0% |
| ! | CACACATTATATTTTCTCTG+TGG | + | chr4_3:41974912-41974931 | Msa0641440:intron | 30.0% |
| ! | ATGTCTTATTCCAGTAAGTT+GGG | + | chr4_3:41974963-41974982 | Msa0641440:intron | 30.0% |
| !! | GTTTGAAGTCTTAGTTTTCT+TGG | + | chr4_3:41975292-41975311 | Msa0641440:intron | 30.0% |
| TTCAGTGTAGTTATATGTGT+CGG | + | chr4_3:41975430-41975449 | Msa0641440:intron | 30.0% | |
| AAATAACTGTTGTCAAGAAC+AGG | + | chr4_3:41975538-41975557 | Msa0641440:intron | 30.0% | |
| AGTATGAAATATAAGCAAGG+AGG | - | chr4_3:41975593-41975612 | None:intergenic | 30.0% | |
| ! | GCTTTTAATATTAAGGGCTA+GGG | - | chr4_3:41975714-41975733 | None:intergenic | 30.0% |
| ! | AGCTTTTAATATTAAGGGCT+AGG | - | chr4_3:41975715-41975734 | None:intergenic | 30.0% |
| ATGAACTTTCTTTCGCTTAA+CGG | + | chr4_3:41976004-41976023 | Msa0641440:intron | 30.0% | |
| ATGAAGCAAATGTTAATGCA+AGG | - | chr4_3:41976445-41976464 | None:intergenic | 30.0% | |
| ! | TTCATGCCTACAAATTTGTT+GGG | + | chr4_3:41976460-41976479 | Msa0641440:intron | 30.0% |
| TATTCATCAGTTGTAGAGTT+TGG | + | chr4_3:41976505-41976524 | Msa0641440:intron | 30.0% | |
| ! | AACCTATGTTTTCATGTCAT+TGG | + | chr4_3:41976633-41976652 | Msa0641440:intron | 30.0% |
| ! | TGTCTTGCAAACATTTTTGA+AGG | + | chr4_3:41976722-41976741 | Msa0641440:CDS | 30.0% |
| TTGTGATTTAATATGGCGAA+TGG | + | chr4_3:41976779-41976798 | Msa0641440:CDS | 30.0% | |
| AAATGTGAAGTTTACCTGTA+CGG | - | chr4_3:41977611-41977630 | None:intergenic | 30.0% | |
| ATGCAATAACAAACCTGAAA+AGG | - | chr4_3:41977939-41977958 | None:intergenic | 30.0% | |
| AACTTATCTGATGTGATGTT+TGG | - | chr4_3:41978026-41978045 | None:intergenic | 30.0% | |
| ! | TACAAATGCTAGTTTGTGAT+CGG | - | chr4_3:41978099-41978118 | None:intergenic | 30.0% |
| ATTCTTTCGAGAAAACAATC+AGG | + | chr4_3:41978526-41978545 | Msa0641440:CDS | 30.0% | |
| TTCTTTCGAGAAAACAATCA+GGG | + | chr4_3:41978527-41978546 | Msa0641440:CDS | 30.0% | |
| AAGTTCGTAGATATTCTACT+TGG | + | chr4_3:41979252-41979271 | Msa0641440:intron | 30.0% | |
| CGTTGTTGTACACTTATTTA+AGG | + | chr4_3:41979276-41979295 | Msa0641440:intron | 30.0% | |
| TTGGGAAAGGAGAAAATGAA+GGG | - | chr4_3:41974480-41974499 | None:intergenic | 35.0% | |
| GTGTATGTAGAAAAAGCTGT+TGG | - | chr4_3:41974499-41974518 | None:intergenic | 35.0% | |
| CAGCAAAATAAGAGGAGAAA+TGG | - | chr4_3:41974628-41974647 | None:intergenic | 35.0% | |
| CGTTATAGCAGCAAAATAAG+AGG | - | chr4_3:41974636-41974655 | None:intergenic | 35.0% | |
| ! | TATCGGTGTCTAAGTATCAA+AGG | - | chr4_3:41974738-41974757 | None:intergenic | 35.0% |
| CAACTTACTGGAATAAGACA+TGG | - | chr4_3:41974964-41974983 | None:intergenic | 35.0% | |
| ! | CATGTCTTATTCCAGTAAGT+TGG | + | chr4_3:41974962-41974981 | Msa0641440:intron | 35.0% |
| AGTTTAGATAACCAGAGCAT+TGG | + | chr4_3:41975253-41975272 | Msa0641440:intron | 35.0% | |
| TTCTTTCTAATCCAATGCTC+TGG | - | chr4_3:41975267-41975286 | None:intergenic | 35.0% | |
| TTCTTGGATGAATACCTTGT+TGG | + | chr4_3:41975308-41975327 | Msa0641440:intron | 35.0% | |
| TCTCAAATTATTAGCGGTGT+CGG | - | chr4_3:41975399-41975418 | None:intergenic | 35.0% | |
| ! | ACAGGCTTCTGTTATTTGAT+CGG | + | chr4_3:41975556-41975575 | Msa0641440:intron | 35.0% |
| ATGTTGTTAAATGGCAGTCA+TGG | + | chr4_3:41975757-41975776 | Msa0641440:intron | 35.0% | |
| ! | GCTTAACGGCTTAATCTTTT+GGG | + | chr4_3:41976018-41976037 | Msa0641440:intron | 35.0% |
| TTATGTTAAAAAAGGGCCTC+TGG | + | chr4_3:41976287-41976306 | Msa0641440:intron | 35.0% | |
| CTTCATGCCTACAAATTTGT+TGG | + | chr4_3:41976459-41976478 | Msa0641440:intron | 35.0% | |
| ACTCTACAACTGATGAATAG+TGG | - | chr4_3:41976504-41976523 | None:intergenic | 35.0% | |
| GGATAGGATAGAAATAATGG+TGG | - | chr4_3:41976572-41976591 | None:intergenic | 35.0% | |
| !!! | TTTTTAGGTGCACAAAGGAT+AGG | - | chr4_3:41976588-41976607 | None:intergenic | 35.0% |
| TGCCAATGACATGAAAACAT+AGG | - | chr4_3:41976638-41976657 | None:intergenic | 35.0% | |
| TTTAGTGAGTGATGTAGATG+AGG | + | chr4_3:41976698-41976717 | Msa0641440:intron | 35.0% | |
| ! | CGAATGGATTTCAGAAATTC+TGG | + | chr4_3:41976795-41976814 | Msa0641440:CDS | 35.0% |
| CAATGCTCAACAAATAGAAC+AGG | + | chr4_3:41976851-41976870 | Msa0641440:CDS | 35.0% | |
| ! | TTTGTCTGGTTTCTTTGATC+AGG | + | chr4_3:41976966-41976985 | Msa0641440:intron | 35.0% |
| !! | AAGAGAGGTATCATACAGAT+TGG | - | chr4_3:41977384-41977403 | None:intergenic | 35.0% |
| ATCAAAACATACATGCCTTG+AGG | - | chr4_3:41977448-41977467 | None:intergenic | 35.0% | |
| AGAATTACTACTTCTCTCTG+TGG | + | chr4_3:41977543-41977562 | Msa0641440:intron | 35.0% | |
| GAATTACTACTTCTCTCTGT+GGG | + | chr4_3:41977544-41977563 | Msa0641440:intron | 35.0% | |
| !!! | CTTGATAGTTTTTTCCGTAC+AGG | + | chr4_3:41977594-41977613 | Msa0641440:intron | 35.0% |
| ! | TGGTTTAACTTTCACCATCA+TGG | + | chr4_3:41977774-41977793 | Msa0641440:intron | 35.0% |
| ! | ATTTGGAACTTACACCATGA+TGG | - | chr4_3:41977791-41977810 | None:intergenic | 35.0% |
| TAACTTATAGCAGCCTGAAA+AGG | - | chr4_3:41977904-41977923 | None:intergenic | 35.0% | |
| CTGCTATAAGTTATGCGATT+GGG | + | chr4_3:41977911-41977930 | Msa0641440:CDS | 35.0% | |
| TGCTATAAGTTATGCGATTG+GGG | + | chr4_3:41977912-41977931 | Msa0641440:CDS | 35.0% | |
| !! | CGTTCTCTTATCTCTTGTTT+TGG | + | chr4_3:41978452-41978471 | Msa0641440:intron | 35.0% |
| TTCGCTTCTTATACCAATTC+TGG | - | chr4_3:41978496-41978515 | None:intergenic | 35.0% | |
| TCTTTCGAGAAAACAATCAG+GGG | + | chr4_3:41978528-41978547 | Msa0641440:CDS | 35.0% | |
| !!! | CAATGACTTGTTGGATTTTC+AGG | + | chr4_3:41978635-41978654 | Msa0641440:intron | 35.0% |
| !!! | TTGGATTTTCAGGTAAACCT+TGG | + | chr4_3:41978645-41978664 | Msa0641440:intron | 35.0% |
| ACACATGTTTGATGTTTCCA+AGG | - | chr4_3:41978665-41978684 | None:intergenic | 35.0% | |
| TCAAAAACCTCACTTTCTTG+AGG | + | chr4_3:41978686-41978705 | Msa0641440:intron | 35.0% | |
| CAAAAACCTCACTTTCTTGA+GGG | + | chr4_3:41978687-41978706 | Msa0641440:intron | 35.0% | |
| GTTGGTCGTTGGATAAAAAT+TGG | - | chr4_3:41978859-41978878 | None:intergenic | 35.0% | |
| TTATGCAGTCAGAACATTGT+TGG | - | chr4_3:41978877-41978896 | None:intergenic | 35.0% | |
| ! | AGTAAAGCGCTTTCAAGAAA+GGG | - | chr4_3:41978933-41978952 | None:intergenic | 35.0% |
| ! | TAGTAAAGCGCTTTCAAGAA+AGG | - | chr4_3:41978934-41978953 | None:intergenic | 35.0% |
| TCAACTATCGTTTAACACGT+TGG | + | chr4_3:41978955-41978974 | Msa0641440:intron | 35.0% | |
| TTCCAACATTTGAGGATGTA+GGG | - | chr4_3:41979173-41979192 | None:intergenic | 35.0% | |
| TTTCCAACATTTGAGGATGT+AGG | - | chr4_3:41979174-41979193 | None:intergenic | 35.0% | |
| ATGTAAGTAGTGCTTAGTTC+CGG | - | chr4_3:41979210-41979229 | None:intergenic | 35.0% | |
| !!! | TATTTAAGGCACCGTGTTTT+TGG | + | chr4_3:41979290-41979309 | Msa0641440:intron | 35.0% |
| TGTATGTCGAACCAAAAACA+CGG | - | chr4_3:41979304-41979323 | None:intergenic | 35.0% | |
| !!! | AGGGGTTTTGGAGAATTGAA+AGG | - | chr4_3:41974461-41974480 | None:intergenic | 40.0% |
| ! | AGGAGAAAATGAAGGGGTTT+TGG | - | chr4_3:41974473-41974492 | None:intergenic | 40.0% |
| TGGGAAAGGAGAAAATGAAG+GGG | - | chr4_3:41974479-41974498 | None:intergenic | 40.0% | |
| GTTGGGAAAGGAGAAAATGA+AGG | - | chr4_3:41974481-41974500 | None:intergenic | 40.0% | |
| GTAGAAAAAGCTGTTGGGAA+AGG | - | chr4_3:41974493-41974512 | None:intergenic | 40.0% | |
| TCTTAGTGATGAAACAGAGG+GGG | - | chr4_3:41974521-41974540 | None:intergenic | 40.0% | |
| CTCTTAGTGATGAAACAGAG+GGG | - | chr4_3:41974522-41974541 | None:intergenic | 40.0% | |
| GCTCTTAGTGATGAAACAGA+GGG | - | chr4_3:41974523-41974542 | None:intergenic | 40.0% | |
| AGCTCTTAGTGATGAAACAG+AGG | - | chr4_3:41974524-41974543 | None:intergenic | 40.0% | |
| AAGCAGAAGGAACTACTCAT+CGG | - | chr4_3:41974817-41974836 | None:intergenic | 40.0% | |
| ! | CTTATTCCAGTAAGTTGGGT+CGG | + | chr4_3:41974967-41974986 | Msa0641440:intron | 40.0% |
| AGCATGATCACCTGAGAATA+TGG | + | chr4_3:41975084-41975103 | Msa0641440:intron | 40.0% | |
| GCATGATCACCTGAGAATAT+GGG | + | chr4_3:41975085-41975104 | Msa0641440:intron | 40.0% | |
| CATGATCACCTGAGAATATG+GGG | + | chr4_3:41975086-41975105 | Msa0641440:intron | 40.0% | |
| TACAGATACAGACACGAACA+CGG | + | chr4_3:41975345-41975364 | Msa0641440:intron | 40.0% | |
| ! | CAGGCTTCTGTTATTTGATC+GGG | + | chr4_3:41975557-41975576 | Msa0641440:intron | 40.0% |
| TCCCATAGCCAATTTGTGAA+GGG | + | chr4_3:41975821-41975840 | Msa0641440:intron | 40.0% | |
| TCCCTTCACAAATTGGCTAT+GGG | - | chr4_3:41975825-41975844 | None:intergenic | 40.0% | |
| ATCCCTTCACAAATTGGCTA+TGG | - | chr4_3:41975826-41975845 | None:intergenic | 40.0% | |
| GCAATAGCGTGTTTGTATAG+CGG | + | chr4_3:41975871-41975890 | Msa0641440:intron | 40.0% | |
| ! | TTAGAAGGCAGTGTTGTTGA+TGG | - | chr4_3:41975912-41975931 | None:intergenic | 40.0% |
| ! | CGCTTAACGGCTTAATCTTT+TGG | + | chr4_3:41976017-41976036 | Msa0641440:intron | 40.0% |
| !! | GCTTAATCTTTTGGGAGAAC+TGG | + | chr4_3:41976026-41976045 | Msa0641440:intron | 40.0% |
| TCTCTTTGACCGAGTAATCA+AGG | + | chr4_3:41976068-41976087 | Msa0641440:intron | 40.0% | |
| !! | ATGCAAAAGCCTTGCTTTTG+GGG | - | chr4_3:41976127-41976146 | None:intergenic | 40.0% |
| !! | CATGCAAAAGCCTTGCTTTT+GGG | - | chr4_3:41976128-41976147 | None:intergenic | 40.0% |
| ! | TCATGCAAAAGCCTTGCTTT+TGG | - | chr4_3:41976129-41976148 | None:intergenic | 40.0% |
| ! | AAAAGCAAGGCTTTTGCATG+AGG | + | chr4_3:41976128-41976147 | Msa0641440:intron | 40.0% |
| ! | AGCTTTAACCATTAGACCAG+AGG | - | chr4_3:41976306-41976325 | None:intergenic | 40.0% |
| !! | TGCCTACAAATTTGTTGGGA+CGG | + | chr4_3:41976464-41976483 | Msa0641440:intron | 40.0% |
| ! | TGTTTCTGCTGAGAGCTAAT+TGG | + | chr4_3:41976661-41976680 | Msa0641440:intron | 40.0% |
| !! | AGTATTGAGCGTGTGAGTTT+TGG | + | chr4_3:41976907-41976926 | Msa0641440:intron | 40.0% |
| CAAAGAATTCGCAACTGGAT+CGG | - | chr4_3:41976950-41976969 | None:intergenic | 40.0% | |
| ATCGTAGAGACTAACAGTGA+TGG | + | chr4_3:41977025-41977044 | Msa0641440:CDS | 40.0% | |
| ! | AACTTTCAAGTACCCAAGAG+TGG | + | chr4_3:41977059-41977078 | Msa0641440:CDS | 40.0% |
| AGTACCCAAGAGTGGTTATT+AGG | + | chr4_3:41977067-41977086 | Msa0641440:CDS | 40.0% | |
| ACAATTCTGCACCAGTAAAC+AGG | + | chr4_3:41977092-41977111 | Msa0641440:CDS | 40.0% | |
| AAACAGGAAGATGACTGCAA+AGG | + | chr4_3:41977108-41977127 | Msa0641440:CDS | 40.0% | |
| AGAACATACTGAGTCAAGAG+AGG | - | chr4_3:41977399-41977418 | None:intergenic | 40.0% | |
| TGACGAGACTGGAAAAACAA+AGG | - | chr4_3:41977639-41977658 | None:intergenic | 40.0% | |
| ! | TAATAGTGAGTTGACGAGAC+TGG | - | chr4_3:41977650-41977669 | None:intergenic | 40.0% |
| !! | ATTTTAATGCCCGCCTTTTC+AGG | + | chr4_3:41977888-41977907 | Msa0641440:intron | 40.0% |
| GCTGCTATAAGTTATGCGAT+TGG | + | chr4_3:41977910-41977929 | Msa0641440:CDS | 40.0% | |
| GAAATGACAATTGCTCTCTG+TGG | + | chr4_3:41978194-41978213 | Msa0641440:intron | 40.0% | |
| TATTTGAGGAACGGTTTCAC+TGG | - | chr4_3:41978344-41978363 | None:intergenic | 40.0% | |
| TAACAACAGAGAACGCTAAC+TGG | - | chr4_3:41978431-41978450 | None:intergenic | 40.0% | |
| GTATAGCACTTTCATCTCCA+AGG | + | chr4_3:41978556-41978575 | Msa0641440:CDS | 40.0% | |
| AAAGTCCATAAATTGCAGCC+GGG | - | chr4_3:41978590-41978609 | None:intergenic | 40.0% | |
| CAAAGTCCATAAATTGCAGC+CGG | - | chr4_3:41978591-41978610 | None:intergenic | 40.0% | |
| GGCTGCAATTTATGGACTTT+GGG | + | chr4_3:41978590-41978609 | Msa0641440:CDS | 40.0% | |
| CTAAATCCCTCAAGAAAGTG+AGG | - | chr4_3:41978696-41978715 | None:intergenic | 40.0% | |
| ATCTGTCCATTAATGCAGTC+AGG | + | chr4_3:41978733-41978752 | Msa0641440:intron | 40.0% | |
| GTAGACAAACATCCCAAACA+TGG | - | chr4_3:41979022-41979041 | None:intergenic | 40.0% | |
| CTCAGCCTTCAAAATTCTTC+TGG | - | chr4_3:41979102-41979121 | None:intergenic | 40.0% | |
| !! | CAGAAGAATTTTGAAGGCTG+AGG | + | chr4_3:41979100-41979119 | Msa0641440:exon | 40.0% |
| !! | AAGAATTTTGAAGGCTGAGG+TGG | + | chr4_3:41979103-41979122 | Msa0641440:exon | 40.0% |
| ATAGTGTGATCTGCTGAACA+TGG | - | chr4_3:41979146-41979165 | None:intergenic | 40.0% | |
| TTCCCTACATCCTCAAATGT+TGG | + | chr4_3:41979168-41979187 | Msa0641440:three_prime_UTR | 40.0% | |
| CTGGTCATTTCCAACATTTG+AGG | - | chr4_3:41979181-41979200 | None:intergenic | 40.0% | |
| ATTTAGCCGACCCAACTTAC+TGG | - | chr4_3:41974976-41974995 | None:intergenic | 45.0% | |
| CATCACATCCCCATATTCTC+AGG | - | chr4_3:41975097-41975116 | None:intergenic | 45.0% | |
| ! | ACCTTGTTGGCTATGAAGCA+CGG | + | chr4_3:41975321-41975340 | Msa0641440:intron | 45.0% |
| TCTACCACATCATTCCACCT+TGG | - | chr4_3:41975788-41975807 | None:intergenic | 45.0% | |
| CTCCCATAGCCAATTTGTGA+AGG | + | chr4_3:41975820-41975839 | Msa0641440:intron | 45.0% | |
| GCAGGAATCCCTTCACAAAT+TGG | - | chr4_3:41975832-41975851 | None:intergenic | 45.0% | |
| AAACACGCTATTGCAGCCTA+TGG | - | chr4_3:41975865-41975884 | None:intergenic | 45.0% | |
| GCTCAGCTACCTTGATTACT+CGG | - | chr4_3:41976080-41976099 | None:intergenic | 45.0% | |
| !! | TGCAAAAGCCTTGCTTTTGG+GGG | - | chr4_3:41976126-41976145 | None:intergenic | 45.0% |
| CACTAGCTCAAAGGTTGGAT+CGG | - | chr4_3:41976200-41976219 | None:intergenic | 45.0% | |
| TGCTTCACTAGCTCAAAGGT+TGG | - | chr4_3:41976205-41976224 | None:intergenic | 45.0% | |
| ACCTTTGAGCTAGTGAAGCA+AGG | + | chr4_3:41976205-41976224 | Msa0641440:intron | 45.0% | |
| CCTTTGAGCTAGTGAAGCAA+GGG | + | chr4_3:41976206-41976225 | Msa0641440:intron | 45.0% | |
| ! | GCTAGTGAAGCAAGGGTTTT+AGG | + | chr4_3:41976213-41976232 | Msa0641440:intron | 45.0% |
| AAAAAGGGCCTCTGGTCTAA+TGG | + | chr4_3:41976295-41976314 | Msa0641440:intron | 45.0% | |
| CACCGTCCCAACAAATTTGT+AGG | - | chr4_3:41976469-41976488 | None:intergenic | 45.0% | |
| CCAGACAAAGAATTCGCAAC+TGG | - | chr4_3:41976955-41976974 | None:intergenic | 45.0% | |
| CCAGTTGCGAATTCTTTGTC+TGG | + | chr4_3:41976952-41976971 | Msa0641440:intron | 45.0% | |
| GTAGAGACTAACAGTGATGG+CGG | + | chr4_3:41977028-41977047 | Msa0641440:CDS | 45.0% | |
| GTCGCCTAATAACCACTCTT+GGG | - | chr4_3:41977074-41977093 | None:intergenic | 45.0% | |
| TGTCGCCTAATAACCACTCT+TGG | - | chr4_3:41977075-41977094 | None:intergenic | 45.0% | |
| GCAGTCATCTTCCTGTTTAC+TGG | - | chr4_3:41977106-41977125 | None:intergenic | 45.0% | |
| GGAAGATGACTGCAAAGGTA+TGG | + | chr4_3:41977113-41977132 | Msa0641440:intron | 45.0% | |
| AGTCGGTAACACTTACCTCA+AGG | + | chr4_3:41977430-41977449 | Msa0641440:intron | 45.0% | |
| CTACTTCTCTCTGTGGGTAT+TGG | + | chr4_3:41977550-41977569 | Msa0641440:intron | 45.0% | |
| !! | TCTCTCTGTGGGTATTGGAT+TGG | + | chr4_3:41977555-41977574 | Msa0641440:intron | 45.0% |
| !! | CTCTCTGTGGGTATTGGATT+GGG | + | chr4_3:41977556-41977575 | Msa0641440:intron | 45.0% |
| ! | GGTATTGGATTGGGTTGTAG+CGG | + | chr4_3:41977565-41977584 | Msa0641440:intron | 45.0% |
| ACGCACTTAGACAACATGAG+TGG | - | chr4_3:41977848-41977867 | None:intergenic | 45.0% | |
| TTATAGCAGCCTGAAAAGGC+GGG | - | chr4_3:41977900-41977919 | None:intergenic | 45.0% | |
| CTTATAGCAGCCTGAAAAGG+CGG | - | chr4_3:41977901-41977920 | None:intergenic | 45.0% | |
| AAGTTAAATAGGGGGAGCCT+TGG | + | chr4_3:41978142-41978161 | Msa0641440:intron | 45.0% | |
| CATGTTGATACAGGAGCTGA+AGG | - | chr4_3:41978309-41978328 | None:intergenic | 45.0% | |
| TGGTGTCTGCATGTTGATAC+AGG | - | chr4_3:41978318-41978337 | None:intergenic | 45.0% | |
| AGGAACGGTTTCACTGGATA+TGG | - | chr4_3:41978338-41978357 | None:intergenic | 45.0% | |
| GAGAAAACAATCAGGGGTAG+CGG | + | chr4_3:41978534-41978553 | Msa0641440:CDS | 45.0% | |
| CGGCTGCAATTTATGGACTT+TGG | + | chr4_3:41978589-41978608 | Msa0641440:CDS | 45.0% | |
| CAAGGTCCTGACTGCATTAA+TGG | - | chr4_3:41978742-41978761 | None:intergenic | 45.0% | |
| CATTAATGCAGTCAGGACCT+TGG | + | chr4_3:41978740-41978759 | Msa0641440:intron | 45.0% | |
| ACTTGATCCAACAGCTACCA+AGG | - | chr4_3:41978760-41978779 | None:intergenic | 45.0% | |
| GTCAGAACATTGTTGGTCGT+TGG | - | chr4_3:41978870-41978889 | None:intergenic | 45.0% | |
| GCGCTTTCAAGAAAGGGATT+TGG | - | chr4_3:41978927-41978946 | None:intergenic | 45.0% | |
| ACAAACATCCCAAACATGGC+TGG | - | chr4_3:41979018-41979037 | None:intergenic | 45.0% | |
| !!! | TTTTTATAATATTTTGTTTT+TGG | + | chr4_3:41975034-41975053 | Msa0641440:intron | 5.0% |
| !! | TATACTTAAAAAATTAATAA+GGG | - | chr4_3:41975188-41975207 | None:intergenic | 5.0% |
| !! | ATATACTTAAAAAATTAATA+AGG | - | chr4_3:41975189-41975208 | None:intergenic | 5.0% |
| !! | TTAAACTAAAAATAAAATAT+TGG | - | chr4_3:41976243-41976262 | None:intergenic | 5.0% |
| TCCGTGCTTCATAGCCAACA+AGG | - | chr4_3:41975325-41975344 | None:intergenic | 50.0% | |
| ! | TCCTCAGACTAGTTGTGTCC+CGG | - | chr4_3:41975470-41975489 | None:intergenic | 50.0% |
| TTGTGAAGGGATTCCTGCCA+TGG | + | chr4_3:41975834-41975853 | Msa0641440:intron | 50.0% | |
| ! | GAAGGCAGTGTTGTTGATGG+CGG | - | chr4_3:41975909-41975928 | None:intergenic | 50.0% |
| ! | AGCAAGGCTTTTGCATGAGG+TGG | + | chr4_3:41976131-41976150 | Msa0641440:intron | 50.0% |
| TTAGCACCCGATAGCATTGC+AGG | + | chr4_3:41976173-41976192 | Msa0641440:intron | 50.0% | |
| TAGCACCCGATAGCATTGCA+GGG | + | chr4_3:41976174-41976193 | Msa0641440:intron | 50.0% | |
| CCCTTGCTTCACTAGCTCAA+AGG | - | chr4_3:41976209-41976228 | None:intergenic | 50.0% | |
| GTGCTAGCAACACACTCTGT+AGG | + | chr4_3:41976345-41976364 | Msa0641440:intron | 50.0% | |
| !! | CAAATTTGTTGGGACGGTGC+TGG | + | chr4_3:41976470-41976489 | Msa0641440:intron | 50.0% |
| TTCGCAACTGGATCGGTACA+AGG | - | chr4_3:41976943-41976962 | None:intergenic | 50.0% | |
| ! | ATGCGATTGGGGTCCTTTTC+AGG | + | chr4_3:41977923-41977942 | Msa0641440:CDS | 50.0% |
| ACAACTTTACCGTTGCGCCA+AGG | - | chr4_3:41978162-41978181 | None:intergenic | 50.0% | |
| ATCTCCAAGGCTTGTGATCC+CGG | + | chr4_3:41978569-41978588 | Msa0641440:CDS | 50.0% | |
| GTGATCCCGGCTGCAATTTA+TGG | + | chr4_3:41978582-41978601 | Msa0641440:CDS | 50.0% | |
| AGCTTGTGCCAGCCATGTTT+GGG | + | chr4_3:41979007-41979026 | Msa0641440:intron | 50.0% | |
| TGGAAATGACCAGCTGCATC+CGG | + | chr4_3:41979188-41979207 | Msa0641440:three_prime_UTR | 50.0% | |
| TGTCGTGTCTGTGTCGTGTC+TGG | - | chr4_3:41975374-41975393 | None:intergenic | 55.0% | |
| ! | ACCGGGACACAACTAGTCTG+AGG | + | chr4_3:41975466-41975485 | Msa0641440:intron | 55.0% |
| GCTGCCAAGGTGGAATGATG+TGG | + | chr4_3:41975781-41975800 | Msa0641440:intron | 55.0% | |
| TGAAGGGATTCCTGCCATGG+CGG | + | chr4_3:41975837-41975856 | Msa0641440:intron | 55.0% | |
| !! | GCAGTGTTGTTGATGGCGGA+AGG | - | chr4_3:41975905-41975924 | None:intergenic | 55.0% |
| GAGACGCTGATACCACATCG+CGG | - | chr4_3:41976052-41976071 | None:intergenic | 55.0% | |
| ACCTCAAGCCCCCAAAAGCA+AGG | + | chr4_3:41976115-41976134 | Msa0641440:intron | 55.0% | |
| ATCGGCCCTGCAATGCTATC+GGG | - | chr4_3:41976182-41976201 | None:intergenic | 55.0% | |
| GATCGGCCCTGCAATGCTAT+CGG | - | chr4_3:41976183-41976202 | None:intergenic | 55.0% | |
| ! | GTCAGGACCTTGGTAGCTGT+TGG | + | chr4_3:41978750-41978769 | Msa0641440:intron | 55.0% |
| ACATGGCTGGCACAAGCTGA+GGG | - | chr4_3:41979005-41979024 | None:intergenic | 55.0% | |
| AACATGGCTGGCACAAGCTG+AGG | - | chr4_3:41979006-41979025 | None:intergenic | 55.0% | |
| CAGCTTGTGCCAGCCATGTT+TGG | + | chr4_3:41979006-41979025 | Msa0641440:intron | 55.0% | |
| TGCTTAGTTCCGGATGCAGC+TGG | - | chr4_3:41979200-41979219 | None:intergenic | 55.0% | |
| GCTGCTGCTGCTGCTACTAC+AGG | + | chr4_3:41974589-41974608 | Msa0641440:CDS | 60.0% | |
| GTCGGACACGTGTCTGACAC+CGG | + | chr4_3:41975448-41975467 | Msa0641440:intron | 60.0% | |
| TCGGACACGTGTCTGACACC+GGG | + | chr4_3:41975449-41975468 | Msa0641440:intron | 60.0% | |
| !! | GCTTTTGGGGGCTTGAGGTG+AGG | - | chr4_3:41976114-41976133 | None:intergenic | 60.0% |
| !! | GCCTTGCTTTTGGGGGCTTG+AGG | - | chr4_3:41976119-41976138 | None:intergenic | 60.0% |
| TGGCAGTCATGGCGCTGCCA+AGG | + | chr4_3:41975768-41975787 | Msa0641440:intron | 65.0% | |
| CAGTCATGGCGCTGCCAAGG+TGG | + | chr4_3:41975771-41975790 | Msa0641440:intron | 65.0% | |
| !! | TCCTGCCATGGCGGTGCCAT+AGG | + | chr4_3:41975846-41975865 | Msa0641440:intron | 65.0% |
| TGCAGCCTATGGCACCGCCA+TGG | - | chr4_3:41975854-41975873 | None:intergenic | 65.0% | |
| TGGGAGAACTGGCCGCGATG+TGG | + | chr4_3:41976037-41976056 | Msa0641440:intron | 65.0% | |
| TAGGGGGAGCCTTGGCGCAA+CGG | + | chr4_3:41978150-41978169 | Msa0641440:intron | 65.0% | |
| GCAGCCGGGATCACAAGCCT+TGG | - | chr4_3:41978576-41978595 | None:intergenic | 65.0% | |
| GCCTATGGCACCGCCATGGC+AGG | - | chr4_3:41975850-41975869 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 41974424 | 41979379 | 41974424 | ID=Msa0641440;Name=Msa0641440 |
| chr4_3 | mRNA | 41974424 | 41979379 | 41974424 | ID=Msa0641440-mRNA-1;Parent=Msa0641440;Name=Msa0641440-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0|0.71|0.75|1|0.85|0.75|8|212|269 |
| chr4_3 | exon | 41974424 | 41974610 | 41974424 | ID=Msa0641440-mRNA-1:exon:9416;Parent=Msa0641440-mRNA-1 |
| chr4_3 | exon | 41976703 | 41976872 | 41976703 | ID=Msa0641440-mRNA-1:exon:9417;Parent=Msa0641440-mRNA-1 |
| chr4_3 | exon | 41977025 | 41977129 | 41977025 | ID=Msa0641440-mRNA-1:exon:9418;Parent=Msa0641440-mRNA-1 |
| chr4_3 | exon | 41977910 | 41977944 | 41977910 | ID=Msa0641440-mRNA-1:exon:9419;Parent=Msa0641440-mRNA-1 |
| chr4_3 | exon | 41978297 | 41978386 | 41978297 | ID=Msa0641440-mRNA-1:exon:9420;Parent=Msa0641440-mRNA-1 |
| chr4_3 | exon | 41978497 | 41978614 | 41978497 | ID=Msa0641440-mRNA-1:exon:9421;Parent=Msa0641440-mRNA-1 |
| chr4_3 | exon | 41979009 | 41979249 | 41979009 | ID=Msa0641440-mRNA-1:exon:9422;Parent=Msa0641440-mRNA-1 |
| chr4_3 | exon | 41979304 | 41979379 | 41979304 | ID=Msa0641440-mRNA-1:exon:9423;Parent=Msa0641440-mRNA-1 |
| chr4_3 | CDS | 41974424 | 41974610 | 41974424 | ID=Msa0641440-mRNA-1:cds;Parent=Msa0641440-mRNA-1 |
| chr4_3 | CDS | 41976703 | 41976872 | 41976703 | ID=Msa0641440-mRNA-1:cds;Parent=Msa0641440-mRNA-1 |
| chr4_3 | CDS | 41977025 | 41977129 | 41977025 | ID=Msa0641440-mRNA-1:cds;Parent=Msa0641440-mRNA-1 |
| chr4_3 | CDS | 41977910 | 41977944 | 41977910 | ID=Msa0641440-mRNA-1:cds;Parent=Msa0641440-mRNA-1 |
| chr4_3 | CDS | 41978297 | 41978386 | 41978297 | ID=Msa0641440-mRNA-1:cds;Parent=Msa0641440-mRNA-1 |
| chr4_3 | CDS | 41978497 | 41978614 | 41978497 | ID=Msa0641440-mRNA-1:cds;Parent=Msa0641440-mRNA-1 |
| chr4_3 | CDS | 41979009 | 41979113 | 41979009 | ID=Msa0641440-mRNA-1:cds;Parent=Msa0641440-mRNA-1 |
| chr4_3 | three_prime_UTR | 41979114 | 41979249 | 41979114 | ID=Msa0641440-mRNA-1:three_prime_utr;Parent=Msa0641440-mRNA-1 |
| chr4_3 | three_prime_UTR | 41979304 | 41979379 | 41979304 | ID=Msa0641440-mRNA-1:three_prime_utr;Parent=Msa0641440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
