AlfalfaGEDB | Msa0683010

M. sativa cultivar zhongmu-4 / Msa0683010

KEGG: -
GO: GO:0001708 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009987 GO:0010050 GO:0010158 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045165 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02362.24

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0683010	XP_024636758.1	94.451	793	21	1	1	770	1	793	0.0	1548

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0683010	sp\|Q9ZTX9\|ARFD_ARATH	59.840	752	243	12	52	770	63	788	0.0	822

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0683010	G7JQF5	94.325	793	21	2	1	770	1	792	0.0	1541

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0683010	TF	B3-ARF

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0683010	Msa0683020	0.844230	8.600021e-59	-8.615850e-47

Showing 1 to 1 of 1 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0683010	MtrunA17_Chr4g0029671	94.325	793	21	2	1	770	1	792	0.0	1541
Msa0683010	MtrunA17_Chr2g0326281	69.028	833	185	14	1	770	1	823	0.0	1075
Msa0683010	MtrunA17_Chr2g0282961	56.150	374	156	4	46	419	45	410	1.79e-138	422
Msa0683010	MtrunA17_Chr4g0046371	49.378	482	206	10	49	505	33	501	3.43e-138	424
Msa0683010	MtrunA17_Chr8g0385791	49.751	402	190	3	38	438	43	433	4.27e-133	415
Msa0683010	MtrunA17_Chr8g0385791	49.550	111	54	1	636	744	705	815	9.32e-30	126
Msa0683010	MtrunA17_Chr2g0276781	50.541	370	170	3	52	420	21	378	7.86e-124	385
Msa0683010	MtrunA17_Chr2g0276781	50.758	132	62	2	631	759	537	668	9.99e-32	132
Msa0683010	MtrunA17_Chr2g0285461	52.033	369	155	8	54	415	23	376	3.80e-111	359
Msa0683010	MtrunA17_Chr2g0285461	43.617	94	51	2	637	729	771	863	1.92e-18	90.5

Showing 1 to 10 of 53 entries

Previous1 2 3 4 5 6Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0683010	AT5G60450.2	59.788	756	245	12	48	770	35	764	0.0	825
Msa0683010	AT5G60450.1	59.840	752	243	12	52	770	63	788	0.0	822
Msa0683010	AT2G33860.1	50.106	473	189	10	53	512	53	491	2.00e-141	429
Msa0683010	AT5G62000.2	52.000	375	168	3	52	425	59	422	1.07e-131	412
Msa0683010	AT5G62000.2	53.774	106	49	0	630	735	722	827	9.93e-30	127
Msa0683010	AT5G62000.5	52.000	375	168	3	52	425	59	422	1.07e-131	412
Msa0683010	AT5G62000.5	53.774	106	49	0	630	735	722	827	9.93e-30	127
Msa0683010	AT5G62000.3	52.000	375	168	3	52	425	59	422	1.07e-131	412
Msa0683010	AT5G62000.3	53.774	106	49	0	630	735	722	827	9.93e-30	127
Msa0683010	AT5G62000.1	52.000	375	168	3	52	425	59	422	1.07e-131	412

Showing 1 to 10 of 86 entries

Previous1 2 3 4 5…9Next

Find 229 sgRNAs with CRISPR-Local

Find 463 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATGCAGATTGAAAACT+AGG	0.485809	4_4:+45353682	None:intergenic
AAAGAAGTTGAGGAATTAGA+AGG	0.393061	4_4:-45357718	Msa0683010:CDS
AAAGGCAAGTAAAGCCAATG+TGG	0.622004	4_4:+45359494	None:intergenic
AAATTTCGCCATATTTATAG+AGG	0.488170	4_4:-45357102	Msa0683010:intron
AACACACCATCGATAGTGGC+AGG	0.510410	4_4:-45353574	Msa0683010:CDS
AACCAAAAGAATCTTGTTTC+TGG	0.233692	4_4:-45356950	Msa0683010:CDS
AACCTCATCATTCTCCTTGT+TGG	0.359424	4_4:+45358494	None:intergenic
AACCTGGCATCAACTGGAAT+AGG	0.466535	4_4:-45353868	Msa0683010:CDS
AACCTTGTCCCTATACTCAC+TGG	0.465299	4_4:+45356100	None:intergenic
AACTTTCCAAGGGTCTTGCA+AGG	0.597137	4_4:-45353775	Msa0683010:CDS

Showing 1 to 10 of 229 entries

Previous1 2 3 4 5…23Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ATTTGTAGGTACATAGAAGA+GGG	+	chr4_4:45352070-45352089	None:intergenic	30.0%
ATTCCATTATCTCCATTTGT+AGG	+	chr4_4:45352084-45352103	None:intergenic	30.0%
TACACTTTATAGAATCCACT+TGG	-	chr4_4:45352273-45352292	Msa0683010:three_prime_UTR	30.0%
TCTAAACAATGAAGTGATTG+AGG	-	chr4_4:45352407-45352426	Msa0683010:CDS	30.0%
AGATAAGAAGAAGAAACAAG+TGG	+	chr4_4:45352534-45352553	None:intergenic	30.0%
CTTCTTCTTATCTTGAACTA+TGG	-	chr4_4:45352541-45352560	Msa0683010:CDS	30.0%
GGTATCTCCAATTGTTTAAA+AGG	+	chr4_4:45352663-45352682	None:intergenic	30.0%
GATTAACTACTTTCAGTAGA+TGG	-	chr4_4:45353181-45353200	Msa0683010:CDS	30.0%
TGAAGTTCAAAATCCTAGTT+AGG	-	chr4_4:45353412-45353431	Msa0683010:CDS	30.0%
GATTAACTACATTCAACTGA+TGG	+	chr4_4:45353488-45353507	None:intergenic	30.0%

Showing 1 to 10 of 463 entries

Previous1 2 3 4 5…47Next

Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	45352003	45359517	45352003	ID=Msa0683010;Name=Msa0683010
chr4_4	mRNA	45352003	45359517	45352003	ID=Msa0683010-mRNA-1;Parent=Msa0683010;Name=Msa0683010-mRNA-1;_AED=0.09;_eAED=0.09;_QI=393\|0.83\|0.84\|1\|1\|1\|13\|400\|770
chr4_4	exon	45352003	45352589	45352003	ID=Msa0683010-mRNA-1:exon:10986;Parent=Msa0683010-mRNA-1
chr4_4	exon	45353061	45353251	45353061	ID=Msa0683010-mRNA-1:exon:10985;Parent=Msa0683010-mRNA-1
chr4_4	exon	45353345	45353926	45353345	ID=Msa0683010-mRNA-1:exon:10984;Parent=Msa0683010-mRNA-1
chr4_4	exon	45355196	45355245	45355196	ID=Msa0683010-mRNA-1:exon:10983;Parent=Msa0683010-mRNA-1
chr4_4	exon	45355500	45355677	45355500	ID=Msa0683010-mRNA-1:exon:10982;Parent=Msa0683010-mRNA-1
chr4_4	exon	45355896	45355974	45355896	ID=Msa0683010-mRNA-1:exon:10981;Parent=Msa0683010-mRNA-1
chr4_4	exon	45356061	45356180	45356061	ID=Msa0683010-mRNA-1:exon:10980;Parent=Msa0683010-mRNA-1
chr4_4	exon	45356319	45356483	45356319	ID=Msa0683010-mRNA-1:exon:10979;Parent=Msa0683010-mRNA-1
chr4_4	exon	45356929	45357019	45356929	ID=Msa0683010-mRNA-1:exon:10978;Parent=Msa0683010-mRNA-1
chr4_4	exon	45357103	45357187	45357103	ID=Msa0683010-mRNA-1:exon:10977;Parent=Msa0683010-mRNA-1
chr4_4	exon	45357579	45357764	45357579	ID=Msa0683010-mRNA-1:exon:10976;Parent=Msa0683010-mRNA-1
chr4_4	exon	45358461	45358517	45358461	ID=Msa0683010-mRNA-1:exon:10975;Parent=Msa0683010-mRNA-1
chr4_4	exon	45358783	45359517	45358783	ID=Msa0683010-mRNA-1:exon:10974;Parent=Msa0683010-mRNA-1
chr4_4	five_prime_UTR	45359125	45359517	45359125	ID=Msa0683010-mRNA-1:five_prime_utr;Parent=Msa0683010-mRNA-1
chr4_4	CDS	45358783	45359124	45358783	ID=Msa0683010-mRNA-1:cds;Parent=Msa0683010-mRNA-1
chr4_4	CDS	45358461	45358517	45358461	ID=Msa0683010-mRNA-1:cds;Parent=Msa0683010-mRNA-1
chr4_4	CDS	45357579	45357764	45357579	ID=Msa0683010-mRNA-1:cds;Parent=Msa0683010-mRNA-1
chr4_4	CDS	45357103	45357187	45357103	ID=Msa0683010-mRNA-1:cds;Parent=Msa0683010-mRNA-1
chr4_4	CDS	45356929	45357019	45356929	ID=Msa0683010-mRNA-1:cds;Parent=Msa0683010-mRNA-1
chr4_4	CDS	45356319	45356483	45356319	ID=Msa0683010-mRNA-1:cds;Parent=Msa0683010-mRNA-1
chr4_4	CDS	45356061	45356180	45356061	ID=Msa0683010-mRNA-1:cds;Parent=Msa0683010-mRNA-1
chr4_4	CDS	45355896	45355974	45355896	ID=Msa0683010-mRNA-1:cds;Parent=Msa0683010-mRNA-1
chr4_4	CDS	45355500	45355677	45355500	ID=Msa0683010-mRNA-1:cds;Parent=Msa0683010-mRNA-1
chr4_4	CDS	45355196	45355245	45355196	ID=Msa0683010-mRNA-1:cds;Parent=Msa0683010-mRNA-1
chr4_4	CDS	45353345	45353926	45353345	ID=Msa0683010-mRNA-1:cds;Parent=Msa0683010-mRNA-1
chr4_4	CDS	45353061	45353251	45353061	ID=Msa0683010-mRNA-1:cds;Parent=Msa0683010-mRNA-1
chr4_4	CDS	45352403	45352589	45352403	ID=Msa0683010-mRNA-1:cds;Parent=Msa0683010-mRNA-1
chr4_4	three_prime_UTR	45352003	45352402	45352003	ID=Msa0683010-mRNA-1:three_prime_utr;Parent=Msa0683010-mRNA-1

Gene Sequence

>Msa0683010

ATGGAAATTGATCTAAACAATGAAGTGATTGAGGTTGAGAAGAATGCATTGTGCCATAAGGAATGTGAAAAAGGTTTTTGTTTCTGTGTTTCTTGTTTGTCTCCTTCAACTTGTTCATCTTCAAGTTCAACTTCACCACTTGTTTCTTCTTCTTATCTTGAACTATGGCATGCTTGTGCTGGCCCTCTTACTTCACTTCCTAAGAAAGGAAATGTTGTGGTGTATTTTCCACAAGGTCATTTAGAACAATTTGCTTCTTTCTCTCCTTTTAAACAATTGGAGATACCAAACTATGATCTTCAGCCACAGATCTTCTGCAGGGTTGTCAATGTCCAGCTACTTGCCAACAAGGAGAATGATGAGGTTTATACACAAGTTACTCTGCTACCTCAGGCTGAGTTGGCAGGGATGCATATGGAAGGAAAAGAAGTTGAGGAATTAGAAGGAGATGAAGAGGGAGATGGAGGGTCACCTACAAAATCAACCCCTCACATGTTCTGCAAGACACTAACTGTCTCTGATACCAGCACTCATGGTGGATTCTCCGTGCCTCGTAGAGCTGCTGAAGATTGTTTTCCTCCATTGGATTATAAGCTGCAGAGACCCTCTCAAGAGCTTGTTGCCAAAGACCTGCATGGTGTGGAGTGGAAATTTCGCCATATTTATAGAGGTCAGCCAAGGCGGCATCTGCTCACAACTGGCTGGAGCATTTTTGTGAACCAAAAGAATCTTGTTTCTGGTGATGCTGTGCTCTTTCTAAGGGGTGAAAATGGAGAGCTGAGATTGGGAATCAGAAGAGCTGTTAGACCTAGAAATGGTCTTCCTGAATCAATTGTTGGTAATCAGAATTGTTATCCCAATTTCCTTTCATCTGTTGCAAATGCTATATCCACCAAAAGCATGTTTCATGTTTTCTATAGTCCAAGAGCAAGTCATGCAGAGTTTGTTGTTCCGTACCAAAAATATGTTAAAAGCATCAAGAATCCAGTGAGTATAGGGACAAGGTTCAAAATGAGAATTGAAATGGATGAATCACCAGAAAGAAGGTGTAGTAGTGGTATGTTGATTGGAATAAATGATTTGGATCCCTATAGATGGCCTAAATCAAAATGGAGGTGCTTGATGGTAAGATGGGATGAGGATACTGAGACTAATCATCAAGACCGAGTATCGCCATGGGAGATCGATCTTTCTTCTCCTCAGCCTCCCCTAAGCATTCAGTCTTCCCCAAGACTGAAGAAACCGCGGACCGGTCTACTGGTTACCTCACCCAATCACCTCATCACTGGTATGAATCCTAATGCAGGAATCAGTGGAATGATGGGCTTTGAGGAGTCAGTAAGATCACCAAAGCCAGGTTTTGAGTTGAGCACTTCAAGTCATCATCAAAACCTGGCATCAACTGGAATAGGAAAAGTAGTTACATCCTCTGAGCTTATGAGTGTTAATCCTTTCAGTTATGCAGGCTTTATGGAAAGTAACAACTTTCCAAGGGTCTTGCAAGGTCAAGAAATATGTAAACTGAAATCCCTTTCAGGAAAAGCTGATTTCAACATCGGAGCTTGGGGAACCAAGCCTAGTTTTCAATCTGCATGTTTTCCTTACAGAGATATTGACAAAGCTAATCAAGCTAATATTTTTAGCTCAAAACACACCAATTTCATGAGTGATAATGTCCCGTTTAACACACCATCGATAGTGGCAGGGAACATTAGAAAAGAAGTTGGAAGATCTGGATCTAATCTCCTTCCAAATGAGCATAAGCTCCAGGACAATGTTTCTGCTTCTGCTTCATTAGGGGATACTAATATTAAAGTTCCAAATGATAACAATGTCAAGGGAAATGCAAATTCCTGCAAACTATTCGGCTTTCCTTTGTCTGGCGAACCTAGTAGTCAAAATTTACAGAACACTTCAAAAAGGAGTTGCACAAAGGTTCACAAGCAAGGAAGCTTAGTTGGAAGAGCCATTGATCTCTCTAGGTTGAGCGGCTACAATGATCTTCTGAGTGAACTGGAGAAACTATTTGGCATGGAAGGACTTCTTGGAGATTCTGATAAGGGATGGAGGATCCTCTACACTGACAGTGAGAATGACATAATGGTTGTGGGGGATGATCCATGGCATGAGTTTTGTGATGTTGTGTCTAAAATCCATATATATACCAAAGAAGAAGTGGAGAAGATGACATTTGGGATGATGACCAATGATGATACTCATAGCTGTTTGGATCAGGCACCAGTTATTATTGAACCTTCAAAGTCTTCCTCAGTTGGTCAGCCAGATTATTCTCCAACAGTAGTTAGAGTCTAA

Protein sequence

>Msa0683010

MEIDLNNEVIEVEKNALCHKECEKGFCFCVSCLSPSTCSSSSSTSPLVSSSYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQFASFSPFKQLEIPNYDLQPQIFCRVVNVQLLANKENDEVYTQVTLLPQAELAGMHMEGKEVEELEGDEEGDGGSPTKSTPHMFCKTLTVSDTSTHGGFSVPRRAAEDCFPPLDYKLQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVNQKNLVSGDAVLFLRGENGELRLGIRRAVRPRNGLPESIVGNQNCYPNFLSSVANAISTKSMFHVFYSPRASHAEFVVPYQKYVKSIKNPVSIGTRFKMRIEMDESPERRCSSGMLIGINDLDPYRWPKSKWRCLMVRWDEDTETNHQDRVSPWEIDLSSPQPPLSIQSSPRLKKPRTGLLVTSPNHLITGMNPNAGISGMMGFEESVRSPKPGFELSTSSHHQNLASTGIGKVVTSSELMSVNPFSYAGFMESNNFPRVLQGQEICKLKSLSGKADFNIGAWGTKPSFQSACFPYRDIDKANQANIFSSKHTNFMSDNVPFNTPSIVAGNIRKEVGRSGSNLLPNEHKLQDNVSASASLGDTNIKVPNDNNVKGNANSCKLFGFPLSGEPSSQNLQNTSKRSCTKVHKQGSLVGRAIDLSRLSGYNDLLSELEKLFGMEGLLGDSDKGWRILYTDSENDIMVVGDDPWHEFCDVVSKIHIYTKEEVEKMTFGMMTNDDTHSCLDQAPVIIEPSKSSSVGQPDYSPTVVRV*