AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0682690

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0682690 MtrunA17_Chr4g0028991 94.563 846 7 4 1 807 1 846 0.0 1635
Msa0682690 MtrunA17_Chr2g0326731 75.561 847 157 10 3 807 1 839 0.0 1318
Msa0682690 MtrunA17_Chr2g0292391 66.468 841 222 11 19 807 4 836 0.0 1122
Msa0682690 MtrunA17_Chr2g0331131 63.202 837 245 13 24 807 10 836 0.0 1048
Msa0682690 MtrunA17_Chr8g0340411 62.411 838 252 15 21 807 7 832 0.0 1039
Msa0682690 MtrunA17_Chr3g0140351 62.757 827 258 12 24 807 16 835 0.0 1036
Msa0682690 MtrunA17_Chr2g0322731 24.029 412 234 15 192 575 345 705 1.14e-14 78.2
Msa0682690 MtrunA17_Chr2g0322731 33.333 105 63 2 8 109 83 183 2.97e-12 70.5
Msa0682690 MtrunA17_Chr4g0024351 22.628 411 239 14 192 574 304 663 1.55e-11 68.2
Msa0682690 MtrunA17_Chr4g0024351 35.354 99 57 2 9 104 44 138 3.47e-11 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0682690 AT5G60690.1 78.276 847 137 10 3 807 1 842 0.0 1345
Msa0682690 AT2G34710.1 65.839 846 223 14 19 807 16 852 0.0 1093
Msa0682690 AT1G30490.1 63.753 858 236 13 7 807 2 841 0.0 1078
Msa0682690 AT1G52150.2 64.362 839 230 14 24 807 13 837 0.0 1052
Msa0682690 AT1G52150.1 64.362 839 229 14 24 807 13 836 0.0 1051
Msa0682690 AT4G32880.1 61.995 842 258 17 17 807 3 833 0.0 1022
Msa0682690 AT1G52150.3 64.304 790 213 14 24 758 13 788 0.0 982
Msa0682690 AT5G32670.1 67.143 70 23 0 272 341 37 106 3.44e-26 107
Msa0682690 AT1G79840.1 23.280 683 363 28 28 627 104 708 2.97e-24 109
Msa0682690 AT1G79840.3 23.280 683 363 28 28 627 46 650 3.05e-24 109
Msa0682690 AT1G79840.6 23.280 683 363 28 28 627 46 650 3.05e-24 109
Msa0682690 AT1G79840.2 23.280 683 363 28 28 627 133 737 4.30e-24 108
Msa0682690 AT1G79840.4 24.335 526 306 21 28 479 104 611 7.12e-23 104
Msa0682690 AT5G52170.3 23.861 373 222 10 29 351 61 421 6.42e-15 79.3
Msa0682690 AT5G52170.1 23.861 373 222 10 29 351 61 421 6.42e-15 79.3
Msa0682690 AT5G52170.2 23.861 373 222 10 29 351 61 421 6.51e-15 79.3
Msa0682690 AT4G21750.2 23.829 491 273 22 175 632 306 728 2.80e-13 74.3
Msa0682690 AT4G21750.1 23.829 491 273 22 175 632 306 728 2.80e-13 74.3
Msa0682690 AT4G21750.3 23.829 491 273 22 175 632 306 728 2.80e-13 74.3
Msa0682690 AT4G21750.4 23.829 491 273 22 175 632 306 728 2.80e-13 74.3

Find 242 sgRNAs with CRISPR-Local

Find 403 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGCTCCTGCCCGGGATTTC+TGG 0.127870 4_4:-44635134 Msa0682690:CDS
GATAGAATATGACAAGTTTA+AGG 0.143295 4_4:+44637231 None:intergenic
TAGCTTTCTCTTTCATAAAT+TGG 0.177453 4_4:-44632107 Msa0682690:CDS
CATCACCAACATGCTTATTA+AGG 0.209228 4_4:-44637675 Msa0682690:five_prime_UTR
CTCAATGGTTCCTCCATTTC+CGG 0.218751 4_4:+44635266 None:intergenic
AGAAGAGCTACTTAGATTCT+TGG 0.227127 4_4:+44634255 None:intergenic
TGAGCAGCAGCAGTTGAATT+AGG 0.229833 4_4:+44634946 None:intergenic
GAATTAATCTTGTAAATTAT+TGG 0.241549 4_4:-44631950 Msa0682690:three_prime_UTR
ACCAAGATAAACGATCTTTA+AGG 0.256930 4_4:+44635331 None:intergenic
AGTTTAAGGGAAAATGAAAA+TGG 0.259645 4_4:+44637245 None:intergenic
GAACGTTCCTCCAGCGGTTT+TGG 0.267801 4_4:-44634085 Msa0682690:CDS
TAGGGATATTCACCTGTTAC+AGG 0.269982 4_4:-44633670 Msa0682690:intron
TCAAGACAAATGAAAGTTCT+TGG 0.276936 4_4:+44637164 None:intergenic
GAAACATTGTGAAAACTTCT+AGG 0.277838 4_4:+44635292 None:intergenic
GATGCTCCATTGGTGCCTTC+TGG 0.293806 4_4:-44633349 Msa0682690:CDS
TGAGCTAGTGTAACTGCTTC+TGG 0.294323 4_4:+44632846 None:intergenic
AGAAAATGAACAAGAAAGTT+TGG 0.295020 4_4:+44637283 None:intergenic
GGCTTCAATGACGCTGTAAA+TGG 0.300316 4_4:-44634349 Msa0682690:CDS
CTGAGATCAGATTCTCTTGT+TGG 0.314455 4_4:-44632685 Msa0682690:intron
GTGGCTACCTGCTCAATCTT+TGG 0.322456 4_4:+44634496 None:intergenic
GAAAGGTCCCTGTCTGGTTC+TGG 0.324143 4_4:-44634976 Msa0682690:CDS
TGATTGCCAGTGAATCTTGT+AGG 0.327004 4_4:+44633958 None:intergenic
ATAGAATATGACAAGTTTAA+GGG 0.328788 4_4:+44637232 None:intergenic
TGCAGATGCTTGAAGTTATT+AGG 0.332303 4_4:-44633734 Msa0682690:intron
TGGCCAGCCTGGTCCGGATT+CGG 0.332357 4_4:-44635565 Msa0682690:intron
GATAGGCACTTCGATATATT+AGG 0.337752 4_4:-44634593 Msa0682690:intron
CAGTATCAATCAAGAGAAAA+AGG 0.339257 4_4:+44637647 None:intergenic
TAAAGTGGTCGTAGTACTTC+TGG 0.341715 4_4:+44634735 None:intergenic
TCAACACTGATCGGGTGTTT+TGG 0.344060 4_4:+44633033 None:intergenic
TCCCTGTCTGGTTCTGGCAC+TGG 0.345502 4_4:-44634970 Msa0682690:CDS
TCTGGGAACATTTCATCAAT+TGG 0.355893 4_4:+44633373 None:intergenic
CTTGAAGTTATTAGGCTTGA+AGG 0.356810 4_4:-44633726 Msa0682690:CDS
GGGTTTGCTTATCTGCCAGC+TGG 0.357471 4_4:-44632222 Msa0682690:CDS
CAAGATAAGTTTGAATGAAA+TGG 0.365439 4_4:+44637489 None:intergenic
GGCACCAATGGAGCATCATC+TGG 0.365656 4_4:+44633355 None:intergenic
TCTTAGATACACTACAACTT+TGG 0.376901 4_4:-44635109 Msa0682690:CDS
TGGAGAACCAGGAGAAAGTT+TGG 0.380345 4_4:+44632866 None:intergenic
ATTGATAAGCATCTAGATTC+AGG 0.380570 4_4:-44637058 Msa0682690:CDS
ACAATGTTTCCTGCCGGAAA+TGG 0.381342 4_4:-44635279 Msa0682690:CDS
AGTATGGAATTTACCTTTGT+AGG 0.381444 4_4:+44635471 None:intergenic
TTCTCTTGGCCAGCCTGGTC+CGG 0.383123 4_4:-44635571 Msa0682690:intron
GGTGAAGTGGTATACGGATT+AGG 0.388453 4_4:-44634549 Msa0682690:CDS
AGTAAGGCATTACCTGTAAC+AGG 0.394026 4_4:+44633658 None:intergenic
ATCAAATAATCATGCCTCTT+GGG 0.394989 4_4:-44633939 Msa0682690:CDS
AACCAAACCTTGATCTGTTT+AGG 0.396617 4_4:+44636908 None:intergenic
TCCTTAAAGATCGTTTATCT+TGG 0.397827 4_4:-44635332 Msa0682690:CDS
CAAGGCTTCAAACTGTGAAT+AGG 0.399527 4_4:-44636745 Msa0682690:CDS
GAAAGTTTGGCACCAACAGC+TGG 0.405904 4_4:+44632879 None:intergenic
TCGAGTGGTGAAGTGGTATA+CGG 0.413960 4_4:-44634555 Msa0682690:CDS
TAGATTCAGGGAAATATGTT+AGG 0.416438 4_4:-44637045 Msa0682690:CDS
CTACAGGAACTGCTGTTGAT+TGG 0.418349 4_4:-44636000 Msa0682690:CDS
TACAGGAACTGCTGTTGATT+GGG 0.419994 4_4:-44635999 Msa0682690:intron
GCAAAGATCCCAACCGAATC+CGG 0.421507 4_4:+44635552 None:intergenic
GAGCAGCAGCAGTTGAATTA+GGG 0.422108 4_4:+44634947 None:intergenic
GTTGGTGCCAAACTTTCTCC+TGG 0.425700 4_4:-44632873 Msa0682690:CDS
TGTTGTCTTCTCATGGAACT+AGG 0.427476 4_4:+44636968 None:intergenic
GGGATCTGCATGTCGACAAT+GGG 0.430271 4_4:-44632201 Msa0682690:CDS
CAGTGTCCGGTTTGTATTCA+CGG 0.430832 4_4:+44633121 None:intergenic
AACCTAAACAGATCAAGGTT+TGG 0.433904 4_4:-44636910 Msa0682690:CDS
AATCAAATAATCATGCCTCT+TGG 0.435473 4_4:-44633940 Msa0682690:CDS
AACCACCTGTTGCATTAACT+TGG 0.435864 4_4:+44632335 None:intergenic
CAATGAACAGTGTTATCTTC+TGG 0.436228 4_4:+44632132 None:intergenic
CACTGCCGTGAGTTGTCGTT+GGG 0.437038 4_4:+44633072 None:intergenic
GCAGGAACCTATGCCTATCC+AGG 0.445397 4_4:-44633988 Msa0682690:CDS
GCAAGTTCCCTCACATTGCT+TGG 0.446182 4_4:-44634226 Msa0682690:CDS
TTGAGGTTTGTGTGTTGTGT+GGG 0.446427 4_4:-44637145 Msa0682690:five_prime_UTR
GATAAAATATTTGACGAGTC+TGG 0.446806 4_4:-44632384 Msa0682690:CDS
AGTGAAGTTGTCTTTGTCCT+AGG 0.447473 4_4:+44637567 None:intergenic
GCAAGATAATGTTGTAATCA+TGG 0.449611 4_4:-44632976 Msa0682690:CDS
AGCAAAGAAAAGAGGCTTCA+AGG 0.453264 4_4:-44636763 Msa0682690:CDS
GTTTAAGGGAAAATGAAAAT+GGG 0.454899 4_4:+44637246 None:intergenic
AATCAATTGTTGTCTTCTCA+TGG 0.455291 4_4:+44636961 None:intergenic
CTCTGTGCAGAGGGTTGCCA+TGG 0.455799 4_4:-44632925 Msa0682690:intron
GTTTATACCGGACGGAGAAA+TGG 0.458027 4_4:+44632902 None:intergenic
GCCATGGCCATTTCTCCGTC+CGG 0.458111 4_4:-44632909 Msa0682690:CDS
AGCAATGTGAGGGAACTTGC+TGG 0.458432 4_4:+44634229 None:intergenic
CAACGACGCTAGCTCCTGCC+CGG 0.459822 4_4:-44635143 Msa0682690:CDS
GGTTCAATGTTGGAAAGAAT+AGG 0.460052 4_4:+44636929 None:intergenic
CAGCCTGGTCCGGATTCGGT+TGG 0.460852 4_4:-44635561 Msa0682690:CDS
GTTTGTGAAAGGTCCCTGTC+TGG 0.462237 4_4:-44634982 Msa0682690:CDS
AAGTCTCCTCCGCAATTGAT+AGG 0.463644 4_4:+44636044 None:intergenic
AGCCTGGTCCGGATTCGGTT+GGG 0.465213 4_4:-44635560 Msa0682690:CDS
CATTGAACCTAAACAGATCA+AGG 0.465302 4_4:-44636915 Msa0682690:CDS
TTTGGTATTGCAGTCGCAGC+CGG 0.467861 4_4:-44632481 Msa0682690:intron
TGTTAGCACTTTCCATGCAA+TGG 0.472949 4_4:+44632155 None:intergenic
TACTGATGCAAGTTGTGATT+CGG 0.473449 4_4:-44636212 Msa0682690:CDS
CTTCTCATGGAACTAGGCTT+AGG 0.473637 4_4:+44636974 None:intergenic
GTCTTACTTCAAGATTTAAG+TGG 0.475390 4_4:+44634842 None:intergenic
ACAAGACTATATTCCTTCCT+AGG 0.476603 4_4:-44637584 Msa0682690:five_prime_UTR
TATCTTGGTTTCGCGAGTGT+CGG 0.476648 4_4:-44635317 Msa0682690:CDS
CTTAATAAGCATGTTGGTGA+TGG 0.477301 4_4:+44637676 None:intergenic
AATCTAATTAAATGCAAACT+TGG 0.478916 4_4:+44632001 None:intergenic
GTAATCAATGATAAATTTGA+AGG 0.481205 4_4:-44632052 Msa0682690:three_prime_UTR
TGTTGATGGAGGAAAATGAT+AGG 0.483631 4_4:-44636700 Msa0682690:CDS
TACTGAACAAGTTGAAGCAT+TGG 0.483862 4_4:-44637017 Msa0682690:CDS
ATCTAAGAGTCCAGAAATCC+CGG 0.484814 4_4:+44635124 None:intergenic
TCTTGCATAGTGCTGTCAAA+AGG 0.484830 4_4:+44632993 None:intergenic
AAGGGAACACCGCTCAGAAT+GGG 0.485855 4_4:-44634052 Msa0682690:CDS
GCATCAGTATTTGCTGCTGA+TGG 0.488575 4_4:+44636226 None:intergenic
AAAGAAAGGAATGAAGAAGA+AGG 0.489195 4_4:+44637703 None:intergenic
GAAATGGAGCTTGAGTTAGA+AGG 0.492851 4_4:+44637505 None:intergenic
CGGGCAGGAGCTAGCGTCGT+TGG 0.492905 4_4:+44635144 None:intergenic
AGAGATGCTACTAACCCTGC+TGG 0.494241 4_4:-44636163 Msa0682690:CDS
ACCTTTGGTGATTCATAAAG+TGG 0.494265 4_4:+44634720 None:intergenic
GCACTGCCGTGAGTTGTCGT+TGG 0.495965 4_4:+44633071 None:intergenic
CATTACCTTGTGAACCAAGA+TGG 0.497411 4_4:+44637360 None:intergenic
TGCAATGAACAAGTTGTTGA+TGG 0.500516 4_4:-44636714 Msa0682690:CDS
AAGAACTTTCATTTGTCTTG+AGG 0.501018 4_4:-44637162 Msa0682690:five_prime_UTR
CTGAATGTTCGCAAAACAGC+AGG 0.501563 4_4:+44634519 None:intergenic
TTTGTATTTGCAAATCAAGC+TGG 0.503494 4_4:-44632456 Msa0682690:CDS
ATCCCAACCGAATCCGGACC+AGG 0.503586 4_4:+44635558 None:intergenic
CTTGAGGTTTGTGTGTTGTG+TGG 0.505704 4_4:-44637146 Msa0682690:five_prime_UTR
TCAAGCTGGCCTTGACATGT+TGG 0.506180 4_4:-44632442 Msa0682690:CDS
GAGTGAAGTTGAGACTTGTA+TGG 0.508388 4_4:-44631919 Msa0682690:three_prime_UTR
CTTGCATAGTGCTGTCAAAA+GGG 0.508484 4_4:+44632994 None:intergenic
GGCCAGTGCCAGAACCAGAC+AGG 0.510237 4_4:+44634968 None:intergenic
TAAGGGAACACCGCTCAGAA+TGG 0.510249 4_4:-44634053 Msa0682690:CDS
GGTTTGCTTATCTGCCAGCT+GGG 0.514174 4_4:-44632221 Msa0682690:CDS
ATATATTAGGCAAATAGCTC+AGG 0.515140 4_4:-44634580 Msa0682690:CDS
ACAAGTTGAAGCATTGGAAA+GGG 0.515957 4_4:-44637011 Msa0682690:CDS
AGGCAATAGTCAACACTGAT+CGG 0.516074 4_4:+44633024 None:intergenic
GAGTTCCTTTCAAAGGCTAC+AGG 0.517677 4_4:-44636016 Msa0682690:CDS
GGCAATAGTCAACACTGATC+GGG 0.517701 4_4:+44633025 None:intergenic
AAGCAGTTACACTAGCTCAA+TGG 0.520279 4_4:-44632842 Msa0682690:CDS
TTCTTCTTGCAGATATGTAG+TGG 0.520407 4_4:-44633442 Msa0682690:intron
TAGTATCTGTCTAGTTTGAA+AGG 0.520632 4_4:-44631872 Msa0682690:three_prime_UTR
ACCAACAGCTGGGTTTATAC+CGG 0.520732 4_4:+44632890 None:intergenic
GTCGACATGCAGATCCCAGC+TGG 0.520952 4_4:+44632207 None:intergenic
CGGACACTGGATTTGACGTC+AGG 0.521504 4_4:-44633107 Msa0682690:CDS
CTTGCAGAACGTTCCTCCAG+CGG 0.526281 4_4:-44634091 Msa0682690:intron
GATCTGTTTAGGTTCAATGT+TGG 0.526382 4_4:+44636919 None:intergenic
TTTACAAGATTAATTCAACT+TGG 0.526796 4_4:+44631957 None:intergenic
TGGGATCTGCATGTCGACAA+TGG 0.533448 4_4:-44632202 Msa0682690:CDS
CATGGCTATGGCTATGGCTG+TGG 0.534941 4_4:-44637116 Msa0682690:CDS
CATCTTGGTTCACAAGGTAA+TGG 0.535554 4_4:-44637359 Msa0682690:five_prime_UTR
CTGTGTGTAAATAAGCTCAA+TGG 0.538636 4_4:+44635251 None:intergenic
AAGAAACATGGCTATGGCTA+TGG 0.538767 4_4:-44637122 Msa0682690:exon
TGGAGCTTGAGTTAGAAGGA+AGG 0.539812 4_4:+44637509 None:intergenic
ATGAGGCCTACAAGATTCAC+TGG 0.543583 4_4:-44633964 Msa0682690:CDS
AATAAGCATGTTGGTGATGG+AGG 0.543677 4_4:+44637679 None:intergenic
TTTGACAGAGTTCCTTTCAA+AGG 0.544138 4_4:-44636023 Msa0682690:CDS
TTGATAAGCATCTAGATTCA+GGG 0.546019 4_4:-44637057 Msa0682690:CDS
CGGAAACCAGAAGGCACCAA+TGG 0.546575 4_4:+44633343 None:intergenic
GTAACTGCTTCTGGAGAACC+AGG 0.547189 4_4:+44632855 None:intergenic
AGAGAAACTAGTAGCAGTGG+TGG 0.549453 4_4:-44637085 Msa0682690:CDS
AATCTTGTAGGCCTCATCCC+TGG 0.549464 4_4:+44633970 None:intergenic
CTAAAGCAAATCATCTTGAA+AGG 0.550660 4_4:-44631836 Msa0682690:three_prime_UTR
CAGTTCCTGTAGCCTTTGAA+AGG 0.551448 4_4:+44636011 None:intergenic
AACAAGTTGAAGCATTGGAA+AGG 0.552407 4_4:-44637012 Msa0682690:CDS
AGGATGCCGTGAATACAAAC+CGG 0.553865 4_4:-44633127 Msa0682690:CDS
AAGTTGTCTTTGTCCTAGGA+AGG 0.553870 4_4:+44637571 None:intergenic
ATGGTTCCTCCATTTCCGGC+AGG 0.554780 4_4:+44635270 None:intergenic
CTGACGTCAAATCCAGTGTC+CGG 0.556266 4_4:+44633108 None:intergenic
TTGATTACTAGCATTCACAT+TGG 0.557586 4_4:+44632067 None:intergenic
AACAGCATAAAATCGCGTCC+TGG 0.557589 4_4:+44632632 None:intergenic
TTATGAATCACCAAAGGTGG+TGG 0.558033 4_4:-44634715 Msa0682690:CDS
GAAACAACTGTGGCATCACC+AGG 0.558649 4_4:-44632650 Msa0682690:CDS
GGACTGATGAGAACGCTGTT+GGG 0.559056 4_4:-44633420 Msa0682690:CDS
TCTTCTTGCAGATATGTAGT+GGG 0.559916 4_4:-44633441 Msa0682690:intron
AATGGAATCAATAAAAGAGA+AGG 0.560120 4_4:+44637424 None:intergenic
ATGGAATCAATAAAAGAGAA+GGG 0.560824 4_4:+44637425 None:intergenic
CGTACGAGCAAGCCATTGCA+TGG 0.562208 4_4:-44632167 Msa0682690:CDS
GCGATTTCACAAAGTTGTAG+TGG 0.563887 4_4:-44635531 Msa0682690:CDS
TGTAGGCCTCATCCCTGGAT+AGG 0.565752 4_4:+44633975 None:intergenic
GTTCCCAGATGATGCTCCAT+TGG 0.566789 4_4:-44633359 Msa0682690:CDS
TCCTGCTTTCAGTGATGCAG+CGG 0.568391 4_4:+44634005 None:intergenic
GGTCGAATCAAGTAGCCACT+CGG 0.568475 4_4:+44634901 None:intergenic
TAATAGTGAACTTACTGCAA+TGG 0.570234 4_4:+44634680 None:intergenic
ATTTGACGAGTCTGGTCGCA+AGG 0.571396 4_4:-44632376 Msa0682690:CDS
TCCGCTGCATCACTGAAAGC+AGG 0.573762 4_4:-44634006 Msa0682690:CDS
AAAGTTTGGCACCAACAGCT+GGG 0.574992 4_4:+44632880 None:intergenic
TTCACAAAGTTGTAGTGGAG+TGG 0.575629 4_4:-44635526 Msa0682690:CDS
TAATCAATGATAAATTTGAA+GGG 0.577601 4_4:-44632051 Msa0682690:three_prime_UTR
AGAAAGCGAACCAAAACCGC+TGG 0.578885 4_4:+44634075 None:intergenic
CCTCATCCCTGGATAGGCAT+AGG 0.580110 4_4:+44633981 None:intergenic
CATTCAGCCAAAGATTGAGC+AGG 0.580203 4_4:-44634503 Msa0682690:intron
ATGTTTCCTGCCGGAAATGG+AGG 0.580359 4_4:-44635276 Msa0682690:CDS
TCCGGTATAAACCCAGCTGT+TGG 0.580698 4_4:-44632891 Msa0682690:CDS
GCACCAATGGAGCATCATCT+GGG 0.585521 4_4:+44633356 None:intergenic
TAGAGAGAAGCAAAGAAAAG+AGG 0.587959 4_4:-44636771 Msa0682690:CDS
AGTTCCCTCACATTGCTTGG+AGG 0.589621 4_4:-44634223 Msa0682690:CDS
GTAAATGGATTCAGTGATGA+TGG 0.590567 4_4:-44634334 Msa0682690:CDS
GTGAACCCAACGACAACTCA+CGG 0.590708 4_4:-44633077 Msa0682690:CDS
CGTGAATACAAACCGGACAC+TGG 0.591523 4_4:-44633120 Msa0682690:CDS
ATTCGACCATGTGATGGTGG+AGG 0.591654 4_4:-44634886 Msa0682690:CDS
GAGTTGTTTCCAACATGTCA+AGG 0.591719 4_4:+44632433 None:intergenic
AACGACGCTAGCTCCTGCCC+GGG 0.593425 4_4:-44635142 Msa0682690:CDS
GGGACTGATGAGAACGCTGT+TGG 0.594775 4_4:-44633421 Msa0682690:CDS
GAACACAATTGAACATGAAG+AGG 0.595332 4_4:-44633917 Msa0682690:intron
TGTTAGTTTAGAACCTACAA+AGG 0.596128 4_4:-44635484 Msa0682690:intron
AGGTTTGGTTCCAAAATCGA+AGG 0.597184 4_4:-44636895 Msa0682690:intron
AGAGTCCAGAAATCCCGGGC+AGG 0.597452 4_4:+44635129 None:intergenic
TGTTCAATTGTGTTCCCAAG+AGG 0.599573 4_4:+44633925 None:intergenic
TTGCAGACTCCTATCAATTG+CGG 0.602778 4_4:-44636053 Msa0682690:intron
CATCTTCTTGAGCAAGAGAG+TGG 0.603372 4_4:+44633703 None:intergenic
GAGATGCTACTAACCCTGCT+GGG 0.605907 4_4:-44636162 Msa0682690:intron
CATAGAGAAACTAGTAGCAG+TGG 0.608882 4_4:-44637088 Msa0682690:CDS
GTCGAATCAAGTAGCCACTC+GGG 0.608954 4_4:+44634902 None:intergenic
TGATTTGCAAATACAAACAC+CGG 0.610151 4_4:+44632462 None:intergenic
AGTACTTCTGGCACACTCCA+CGG 0.612200 4_4:+44634747 None:intergenic
AATCAATGATAAATTTGAAG+GGG 0.613068 4_4:-44632050 Msa0682690:three_prime_UTR
GGGATGATGCGGAAACCAGA+AGG 0.615520 4_4:+44633334 None:intergenic
TCAGGAATCGAGTGGTGAAG+TGG 0.617819 4_4:-44634562 Msa0682690:CDS
GCCAGTGCCAGAACCAGACA+GGG 0.617845 4_4:+44634969 None:intergenic
TTGAATCTAATGGGATGATG+CGG 0.619863 4_4:+44633323 None:intergenic
GCATCTCTCTTAGAATTCTG+AGG 0.619916 4_4:+44636178 None:intergenic
CATTGAGCTTATTTACACAC+AGG 0.620551 4_4:-44635250 Msa0682690:intron
AGCTCAGATATCAAGAAACA+TGG 0.621080 4_4:+44637763 None:intergenic
GAATTCCTCCAAGCAATGTG+AGG 0.621910 4_4:+44634218 None:intergenic
CAGGAACCTATGCCTATCCA+GGG 0.626828 4_4:-44633987 Msa0682690:CDS
CCTATGCCTATCCAGGGATG+AGG 0.627418 4_4:-44633981 Msa0682690:CDS
ATGGATTCAGTGATGATGGT+TGG 0.628950 4_4:-44634330 Msa0682690:CDS
TACACTACAACTTTGGACAA+TGG 0.630488 4_4:-44635102 Msa0682690:CDS
CAGACTCCTATCAATTGCGG+AGG 0.631681 4_4:-44636050 Msa0682690:CDS
TACTTGATTCGACCATGTGA+TGG 0.633229 4_4:-44634892 Msa0682690:CDS
TGTGGGAAGAAACATGGCTA+TGG 0.633966 4_4:-44637128 Msa0682690:exon
TTGGTGATGGAGGAAAAGAA+AGG 0.634397 4_4:+44637689 None:intergenic
AATTCCTCCAAGCAATGTGA+GGG 0.636010 4_4:+44634219 None:intergenic
GGAGTGGCAGCTCGAGCTTG+CGG 0.638597 4_4:-44635510 Msa0682690:CDS
TTTGGACAATGGCAGTCTTG+TGG 0.639500 4_4:-44635091 Msa0682690:intron
TCTAAGAGTCCAGAAATCCC+GGG 0.642124 4_4:+44635125 None:intergenic
GATTTAAGTGGTCTACAATG+TGG 0.642422 4_4:+44634854 None:intergenic
ACCGGACGGAGAAATGGCCA+TGG 0.644894 4_4:+44632908 None:intergenic
AAGCGAACCAAAACCGCTGG+AGG 0.647188 4_4:+44634078 None:intergenic
ATTGAACCTCCACCATCACA+TGG 0.648754 4_4:+44634880 None:intergenic
TGGTCTATACTGAACTGTGA+CGG 0.652371 4_4:-44634310 Msa0682690:CDS
TTGATTCGACCATGTGATGG+TGG 0.653641 4_4:-44634889 Msa0682690:CDS
ACTTTATGAATCACCAAAGG+TGG 0.655976 4_4:-44634718 Msa0682690:CDS
AGCTTTACAAGACATCACAT+TGG 0.658238 4_4:-44632406 Msa0682690:CDS
TCTGCATGTCGACAATGGGG+CGG 0.660182 4_4:-44632197 Msa0682690:CDS
GCTGTCAAAAGGGAACTGAA+AGG 0.661239 4_4:+44633004 None:intergenic
GAATCAATAAAAGAGAAGGG+TGG 0.666901 4_4:+44637428 None:intergenic
GTGTTGTGTGGGAAGAAACA+TGG 0.667868 4_4:-44637134 Msa0682690:exon
ACAGCTGGGTTTATACCGGA+CGG 0.670270 4_4:+44632894 None:intergenic
GGATCTGCATGTCGACAATG+GGG 0.672158 4_4:-44632200 Msa0682690:CDS
ACTGAACTGTGACGGCGCTG+AGG 0.673744 4_4:-44634302 Msa0682690:CDS
ACCACTTTATGAATCACCAA+AGG 0.678609 4_4:-44634721 Msa0682690:CDS
CAAATAGCTCAGGAATCGAG+TGG 0.680372 4_4:-44634570 Msa0682690:CDS
AGAGCTGAAATGCTCCCGAG+TGG 0.713532 4_4:-44634916 Msa0682690:CDS
AATGAACAAGTTGTTGATGG+AGG 0.713928 4_4:-44636711 Msa0682690:CDS
TGAAATCAGCCCATTCTGAG+CGG 0.726689 4_4:+44634043 None:intergenic
ACTTGATGCTGAAACAACTG+TGG 0.757022 4_4:-44632660 Msa0682690:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATATTGTTATATGTTTTAA+AGG + chr4_4:44632228-44632247 None:intergenic 10.0%
!!! AAAATGTACAAAAACATTTT+CGG + chr4_4:44631814-44631833 None:intergenic 15.0%
!!! TTATATGTTTTAAAGGTTAA+TGG + chr4_4:44632221-44632240 None:intergenic 15.0%
!!! TTAGTTTTGTTTTGTTTTTT+TGG - chr4_4:44632810-44632829 Msa0682690:intron 15.0%
!!! ATTGGTTTATAAAATTGATT+CGG + chr4_4:44633272-44633291 None:intergenic 15.0%
!!! AAATTTGATTTCAAATGAAT+TGG + chr4_4:44633290-44633309 None:intergenic 15.0%
!!! ATATTGATGGATATTATATT+TGG - chr4_4:44633357-44633376 Msa0682690:CDS 15.0%
!! ATAATTTAGTAGAAAAAACT+TGG + chr4_4:44634015-44634034 None:intergenic 15.0%
!! TCAATAATTTATCAATAGTA+AGG + chr4_4:44635985-44636004 None:intergenic 15.0%
!! TAAACAAATATGATCAATAT+AGG - chr4_4:44636134-44636153 Msa0682690:intron 15.0%
!! TAATCAATGATAAATTTGAA+GGG - chr4_4:44637573-44637592 Msa0682690:five_prime_UTR 15.0%
!! GAATTAATCTTGTAAATTAT+TGG - chr4_4:44637674-44637693 Msa0682690:five_prime_UTR 15.0%
!! ATAGAATATGACAAGTTTAA+GGG + chr4_4:44632395-44632414 None:intergenic 20.0%
!! ATTGAATTCTAGCATTAAAT+TGG + chr4_4:44633130-44633149 None:intergenic 20.0%
!! AATATAGTAATCAATTGTAG+AGG + chr4_4:44633160-44633179 None:intergenic 20.0%
!!! TTGGTTTATAAAATTGATTC+GGG + chr4_4:44633271-44633290 None:intergenic 20.0%
!! TACACAATAGAAAAAGAATT+AGG + chr4_4:44633546-44633565 None:intergenic 20.0%
!!! ATATACTTTAGAGACTTTAT+TGG + chr4_4:44633746-44633765 None:intergenic 20.0%
!! TACTTAAAGAACTAAAATGA+AGG - chr4_4:44633828-44633847 Msa0682690:intron 20.0%
!! TTAAAGACAATTGAAATTAG+TGG - chr4_4:44633923-44633942 Msa0682690:CDS 20.0%
!!! TGATTTGTATATCAGTTTTT+TGG - chr4_4:44635224-44635243 Msa0682690:intron 20.0%
!! TAATATATTACCGATAAATC+TGG + chr4_4:44636045-44636064 None:intergenic 20.0%
!! TATCGGTAATATATTATCTT+CGG - chr4_4:44636049-44636068 Msa0682690:CDS 20.0%
!! TATATTATCTTCGGTAAAAA+TGG - chr4_4:44636058-44636077 Msa0682690:intron 20.0%
!!! ATGTTACTATTTTCTGTTTT+AGG - chr4_4:44636465-44636484 Msa0682690:intron 20.0%
!!! TGTTACTATTTTCTGTTTTA+GGG - chr4_4:44636466-44636485 Msa0682690:intron 20.0%
!! TGTAATTCTATTTCATTGTA+TGG - chr4_4:44637030-44637049 Msa0682690:CDS 20.0%
!! GTAATCAATGATAAATTTGA+AGG - chr4_4:44637572-44637591 Msa0682690:five_prime_UTR 20.0%
!! AATCAATGATAAATTTGAAG+GGG - chr4_4:44637574-44637593 Msa0682690:five_prime_UTR 20.0%
!! AATCTAATTAAATGCAAACT+TGG + chr4_4:44637626-44637645 None:intergenic 20.0%
!! TTTACAAGATTAATTCAACT+TGG + chr4_4:44637670-44637689 None:intergenic 20.0%
! AAAAACCTTAATAAGCATGT+TGG + chr4_4:44631957-44631976 None:intergenic 25.0%
! CAAGATAAGTTTGAATGAAA+TGG + chr4_4:44632138-44632157 None:intergenic 25.0%
! ATGGAATCAATAAAAGAGAA+GGG + chr4_4:44632202-44632221 None:intergenic 25.0%
! AATGGAATCAATAAAAGAGA+AGG + chr4_4:44632203-44632222 None:intergenic 25.0%
! AAGAAGAAAAAAAACCATCT+TGG - chr4_4:44632250-44632269 Msa0682690:intron 25.0%
! AAAGTTGAAGTGAAAAAAGA+AGG - chr4_4:44632302-44632321 Msa0682690:intron 25.0%
! AGAAAATGAACAAGAAAGTT+TGG + chr4_4:44632344-44632363 None:intergenic 25.0%
! GTTTAAGGGAAAATGAAAAT+GGG + chr4_4:44632381-44632400 None:intergenic 25.0%
! AGTTTAAGGGAAAATGAAAA+TGG + chr4_4:44632382-44632401 None:intergenic 25.0%
! GATAGAATATGACAAGTTTA+AGG + chr4_4:44632396-44632415 None:intergenic 25.0%
! TTTATAAGTTTGAGCTTCAT+TGG - chr4_4:44632769-44632788 Msa0682690:intron 25.0%
!! TCATGTCATAATTCTACTTT+TGG - chr4_4:44633032-44633051 Msa0682690:CDS 25.0%
!!! AGAATTGATTTTGACATGTT+TGG - chr4_4:44633082-44633101 Msa0682690:CDS 25.0%
!!! TTAGTGCATTTTTGGTATTT+TGG + chr4_4:44633319-44633338 None:intergenic 25.0%
!!! GATTTTTTTTTCTGTCTTGA+AGG - chr4_4:44633517-44633536 Msa0682690:intron 25.0%
!!! TTTTAGTCTTTGCCATTAAA+AGG - chr4_4:44633777-44633796 Msa0682690:intron 25.0%
! GAAGGATTTGATATTCTTTA+AGG - chr4_4:44633846-44633865 Msa0682690:intron 25.0%
!!! GTATACATTTGTTATTCTCT+TGG - chr4_4:44634039-44634058 Msa0682690:CDS 25.0%
! TCTGCAATCTGTTAAAAAAT+CGG + chr4_4:44634270-44634289 None:intergenic 25.0%
!!! AGTTTGTTGACTAATGTTAT+TGG - chr4_4:44634998-44635017 Msa0682690:intron 25.0%
! TAAAAACTAACATCCCAAAA+CGG + chr4_4:44635503-44635522 None:intergenic 25.0%
! CATACAAGAAATCATTTCAT+CGG + chr4_4:44636097-44636116 None:intergenic 25.0%
!!! TAACTGGTTTTGAATCTAAT+GGG + chr4_4:44636313-44636332 None:intergenic 25.0%
!!! TTAACTGGTTTTGAATCTAA+TGG + chr4_4:44636314-44636333 None:intergenic 25.0%
!! ACACTTAATTTGAGTAAATC+AGG + chr4_4:44636388-44636407 None:intergenic 25.0%
!!! GTTACTATTTTCTGTTTTAG+GGG - chr4_4:44636467-44636486 Msa0682690:intron 25.0%
!!! TTACTATTTTCTGTTTTAGG+GGG - chr4_4:44636468-44636487 Msa0682690:intron 25.0%
!!! CTTTTCTGAAAAAAGTCTAA+TGG - chr4_4:44636872-44636891 Msa0682690:intron 25.0%
! CCAAATAGTAACTGATTAAA+GGG + chr4_4:44636908-44636927 None:intergenic 25.0%
! CCTTTAATCAGTTACTATTT+GGG - chr4_4:44636906-44636925 Msa0682690:CDS 25.0%
! CTTTAATCAGTTACTATTTG+GGG - chr4_4:44636907-44636926 Msa0682690:CDS 25.0%
! AATTCTATTTCATTGTATGG+TGG - chr4_4:44637033-44637052 Msa0682690:CDS 25.0%
!! GATTAATGTGATTTTCTGTT+TGG - chr4_4:44637125-44637144 Msa0682690:exon 25.0%
! AAGTTGTGTATACTTTGATT+AGG - chr4_4:44637380-44637399 Msa0682690:five_prime_UTR 25.0%
! AGTTGTGTATACTTTGATTA+GGG - chr4_4:44637381-44637400 Msa0682690:five_prime_UTR 25.0%
! TAGCTTTCTCTTTCATAAAT+TGG - chr4_4:44637517-44637536 Msa0682690:five_prime_UTR 25.0%
AAAGAAAGGAATGAAGAAGA+AGG + chr4_4:44631924-44631943 None:intergenic 30.0%
CAGTATCAATCAAGAGAAAA+AGG + chr4_4:44631980-44631999 None:intergenic 30.0%
!!! TGTCTTTGTTGCTGTTTTTT+TGG + chr4_4:44632023-44632042 None:intergenic 30.0%
TCAAGACAAATGAAAGTTCT+TGG + chr4_4:44632463-44632482 None:intergenic 30.0%
AAGAACTTTCATTTGTCTTG+AGG - chr4_4:44632462-44632481 Msa0682690:CDS 30.0%
ATTGATAAGCATCTAGATTC+AGG - chr4_4:44632566-44632585 Msa0682690:intron 30.0%
TTGATAAGCATCTAGATTCA+GGG - chr4_4:44632567-44632586 Msa0682690:intron 30.0%
TAGATTCAGGGAAATATGTT+AGG - chr4_4:44632579-44632598 Msa0682690:intron 30.0%
AATCAATTGTTGTCTTCTCA+TGG + chr4_4:44632666-44632685 None:intergenic 30.0%
! GTTTTCAATACCTTCGATTT+TGG + chr4_4:44632742-44632761 None:intergenic 30.0%
!! ATCGAAGGTATTGAAAACTT+TGG - chr4_4:44632744-44632763 Msa0682690:intron 30.0%
!!! TTTGGTGTTTAATGTTTTGC+AGG - chr4_4:44632828-44632847 Msa0682690:intron 30.0%
!! TGTCATAATTCTACTTTTGG+AGG - chr4_4:44633035-44633054 Msa0682690:CDS 30.0%
GTAATCAATTGTAGAGGAAA+AGG + chr4_4:44633154-44633173 None:intergenic 30.0%
TCAATTCACTTTGACATGAA+CGG - chr4_4:44633197-44633216 Msa0682690:intron 30.0%
ACCAAAAATGCACTAAGTTA+AGG - chr4_4:44633323-44633342 Msa0682690:CDS 30.0%
ATCCATCAATATCAATTCCA+AGG + chr4_4:44633349-44633368 None:intergenic 30.0%
TTCGTACTAAATTTACAGCA+AGG + chr4_4:44633687-44633706 None:intergenic 30.0%
! TTGGAGAGAGTGATATTTTA+GGG + chr4_4:44633727-44633746 None:intergenic 30.0%
! ATTGGAGAGAGTGATATTTT+AGG + chr4_4:44633728-44633747 None:intergenic 30.0%
TCTTTGCCATTAAAAGGTTA+GGG - chr4_4:44633783-44633802 Msa0682690:intron 30.0%
ACAATTGAAATTAGTGGTCA+TGG - chr4_4:44633929-44633948 Msa0682690:CDS 30.0%
! TGTTAGTTTAGAACCTACAA+AGG - chr4_4:44634140-44634159 Msa0682690:intron 30.0%
AGTATGGAATTTACCTTTGT+AGG + chr4_4:44634156-44634175 None:intergenic 30.0%
TTACATCTTATTCGGAAGTA+TGG + chr4_4:44634172-44634191 None:intergenic 30.0%
! CCACACTTTTACATCTTATT+CGG + chr4_4:44634180-44634199 None:intergenic 30.0%
CTGCAATCTGTTAAAAAATC+GGG + chr4_4:44634269-44634288 None:intergenic 30.0%
TCCTTAAAGATCGTTTATCT+TGG - chr4_4:44634292-44634311 Msa0682690:CDS 30.0%
ACCAAGATAAACGATCTTTA+AGG + chr4_4:44634296-44634315 None:intergenic 30.0%
GAAACATTGTGAAAACTTCT+AGG + chr4_4:44634335-44634354 None:intergenic 30.0%
TCTTAGATACACTACAACTT+TGG - chr4_4:44634515-44634534 Msa0682690:CDS 30.0%
ATCTGGTGCATAGTAATAAA+AGG - chr4_4:44634571-44634590 Msa0682690:CDS 30.0%
!!! CATTTTGATTCCACTTTTGA+AGG - chr4_4:44634620-44634639 Msa0682690:intron 30.0%
GTCTTACTTCAAGATTTAAG+TGG + chr4_4:44634785-44634804 None:intergenic 30.0%
TAATAGTGAACTTACTGCAA+TGG + chr4_4:44634947-44634966 None:intergenic 30.0%
ATATATTAGGCAAATAGCTC+AGG - chr4_4:44635044-44635063 Msa0682690:intron 30.0%
AGGAAACAAATCATTTCATG+TGG + chr4_4:44635150-44635169 None:intergenic 30.0%
!! GAAATGATTTGTTTCCTTGA+AGG - chr4_4:44635153-44635172 Msa0682690:CDS 30.0%
AATCAAATAATCATGCCTCT+TGG - chr4_4:44635684-44635703 Msa0682690:intron 30.0%
ATCAAATAATCATGCCTCTT+GGG - chr4_4:44635685-44635704 Msa0682690:intron 30.0%
! AGTGAAGATTTAACTTCATC+AGG + chr4_4:44635871-44635890 None:intergenic 30.0%
!! AAGAAGATGCTTTTGTTTCT+AGG - chr4_4:44635935-44635954 Msa0682690:intron 30.0%
!!! AGAAGATGCTTTTGTTTCTA+GGG - chr4_4:44635936-44635955 Msa0682690:intron 30.0%
!! TATGTAAGAAGAGGTTGATA+GGG + chr4_4:44636015-44636034 None:intergenic 30.0%
! TTATGTAAGAAGAGGTTGAT+AGG + chr4_4:44636016-44636035 None:intergenic 30.0%
TGATTTCTTGTATGTAGTTG+TGG - chr4_4:44636103-44636122 Msa0682690:intron 30.0%
ATCAATATAGGTATGTACTG+AGG - chr4_4:44636146-44636165 Msa0682690:intron 30.0%
CAATAGAGAGGAAAAAAGAA+GGG + chr4_4:44636345-44636364 None:intergenic 30.0%
TCAATAGAGAGGAAAAAAGA+AGG + chr4_4:44636346-44636365 None:intergenic 30.0%
GAAAAATTAGCTCAATAGAG+AGG + chr4_4:44636357-44636376 None:intergenic 30.0%
TCAAATTAAGTGTCTTCCTA+TGG - chr4_4:44636395-44636414 Msa0682690:intron 30.0%
GCAAGATAATGTTGTAATCA+TGG - chr4_4:44636648-44636667 Msa0682690:intron 30.0%
CCCTTTAATCAGTTACTATT+TGG - chr4_4:44636905-44636924 Msa0682690:CDS 30.0%
CCCAAATAGTAACTGATTAA+AGG + chr4_4:44636909-44636928 None:intergenic 30.0%
! GATTTTATGCTGTTCATTGA+AGG - chr4_4:44637001-44637020 Msa0682690:CDS 30.0%
CTTATGTTTAGAAAGGAAGT+TGG - chr4_4:44637067-44637086 Msa0682690:CDS 30.0%
! AGTTGGAAGGTTTGTAATTT+TGG - chr4_4:44637084-44637103 Msa0682690:CDS 30.0%
ACATTAATCTCGCGTTATAA+AGG + chr4_4:44637114-44637133 None:intergenic 30.0%
! TGATTTGCAAATACAAACAC+CGG + chr4_4:44637165-44637184 None:intergenic 30.0%
TTTGTATTTGCAAATCAAGC+TGG - chr4_4:44637168-44637187 Msa0682690:five_prime_UTR 30.0%
GATAAAATATTTGACGAGTC+TGG - chr4_4:44637240-44637259 Msa0682690:five_prime_UTR 30.0%
! GCATTATTCATGTTAAGTTG+AGG + chr4_4:44637316-44637335 None:intergenic 30.0%
GTTGTGTATACTTTGATTAG+GGG - chr4_4:44637382-44637401 Msa0682690:five_prime_UTR 30.0%
TTGATTACTAGCATTCACAT+TGG + chr4_4:44637560-44637579 None:intergenic 30.0%
AAATTTGAAGGGGAAAAATC+AGG - chr4_4:44637584-44637603 Msa0682690:five_prime_UTR 30.0%
! TAGTATCTGTCTAGTTTGAA+AGG - chr4_4:44637752-44637771 Msa0682690:five_prime_UTR 30.0%
CTAAAGCAAATCATCTTGAA+AGG - chr4_4:44637788-44637807 Msa0682690:five_prime_UTR 30.0%
AGCTCAGATATCAAGAAACA+TGG + chr4_4:44631864-44631883 None:intergenic 35.0%
! CTTAATAAGCATGTTGGTGA+TGG + chr4_4:44631951-44631970 None:intergenic 35.0%
CATCACCAACATGCTTATTA+AGG - chr4_4:44631949-44631968 Msa0682690:three_prime_UTR 35.0%
ACAAGACTATATTCCTTCCT+AGG - chr4_4:44632040-44632059 Msa0682690:three_prime_UTR 35.0%
GAATCAATAAAAGAGAAGGG+TGG + chr4_4:44632199-44632218 None:intergenic 35.0%
AAAAACCATCTTGGTTCACA+AGG - chr4_4:44632259-44632278 Msa0682690:intron 35.0%
! TACTGAACAAGTTGAAGCAT+TGG - chr4_4:44632607-44632626 Msa0682690:intron 35.0%
!! AACAAGTTGAAGCATTGGAA+AGG - chr4_4:44632612-44632631 Msa0682690:intron 35.0%
!! ACAAGTTGAAGCATTGGAAA+GGG - chr4_4:44632613-44632632 Msa0682690:intron 35.0%
GGTTCAATGTTGGAAAGAAT+AGG + chr4_4:44632698-44632717 None:intergenic 35.0%
! GATCTGTTTAGGTTCAATGT+TGG + chr4_4:44632708-44632727 None:intergenic 35.0%
CATTGAACCTAAACAGATCA+AGG - chr4_4:44632709-44632728 Msa0682690:intron 35.0%
AACCTAAACAGATCAAGGTT+TGG - chr4_4:44632714-44632733 Msa0682690:intron 35.0%
AACCAAACCTTGATCTGTTT+AGG + chr4_4:44632719-44632738 None:intergenic 35.0%
TAGAGAGAAGCAAAGAAAAG+AGG - chr4_4:44632853-44632872 Msa0682690:CDS 35.0%
TGCAATGAACAAGTTGTTGA+TGG - chr4_4:44632910-44632929 Msa0682690:CDS 35.0%
! AATGAACAAGTTGTTGATGG+AGG - chr4_4:44632913-44632932 Msa0682690:CDS 35.0%
! TGTTGATGGAGGAAAATGAT+AGG - chr4_4:44632924-44632943 Msa0682690:intron 35.0%
! TGTGTGAGAATGGATTTATG+AGG - chr4_4:44632972-44632991 Msa0682690:CDS 35.0%
TTGCATACTGTAAGTGTATG+AGG - chr4_4:44633001-44633020 Msa0682690:CDS 35.0%
!! CATAATTCTACTTTTGGAGG+AGG - chr4_4:44633038-44633057 Msa0682690:CDS 35.0%
! GCCTTAACTTAGTGCATTTT+TGG + chr4_4:44633327-44633346 None:intergenic 35.0%
TACTGATGCAAGTTGTGATT+CGG - chr4_4:44633412-44633431 Msa0682690:CDS 35.0%
TTTGACAGAGTTCCTTTCAA+AGG - chr4_4:44633601-44633620 Msa0682690:intron 35.0%
GTCTTTGCCATTAAAAGGTT+AGG - chr4_4:44633782-44633801 Msa0682690:intron 35.0%
! GTTAGTCCCTAACCTTTTAA+TGG + chr4_4:44633792-44633811 None:intergenic 35.0%
! AATTAGTGGTCATGGCTTTT+AGG - chr4_4:44633937-44633956 Msa0682690:CDS 35.0%
!! CTATGCCGATTTGAAAATGA+AGG - chr4_4:44633989-44634008 Msa0682690:CDS 35.0%
!! CTTGGCCTTCATTTTCAAAT+CGG + chr4_4:44633997-44634016 None:intergenic 35.0%
CCGAATAAGATGTAAAAGTG+TGG - chr4_4:44634177-44634196 Msa0682690:intron 35.0%
TTTGATGAACTCAACTTGCA+TGG + chr4_4:44634228-44634247 None:intergenic 35.0%
CTGTGTGTAAATAAGCTCAA+TGG + chr4_4:44634376-44634395 None:intergenic 35.0%
CATTGAGCTTATTTACACAC+AGG - chr4_4:44634374-44634393 Msa0682690:intron 35.0%
CAAATCTGAAGGTTACTCAA+AGG + chr4_4:44634445-44634464 None:intergenic 35.0%
TATGTCTGTAGCAAATCTGA+AGG + chr4_4:44634456-44634475 None:intergenic 35.0%
TACACTACAACTTTGGACAA+TGG - chr4_4:44634522-44634541 Msa0682690:CDS 35.0%
! GGTGAGTATATTTTGTCATC+TGG - chr4_4:44634554-44634573 Msa0682690:CDS 35.0%
CTTTCACAAACCTTCAAAAG+TGG + chr4_4:44634633-44634652 None:intergenic 35.0%
!! CACTTTTGAAGGTTTGTGAA+AGG - chr4_4:44634631-44634650 Msa0682690:intron 35.0%
GATTTAAGTGGTCTACAATG+TGG + chr4_4:44634773-44634792 None:intergenic 35.0%
! TTATTCTTGTCTTTTAGCCG+TGG - chr4_4:44634860-44634879 Msa0682690:CDS 35.0%
ACCACTTTATGAATCACCAA+AGG - chr4_4:44634903-44634922 Msa0682690:CDS 35.0%
! ACCTTTGGTGATTCATAAAG+TGG + chr4_4:44634907-44634926 None:intergenic 35.0%
ACTTTATGAATCACCAAAGG+TGG - chr4_4:44634906-44634925 Msa0682690:CDS 35.0%
!! TTATTGGTGCCTTTTGTGAT+AGG - chr4_4:44635014-44635033 Msa0682690:intron 35.0%
GATAGGCACTTCGATATATT+AGG - chr4_4:44635031-44635050 Msa0682690:intron 35.0%
! GTAAATGGATTCAGTGATGA+TGG - chr4_4:44635290-44635309 Msa0682690:CDS 35.0%
AGAAGAGCTACTTAGATTCT+TGG + chr4_4:44635372-44635391 None:intergenic 35.0%
! ATTTTCAACAGTGTCCGTTT+TGG - chr4_4:44635486-44635505 Msa0682690:CDS 35.0%
! TTTTCAACAGTGTCCGTTTT+GGG - chr4_4:44635487-44635506 Msa0682690:CDS 35.0%
GAACACAATTGAACATGAAG+AGG - chr4_4:44635707-44635726 Msa0682690:intron 35.0%
TCAAAATGTCTTCAGTGTTG+TGG - chr4_4:44635764-44635783 Msa0682690:intron 35.0%
CACTATACATAGCATGCTAA+TGG + chr4_4:44635793-44635812 None:intergenic 35.0%
TGCAGATGCTTGAAGTTATT+AGG - chr4_4:44635890-44635909 Msa0682690:intron 35.0%
CTTGAAGTTATTAGGCTTGA+AGG - chr4_4:44635898-44635917 Msa0682690:intron 35.0%
ATAAGCTGAGCCAGATTTAT+CGG - chr4_4:44636032-44636051 Msa0682690:CDS 35.0%
TTCTTCTTGCAGATATGTAG+TGG - chr4_4:44636182-44636201 Msa0682690:CDS 35.0%
TCTTCTTGCAGATATGTAGT+GGG - chr4_4:44636183-44636202 Msa0682690:CDS 35.0%
TCTGGGAACATTTCATCAAT+TGG + chr4_4:44636254-44636273 None:intergenic 35.0%
TTGAATCTAATGGGATGATG+CGG + chr4_4:44636304-44636323 None:intergenic 35.0%
AGAAGGGAACAAAACTTAAC+TGG + chr4_4:44636329-44636348 None:intergenic 35.0%
AATTAAGTGTCTTCCTATGG+CGG - chr4_4:44636398-44636417 Msa0682690:intron 35.0%
AATCAGTTACTATTTGGGGA+CGG - chr4_4:44636911-44636930 Msa0682690:CDS 35.0%
TATGCTGTTCATTGAAGGTA+TGG - chr4_4:44637006-44637025 Msa0682690:CDS 35.0%
TCTATTTCATTGTATGGTGG+CGG - chr4_4:44637036-44637055 Msa0682690:CDS 35.0%
GGTGGTTCTTATGTTTAGAA+AGG - chr4_4:44637060-44637079 Msa0682690:CDS 35.0%
TGTTTAGAAAGGAAGTTGGA+AGG - chr4_4:44637071-44637090 Msa0682690:CDS 35.0%
AGCTTTACAAGACATCACAT+TGG - chr4_4:44637218-44637237 Msa0682690:five_prime_UTR 35.0%
! TTTTGCCAAGTTAATGCAAC+AGG - chr4_4:44637284-44637303 Msa0682690:five_prime_UTR 35.0%
CAATGAACAGTGTTATCTTC+TGG + chr4_4:44637495-44637514 None:intergenic 35.0%
!! TTGGTGATGGAGGAAAAGAA+AGG + chr4_4:44631938-44631957 None:intergenic 40.0%
!! AATAAGCATGTTGGTGATGG+AGG + chr4_4:44631948-44631967 None:intergenic 40.0%
AAGTTGTCTTTGTCCTAGGA+AGG + chr4_4:44632056-44632075 None:intergenic 40.0%
AGTGAAGTTGTCTTTGTCCT+AGG + chr4_4:44632060-44632079 None:intergenic 40.0%
GAAATGGAGCTTGAGTTAGA+AGG + chr4_4:44632122-44632141 None:intergenic 40.0%
CATTACCTTGTGAACCAAGA+TGG + chr4_4:44632267-44632286 None:intergenic 40.0%
CATCTTGGTTCACAAGGTAA+TGG - chr4_4:44632265-44632284 Msa0682690:intron 40.0%
TTGAGGTTTGTGTGTTGTGT+GGG - chr4_4:44632479-44632498 Msa0682690:intron 40.0%
AAGAAACATGGCTATGGCTA+TGG - chr4_4:44632502-44632521 Msa0682690:intron 40.0%
CATAGAGAAACTAGTAGCAG+TGG - chr4_4:44632536-44632555 Msa0682690:intron 40.0%
TGTTGTCTTCTCATGGAACT+AGG + chr4_4:44632659-44632678 None:intergenic 40.0%
! AGGTTTGGTTCCAAAATCGA+AGG - chr4_4:44632729-44632748 Msa0682690:intron 40.0%
AGCAAAGAAAAGAGGCTTCA+AGG - chr4_4:44632861-44632880 Msa0682690:CDS 40.0%
CAAGGCTTCAAACTGTGAAT+AGG - chr4_4:44632879-44632898 Msa0682690:CDS 40.0%
!! AATTCTACTTTTGGAGGAGG+CGG - chr4_4:44633041-44633060 Msa0682690:CDS 40.0%
AATGCACTAAGTTAAGGCCT+TGG - chr4_4:44633329-44633348 Msa0682690:CDS 40.0%
GGCCTTGGAATTGATATTGA+TGG - chr4_4:44633344-44633363 Msa0682690:CDS 40.0%
GCATCTCTCTTAGAATTCTG+AGG + chr4_4:44633449-44633468 None:intergenic 40.0%
! AACCCTGCTGGGTAATTTTT+AGG - chr4_4:44633473-44633492 Msa0682690:intron 40.0%
AGCCTAAAAATTACCCAGCA+GGG + chr4_4:44633478-44633497 None:intergenic 40.0%
AAGCCTAAAAATTACCCAGC+AGG + chr4_4:44633479-44633498 None:intergenic 40.0%
TTGCAGACTCCTATCAATTG+CGG - chr4_4:44633571-44633590 Msa0682690:intron 40.0%
! TACAGGAACTGCTGTTGATT+GGG - chr4_4:44633625-44633644 Msa0682690:intron 40.0%
AAATAAGAGACCTTCATCCC+AGG + chr4_4:44633659-44633678 None:intergenic 40.0%
AAGGTTAGGGACTAACATGA+CGG - chr4_4:44633796-44633815 Msa0682690:intron 40.0%
GCGATTTCACAAAGTTGTAG+TGG - chr4_4:44634093-44634112 Msa0682690:intron 40.0%
! TTCACAAAGTTGTAGTGGAG+TGG - chr4_4:44634098-44634117 Msa0682690:intron 40.0%
! GTTTTCACAATGTTTCCTGC+CGG - chr4_4:44634339-44634358 Msa0682690:CDS 40.0%
ATCTAAGAGTCCAGAAATCC+CGG + chr4_4:44634503-44634522 None:intergenic 40.0%
! TACTTGATTCGACCATGTGA+TGG - chr4_4:44634732-44634751 Msa0682690:CDS 40.0%
TAAAGTGGTCGTAGTACTTC+TGG + chr4_4:44634892-44634911 None:intergenic 40.0%
TTATGAATCACCAAAGGTGG+TGG - chr4_4:44634909-44634928 Msa0682690:CDS 40.0%
!!! ATTTTTTGAGCCACCACCTT+TGG + chr4_4:44634922-44634941 None:intergenic 40.0%
! ATCGAAGTGCCTATCACAAA+AGG + chr4_4:44635026-44635045 None:intergenic 40.0%
AATCGATAGACCAGAACTGT+GGG + chr4_4:44635188-44635207 None:intergenic 40.0%
AAATCGATAGACCAGAACTG+TGG + chr4_4:44635189-44635208 None:intergenic 40.0%
CTGATGTATTACATCTGCAG+AGG - chr4_4:44635254-44635273 Msa0682690:CDS 40.0%
!! ATGGATTCAGTGATGATGGT+TGG - chr4_4:44635294-44635313 Msa0682690:CDS 40.0%
TGGTCTATACTGAACTGTGA+CGG - chr4_4:44635314-44635333 Msa0682690:CDS 40.0%
AATTCCTCCAAGCAATGTGA+GGG + chr4_4:44635408-44635427 None:intergenic 40.0%
!!! GGTTTTGGTTCGCTTTCTAA+GGG - chr4_4:44635554-44635573 Msa0682690:CDS 40.0%
TGATTGCCAGTGAATCTTGT+AGG + chr4_4:44635669-44635688 None:intergenic 40.0%
TGTTCAATTGTGTTCCCAAG+AGG + chr4_4:44635702-44635721 None:intergenic 40.0%
TAGGGATATTCACCTGTTAC+AGG - chr4_4:44635954-44635973 Msa0682690:intron 40.0%
! AGTAAGGCATTACCTGTAAC+AGG + chr4_4:44635969-44635988 None:intergenic 40.0%
! GCGGATGAATGTGATGATTT+TGG - chr4_4:44636417-44636436 Msa0682690:intron 40.0%
!!! TCTGTTTTAGGGGGATAAGA+AGG - chr4_4:44636477-44636496 Msa0682690:intron 40.0%
AGGCAATAGTCAACACTGAT+CGG + chr4_4:44636603-44636622 None:intergenic 40.0%
CTTGCATAGTGCTGTCAAAA+GGG + chr4_4:44636633-44636652 None:intergenic 40.0%
TCTTGCATAGTGCTGTCAAA+AGG + chr4_4:44636634-44636653 None:intergenic 40.0%
AAGCAGTTACACTAGCTCAA+TGG - chr4_4:44636782-44636801 Msa0682690:intron 40.0%
TGTAGACTTGCCTATAACTC+TGG + chr4_4:44636813-44636832 None:intergenic 40.0%
CTGAGATCAGATTCTCTTGT+TGG - chr4_4:44636939-44636958 Msa0682690:CDS 40.0%
ACTTGATGCTGAAACAACTG+TGG - chr4_4:44636964-44636983 Msa0682690:CDS 40.0%
! GAGTTGTTTCCAACATGTCA+AGG + chr4_4:44637194-44637213 None:intergenic 40.0%
AACCACCTGTTGCATTAACT+TGG + chr4_4:44637292-44637311 None:intergenic 40.0%
TGTTAGCACTTTCCATGCAA+TGG + chr4_4:44637472-44637491 None:intergenic 40.0%
GAGTGAAGTTGAGACTTGTA+TGG - chr4_4:44637705-44637724 Msa0682690:five_prime_UTR 40.0%
TGGAGCTTGAGTTAGAAGGA+AGG + chr4_4:44632118-44632137 None:intergenic 45.0%
CTTGAGGTTTGTGTGTTGTG+TGG - chr4_4:44632478-44632497 Msa0682690:intron 45.0%
GTGTTGTGTGGGAAGAAACA+TGG - chr4_4:44632490-44632509 Msa0682690:intron 45.0%
TGTGGGAAGAAACATGGCTA+TGG - chr4_4:44632496-44632515 Msa0682690:intron 45.0%
AGAGAAACTAGTAGCAGTGG+TGG - chr4_4:44632539-44632558 Msa0682690:intron 45.0%
CTTCTCATGGAACTAGGCTT+AGG + chr4_4:44632653-44632672 None:intergenic 45.0%
TCACAGCTTGTGTGTGAGAA+TGG - chr4_4:44632962-44632981 Msa0682690:CDS 45.0%
! GCATCAGTATTTGCTGCTGA+TGG + chr4_4:44633401-44633420 None:intergenic 45.0%
AAGTCTCCTCCGCAATTGAT+AGG + chr4_4:44633583-44633602 None:intergenic 45.0%
GAGTTCCTTTCAAAGGCTAC+AGG - chr4_4:44633608-44633627 Msa0682690:intron 45.0%
CAGTTCCTGTAGCCTTTGAA+AGG + chr4_4:44633616-44633635 None:intergenic 45.0%
CTACAGGAACTGCTGTTGAT+TGG - chr4_4:44633624-44633643 Msa0682690:intron 45.0%
TATCTTGGTTTCGCGAGTGT+CGG - chr4_4:44634307-44634326 Msa0682690:CDS 45.0%
ACAATGTTTCCTGCCGGAAA+TGG - chr4_4:44634345-44634364 Msa0682690:CDS 45.0%
CTCAATGGTTCCTCCATTTC+CGG + chr4_4:44634361-44634380 None:intergenic 45.0%
TCTAAGAGTCCAGAAATCCC+GGG + chr4_4:44634502-44634521 None:intergenic 45.0%
TTTGGACAATGGCAGTCTTG+TGG - chr4_4:44634533-44634552 Msa0682690:CDS 45.0%
GAGCAGCAGCAGTTGAATTA+GGG + chr4_4:44634680-44634699 None:intergenic 45.0%
TGAGCAGCAGCAGTTGAATT+AGG + chr4_4:44634681-44634700 None:intergenic 45.0%
! TTGATTCGACCATGTGATGG+TGG - chr4_4:44634735-44634754 Msa0682690:CDS 45.0%
ATTGAACCTCCACCATCACA+TGG + chr4_4:44634747-44634766 None:intergenic 45.0%
CAAATAGCTCAGGAATCGAG+TGG - chr4_4:44635054-44635073 Msa0682690:intron 45.0%
TCGAGTGGTGAAGTGGTATA+CGG - chr4_4:44635069-44635088 Msa0682690:intron 45.0%
GGTGAAGTGGTATACGGATT+AGG - chr4_4:44635075-44635094 Msa0682690:intron 45.0%
CTGAATGTTCGCAAAACAGC+AGG + chr4_4:44635108-44635127 None:intergenic 45.0%
CATTCAGCCAAAGATTGAGC+AGG - chr4_4:44635121-44635140 Msa0682690:CDS 45.0%
GGCTTCAATGACGCTGTAAA+TGG - chr4_4:44635275-44635294 Msa0682690:CDS 45.0%
GAATTCCTCCAAGCAATGTG+AGG + chr4_4:44635409-44635428 None:intergenic 45.0%
!!! CGGTTTTGGTTCGCTTTCTA+AGG - chr4_4:44635553-44635572 Msa0682690:CDS 45.0%
TGAAATCAGCCCATTCTGAG+CGG + chr4_4:44635584-44635603 None:intergenic 45.0%
ATGAGGCCTACAAGATTCAC+TGG - chr4_4:44635660-44635679 Msa0682690:intron 45.0%
CATCTTCTTGAGCAAGAGAG+TGG + chr4_4:44635924-44635943 None:intergenic 45.0%
GGCTCAGCTTATGTAAGAAG+AGG + chr4_4:44636024-44636043 None:intergenic 45.0%
TCATCACATTCATCCGCCAT+AGG + chr4_4:44636414-44636433 None:intergenic 45.0%
AGGATGCCGTGAATACAAAC+CGG - chr4_4:44636497-44636516 Msa0682690:intron 45.0%
! CAGTGTCCGGTTTGTATTCA+CGG + chr4_4:44636506-44636525 None:intergenic 45.0%
! TCAACACTGATCGGGTGTTT+TGG + chr4_4:44636594-44636613 None:intergenic 45.0%
GGCAATAGTCAACACTGATC+GGG + chr4_4:44636602-44636621 None:intergenic 45.0%
GCTGTCAAAAGGGAACTGAA+AGG + chr4_4:44636623-44636642 None:intergenic 45.0%
TGTGATTTCCTCTGTGCAGA+GGG - chr4_4:44636690-44636709 Msa0682690:CDS 45.0%
GTTTATACCGGACGGAGAAA+TGG + chr4_4:44636725-44636744 None:intergenic 45.0%
ACCAACAGCTGGGTTTATAC+CGG + chr4_4:44636737-44636756 None:intergenic 45.0%
AAAGTTTGGCACCAACAGCT+GGG + chr4_4:44636747-44636766 None:intergenic 45.0%
TGGAGAACCAGGAGAAAGTT+TGG + chr4_4:44636761-44636780 None:intergenic 45.0%
TGAGCTAGTGTAACTGCTTC+TGG + chr4_4:44636781-44636800 None:intergenic 45.0%
AACAGCATAAAATCGCGTCC+TGG + chr4_4:44636995-44637014 None:intergenic 45.0%
!! ATTTCATTGTATGGTGGCGG+AGG - chr4_4:44637039-44637058 Msa0682690:CDS 45.0%
TGCCAAGTTAATGCAACAGG+TGG - chr4_4:44637287-44637306 Msa0682690:five_prime_UTR 45.0%
AGAGATGCTACTAACCCTGC+TGG - chr4_4:44633461-44633480 Msa0682690:intron 50.0%
GAGATGCTACTAACCCTGCT+GGG - chr4_4:44633462-44633481 Msa0682690:intron 50.0%
CAGACTCCTATCAATTGCGG+AGG - chr4_4:44633574-44633593 Msa0682690:intron 50.0%
TTGATTGGGTCCAGATGCCT+GGG - chr4_4:44633639-44633658 Msa0682690:intron 50.0%
TGTTATTCTCTTGGCCAGCC+TGG - chr4_4:44634048-44634067 Msa0682690:CDS 50.0%
GCAAAGATCCCAACCGAATC+CGG + chr4_4:44634075-44634094 None:intergenic 50.0%
ATGTTTCCTGCCGGAAATGG+AGG - chr4_4:44634348-44634367 Msa0682690:CDS 50.0%
GTTTGTGAAAGGTCCCTGTC+TGG - chr4_4:44634642-44634661 Msa0682690:intron 50.0%
GTCGAATCAAGTAGCCACTC+GGG + chr4_4:44634725-44634744 None:intergenic 50.0%
GGTCGAATCAAGTAGCCACT+CGG + chr4_4:44634726-44634745 None:intergenic 50.0%
!! ATTCGACCATGTGATGGTGG+AGG - chr4_4:44634738-44634757 Msa0682690:CDS 50.0%
AGTACTTCTGGCACACTCCA+CGG + chr4_4:44634880-44634899 None:intergenic 50.0%
TCAGGAATCGAGTGGTGAAG+TGG - chr4_4:44635062-44635081 Msa0682690:intron 50.0%
GTGGCTACCTGCTCAATCTT+TGG + chr4_4:44635131-44635150 None:intergenic 50.0%
AGCAATGTGAGGGAACTTGC+TGG + chr4_4:44635398-44635417 None:intergenic 50.0%
GCAAGTTCCCTCACATTGCT+TGG - chr4_4:44635398-44635417 Msa0682690:intron 50.0%
AGTTCCCTCACATTGCTTGG+AGG - chr4_4:44635401-44635420 Msa0682690:intron 50.0%
AGAAAGCGAACCAAAACCGC+TGG + chr4_4:44635552-44635571 None:intergenic 50.0%
TAAGGGAACACCGCTCAGAA+TGG - chr4_4:44635571-44635590 Msa0682690:intron 50.0%
AAGGGAACACCGCTCAGAAT+GGG - chr4_4:44635572-44635591 Msa0682690:intron 50.0%
TCCTGCTTTCAGTGATGCAG+CGG + chr4_4:44635622-44635641 None:intergenic 50.0%
CAGGAACCTATGCCTATCCA+GGG - chr4_4:44635637-44635656 Msa0682690:intron 50.0%
AATCTTGTAGGCCTCATCCC+TGG + chr4_4:44635657-44635676 None:intergenic 50.0%
GGACTGATGAGAACGCTGTT+GGG - chr4_4:44636204-44636223 Msa0682690:CDS 50.0%
GTTCCCAGATGATGCTCCAT+TGG - chr4_4:44636265-44636284 Msa0682690:intron 50.0%
! GCACCAATGGAGCATCATCT+GGG + chr4_4:44636271-44636290 None:intergenic 50.0%
CGTGAATACAAACCGGACAC+TGG - chr4_4:44636504-44636523 Msa0682690:intron 50.0%
CTGACGTCAAATCCAGTGTC+CGG + chr4_4:44636519-44636538 None:intergenic 50.0%
GTGAACCCAACGACAACTCA+CGG - chr4_4:44636547-44636566 Msa0682690:intron 50.0%
GTGTGATTTCCTCTGTGCAG+AGG - chr4_4:44636689-44636708 Msa0682690:CDS 50.0%
ACAGCTGGGTTTATACCGGA+CGG + chr4_4:44636733-44636752 None:intergenic 50.0%
TCCGGTATAAACCCAGCTGT+TGG - chr4_4:44636733-44636752 Msa0682690:CDS 50.0%
GAAAGTTTGGCACCAACAGC+TGG + chr4_4:44636748-44636767 None:intergenic 50.0%
!! GTTGGTGCCAAACTTTCTCC+TGG - chr4_4:44636751-44636770 Msa0682690:CDS 50.0%
! GTAACTGCTTCTGGAGAACC+AGG + chr4_4:44636772-44636791 None:intergenic 50.0%
GAAACAACTGTGGCATCACC+AGG - chr4_4:44636974-44636993 Msa0682690:CDS 50.0%
TTTGGTATTGCAGTCGCAGC+CGG - chr4_4:44637143-44637162 Msa0682690:five_prime_UTR 50.0%
!! TCAAGCTGGCCTTGACATGT+TGG - chr4_4:44637182-44637201 Msa0682690:five_prime_UTR 50.0%
ATTTGACGAGTCTGGTCGCA+AGG - chr4_4:44637248-44637267 Msa0682690:five_prime_UTR 50.0%
! GGTTTGCTTATCTGCCAGCT+GGG - chr4_4:44637403-44637422 Msa0682690:five_prime_UTR 50.0%
TGGGATCTGCATGTCGACAA+TGG - chr4_4:44637422-44637441 Msa0682690:five_prime_UTR 50.0%
GGGATCTGCATGTCGACAAT+GGG - chr4_4:44637423-44637442 Msa0682690:five_prime_UTR 50.0%
GGATCTGCATGTCGACAATG+GGG - chr4_4:44637424-44637443 Msa0682690:five_prime_UTR 50.0%
CATGGCTATGGCTATGGCTG+TGG - chr4_4:44632508-44632527 Msa0682690:intron 55.0%
GTTGATTGGGTCCAGATGCC+TGG - chr4_4:44633638-44633657 Msa0682690:intron 55.0%
AGACCTTCATCCCAGGCATC+TGG + chr4_4:44633652-44633671 None:intergenic 55.0%
ATGGTTCCTCCATTTCCGGC+AGG + chr4_4:44634357-44634376 None:intergenic 55.0%
! GAAAGGTCCCTGTCTGGTTC+TGG - chr4_4:44634648-44634667 Msa0682690:intron 55.0%
AGAGCTGAAATGCTCCCGAG+TGG - chr4_4:44634708-44634727 Msa0682690:CDS 55.0%
GTGGGCACGTATGACCTTCA+AGG + chr4_4:44635170-44635189 None:intergenic 55.0%
GTCATACGTGCCCACAGTTC+TGG - chr4_4:44635175-44635194 Msa0682690:intron 55.0%
CTTGCAGAACGTTCCTCCAG+CGG - chr4_4:44635533-44635552 Msa0682690:CDS 55.0%
! GAACGTTCCTCCAGCGGTTT+TGG - chr4_4:44635539-44635558 Msa0682690:CDS 55.0%
AAGCGAACCAAAACCGCTGG+AGG + chr4_4:44635549-44635568 None:intergenic 55.0%
TCCGCTGCATCACTGAAAGC+AGG - chr4_4:44635618-44635637 Msa0682690:intron 55.0%
GCAGGAACCTATGCCTATCC+AGG - chr4_4:44635636-44635655 Msa0682690:intron 55.0%
CCTCATCCCTGGATAGGCAT+AGG + chr4_4:44635646-44635665 None:intergenic 55.0%
CCTATGCCTATCCAGGGATG+AGG - chr4_4:44635643-44635662 Msa0682690:intron 55.0%
TGTAGGCCTCATCCCTGGAT+AGG + chr4_4:44635652-44635671 None:intergenic 55.0%
GGGACTGATGAGAACGCTGT+TGG - chr4_4:44636203-44636222 Msa0682690:CDS 55.0%
! GGCACCAATGGAGCATCATC+TGG + chr4_4:44636272-44636291 None:intergenic 55.0%
! GATGCTCCATTGGTGCCTTC+TGG - chr4_4:44636275-44636294 Msa0682690:intron 55.0%
!! CGGAAACCAGAAGGCACCAA+TGG + chr4_4:44636284-44636303 None:intergenic 55.0%
GGGATGATGCGGAAACCAGA+AGG + chr4_4:44636293-44636312 None:intergenic 55.0%
CGGACACTGGATTTGACGTC+AGG - chr4_4:44636517-44636536 Msa0682690:intron 55.0%
CACTGCCGTGAGTTGTCGTT+GGG + chr4_4:44636555-44636574 None:intergenic 55.0%
!! TCATTGTATGGTGGCGGAGG+TGG - chr4_4:44637042-44637061 Msa0682690:CDS 55.0%
! GGGTTTGCTTATCTGCCAGC+TGG - chr4_4:44637402-44637421 Msa0682690:five_prime_UTR 55.0%
TCTGCATGTCGACAATGGGG+CGG - chr4_4:44637427-44637446 Msa0682690:five_prime_UTR 55.0%
CGTACGAGCAAGCCATTGCA+TGG - chr4_4:44637457-44637476 Msa0682690:five_prime_UTR 55.0%
GGTCCAGATGCCTGGGATGA+AGG - chr4_4:44633646-44633665 Msa0682690:intron 60.0%
TTCTCTTGGCCAGCCTGGTC+CGG - chr4_4:44634053-44634072 Msa0682690:CDS 60.0%
! AGCCTGGTCCGGATTCGGTT+GGG - chr4_4:44634064-44634083 Msa0682690:CDS 60.0%
ATCCCAACCGAATCCGGACC+AGG + chr4_4:44634069-44634088 None:intergenic 60.0%
TAGCTCCTGCCCGGGATTTC+TGG - chr4_4:44634490-44634509 Msa0682690:intron 60.0%
AGAGTCCAGAAATCCCGGGC+AGG + chr4_4:44634498-44634517 None:intergenic 60.0%
!! TCCCTGTCTGGTTCTGGCAC+TGG - chr4_4:44634654-44634673 Msa0682690:intron 60.0%
GCCAGTGCCAGAACCAGACA+GGG + chr4_4:44634658-44634677 None:intergenic 60.0%
ACTGAACTGTGACGGCGCTG+AGG - chr4_4:44635322-44635341 Msa0682690:CDS 60.0%
GCACTGCCGTGAGTTGTCGT+TGG + chr4_4:44636556-44636575 None:intergenic 60.0%
CATGGCAACCCTCTGCACAG+AGG + chr4_4:44636701-44636720 None:intergenic 60.0%
CTCTGTGCAGAGGGTTGCCA+TGG - chr4_4:44636699-44636718 Msa0682690:CDS 60.0%
GCCATGGCCATTTCTCCGTC+CGG - chr4_4:44636715-44636734 Msa0682690:CDS 60.0%
ACCGGACGGAGAAATGGCCA+TGG + chr4_4:44636719-44636738 None:intergenic 60.0%
GTCGACATGCAGATCCCAGC+TGG + chr4_4:44637420-44637439 None:intergenic 60.0%
TGGCCAGCCTGGTCCGGATT+CGG - chr4_4:44634059-44634078 Msa0682690:CDS 65.0%
CAACCGAATCCGGACCAGGC+TGG + chr4_4:44634065-44634084 None:intergenic 65.0%
! CAGCCTGGTCCGGATTCGGT+TGG - chr4_4:44634063-44634082 Msa0682690:CDS 65.0%
GGAGTGGCAGCTCGAGCTTG+CGG - chr4_4:44634114-44634133 Msa0682690:intron 65.0%
CAACGACGCTAGCTCCTGCC+CGG - chr4_4:44634481-44634500 Msa0682690:intron 65.0%
AACGACGCTAGCTCCTGCCC+GGG - chr4_4:44634482-44634501 Msa0682690:intron 65.0%
GGCCAGTGCCAGAACCAGAC+AGG + chr4_4:44634659-44634678 None:intergenic 65.0%
CGGGCAGGAGCTAGCGTCGT+TGG + chr4_4:44634483-44634502 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 44631806 44637840 44631806 ID=Msa0682690;Name=Msa0682690
chr4_4 mRNA 44631806 44637840 44631806 ID=Msa0682690-mRNA-1;Parent=Msa0682690;Name=Msa0682690-mRNA-1;_AED=0.13;_eAED=0.13;_QI=703|0.72|0.68|1|0.88|0.84|19|289|807
chr4_4 exon 44631806 44632244 44631806 ID=Msa0682690-mRNA-1:exon:10779;Parent=Msa0682690-mRNA-1
chr4_4 exon 44632341 44632490 44632341 ID=Msa0682690-mRNA-1:exon:10778;Parent=Msa0682690-mRNA-1
chr4_4 exon 44632624 44632697 44632624 ID=Msa0682690-mRNA-1:exon:10777;Parent=Msa0682690-mRNA-1
chr4_4 exon 44632832 44632937 44632832 ID=Msa0682690-mRNA-1:exon:10776;Parent=Msa0682690-mRNA-1
chr4_4 exon 44632956 44633159 44632956 ID=Msa0682690-mRNA-1:exon:10775;Parent=Msa0682690-mRNA-1
chr4_4 exon 44633318 44633452 44633318 ID=Msa0682690-mRNA-1:exon:10774;Parent=Msa0682690-mRNA-1
chr4_4 exon 44633671 44633751 44633671 ID=Msa0682690-mRNA-1:exon:10773;Parent=Msa0682690-mRNA-1
chr4_4 exon 44633918 44634106 44633918 ID=Msa0682690-mRNA-1:exon:10772;Parent=Msa0682690-mRNA-1
chr4_4 exon 44634189 44634372 44634189 ID=Msa0682690-mRNA-1:exon:10771;Parent=Msa0682690-mRNA-1
chr4_4 exon 44634504 44634610 44634504 ID=Msa0682690-mRNA-1:exon:10770;Parent=Msa0682690-mRNA-1
chr4_4 exon 44634695 44634769 44634695 ID=Msa0682690-mRNA-1:exon:10769;Parent=Msa0682690-mRNA-1
chr4_4 exon 44634849 44635004 44634849 ID=Msa0682690-mRNA-1:exon:10768;Parent=Msa0682690-mRNA-1
chr4_4 exon 44635092 44635175 44635092 ID=Msa0682690-mRNA-1:exon:10767;Parent=Msa0682690-mRNA-1
chr4_4 exon 44635251 44635364 44635251 ID=Msa0682690-mRNA-1:exon:10766;Parent=Msa0682690-mRNA-1
chr4_4 exon 44635485 44635580 44635485 ID=Msa0682690-mRNA-1:exon:10765;Parent=Msa0682690-mRNA-1
chr4_4 exon 44636000 44636069 44636000 ID=Msa0682690-mRNA-1:exon:10764;Parent=Msa0682690-mRNA-1
chr4_4 exon 44636163 44636248 44636163 ID=Msa0682690-mRNA-1:exon:10763;Parent=Msa0682690-mRNA-1
chr4_4 exon 44636676 44636796 44636676 ID=Msa0682690-mRNA-1:exon:10762;Parent=Msa0682690-mRNA-1
chr4_4 exon 44636896 44637840 44636896 ID=Msa0682690-mRNA-1:exon:10761;Parent=Msa0682690-mRNA-1
chr4_4 five_prime_UTR 44637138 44637840 44637138 ID=Msa0682690-mRNA-1:five_prime_utr;Parent=Msa0682690-mRNA-1
chr4_4 CDS 44636896 44637137 44636896 ID=Msa0682690-mRNA-1:cds;Parent=Msa0682690-mRNA-1
chr4_4 CDS 44636676 44636796 44636676 ID=Msa0682690-mRNA-1:cds;Parent=Msa0682690-mRNA-1
chr4_4 CDS 44636163 44636248 44636163 ID=Msa0682690-mRNA-1:cds;Parent=Msa0682690-mRNA-1
chr4_4 CDS 44636000 44636069 44636000 ID=Msa0682690-mRNA-1:cds;Parent=Msa0682690-mRNA-1
chr4_4 CDS 44635485 44635580 44635485 ID=Msa0682690-mRNA-1:cds;Parent=Msa0682690-mRNA-1
chr4_4 CDS 44635251 44635364 44635251 ID=Msa0682690-mRNA-1:cds;Parent=Msa0682690-mRNA-1
chr4_4 CDS 44635092 44635175 44635092 ID=Msa0682690-mRNA-1:cds;Parent=Msa0682690-mRNA-1
chr4_4 CDS 44634849 44635004 44634849 ID=Msa0682690-mRNA-1:cds;Parent=Msa0682690-mRNA-1
chr4_4 CDS 44634695 44634769 44634695 ID=Msa0682690-mRNA-1:cds;Parent=Msa0682690-mRNA-1
chr4_4 CDS 44634504 44634610 44634504 ID=Msa0682690-mRNA-1:cds;Parent=Msa0682690-mRNA-1
chr4_4 CDS 44634189 44634372 44634189 ID=Msa0682690-mRNA-1:cds;Parent=Msa0682690-mRNA-1
chr4_4 CDS 44633918 44634106 44633918 ID=Msa0682690-mRNA-1:cds;Parent=Msa0682690-mRNA-1
chr4_4 CDS 44633671 44633751 44633671 ID=Msa0682690-mRNA-1:cds;Parent=Msa0682690-mRNA-1
chr4_4 CDS 44633318 44633452 44633318 ID=Msa0682690-mRNA-1:cds;Parent=Msa0682690-mRNA-1
chr4_4 CDS 44632956 44633159 44632956 ID=Msa0682690-mRNA-1:cds;Parent=Msa0682690-mRNA-1
chr4_4 CDS 44632832 44632937 44632832 ID=Msa0682690-mRNA-1:cds;Parent=Msa0682690-mRNA-1
chr4_4 CDS 44632624 44632697 44632624 ID=Msa0682690-mRNA-1:cds;Parent=Msa0682690-mRNA-1
chr4_4 CDS 44632341 44632490 44632341 ID=Msa0682690-mRNA-1:cds;Parent=Msa0682690-mRNA-1
chr4_4 CDS 44632095 44632244 44632095 ID=Msa0682690-mRNA-1:cds;Parent=Msa0682690-mRNA-1
chr4_4 three_prime_UTR 44631806 44632094 44631806 ID=Msa0682690-mRNA-1:three_prime_utr;Parent=Msa0682690-mRNA-1
Gene Sequence

>Msa0682690

ATGGCTATGGCTATGGCTGTGGCTCATCATAGAGAAACTAGTAGCAGTGGTGGAAGCATTGATAAGCATCTAGATTCAGGGAAATATGTTAGGTACACTACTGAACAAGTTGAAGCATTGGAAAGGGTTTATGCTGAGTGTCCTAAGCCTAGTTCCATGAGAAGACAACAATTGATTCGTGAGTGTCCTATTCTTTCCAACATTGAACCTAAACAGATCAAGGTTTGGTTCCAAAATCGAAGGTGTAGAGAGAAGCAAAGAAAAGAGGCTTCAAGGCTTCAAACTGTGAATAGGAAATTGTCTGCAATGAACAAGTTGTTGATGGAGGAAAATGATAGGTTGCAGAAACAAGTGTCACAGCTTCCATCAGCAGCAAATACTGATGCAAGTTGTGATTCGGTAGTTACTACTCCTCAGAATTCTAAGAGAGATGCTACTAACCCTGCTGGACTCCTATCAATTGCGGAGGAGACTTTGACAGAGTTCCTTTCAAAGGCTACAGGAACTGCTGTTGATTGGCCTGGTCCGGATTCGGTTGGGATCTTTGCGATTTCACAAAGTTGTAGTGGAGTGGCAGCTCGAGCTTGCGGTCTTGTTAGTTTAGAACCTACAAAGATTGCAGAGATCCTTAAAGATCGTTTATCTTGGTTTCGCGAGTGTCGGAACCTAGAAGTTTTCACAATGTTTCCTGCCGGAAATGGAGGAACCATTGAGCTTATTTACACACAGACATATGCTCCAACGACGCTAGCTCCTGCCCGGGATTTCTGGACTCTTAGATACACTACAACTTTGGACAATGGCAGTCTTGTGGTTTGTGAAAGGTCCCTGTCTGGTTCTGGCACTGGCCCTAATTCAACTGCTGCTGCTCAGTTTGTAAGAGCTGAAATGCTCCCGAGTGGCTACTTGATTCGACCATGTGATGGTGGAGGTTCAATCATCCACATTGTAGACCACTTAAATCTTGAACCGTGGAGTGTGCCAGAAGTACTACGACCACTTTATGAATCACCAAAGGTGGTGGCTCAAAAAATGACCATTGCAGCACTTCGATATATTAGGCAAATAGCTCAGGAATCGAGTGGTGAAGTGGTATACGGATTAGGTAGACAGCCTGCTGTTTTGCGAACATTCAGCCAAAGATTGAGCAGAGGCTTCAATGACGCTGTAAATGGATTCAGTGATGATGGTTGGTCTATACTGAACTGTGACGGCGCTGAGGATGTAATTATTGCTGTTAATTCAACCAAGAATCTAAGTAGCTCTTCTAATCCAGCAAGTTCCCTCACATTGCTTGGAGGAATTCTCTGTGCAAAAGCTTCTATGTTGCTACAAAACGTTCCTCCAGCGGTTTTGGTTCGCTTTCTAAGGGAACACCGCTCAGAATGGGCTGATTTCAATGTTGATGCATACTCCGCTGCATCACTGAAAGCAGGAACCTATGCCTATCCAGGGATGAGGCCTACAAGATTCACTGGCAATCAAATAATCATGCCTCTTGGGAACACAATTGAACATGAAGAGATGCTTGAAGTTATTAGGCTTGAAGGCCACTCTCTTGCTCAAGAAGATGCTTTTGTTTCTAGGGATATTCACCTGTTACAGATATGTAGTGGGACTGATGAGAACGCTGTTGGGACTTGTTCTGAGCTCATATTTGCTCCAATTGATGAAATGTTCCCAGATGATGCTCCATTGGTGCCTTCTGGTTTCCGCATCATCCCATTAGATTCAAAACCAGGGGATAAGAAGGATGCCGTGAATACAAACCGGACACTGGATTTGACGTCAGGTCTTGAAGTGAACCCAACGACAACTCACGGCAGTGCAGATTCATCATCAAGCCAAAACACCCGATCAGTGTTGACTATTGCCTTTCAGTTCCCTTTTGACAGCACTATGCAAGATAATGTTGTAATCATGGCACGTCAATATGTTCGTAGTAGGGTTGCCATGGCCATTTCTCCGTCCGGTATAAACCCAGCTGTTGGTGCCAAACTTTCTCCTGGTTCTCCAGAAGCAGTTACACTAGCTCAATGGATCTGCCAGAATTCTCTTGTTGGTGACTTGATGCTGAAACAACTGTGGCATCACCAGGACGCGATTTTATGCTGTTCATTGAAGTCGCAGCCGGTGTTTGTATTTGCAAATCAAGCTGGCCTTGACATGTTGGAAACAACTCTAGTAGCTTTACAAGACATCACATTGGATAAAATATTTGACGAGTCTGGTCGCAAGGCGTTGTGTGCTGATTTTGCCAAGTTAATGCAACAGGGGTTTGCTTATCTGCCAGCTGGGATCTGCATGTCGACAATGGGGCGGCATGTTTCGTACGAGCAAGCCATTGCATGGAAAGTGCTAACACCAGAAGATAACACTGTTCATTGCTTAGCTTTCTCTTTCATAAATTGGTCATTTGTATGA
Protein sequence

>Msa0682690

MAMAMAVAHHRETSSSGGSIDKHLDSGKYVRYTTEQVEALERVYAECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSQLPSAANTDASCDSVVTTPQNSKRDATNPAGLLSIAEETLTEFLSKATGTAVDWPGPDSVGIFAISQSCSGVAARACGLVSLEPTKIAEILKDRLSWFRECRNLEVFTMFPAGNGGTIELIYTQTYAPTTLAPARDFWTLRYTTTLDNGSLVVCERSLSGSGTGPNSTAAAQFVRAEMLPSGYLIRPCDGGGSIIHIVDHLNLEPWSVPEVLRPLYESPKVVAQKMTIAALRYIRQIAQESSGEVVYGLGRQPAVLRTFSQRLSRGFNDAVNGFSDDGWSILNCDGAEDVIIAVNSTKNLSSSSNPASSLTLLGGILCAKASMLLQNVPPAVLVRFLREHRSEWADFNVDAYSAASLKAGTYAYPGMRPTRFTGNQIIMPLGNTIEHEEMLEVIRLEGHSLAQEDAFVSRDIHLLQICSGTDENAVGTCSELIFAPIDEMFPDDAPLVPSGFRIIPLDSKPGDKKDAVNTNRTLDLTSGLEVNPTTTHGSADSSSSQNTRSVLTIAFQFPFDSTMQDNVVIMARQYVRSRVAMAISPSGINPAVGAKLSPGSPEAVTLAQWICQNSLVGDLMLKQLWHHQDAILCCSLKSQPVFVFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQGFAYLPAGICMSTMGRHVSYEQAIAWKVLTPEDNTVHCLAFSFINWSFV*