AlfalfaGEDB | Msa0683020

M. sativa cultivar zhongmu-4 / Msa0683020

KEGG: -
GO: GO:0001708 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009987 GO:0010050 GO:0010158 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045165 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0683020	XP_024636758.1	97.604	626	15	0	1	626	1	626	0.0	1281

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0683020	sp\|Q9ZTX9\|ARFD_ARATH	63.437	547	171	11	52	593	63	585	0.0	658

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0683020	G7JQF5	97.444	626	15	1	1	626	1	625	0.0	1273

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TFs/TRs:

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Gene ID	Type	Classification
Msa0683020	TF	B3-ARF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0683010	Msa0683020	0.844230	8.600021e-59	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0683020	MtrunA17_Chr4g0029671	97.444	626	15	1	1	626	1	625	0.0	1273
Msa0683020	MtrunA17_Chr2g0326281	67.784	686	172	11	1	647	1	676	0.0	867
Msa0683020	MtrunA17_Chr4g0046371	50.103	487	218	9	49	528	33	501	6.39e-146	441
Msa0683020	MtrunA17_Chr2g0282961	48.235	510	223	12	46	533	45	535	1.65e-144	434
Msa0683020	MtrunA17_Chr8g0385791	48.712	427	197	5	38	459	43	452	5.00e-136	419
Msa0683020	MtrunA17_Chr2g0276781	50.541	370	170	3	52	420	21	378	3.41e-125	386
Msa0683020	MtrunA17_Chr2g0285461	44.583	480	224	11	54	520	23	473	1.18e-112	360
Msa0683020	MtrunA17_Chr5g0433301	50.674	371	157	6	54	415	24	377	8.48e-112	356
Msa0683020	MtrunA17_Chr8g0346711	49.185	368	169	9	52	416	27	379	2.74e-111	350
Msa0683020	MtrunA17_Chr3g0109391	50.943	371	156	6	54	415	26	379	5.41e-111	354

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0683020	AT5G60450.2	63.339	551	173	11	48	593	35	561	0.0	660
Msa0683020	AT5G60450.1	63.437	547	171	11	52	593	63	585	0.0	658
Msa0683020	AT2G33860.1	49.795	488	191	10	53	535	53	491	8.04e-146	437
Msa0683020	AT5G62000.2	49.400	417	177	6	52	457	59	452	2.85e-133	413
Msa0683020	AT5G62000.5	49.400	417	177	6	52	457	59	452	2.85e-133	413
Msa0683020	AT5G62000.3	49.400	417	177	6	52	457	59	452	2.85e-133	413
Msa0683020	AT5G62000.1	49.400	417	177	6	52	457	59	452	2.85e-133	413
Msa0683020	AT5G62000.4	49.400	417	177	6	52	457	59	452	4.04e-133	412
Msa0683020	AT1G59750.4	48.656	372	164	5	54	416	22	375	2.18e-118	368
Msa0683020	AT1G59750.2	48.656	372	164	5	54	416	22	375	2.62e-118	368

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Find 238 sgRNAs with CRISPR-Local

Find 418 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATGCAGATTGAAAACT+AGG	0.485809	4_4:-45383949	None:intergenic
AAAGAAGTTGAGGAATTAGA+AGG	0.393061	4_4:+45381113	Msa0683020:CDS
AAAGGAGTTGCACAAAGGTG+AGG	0.577607	4_4:+45384291	Msa0683020:CDS
AAAGGCAAGTAAAGCCAATG+TGG	0.622004	4_4:-45379339	None:intergenic
AAATTTCGCCATATTTATAG+AGG	0.488170	4_4:+45381729	Msa0683020:CDS
AACACACCATCGATAGTGGC+AGG	0.510410	4_4:+45384057	Msa0683020:CDS
AACCAAAAGAATCTTGTTTC+TGG	0.233692	4_4:+45381881	Msa0683020:CDS
AACCTCATCATTCTCCTTGT+TGG	0.359424	4_4:-45380338	None:intergenic
AACCTGGCATCAACTGGAAT+AGG	0.466535	4_4:+45383763	Msa0683020:CDS
AACCTTGTCCCTATACTCAC+TGG	0.465299	4_4:-45382731	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTTGTAGGTACATAGAAGA+GGG	-	chr4_4:45379405-45379424	None:intergenic	30.0%
ATTCCATTATCTCCATTTGT+AGG	-	chr4_4:45379419-45379438	None:intergenic	30.0%
AATTCAAAAAGTTGAGGCTA+TGG	-	chr4_4:45379589-45379608	None:intergenic	30.0%
TACACTTTATAGAATCCACT+TGG	+	chr4_4:45379608-45379627	Msa0683020:five_prime_UTR	30.0%
TCTAAACAATGAAGTGATTG+AGG	+	chr4_4:45379742-45379761	Msa0683020:CDS	30.0%
AGATAAGAAGAAGAAACAAG+TGG	-	chr4_4:45379869-45379888	None:intergenic	30.0%
CTTCTTCTTATCTTGAACTA+TGG	+	chr4_4:45379876-45379895	Msa0683020:CDS	30.0%
GGTATCTCCAATTGTTTAAA+AGG	-	chr4_4:45379998-45380017	None:intergenic	30.0%
GATTAACTACTTTCAGTAGA+TGG	+	chr4_4:45380514-45380533	Msa0683020:intron	30.0%
TGAAGTTCAAAATCCTAGTT+AGG	+	chr4_4:45380745-45380764	Msa0683020:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	45379338	45385648	45379338	ID=Msa0683020;Name=Msa0683020
chr4_4	mRNA	45379338	45385648	45379338	ID=Msa0683020-mRNA-1;Parent=Msa0683020;Name=Msa0683020-mRNA-1;_AED=0.06;_eAED=0.06;_QI=393\|0.9\|0.90\|1\|1\|0.90\|11\|867\|668
chr4_4	exon	45379338	45380072	45379338	ID=Msa0683020-mRNA-1:exon:10943;Parent=Msa0683020-mRNA-1
chr4_4	exon	45380337	45380393	45380337	ID=Msa0683020-mRNA-1:exon:10944;Parent=Msa0683020-mRNA-1
chr4_4	exon	45381089	45381274	45381089	ID=Msa0683020-mRNA-1:exon:10945;Parent=Msa0683020-mRNA-1
chr4_4	exon	45381666	45381750	45381666	ID=Msa0683020-mRNA-1:exon:10946;Parent=Msa0683020-mRNA-1
chr4_4	exon	45381834	45381924	45381834	ID=Msa0683020-mRNA-1:exon:10947;Parent=Msa0683020-mRNA-1
chr4_4	exon	45382370	45382534	45382370	ID=Msa0683020-mRNA-1:exon:10948;Parent=Msa0683020-mRNA-1
chr4_4	exon	45382673	45382792	45382673	ID=Msa0683020-mRNA-1:exon:10949;Parent=Msa0683020-mRNA-1
chr4_4	exon	45382879	45382957	45382879	ID=Msa0683020-mRNA-1:exon:10950;Parent=Msa0683020-mRNA-1
chr4_4	exon	45383176	45383353	45383176	ID=Msa0683020-mRNA-1:exon:10951;Parent=Msa0683020-mRNA-1
chr4_4	exon	45383608	45384590	45383608	ID=Msa0683020-mRNA-1:exon:10952;Parent=Msa0683020-mRNA-1
chr4_4	exon	45385061	45385648	45385061	ID=Msa0683020-mRNA-1:exon:10953;Parent=Msa0683020-mRNA-1
chr4_4	five_prime_UTR	45379338	45379730	45379338	ID=Msa0683020-mRNA-1:five_prime_utr;Parent=Msa0683020-mRNA-1
chr4_4	CDS	45379731	45380072	45379731	ID=Msa0683020-mRNA-1:cds;Parent=Msa0683020-mRNA-1
chr4_4	CDS	45380337	45380393	45380337	ID=Msa0683020-mRNA-1:cds;Parent=Msa0683020-mRNA-1
chr4_4	CDS	45381089	45381274	45381089	ID=Msa0683020-mRNA-1:cds;Parent=Msa0683020-mRNA-1
chr4_4	CDS	45381666	45381750	45381666	ID=Msa0683020-mRNA-1:cds;Parent=Msa0683020-mRNA-1
chr4_4	CDS	45381834	45381924	45381834	ID=Msa0683020-mRNA-1:cds;Parent=Msa0683020-mRNA-1
chr4_4	CDS	45382370	45382534	45382370	ID=Msa0683020-mRNA-1:cds;Parent=Msa0683020-mRNA-1
chr4_4	CDS	45382673	45382792	45382673	ID=Msa0683020-mRNA-1:cds;Parent=Msa0683020-mRNA-1
chr4_4	CDS	45382879	45382957	45382879	ID=Msa0683020-mRNA-1:cds;Parent=Msa0683020-mRNA-1
chr4_4	CDS	45383176	45383353	45383176	ID=Msa0683020-mRNA-1:cds;Parent=Msa0683020-mRNA-1
chr4_4	CDS	45383608	45384311	45383608	ID=Msa0683020-mRNA-1:cds;Parent=Msa0683020-mRNA-1
chr4_4	three_prime_UTR	45384312	45384590	45384312	ID=Msa0683020-mRNA-1:three_prime_utr;Parent=Msa0683020-mRNA-1
chr4_4	three_prime_UTR	45385061	45385648	45385061	ID=Msa0683020-mRNA-1:three_prime_utr;Parent=Msa0683020-mRNA-1

Gene Sequence

>Msa0683020

ATGGAAATTGATCTAAACAATGAAGTGATTGAGGTTGAGAAGAATGCATTGTGCCATAAGGAATGTGAAAAAGGTTTTTGTTTCTGTGTTTCTTGTTTGTCTCCTTCAACTTGTTCATCTTCAAGTTCAACTTCACCACTTGTTTCTTCTTCTTATCTTGAACTATGGCATGCTTGTGCTGGCCCTCTTACTTCACTTCCTAAGAAAGGAAATGTTGTGGTGTATTTTCCACAAGGTCATTTAGAACAATTTGCTTCTTTCTCTCCTTTTAAACAATTGGAGATACCAAACTATGATCTTCAGCCACAGATCTTCTGCAGGGTTGTCAATGTCCAGCTACTTGCCAACAAGGAGAATGATGAGGTTTATACACAAGTTACTCTGCTACCTCAGGCTGAGTTGGCAGGGATGCATATGGAAGGAAAAGAAGTTGAGGAATTAGAAGGAGATGAAGAGGGAGATGGAGGGTCACCTACAAAATCAACCCCTCACATGTTCTGCAAGACACTAACTGTCTCTGATACCAGCACTCATGGTGGATTCTCCGTGCCTCGTAGAGCTGCTGAAGATTGTTTTCCTCCATTGGATTATAAGCTGCAGAGACCCTCTCAAGAGCTTGTTGCCAAAGACCTGCATGGTGTGGAGTGGAAATTTCGCCATATTTATAGAGGTCAGCCAAGGCGGCATCTGCTCACAACTGGCTGGAGCATTTTTGTGAACCAAAAGAATCTTGTTTCTGGTGATGCTGTGCTCTTTCTAAGGGGTGAAAATGGAGAGCTGAGATTGGGAATCAGAAGAGCTGTTAGACCTAGAAATGGTCTTCCTGAATCAATTGTTGGTAATCAGAATTGTTATCCCAATTTCCTTTCATCTGTTGCAAATGCTATATCCACCAAAAGCATGTTTCATGTTTTCTATAGTCCAAGAGCAAGTCATGCAGAGTTTGTTGTTCCGTACCAAAAATATGTTAAAAGCATCAAGAATCCAGTGAGTATAGGGACAAGGTTCAAAATGAGAATTGAAATGGATGAATCACCAGAAAGAAGGTGTAGTAGTGGTATGTTGATTGGAATAAATGATTTGGATCCCTATAGATGGCCTAAATCAAAATGGAGGTGCTTGATGGTAAGATGGGATGAGGATACTGAGACTAATCATCAAGACCGAGTATCGCCATGGGAGATCGATCTTTCTTCTCCTCAGCCTCCCCTAAGCATTCAGTCTTCCCCAAGACTGAAGAAACCGCGGACCGGTCTACTGGTTACCTCACCCAATCACCTCATCACTGGTATGAATCCTAATGCAGGAATCAGTGGAATGATGGGCTTTGAGGAGTCAGTAAGATCACCAAAGGTCTTGCAAGGTCAAGAAAATACAGGTTTTATGTCACTATACTATGGATGTGACAAAGTAACCAACCAGCCAGGTTTTGAGTTGAGCACTTCAAGTCATCATCAAAACCTGGCATCAACTGGAATAGGAAAAGTAGTTACATCCTCTGAGCTTATGAGTGTTAATCCTTTCAGTTATGCAGGCTTTATGGAAAGTAACAACTTTCCAAGGGTCTTGCAAGGTCAAGAAATATGTAAACTGAAATCCCTTTCAGGAAAAGCTGATTTCAACATCGGAGCTTGGGGAACCAAGCCTAGTTTTCAATCTGCATGTTTTCCTTACAGAGATATTGACAAAGCTAATCAAGCTAATATTTTTAGCTCAAAACACACCAATTTCATGAGTGATAATGTCCCGTTTAACACACCATCGATAGTGGCAGGGAACATTAGAAAAGAAGTTGGAAGATCTGGATCTAATCTCCTTCCAAATGAGCATAAGCTCCAGGACAATGTTTCTGCTTCTGCTTCATTAGGGGATACTAATATAAAGTTCCAAATGATAACAATGTCAAGGGAAATGCAAATTCCTGCAAACTATTCGGCTTTCCTTTGTCTGGCGAACCTAGTAGTCAAAATTTACAGAACACTTCAAAAAGGAGTTGCACAAAGGTGA

Protein sequence

>Msa0683020

MEIDLNNEVIEVEKNALCHKECEKGFCFCVSCLSPSTCSSSSSTSPLVSSSYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQFASFSPFKQLEIPNYDLQPQIFCRVVNVQLLANKENDEVYTQVTLLPQAELAGMHMEGKEVEELEGDEEGDGGSPTKSTPHMFCKTLTVSDTSTHGGFSVPRRAAEDCFPPLDYKLQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVNQKNLVSGDAVLFLRGENGELRLGIRRAVRPRNGLPESIVGNQNCYPNFLSSVANAISTKSMFHVFYSPRASHAEFVVPYQKYVKSIKNPVSIGTRFKMRIEMDESPERRCSSGMLIGINDLDPYRWPKSKWRCLMVRWDEDTETNHQDRVSPWEIDLSSPQPPLSIQSSPRLKKPRTGLLVTSPNHLITGMNPNAGISGMMGFEESVRSPKVLQGQENTGFMSLYYGCDKVTNQPGFELSTSSHHQNLASTGIGKVVTSSELMSVNPFSYAGFMESNNFPRVLQGQEICKLKSLSGKADFNIGAWGTKPSFQSACFPYRDIDKANQANIFSSKHTNFMSDNVPFNTPSIVAGNIRKEVGRSGSNLLPNEHKLQDNVSASASLGDTNIKFQMITMSREMQIPANYSAFLCLANLVVKIYRTLQKGVAQR*