AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0683830

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0683830 MtrunA17_Chr4g0030901 85.806 465 6 4 11 428 2 453 0.0 796
Msa0683830 MtrunA17_Chr7g0222931 36.784 541 211 15 11 425 2 537 1.99e-94 294
Msa0683830 MtrunA17_Chr1g0182221 49.270 274 116 4 169 420 257 529 1.32e-78 253
Msa0683830 MtrunA17_Chr1g0182221 32.911 237 133 7 11 226 2 233 4.47e-24 104
Msa0683830 MtrunA17_Chr1g0182481 46.377 138 73 1 281 417 242 379 3.50e-38 147
Msa0683830 MtrunA17_Chr7g0265211 33.835 133 85 2 274 403 228 360 1.40e-16 82.4
Msa0683830 MtrunA17_Chr2g0320451 33.945 109 66 1 293 395 226 334 1.85e-15 79.0
Msa0683830 MtrunA17_Chr1g0179841 33.594 128 81 1 280 403 82 209 2.53e-14 75.1
Msa0683830 MtrunA17_Chr2g0320431 32.110 109 68 1 293 395 23 131 4.99e-14 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0683830 AT5G59830.3 43.991 441 207 13 11 428 2 425 1.10e-113 340
Msa0683830 AT5G59830.1 43.991 441 207 13 11 428 2 425 1.10e-113 340
Msa0683830 AT5G59830.2 43.991 441 207 13 11 428 2 425 1.10e-113 340
Msa0683830 AT5G13660.2 60.265 151 58 1 280 428 385 535 9.08e-58 198
Msa0683830 AT5G13660.1 60.667 150 58 1 280 428 385 534 1.23e-57 198
Msa0683830 AT3G53680.2 41.808 177 94 4 243 411 126 301 2.21e-37 145
Msa0683830 AT3G53680.1 41.808 177 94 4 243 411 126 301 2.40e-37 145
Msa0683830 AT2G37520.1 46.565 131 69 1 292 421 171 301 2.26e-35 139
Msa0683830 AT5G13660.4 57.812 64 25 1 280 341 385 448 4.22e-16 80.5
Msa0683830 AT5G13660.6 58.730 63 25 1 280 341 385 447 5.72e-16 80.1
Msa0683830 AT5G13660.7 58.730 63 25 1 280 341 385 447 5.72e-16 80.1
Msa0683830 AT2G36720.1 37.000 100 60 1 294 390 261 360 7.28e-14 74.3
Msa0683830 AT2G36720.2 37.000 100 60 1 294 390 261 360 7.28e-14 74.3
Msa0683830 AT2G27980.1 27.485 171 101 5 238 402 338 491 3.40e-11 65.9

Find 136 sgRNAs with CRISPR-Local

Find 365 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATTAATTGATCGATTATT+TGG 0.067636 4_4:+46792120 Msa0683830:CDS
TCTGAACCATGTATGAATTT+TGG 0.091302 4_4:+46792285 Msa0683830:CDS
ATCGATCAATTAATTGATTT+TGG 0.128367 4_4:-46792113 None:intergenic
CGTGAGCTTCAACGGATTTA+TGG 0.136181 4_4:+46793524 Msa0683830:CDS
CGAAATGCTTTCTGATTTAT+TGG 0.172704 4_4:-46793338 None:intergenic
TTTGATATCTTGTTTATTCT+TGG 0.187546 4_4:-46792796 None:intergenic
GTGTCAAACAATGAACTTTC+AGG 0.198974 4_4:-46793293 None:intergenic
TTCCTGTACTATTTGATAAA+TGG 0.243583 4_4:-46793258 None:intergenic
TATGGAGATGGTGCATCTTT+TGG 0.252084 4_4:+46792234 Msa0683830:CDS
GAGCAAGACTTGTTAATTTC+GGG 0.270886 4_4:+46793822 Msa0683830:three_prime_UTR
CTTTACAAAACAAGGGATTC+TGG 0.272026 4_4:+46791860 Msa0683830:CDS
GGAGCAAGACTTGTTAATTT+CGG 0.278962 4_4:+46793821 Msa0683830:three_prime_UTR
ATCAGAAAGCATTTCGCATT+TGG 0.289716 4_4:+46793345 Msa0683830:CDS
AGACCGTTTGGCACCCCTTA+TGG 0.301042 4_4:+46792519 Msa0683830:CDS
TCTATTGCTTGCTTCTTGTT+TGG 0.301219 4_4:-46792000 None:intergenic
TTGTTTAGCTCTGTGACTTT+TGG 0.301431 4_4:+46793658 Msa0683830:three_prime_UTR
TCAAAATAAATGTGATTGTT+TGG 0.311141 4_4:-46793224 None:intergenic
GAACTTCGTGGAATTATAAA+AGG 0.315503 4_4:+46793004 Msa0683830:CDS
TCATGTTCGTGGGTGATTAA+AGG 0.319909 4_4:+46793800 Msa0683830:three_prime_UTR
AACCATTGATGAGGTCGTTT+TGG 0.320545 4_4:-46791949 None:intergenic
GAGATAGCACCCCGTTCATC+TGG 0.326401 4_4:-46792621 None:intergenic
CGAAGGAAAGAGAGAGGAAT+AGG 0.330377 4_4:-46789590 None:intergenic
GAGACAAATATAATTTCTTT+TGG 0.334047 4_4:+46792591 Msa0683830:CDS
AAGATGATCGCAAATCATTA+TGG 0.336592 4_4:+46792216 Msa0683830:CDS
AGCACCTAATCCCAATGATT+TGG 0.339666 4_4:-46793739 None:intergenic
TTCTGGATGGTAAAGGGATC+TGG 0.342533 4_4:+46791877 Msa0683830:CDS
TGTTATCTACTTTGCCATAA+GGG 0.349075 4_4:-46792533 None:intergenic
ATGTCCAAATCATTGGGATT+AGG 0.354920 4_4:+46793735 Msa0683830:three_prime_UTR
TAAGCGGTTACCTTAGAAAA+TGG 0.360905 4_4:-46789715 None:intergenic
GTAACTTATGTCCAAATCAT+TGG 0.363263 4_4:+46793728 Msa0683830:three_prime_UTR
TTATTCTTGGACATAGATTC+AGG 0.367033 4_4:-46792783 None:intergenic
TCATCTAGGTAGGTGGTAAT+AGG 0.369142 4_4:-46789541 None:intergenic
TGGTGGGTTCCCAGATGAAC+GGG 0.370149 4_4:+46792611 Msa0683830:CDS
TGGTGCATTGTGTAACTTGT+TGG 0.377027 4_4:+46793678 Msa0683830:three_prime_UTR
GTTGGTTTCACTCAAAAGAT+TGG 0.382596 4_4:+46793696 Msa0683830:three_prime_UTR
GAGACGAGATCTGGATCAAC+AGG 0.382783 4_4:+46792426 Msa0683830:CDS
CTATTCCTCTCTCTTTCCTT+CGG 0.386939 4_4:+46789591 Msa0683830:five_prime_UTR
ATCAAGCTCCTGACATTAGT+AGG 0.391092 4_4:-46792849 None:intergenic
AATTAATTGATCGATTATTT+GGG 0.397385 4_4:+46792121 Msa0683830:CDS
GTGTTATCTACTTTGCCATA+AGG 0.399952 4_4:-46792534 None:intergenic
ACATTAGTAGGGAAGGTGTT+TGG 0.404286 4_4:-46792837 None:intergenic
CAAAGATGGTGGGGACTTAG+AGG 0.407569 4_4:-46793562 None:intergenic
GCGCAAACTTAACTTAGGTT+AGG 0.418573 4_4:+46793584 Msa0683830:three_prime_UTR
GAGATGATCGGAACCCTAAC+CGG 0.420588 4_4:-46789638 None:intergenic
GGGGAAGTTGAGACGAGATC+TGG 0.422910 4_4:+46792417 Msa0683830:CDS
ATCAAATAGTACAGGAATTG+AGG 0.425574 4_4:+46793264 Msa0683830:CDS
AATACCTACGTTTCGGGCGA+TGG 0.429341 4_4:+46792177 Msa0683830:CDS
CCACGAGATTTCCTCAATTG+AGG 0.431996 4_4:+46789511 None:intergenic
TAACTTATGTCCAAATCATT+GGG 0.436654 4_4:+46793729 Msa0683830:three_prime_UTR
AAAGGAACTACCTATCTTTG+TGG 0.443908 4_4:+46793022 Msa0683830:CDS
CTTGCAGTCTTTACAAAACA+AGG 0.446967 4_4:+46791852 Msa0683830:intron
TGACTGACACCCACAAAGAT+AGG 0.451929 4_4:-46793032 None:intergenic
ATATCTACTGGTATGCTAGA+TGG 0.454824 4_4:+46792870 Msa0683830:CDS
GATGCCCGTATCAGACCGTT+TGG 0.458600 4_4:+46792507 Msa0683830:CDS
GCAAATGAAAGATCTAGTTC+AGG 0.460327 4_4:+46792027 Msa0683830:CDS
AAGGGATTCTGGATGGTAAA+GGG 0.463414 4_4:+46791871 Msa0683830:CDS
TAATTTCGGGGCACTGAACT+CGG 0.466461 4_4:+46793835 Msa0683830:three_prime_UTR
ATGGGACTTGCCTATGGCAG+TGG 0.470833 4_4:+46792483 Msa0683830:CDS
TCTTTGCGCAAACTTAACTT+AGG 0.471362 4_4:+46793579 Msa0683830:three_prime_UTR
TTCAGTGAAATTGACAGGCC+TGG 0.472169 4_4:-46792151 None:intergenic
GGGTGCCAAACGGTCTGATA+CGG 0.474649 4_4:-46792512 None:intergenic
CAAGGGATTCTGGATGGTAA+AGG 0.476414 4_4:+46791870 Msa0683830:CDS
GTCAGGAGCTTGATATCTAC+TGG 0.476574 4_4:+46792858 Msa0683830:CDS
GAAGGAAAGAGAGAGGAATA+GGG 0.478845 4_4:-46789589 None:intergenic
TTGGTGGGTTCCCAGATGAA+CGG 0.479213 4_4:+46792610 Msa0683830:CDS
GATCTACACCATGTCTATCA+TGG 0.482318 4_4:+46792396 Msa0683830:CDS
TGTCAAACAATGAACTTTCA+GGG 0.482656 4_4:-46793292 None:intergenic
CTCTAGAAAGCTCATGTTCG+TGG 0.485379 4_4:+46793789 Msa0683830:three_prime_UTR
TGTAGTTGCAAGTACTCCTT+TGG 0.489839 4_4:+46792746 Msa0683830:CDS
AAGTTAAGTTTGCGCAAAGA+TGG 0.494942 4_4:-46793576 None:intergenic
GATTATTTGGGTCTGAAACC+AGG 0.501220 4_4:+46792133 Msa0683830:CDS
ATCTACACCATGTCTATCAT+GGG 0.502576 4_4:+46792397 Msa0683830:CDS
TTGGAAGGATTATCAAATGC+CGG 0.504114 4_4:-46791919 None:intergenic
AGAGAGGAATAGGGTGTGTG+AGG 0.506327 4_4:-46789580 None:intergenic
CAGCAACACGTGAGCTTCAA+CGG 0.506790 4_4:+46793516 Msa0683830:CDS
GAAGTATGTCTCGGTGGCGC+GGG 0.512915 4_4:+46792902 Msa0683830:CDS
ACGGGCATCCCCACTGCCAT+AGG 0.513675 4_4:-46792493 None:intergenic
TTATGGATGCAGGAACTTCG+TGG 0.515292 4_4:+46792992 Msa0683830:intron
AAGGAACTACCTATCTTTGT+GGG 0.520214 4_4:+46793023 Msa0683830:CDS
TATAAGATTCAGCAATGGAT+AGG 0.522976 4_4:-46792560 None:intergenic
GTTATCTACTTTGCCATAAG+GGG 0.524676 4_4:-46792532 None:intergenic
GGTTTCACTCAAAAGATTGG+AGG 0.526129 4_4:+46793699 Msa0683830:three_prime_UTR
TCTGGATGGTAAAGGGATCT+GGG 0.526557 4_4:+46791878 Msa0683830:CDS
GACCATTTATCAAATAGTAC+AGG 0.526696 4_4:+46793256 Msa0683830:CDS
TGAAGTATGTCTCGGTGGCG+CGG 0.530846 4_4:+46792901 Msa0683830:CDS
AACCAAAACGACCTCATCAA+TGG 0.536411 4_4:+46791947 Msa0683830:CDS
GACATTGCCATCCTTGTCAA+AGG 0.543189 4_4:-46792454 None:intergenic
TTGCCATAAGGGGTGCCAAA+CGG 0.546220 4_4:-46792522 None:intergenic
TAAGTTTGCGCAAAGATGGT+GGG 0.548142 4_4:-46793572 None:intergenic
TGGGACTTGCCTATGGCAGT+GGG 0.549439 4_4:+46792484 Msa0683830:CDS
GGTGCCAAACGGTCTGATAC+GGG 0.551701 4_4:-46792511 None:intergenic
AAAGCATTTCGCATTTGGAA+AGG 0.553389 4_4:+46793350 Msa0683830:CDS
TGGTTAATTGATGCAACTGA+AGG 0.554560 4_4:+46791967 Msa0683830:CDS
ACACCTTCCCTACTAATGTC+AGG 0.559082 4_4:+46792841 Msa0683830:CDS
TTAAGTTTGCGCAAAGATGG+TGG 0.560921 4_4:-46793573 None:intergenic
AACAGCTCATGAGAAAGAGT+TGG 0.562612 4_4:+46792707 Msa0683830:CDS
ATCGCAAATCATTATGGAGA+TGG 0.565757 4_4:+46792222 Msa0683830:CDS
TTCGAGTTTGAAAAGCATGC+TGG 0.566420 4_4:+46793185 Msa0683830:CDS
GGGCAAGCCTTTGACAAGGA+TGG 0.567272 4_4:+46792447 Msa0683830:CDS
GGTTAATTGATGCAACTGAA+GGG 0.567822 4_4:+46791968 Msa0683830:CDS
AATTGATAGCATTATAGAAG+CGG 0.574748 4_4:-46789686 None:intergenic
GAAAGCCGAAGGAAAGAGAG+AGG 0.575601 4_4:-46789596 None:intergenic
GCATGTTAGTGACAGAGAGC+CGG 0.576985 4_4:+46791900 Msa0683830:CDS
GTATGTCTCGGTGGCGCGGG+AGG 0.577134 4_4:+46792905 Msa0683830:CDS
TAGGATATGAACCTCAATTG+AGG 0.578513 4_4:-46789522 None:intergenic
ACAAAACAAGGGATTCTGGA+TGG 0.579040 4_4:+46791864 Msa0683830:CDS
GTTAATTGATGCAACTGAAG+GGG 0.584842 4_4:+46791969 Msa0683830:CDS
AGAACCATCGCCCGAAACGT+AGG 0.586722 4_4:-46792181 None:intergenic
TCAAGCTCCTGACATTAGTA+GGG 0.592776 4_4:-46792848 None:intergenic
GCTCCTGACATTAGTAGGGA+AGG 0.594371 4_4:-46792844 None:intergenic
AGATAGCACCCCGTTCATCT+GGG 0.596404 4_4:-46792620 None:intergenic
TTCAAATACACAAGAAAACT+CGG 0.599516 4_4:+46793891 Msa0683830:three_prime_UTR
TTGCAGTCTTTACAAAACAA+GGG 0.608181 4_4:+46791853 Msa0683830:intron
TTTATTATAAGATTCAGCAA+TGG 0.610633 4_4:-46792565 None:intergenic
AGCAAGACTTGTTAATTTCG+GGG 0.610779 4_4:+46793823 Msa0683830:three_prime_UTR
TCTAGAAAGCTCATGTTCGT+GGG 0.612589 4_4:+46793790 Msa0683830:three_prime_UTR
CAACTTCCCCATGATAGACA+TGG 0.618862 4_4:-46792404 None:intergenic
TCTGTACCATCGGAGATGAT+CGG 0.619826 4_4:-46789650 None:intergenic
GCATCAATTAACCATTGATG+AGG 0.620118 4_4:-46791958 None:intergenic
TCAGTCATGTAACTATTCCA+AGG 0.620903 4_4:+46793048 Msa0683830:CDS
GCCACCGAGACATACTTCAC+AGG 0.621034 4_4:-46792897 None:intergenic
ACGACGGCGGAGAAAGCCGA+AGG 0.627616 4_4:-46789607 None:intergenic
GTCAAACAATGAACTTTCAG+GGG 0.632047 4_4:-46793291 None:intergenic
AGGGTTCCGATCATCTCCGA+TGG 0.636826 4_4:+46789644 Msa0683830:five_prime_UTR
ATAGCATTATAGAAGCGGAA+AGG 0.641397 4_4:-46789681 None:intergenic
GGTTACACGATCTGTACCAT+CGG 0.642533 4_4:-46789660 None:intergenic
AACAGGGCAAGCCTTTGACA+AGG 0.649294 4_4:+46792443 Msa0683830:CDS
AAGTTTGCGCAAAGATGGTG+GGG 0.650497 4_4:-46793571 None:intergenic
GGTGGGTTCCCAGATGAACG+GGG 0.659474 4_4:+46792612 Msa0683830:CDS
GGGACTTGCCTATGGCAGTG+GGG 0.687403 4_4:+46792485 Msa0683830:CDS
TGTTCCTGTGAAGTATGTCT+CGG 0.693290 4_4:+46792893 Msa0683830:CDS
TCCTGTGAAGTATGTCTCGG+TGG 0.694815 4_4:+46792896 Msa0683830:CDS
CTAGAATCCATCAACCCATG+AGG 0.695569 4_4:-46793932 None:intergenic
TCTACACCATGTCTATCATG+GGG 0.701654 4_4:+46792398 Msa0683830:CDS
AACAAGATATCAAATCAACA+AGG 0.715980 4_4:+46792805 Msa0683830:CDS
AGACGAGATCTGGATCAACA+GGG 0.736721 4_4:+46792427 Msa0683830:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAACATTAAATCTAAAAAA+GGG - chr4_4:46791028-46791047 None:intergenic 10.0%
!! AAAAAAAAAAAAAAACAACT+TGG - chr4_4:46791720-46791739 None:intergenic 10.0%
!! TAAAAGAATATAACTTATAA+AGG - chr4_4:46792975-46792994 None:intergenic 10.0%
!!! TTATAAGTTATATTCTTTTA+TGG + chr4_4:46792975-46792994 Msa0683830:intron 10.0%
!! AATTAATTAATTAAGAAGAG+TGG - chr4_4:46789893-46789912 None:intergenic 15.0%
!!! TTTATTTTTTGTCATTGAAT+TGG + chr4_4:46790335-46790354 Msa0683830:intron 15.0%
!!! ATTTTTTAGAGTAAAATTTG+AGG + chr4_4:46790577-46790596 Msa0683830:intron 15.0%
!!! TTTTTTAGAGTAAAATTTGA+GGG + chr4_4:46790578-46790597 Msa0683830:intron 15.0%
!! CTAAACATTAAATCTAAAAA+AGG - chr4_4:46791029-46791048 None:intergenic 15.0%
!!! TCTTTTTTTTTAATGTTCTT+GGG - chr4_4:46791573-46791592 None:intergenic 15.0%
!!! TTCTTTTTTTTTAATGTTCT+TGG - chr4_4:46791574-46791593 None:intergenic 15.0%
!!! ATTTTATACAATGCAATAAT+AGG + chr4_4:46791649-46791668 Msa0683830:intron 15.0%
!! AATTAATTGATCGATTATTT+GGG + chr4_4:46792121-46792140 Msa0683830:CDS 15.0%
!! TAATATAAAACATCAATCAA+AGG - chr4_4:46793149-46793168 None:intergenic 15.0%
!!! ATTGATGTTTTATATTATCA+GGG + chr4_4:46793152-46793171 Msa0683830:intron 15.0%
!!! AAATGTTGAATTTTATTGTT+TGG + chr4_4:46793424-46793443 Msa0683830:intron 15.0%
!!! AATGTTGAATTTTATTGTTT+GGG + chr4_4:46793425-46793444 Msa0683830:intron 15.0%
!!! AATTTTTTCACCATTTTCTA+AGG + chr4_4:46789705-46789724 Msa0683830:CDS 20.0%
!!! TGAATTCTATGAATTTTGTT+TGG + chr4_4:46789777-46789796 Msa0683830:intron 20.0%
!!! TTCAAGTTATAAACTTTCTA+AGG - chr4_4:46789969-46789988 None:intergenic 20.0%
!! ATATTGTTAGTTATGTTAAG+AGG + chr4_4:46790180-46790199 Msa0683830:intron 20.0%
!! TATTGTTAGTTATGTTAAGA+GGG + chr4_4:46790181-46790200 Msa0683830:intron 20.0%
!!! AGTCTATGACATTTTAATAA+TGG + chr4_4:46790275-46790294 Msa0683830:intron 20.0%
!! TTGTGTTAATGTTAATATGA+TGG + chr4_4:46790400-46790419 Msa0683830:intron 20.0%
!! TGTGTTAATGTTAATATGAT+GGG + chr4_4:46790401-46790420 Msa0683830:intron 20.0%
!! TTGGATAAACAATTTAAATG+AGG + chr4_4:46790851-46790870 Msa0683830:intron 20.0%
!! TGGATAAACAATTTAAATGA+GGG + chr4_4:46790852-46790871 Msa0683830:intron 20.0%
!! TATGAATTTCTTAATTGATG+AGG + chr4_4:46790950-46790969 Msa0683830:intron 20.0%
!!! AAATTTTAGGGATAAATCAT+AGG + chr4_4:46790979-46790998 Msa0683830:intron 20.0%
!! TTGCATTGTATAAAATACAA+GGG - chr4_4:46791645-46791664 None:intergenic 20.0%
!! ATTGCATTGTATAAAATACA+AGG - chr4_4:46791646-46791665 None:intergenic 20.0%
!! AAAAAAAAAAAACAACTTGG+TGG - chr4_4:46791717-46791736 None:intergenic 20.0%
!!! ATCGATCAATTAATTGATTT+TGG - chr4_4:46792116-46792135 None:intergenic 20.0%
!! CAATTAATTGATCGATTATT+TGG + chr4_4:46792120-46792139 Msa0683830:CDS 20.0%
!! TTTATTATAAGATTCAGCAA+TGG - chr4_4:46792568-46792587 None:intergenic 20.0%
!!! GAGACAAATATAATTTCTTT+TGG + chr4_4:46792591-46792610 Msa0683830:CDS 20.0%
!!! ACAAATATAATTTCTTTTGG+TGG + chr4_4:46792594-46792613 Msa0683830:CDS 20.0%
!!! CAAATATAATTTCTTTTGGT+GGG + chr4_4:46792595-46792614 Msa0683830:CDS 20.0%
!!! TTTGATATCTTGTTTATTCT+TGG - chr4_4:46792799-46792818 None:intergenic 20.0%
!! AAAACCATTATTAAGATGTT+TGG - chr4_4:46793101-46793120 None:intergenic 20.0%
!!! GATTGATGTTTTATATTATC+AGG + chr4_4:46793151-46793170 Msa0683830:intron 20.0%
!! TCAAAATAAATGTGATTGTT+TGG - chr4_4:46793227-46793246 None:intergenic 20.0%
!!! AATCACATTTATTTTGAGAA+TGG + chr4_4:46793230-46793249 Msa0683830:CDS 20.0%
!!! ATCACATTTATTTTGAGAAT+GGG + chr4_4:46793231-46793250 Msa0683830:CDS 20.0%
!! AAGACAAATAAAAATGTTAC+AGG - chr4_4:46793873-46793892 None:intergenic 20.0%
!! AATTGATAGCATTATAGAAG+CGG - chr4_4:46789689-46789708 None:intergenic 25.0%
!!! AAATCTATAGTGGATTTTTC+AGG + chr4_4:46789998-46790017 Msa0683830:intron 25.0%
! AAAATGTCATAGACTAATCT+GGG - chr4_4:46790270-46790289 None:intergenic 25.0%
! TAAAATGTCATAGACTAATC+TGG - chr4_4:46790271-46790290 None:intergenic 25.0%
!!! CTATGTTTGTTATCTGAAAT+TGG + chr4_4:46790424-46790443 Msa0683830:intron 25.0%
! AACTATCAATCAGAAATCAA+GGG - chr4_4:46790687-46790706 None:intergenic 25.0%
!!! CACTTTTTCTTCTTCTAAAT+TGG + chr4_4:46790716-46790735 Msa0683830:intron 25.0%
! AGTCAAATGCATATCATTAA+GGG + chr4_4:46790756-46790775 Msa0683830:intron 25.0%
! TAAGATATTATGCTTCTGTT+TGG + chr4_4:46790832-46790851 Msa0683830:intron 25.0%
!!! AATGGATTGTGATAAAAGAA+AGG + chr4_4:46790885-46790904 Msa0683830:intron 25.0%
! CTAATTTAAATGAGCTAGTT+AGG + chr4_4:46790922-46790941 Msa0683830:intron 25.0%
! AGACAGTGATAAGTTAATAA+TGG - chr4_4:46791543-46791562 None:intergenic 25.0%
! TATTAACTTATCACTGTCTA+AGG + chr4_4:46791544-46791563 Msa0683830:intron 25.0%
! TGCATTGTATAAAATACAAG+GGG - chr4_4:46791644-46791663 None:intergenic 25.0%
!! AAATGTAAATTTTACTCCGT+GGG + chr4_4:46792056-46792075 Msa0683830:intron 25.0%
!!! GATCAATTAATTGATTTTGG+TGG - chr4_4:46792113-46792132 None:intergenic 25.0%
!!! TTTTTTTCAGTGAAATTGAC+AGG - chr4_4:46792159-46792178 None:intergenic 25.0%
! TGAAAAAAATACCTACGTTT+CGG + chr4_4:46792170-46792189 Msa0683830:CDS 25.0%
! AACAAGATATCAAATCAACA+AGG + chr4_4:46792805-46792824 Msa0683830:CDS 25.0%
!! TTATATTCTTTTATGGATGC+AGG + chr4_4:46792982-46793001 Msa0683830:intron 25.0%
! TTCCTGTACTATTTGATAAA+TGG - chr4_4:46793261-46793280 None:intergenic 25.0%
! TAACTTATGTCCAAATCATT+GGG + chr4_4:46793729-46793748 Msa0683830:three_prime_UTR 25.0%
! TTCAAATACACAAGAAAACT+CGG + chr4_4:46793891-46793910 Msa0683830:three_prime_UTR 25.0%
!!! AATATTTTAGTTGTTCCTCA+TGG + chr4_4:46793917-46793936 Msa0683830:three_prime_UTR 25.0%
!! AATTAAGAAGAGTGGATTAG+TGG - chr4_4:46789885-46789904 None:intergenic 30.0%
AGTGAAGAACAAATCTATAG+TGG + chr4_4:46789988-46790007 Msa0683830:intron 30.0%
! ATATTTTTCACCTGCAAAAG+TGG + chr4_4:46790022-46790041 Msa0683830:intron 30.0%
! GTTATCTGAAATTGGAATTG+AGG + chr4_4:46790432-46790451 Msa0683830:intron 30.0%
! ATGCTTCATGTTTTCCTTTT+GGG + chr4_4:46790469-46790488 Msa0683830:intron 30.0%
!!! CATTCTACGATCTTATTTTG+AGG + chr4_4:46790554-46790573 Msa0683830:intron 30.0%
CAACTATCAATCAGAAATCA+AGG - chr4_4:46790688-46790707 None:intergenic 30.0%
! CTTGATTTCTGATTGATAGT+TGG + chr4_4:46790686-46790705 Msa0683830:intron 30.0%
!! TTTGACTCCTCTAAAGTAAA+GGG - chr4_4:46790743-46790762 None:intergenic 30.0%
!! ATTTGACTCCTCTAAAGTAA+AGG - chr4_4:46790744-46790763 None:intergenic 30.0%
GAGTCAAATGCATATCATTA+AGG + chr4_4:46790755-46790774 Msa0683830:intron 30.0%
CAATTTAAATGAGGGCTTAA+AGG + chr4_4:46790860-46790879 Msa0683830:intron 30.0%
GAATTTCTTAATTGATGAGG+AGG + chr4_4:46790953-46790972 Msa0683830:intron 30.0%
TTTGATTATGTCACACAACT+AGG - chr4_4:46791081-46791100 None:intergenic 30.0%
CAGAAAAGAAGATAAACTGA+AGG - chr4_4:46791104-46791123 None:intergenic 30.0%
GTTGAAATGTAATAGAAGCA+TGG + chr4_4:46791270-46791289 Msa0683830:intron 30.0%
! ATGATTTTCCACATTTCCTT+TGG - chr4_4:46791380-46791399 None:intergenic 30.0%
! GGGATAAAACTCATTCTTTT+TGG - chr4_4:46791407-46791426 None:intergenic 30.0%
TATAAAATACAAGGGGAAGA+GGG - chr4_4:46791637-46791656 None:intergenic 30.0%
TTAATCAATCCAACTGACAT+AGG - chr4_4:46791762-46791781 None:intergenic 30.0%
TTGCAGTCTTTACAAAACAA+GGG + chr4_4:46791853-46791872 Msa0683830:intron 30.0%
! CAAATGTAAATTTTACTCCG+TGG + chr4_4:46792055-46792074 Msa0683830:intron 30.0%
!! TTAATTGATTTTGGTGGCTT+GGG - chr4_4:46792107-46792126 None:intergenic 30.0%
!! ATTAATTGATTTTGGTGGCT+TGG - chr4_4:46792108-46792127 None:intergenic 30.0%
GAAAAAAATACCTACGTTTC+GGG + chr4_4:46792171-46792190 Msa0683830:CDS 30.0%
AAGATGATCGCAAATCATTA+TGG + chr4_4:46792216-46792235 Msa0683830:CDS 30.0%
! TCTGAACCATGTATGAATTT+TGG + chr4_4:46792285-46792304 Msa0683830:CDS 30.0%
! CTGAACCATGTATGAATTTT+GGG + chr4_4:46792286-46792305 Msa0683830:CDS 30.0%
! TGAACCATGTATGAATTTTG+GGG + chr4_4:46792287-46792306 Msa0683830:CDS 30.0%
CAAGAAAGTCAAAGTAAATC+AGG + chr4_4:46792314-46792333 Msa0683830:intron 30.0%
!!! GATGGCAATGTCATTTTAAT+GGG + chr4_4:46792465-46792484 Msa0683830:CDS 30.0%
TGTTATCTACTTTGCCATAA+GGG - chr4_4:46792536-46792555 None:intergenic 30.0%
TATAAGATTCAGCAATGGAT+AGG - chr4_4:46792563-46792582 None:intergenic 30.0%
TTATTCTTGGACATAGATTC+AGG - chr4_4:46792786-46792805 None:intergenic 30.0%
GAACTTCGTGGAATTATAAA+AGG + chr4_4:46793004-46793023 Msa0683830:CDS 30.0%
CTGACCAAACATCTTAATAA+TGG + chr4_4:46793094-46793113 Msa0683830:intron 30.0%
ATCAATCAAAGGTAATCTAC+AGG - chr4_4:46793138-46793157 None:intergenic 30.0%
GACCATTTATCAAATAGTAC+AGG + chr4_4:46793256-46793275 Msa0683830:CDS 30.0%
ATCAAATAGTACAGGAATTG+AGG + chr4_4:46793264-46793283 Msa0683830:CDS 30.0%
TGTCAAACAATGAACTTTCA+GGG - chr4_4:46793295-46793314 None:intergenic 30.0%
! GACACAATCCAAACAATTTT+TGG + chr4_4:46793311-46793330 Msa0683830:CDS 30.0%
CGAAATGCTTTCTGATTTAT+TGG - chr4_4:46793341-46793360 None:intergenic 30.0%
TAGTCTGTTTGTGCTTAAAA+AGG - chr4_4:46793391-46793410 None:intergenic 30.0%
TTTAAGCACAAACAGACTAA+CGG + chr4_4:46793392-46793411 Msa0683830:intron 30.0%
!! TTTTATTGTTTGGGCTTGTT+TGG + chr4_4:46793434-46793453 Msa0683830:intron 30.0%
GGCAAGAGTTACAAAAAAAT+GGG - chr4_4:46793472-46793491 None:intergenic 30.0%
TGGCAAGAGTTACAAAAAAA+TGG - chr4_4:46793473-46793492 None:intergenic 30.0%
!!! TTTTTTGTAACTCTTGCCAA+TGG + chr4_4:46793474-46793493 Msa0683830:intron 30.0%
GTAACTTATGTCCAAATCAT+TGG + chr4_4:46793728-46793747 Msa0683830:three_prime_UTR 30.0%
TAGGATATGAACCTCAATTG+AGG - chr4_4:46789525-46789544 None:intergenic 35.0%
!!! TTTTTTCTCATCTAGGTAGG+TGG - chr4_4:46789551-46789570 None:intergenic 35.0%
!!! CGATTTTTTCTCATCTAGGT+AGG - chr4_4:46789554-46789573 None:intergenic 35.0%
!!! CACTCGATTTTTTCTCATCT+AGG - chr4_4:46789558-46789577 None:intergenic 35.0%
ATAGCATTATAGAAGCGGAA+AGG - chr4_4:46789684-46789703 None:intergenic 35.0%
TAAGCGGTTACCTTAGAAAA+TGG - chr4_4:46789718-46789737 None:intergenic 35.0%
GCTCAAGAATTATGAGTAAG+CGG - chr4_4:46789734-46789753 None:intergenic 35.0%
ACTTTGACCTATTTGCAAGA+GGG - chr4_4:46790158-46790177 None:intergenic 35.0%
AAATTGTGAAGGGCCAAATT+GGG - chr4_4:46790211-46790230 None:intergenic 35.0%
AAAATTGTGAAGGGCCAAAT+TGG - chr4_4:46790212-46790231 None:intergenic 35.0%
!!! AATTTTTTCGTGGCCCAATT+CGG + chr4_4:46790226-46790245 Msa0683830:intron 35.0%
! TTGTTGTTAGAGACCGAATT+GGG - chr4_4:46790242-46790261 None:intergenic 35.0%
!! TTTGTTGTTAGAGACCGAAT+TGG - chr4_4:46790243-46790262 None:intergenic 35.0%
ACAAATTAGTCCCTATGTCA+GGG + chr4_4:46790300-46790319 Msa0683830:intron 35.0%
CAAATTATTCCCCTGACATA+GGG - chr4_4:46790313-46790332 None:intergenic 35.0%
CTATGTCAGGGGAATAATTT+GGG + chr4_4:46790312-46790331 Msa0683830:intron 35.0%
! GATGCTTCATGTTTTCCTTT+TGG + chr4_4:46790468-46790487 Msa0683830:intron 35.0%
! TGCTTCATGTTTTCCTTTTG+GGG + chr4_4:46790470-46790489 Msa0683830:intron 35.0%
TAGACGAGACAAAAATGAGA+TGG + chr4_4:46790523-46790542 Msa0683830:intron 35.0%
AGACGAGACAAAAATGAGAT+GGG + chr4_4:46790524-46790543 Msa0683830:intron 35.0%
AATTGGACCCTTTACTTTAG+AGG + chr4_4:46790733-46790752 Msa0683830:intron 35.0%
CATGACAGGCTTCATATAAT+TGG + chr4_4:46790779-46790798 Msa0683830:intron 35.0%
AATGAGGGCTTAAAGGAAAA+TGG + chr4_4:46790867-46790886 Msa0683830:intron 35.0%
! ATGAGGAGGCTCAAATTTTA+GGG + chr4_4:46790967-46790986 Msa0683830:intron 35.0%
TGTCACAGTCATATGTCATT+TGG + chr4_4:46791146-46791165 Msa0683830:intron 35.0%
AGCATGGAAGAGAAAAGAAA+AGG + chr4_4:46791286-46791305 Msa0683830:intron 35.0%
GCATGGAAGAGAAAAGAAAA+GGG + chr4_4:46791287-46791306 Msa0683830:intron 35.0%
CATGGAAGAGAAAAGAAAAG+GGG + chr4_4:46791288-46791307 Msa0683830:intron 35.0%
ATGGAAGAGAAAAGAAAAGG+GGG + chr4_4:46791289-46791308 Msa0683830:intron 35.0%
TAACGTTCTACCATACAACT+AGG + chr4_4:46791326-46791345 Msa0683830:intron 35.0%
CCTATTGAATCCTAGTTGTA+TGG - chr4_4:46791339-46791358 None:intergenic 35.0%
CCATACAACTAGGATTCAAT+AGG + chr4_4:46791336-46791355 Msa0683830:intron 35.0%
GGAATTTACCAAAGGAAATG+TGG + chr4_4:46791369-46791388 Msa0683830:intron 35.0%
!! GGGTTTGGTGAGTATAAAAT+GGG - chr4_4:46791427-46791446 None:intergenic 35.0%
!! AGGGTTTGGTGAGTATAAAA+TGG - chr4_4:46791428-46791447 None:intergenic 35.0%
ATAAAATACAAGGGGAAGAG+GGG - chr4_4:46791636-46791655 None:intergenic 35.0%
GTATAAAATACAAGGGGAAG+AGG - chr4_4:46791638-46791657 None:intergenic 35.0%
ATCCAACTGACATAGGATAA+AGG - chr4_4:46791755-46791774 None:intergenic 35.0%
CTTGCAGTCTTTACAAAACA+AGG + chr4_4:46791852-46791871 Msa0683830:intron 35.0%
CTTTACAAAACAAGGGATTC+TGG + chr4_4:46791860-46791879 Msa0683830:CDS 35.0%
TTGGAAGGATTATCAAATGC+CGG - chr4_4:46791922-46791941 None:intergenic 35.0%
GCATCAATTAACCATTGATG+AGG - chr4_4:46791961-46791980 None:intergenic 35.0%
TGGTTAATTGATGCAACTGA+AGG + chr4_4:46791967-46791986 Msa0683830:CDS 35.0%
GGTTAATTGATGCAACTGAA+GGG + chr4_4:46791968-46791987 Msa0683830:CDS 35.0%
GTTAATTGATGCAACTGAAG+GGG + chr4_4:46791969-46791988 Msa0683830:CDS 35.0%
TCTATTGCTTGCTTCTTGTT+TGG - chr4_4:46792003-46792022 None:intergenic 35.0%
! GCAAATGAAAGATCTAGTTC+AGG + chr4_4:46792027-46792046 Msa0683830:CDS 35.0%
AAATTGTGATTGTTCTCCCA+CGG - chr4_4:46792075-46792094 None:intergenic 35.0%
ATCGCAAATCATTATGGAGA+TGG + chr4_4:46792222-46792241 Msa0683830:CDS 35.0%
! GAACCATGTATGAATTTTGG+GGG + chr4_4:46792288-46792307 Msa0683830:CDS 35.0%
ATTCCCCCAAAATTCATACA+TGG - chr4_4:46792294-46792313 None:intergenic 35.0%
CTGTCAAAATTATGTTGCTC+TGG - chr4_4:46792363-46792382 None:intergenic 35.0%
!! CAGAGCAACATAATTTTGAC+AGG + chr4_4:46792361-46792380 Msa0683830:intron 35.0%
!! TAATTTTGACAGGCAGAGTA+TGG + chr4_4:46792371-46792390 Msa0683830:intron 35.0%
!! AATTTTGACAGGCAGAGTAT+GGG + chr4_4:46792372-46792391 Msa0683830:intron 35.0%
ATCTACACCATGTCTATCAT+GGG + chr4_4:46792397-46792416 Msa0683830:CDS 35.0%
!!! GGATGGCAATGTCATTTTAA+TGG + chr4_4:46792464-46792483 Msa0683830:CDS 35.0%
!! ATTTTAATGGGACTTGCCTA+TGG + chr4_4:46792477-46792496 Msa0683830:CDS 35.0%
GTTATCTACTTTGCCATAAG+GGG - chr4_4:46792535-46792554 None:intergenic 35.0%
GTGTTATCTACTTTGCCATA+AGG - chr4_4:46792537-46792556 None:intergenic 35.0%
ATATGACTGTTCATAGTCTG+TGG - chr4_4:46792661-46792680 None:intergenic 35.0%
ATATCTACTGGTATGCTAGA+TGG + chr4_4:46792870-46792889 Msa0683830:CDS 35.0%
AAAGGAACTACCTATCTTTG+TGG + chr4_4:46793022-46793041 Msa0683830:CDS 35.0%
AAGGAACTACCTATCTTTGT+GGG + chr4_4:46793023-46793042 Msa0683830:CDS 35.0%
TCAGTCATGTAACTATTCCA+AGG + chr4_4:46793048-46793067 Msa0683830:CDS 35.0%
TTCCAAGGTTAGTAATCCAT+TGG + chr4_4:46793063-46793082 Msa0683830:intron 35.0%
!! TACCAATGGATTACTAACCT+TGG - chr4_4:46793068-46793087 None:intergenic 35.0%
GTCAAACAATGAACTTTCAG+GGG - chr4_4:46793294-46793313 None:intergenic 35.0%
GTGTCAAACAATGAACTTTC+AGG - chr4_4:46793296-46793315 None:intergenic 35.0%
TTGGTGCACCAAAAATTGTT+TGG - chr4_4:46793322-46793341 None:intergenic 35.0%
!! ATCAGAAAGCATTTCGCATT+TGG + chr4_4:46793345-46793364 Msa0683830:CDS 35.0%
! AAAGCATTTCGCATTTGGAA+AGG + chr4_4:46793350-46793369 Msa0683830:CDS 35.0%
TGTTTGTGCTTAAAAAGGTC+GGG - chr4_4:46793386-46793405 None:intergenic 35.0%
CTGTTTGTGCTTAAAAAGGT+CGG - chr4_4:46793387-46793406 None:intergenic 35.0%
! GAAATGATTCTGAAGACCAT+TGG - chr4_4:46793493-46793512 None:intergenic 35.0%
AAGTTAAGTTTGCGCAAAGA+TGG - chr4_4:46793579-46793598 None:intergenic 35.0%
TCTTTGCGCAAACTTAACTT+AGG + chr4_4:46793579-46793598 Msa0683830:three_prime_UTR 35.0%
!!! TTGTTTAGCTCTGTGACTTT+TGG + chr4_4:46793658-46793677 Msa0683830:three_prime_UTR 35.0%
! GTTGGTTTCACTCAAAAGAT+TGG + chr4_4:46793696-46793715 Msa0683830:three_prime_UTR 35.0%
ATGTCCAAATCATTGGGATT+AGG + chr4_4:46793735-46793754 Msa0683830:three_prime_UTR 35.0%
!! GGAGCAAGACTTGTTAATTT+CGG + chr4_4:46793821-46793840 Msa0683830:three_prime_UTR 35.0%
!! GAGCAAGACTTGTTAATTTC+GGG + chr4_4:46793822-46793841 Msa0683830:three_prime_UTR 35.0%
!! AGCAAGACTTGTTAATTTCG+GGG + chr4_4:46793823-46793842 Msa0683830:three_prime_UTR 35.0%
TCATCTAGGTAGGTGGTAAT+AGG - chr4_4:46789544-46789563 None:intergenic 40.0%
GAAGGAAAGAGAGAGGAATA+GGG - chr4_4:46789592-46789611 None:intergenic 40.0%
CTATTCCTCTCTCTTTCCTT+CGG + chr4_4:46789591-46789610 Msa0683830:five_prime_UTR 40.0%
! CTAACCGGAGATTTTTACGA+CGG - chr4_4:46789626-46789645 None:intergenic 40.0%
GTCGTAAAAATCTCCGGTTA+GGG + chr4_4:46789625-46789644 Msa0683830:five_prime_UTR 40.0%
!! CCATTTGATTCCACTTTTGC+AGG - chr4_4:46790035-46790054 None:intergenic 40.0%
CCTGCAAAAGTGGAATCAAA+TGG + chr4_4:46790032-46790051 Msa0683830:intron 40.0%
GCTAAATCCCTCTTGCAAAT+AGG + chr4_4:46790148-46790167 Msa0683830:intron 40.0%
GACTTTGACCTATTTGCAAG+AGG - chr4_4:46790159-46790178 None:intergenic 40.0%
TTAAGAGGGTAGACCCAATT+TGG + chr4_4:46790195-46790214 Msa0683830:intron 40.0%
GGCCACGAAAAAATTGTGAA+GGG - chr4_4:46790221-46790240 None:intergenic 40.0%
GACAAATTAGTCCCTATGTC+AGG + chr4_4:46790299-46790318 Msa0683830:intron 40.0%
CAAATTAGTCCCTATGTCAG+GGG + chr4_4:46790301-46790320 Msa0683830:intron 40.0%
CCAAATTATTCCCCTGACAT+AGG - chr4_4:46790314-46790333 None:intergenic 40.0%
CCTATGTCAGGGGAATAATT+TGG + chr4_4:46790311-46790330 Msa0683830:intron 40.0%
!!! TCCCTCACATTTTTTTTCGC+GGG - chr4_4:46790361-46790380 None:intergenic 40.0%
!!! GTCCCTCACATTTTTTTTCG+CGG - chr4_4:46790362-46790381 None:intergenic 40.0%
AAAAATGTGAGGGACTGAAG+TGG + chr4_4:46790367-46790386 Msa0683830:intron 40.0%
AAAATGTGAGGGACTGAAGT+GGG + chr4_4:46790368-46790387 Msa0683830:intron 40.0%
GACGAGACAAAAATGAGATG+GGG + chr4_4:46790525-46790544 Msa0683830:intron 40.0%
ATTTGAGGGATCTCAATCGT+TGG + chr4_4:46790592-46790611 Msa0683830:intron 40.0%
TCAATCAGAAATCAAGGGTC+TGG - chr4_4:46790682-46790701 None:intergenic 40.0%
! CATATCATTAAGGGCATGAC+AGG + chr4_4:46790765-46790784 Msa0683830:intron 40.0%
! GATGAGGAGGCTCAAATTTT+AGG + chr4_4:46790966-46790985 Msa0683830:intron 40.0%
! CTCTTTTGCATGGTCTAATG+TGG - chr4_4:46791210-46791229 None:intergenic 40.0%
AACTTTGTTCACCCTTGATG+TGG - chr4_4:46791241-46791260 None:intergenic 40.0%
! GATTCAATAGGTTGAGACTC+TGG + chr4_4:46791348-46791367 Msa0683830:intron 40.0%
!! GAGACTCTGGAATTTACCAA+AGG + chr4_4:46791361-46791380 Msa0683830:intron 40.0%
AAACCCTTCTATACCCCATA+GGG + chr4_4:46791441-46791460 Msa0683830:intron 40.0%
AAGTTCCATAATGCCCTATG+GGG - chr4_4:46791457-46791476 None:intergenic 40.0%
CAAGTTCCATAATGCCCTAT+GGG - chr4_4:46791458-46791477 None:intergenic 40.0%
TCAAGTTCCATAATGCCCTA+TGG - chr4_4:46791459-46791478 None:intergenic 40.0%
! ATAGGGCATTATGGAACTTG+AGG + chr4_4:46791458-46791477 Msa0683830:intron 40.0%
! TAGGGCATTATGGAACTTGA+GGG + chr4_4:46791459-46791478 Msa0683830:intron 40.0%
TTCACCTATCCAAACTAGCA+GGG + chr4_4:46791498-46791517 Msa0683830:intron 40.0%
CAACTGACATAGGATAAAGG+AGG - chr4_4:46791752-46791771 None:intergenic 40.0%
CTCCTTTATCCTATGTCAGT+TGG + chr4_4:46791750-46791769 Msa0683830:intron 40.0%
ACAAAACAAGGGATTCTGGA+TGG + chr4_4:46791864-46791883 Msa0683830:CDS 40.0%
AAGGGATTCTGGATGGTAAA+GGG + chr4_4:46791871-46791890 Msa0683830:CDS 40.0%
!!! CGTTTTGGTTCGATTTTGGA+AGG - chr4_4:46791937-46791956 None:intergenic 40.0%
!!! AGGTCGTTTTGGTTCGATTT+TGG - chr4_4:46791941-46791960 None:intergenic 40.0%
AACCAAAACGACCTCATCAA+TGG + chr4_4:46791947-46791966 Msa0683830:CDS 40.0%
! AACCATTGATGAGGTCGTTT+TGG - chr4_4:46791952-46791971 None:intergenic 40.0%
! GATTATTTGGGTCTGAAACC+AGG + chr4_4:46792133-46792152 Msa0683830:CDS 40.0%
! TATGGAGATGGTGCATCTTT+TGG + chr4_4:46792234-46792253 Msa0683830:CDS 40.0%
GATCTACACCATGTCTATCA+TGG + chr4_4:46792396-46792415 Msa0683830:CDS 40.0%
TCTACACCATGTCTATCATG+GGG + chr4_4:46792398-46792417 Msa0683830:CDS 40.0%
AACAGCTCATGAGAAAGAGT+TGG + chr4_4:46792707-46792726 Msa0683830:CDS 40.0%
TGTAGTTGCAAGTACTCCTT+TGG + chr4_4:46792746-46792765 Msa0683830:CDS 40.0%
!!! GGCTTTTTTGTTGTCACCAA+AGG - chr4_4:46792765-46792784 None:intergenic 40.0%
!! ACATTAGTAGGGAAGGTGTT+TGG - chr4_4:46792840-46792859 None:intergenic 40.0%
TCAAGCTCCTGACATTAGTA+GGG - chr4_4:46792851-46792870 None:intergenic 40.0%
ATCAAGCTCCTGACATTAGT+AGG - chr4_4:46792852-46792871 None:intergenic 40.0%
TGTTCCTGTGAAGTATGTCT+CGG + chr4_4:46792893-46792912 Msa0683830:CDS 40.0%
TTGGTCAGAGTGTATACCAA+TGG - chr4_4:46793082-46793101 None:intergenic 40.0%
! TTCGAGTTTGAAAAGCATGC+TGG + chr4_4:46793185-46793204 Msa0683830:CDS 40.0%
TAAGTTTGCGCAAAGATGGT+GGG - chr4_4:46793575-46793594 None:intergenic 40.0%
TTAAGTTTGCGCAAAGATGG+TGG - chr4_4:46793576-46793595 None:intergenic 40.0%
GCGCAAACTTAACTTAGGTT+AGG + chr4_4:46793584-46793603 Msa0683830:three_prime_UTR 40.0%
! TGGTGCATTGTGTAACTTGT+TGG + chr4_4:46793678-46793697 Msa0683830:three_prime_UTR 40.0%
GGTTTCACTCAAAAGATTGG+AGG + chr4_4:46793699-46793718 Msa0683830:three_prime_UTR 40.0%
AGCACCTAATCCCAATGATT+TGG - chr4_4:46793742-46793761 None:intergenic 40.0%
TCTAGAAAGCTCATGTTCGT+GGG + chr4_4:46793790-46793809 Msa0683830:three_prime_UTR 40.0%
TCATGTTCGTGGGTGATTAA+AGG + chr4_4:46793800-46793819 Msa0683830:three_prime_UTR 40.0%
CGAAGGAAAGAGAGAGGAAT+AGG - chr4_4:46789593-46789612 None:intergenic 45.0%
CGTCGTAAAAATCTCCGGTT+AGG + chr4_4:46789624-46789643 Msa0683830:five_prime_UTR 45.0%
TCTGTACCATCGGAGATGAT+CGG - chr4_4:46789653-46789672 None:intergenic 45.0%
GGTTACACGATCTGTACCAT+CGG - chr4_4:46789663-46789682 None:intergenic 45.0%
!!! GGCCCTTCACAATTTTTTCG+TGG + chr4_4:46790216-46790235 Msa0683830:intron 45.0%
GGGCCACGAAAAAATTGTGA+AGG - chr4_4:46790222-46790241 None:intergenic 45.0%
GCCCGCGAAAAAAAATGTGA+GGG + chr4_4:46790357-46790376 Msa0683830:intron 45.0%
ATTCTCAACACTGCCCCAAA+AGG - chr4_4:46790486-46790505 None:intergenic 45.0%
! TTGGGGCAGTGTTGAGAATT+AGG + chr4_4:46790487-46790506 Msa0683830:intron 45.0%
!! GGATGAAGTGCTCTTTTGCA+TGG - chr4_4:46791220-46791239 None:intergenic 45.0%
! AGAGCACTTCATCCACATCA+AGG + chr4_4:46791226-46791245 Msa0683830:intron 45.0%
GAGCACTTCATCCACATCAA+GGG + chr4_4:46791227-46791246 Msa0683830:intron 45.0%
AAGAGAAAAGAAAAGGGGGC+CGG + chr4_4:46791293-46791312 Msa0683830:intron 45.0%
CTATGGGGTATAGAAGGGTT+TGG - chr4_4:46791442-46791461 None:intergenic 45.0%
CAAACCCTTCTATACCCCAT+AGG + chr4_4:46791440-46791459 Msa0683830:intron 45.0%
ATGCCCTATGGGGTATAGAA+GGG - chr4_4:46791447-46791466 None:intergenic 45.0%
AATGCCCTATGGGGTATAGA+AGG - chr4_4:46791448-46791467 None:intergenic 45.0%
! CTATACCCCATAGGGCATTA+TGG + chr4_4:46791449-46791468 Msa0683830:intron 45.0%
ACTTGAGGGAGCAATCATTG+AGG + chr4_4:46791473-46791492 Msa0683830:intron 45.0%
CTTCACCTATCCAAACTAGC+AGG + chr4_4:46791497-46791516 Msa0683830:intron 45.0%
! AGATCCCTGCTAGTTTGGAT+AGG - chr4_4:46791505-46791524 None:intergenic 45.0%
TGATCAGATCCCTGCTAGTT+TGG - chr4_4:46791510-46791529 None:intergenic 45.0%
GTGGTATAAGTTTCCCGACA+TGG - chr4_4:46791698-46791717 None:intergenic 45.0%
CAAGGGATTCTGGATGGTAA+AGG + chr4_4:46791870-46791889 Msa0683830:CDS 45.0%
TTCTGGATGGTAAAGGGATC+TGG + chr4_4:46791877-46791896 Msa0683830:CDS 45.0%
TCTGGATGGTAAAGGGATCT+GGG + chr4_4:46791878-46791897 Msa0683830:CDS 45.0%
TTCAGTGAAATTGACAGGCC+TGG - chr4_4:46792154-46792173 None:intergenic 45.0%
CAACTTCCCCATGATAGACA+TGG - chr4_4:46792407-46792426 None:intergenic 45.0%
AGACGAGATCTGGATCAACA+GGG + chr4_4:46792427-46792446 Msa0683830:CDS 45.0%
GACATTGCCATCCTTGTCAA+AGG - chr4_4:46792457-46792476 None:intergenic 45.0%
ACACCTTCCCTACTAATGTC+AGG + chr4_4:46792841-46792860 Msa0683830:CDS 45.0%
GTCAGGAGCTTGATATCTAC+TGG + chr4_4:46792858-46792877 Msa0683830:CDS 45.0%
TTATGGATGCAGGAACTTCG+TGG + chr4_4:46792992-46793011 Msa0683830:intron 45.0%
TGACTGACACCCACAAAGAT+AGG - chr4_4:46793035-46793054 None:intergenic 45.0%
AAACAGACTAACGGCTGCAT+AGG + chr4_4:46793401-46793420 Msa0683830:intron 45.0%
! CGTGAGCTTCAACGGATTTA+TGG + chr4_4:46793524-46793543 Msa0683830:CDS 45.0%
AAGTTTGCGCAAAGATGGTG+GGG - chr4_4:46793574-46793593 None:intergenic 45.0%
! CTCTAGAAAGCTCATGTTCG+TGG + chr4_4:46793789-46793808 Msa0683830:three_prime_UTR 45.0%
!! TAATTTCGGGGCACTGAACT+CGG + chr4_4:46793835-46793854 Msa0683830:three_prime_UTR 45.0%
AGAGAGGAATAGGGTGTGTG+AGG - chr4_4:46789583-46789602 None:intergenic 50.0%
GAAAGCCGAAGGAAAGAGAG+AGG - chr4_4:46789599-46789618 None:intergenic 50.0%
TCCGCCGTCGTAAAAATCTC+CGG + chr4_4:46789619-46789638 Msa0683830:five_prime_UTR 50.0%
! ACCGGAGATTTTTACGACGG+CGG - chr4_4:46789623-46789642 None:intergenic 50.0%
GAGATGATCGGAACCCTAAC+CGG - chr4_4:46789641-46789660 None:intergenic 50.0%
CCTGCAACACGAAACAACGT+AGG - chr4_4:46789945-46789964 None:intergenic 50.0%
! CCTACGTTGTTTCGTGTTGC+AGG + chr4_4:46789942-46789961 Msa0683830:intron 50.0%
GGCCCGCGAAAAAAAATGTG+AGG + chr4_4:46790356-46790375 Msa0683830:intron 50.0%
! GGGCAGTGTTGAGAATTAGG+CGG + chr4_4:46790490-46790509 Msa0683830:intron 50.0%
AGGGATCTCAATCGTTGGTG+AGG + chr4_4:46790597-46790616 Msa0683830:intron 50.0%
AGAGAAAAGAAAAGGGGGCC+GGG + chr4_4:46791294-46791313 Msa0683830:intron 50.0%
AGAACGTTACCTAGCATCCC+CGG - chr4_4:46791315-46791334 None:intergenic 50.0%
CTAGCAGGGATCTGATCACA+TGG + chr4_4:46791512-46791531 Msa0683830:intron 50.0%
TCCCGACATGGCAGAGTATA+GGG - chr4_4:46791686-46791705 None:intergenic 50.0%
TTCCCGACATGGCAGAGTAT+AGG - chr4_4:46791687-46791706 None:intergenic 50.0%
GCATGTTAGTGACAGAGAGC+CGG + chr4_4:46791900-46791919 Msa0683830:CDS 50.0%
AATACCTACGTTTCGGGCGA+TGG + chr4_4:46792177-46792196 Msa0683830:CDS 50.0%
! TCTGGAGCTTGCACATCACT+AGG - chr4_4:46792345-46792364 None:intergenic 50.0%
GAGACGAGATCTGGATCAAC+AGG + chr4_4:46792426-46792445 Msa0683830:CDS 50.0%
AACAGGGCAAGCCTTTGACA+AGG + chr4_4:46792443-46792462 Msa0683830:CDS 50.0%
!! TTGCCATAAGGGGTGCCAAA+CGG - chr4_4:46792525-46792544 None:intergenic 50.0%
!! TTGGTGGGTTCCCAGATGAA+CGG + chr4_4:46792610-46792629 Msa0683830:CDS 50.0%
AGATAGCACCCCGTTCATCT+GGG - chr4_4:46792623-46792642 None:intergenic 50.0%
GCTCCTGACATTAGTAGGGA+AGG - chr4_4:46792847-46792866 None:intergenic 50.0%
TCCTGTGAAGTATGTCTCGG+TGG + chr4_4:46792896-46792915 Msa0683830:CDS 50.0%
CAGCAACACGTGAGCTTCAA+CGG + chr4_4:46793516-46793535 Msa0683830:CDS 50.0%
!! CAAAGATGGTGGGGACTTAG+AGG - chr4_4:46793565-46793584 None:intergenic 50.0%
AGGGTTCCGATCATCTCCGA+TGG + chr4_4:46789644-46789663 Msa0683830:five_prime_UTR 55.0%
GAGAAAAGAAAAGGGGGCCG+GGG + chr4_4:46791295-46791314 Msa0683830:intron 55.0%
TGGCAGAGTATAGGGGGGAA+GGG - chr4_4:46791678-46791697 None:intergenic 55.0%
ATGGCAGAGTATAGGGGGGA+AGG - chr4_4:46791679-46791698 None:intergenic 55.0%
CGACATGGCAGAGTATAGGG+GGG - chr4_4:46791683-46791702 None:intergenic 55.0%
CCGACATGGCAGAGTATAGG+GGG - chr4_4:46791684-46791703 None:intergenic 55.0%
CCCCCTATACTCTGCCATGT+CGG + chr4_4:46791681-46791700 Msa0683830:intron 55.0%
CCCGACATGGCAGAGTATAG+GGG - chr4_4:46791685-46791704 None:intergenic 55.0%
CCCCTATACTCTGCCATGTC+GGG + chr4_4:46791682-46791701 Msa0683830:intron 55.0%
AGAACCATCGCCCGAAACGT+AGG - chr4_4:46792184-46792203 None:intergenic 55.0%
GGGGAAGTTGAGACGAGATC+TGG + chr4_4:46792417-46792436 Msa0683830:CDS 55.0%
GGGCAAGCCTTTGACAAGGA+TGG + chr4_4:46792447-46792466 Msa0683830:CDS 55.0%
ATGGGACTTGCCTATGGCAG+TGG + chr4_4:46792483-46792502 Msa0683830:CDS 55.0%
TGGGACTTGCCTATGGCAGT+GGG + chr4_4:46792484-46792503 Msa0683830:CDS 55.0%
GATGCCCGTATCAGACCGTT+TGG + chr4_4:46792507-46792526 Msa0683830:CDS 55.0%
GGTGCCAAACGGTCTGATAC+GGG - chr4_4:46792514-46792533 None:intergenic 55.0%
GGGTGCCAAACGGTCTGATA+CGG - chr4_4:46792515-46792534 None:intergenic 55.0%
AGACCGTTTGGCACCCCTTA+TGG + chr4_4:46792519-46792538 Msa0683830:CDS 55.0%
!! TGGTGGGTTCCCAGATGAAC+GGG + chr4_4:46792611-46792630 Msa0683830:CDS 55.0%
GAGATAGCACCCCGTTCATC+TGG - chr4_4:46792624-46792643 None:intergenic 55.0%
! TGAACGGGGTGCTATCTCTG+TGG + chr4_4:46792626-46792645 Msa0683830:intron 55.0%
! GAACGGGGTGCTATCTCTGT+GGG + chr4_4:46792627-46792646 Msa0683830:intron 55.0%
GCCACCGAGACATACTTCAC+AGG - chr4_4:46792900-46792919 None:intergenic 55.0%
TGAAGTATGTCTCGGTGGCG+CGG + chr4_4:46792901-46792920 Msa0683830:CDS 55.0%
GGGACTTGCCTATGGCAGTG+GGG + chr4_4:46792485-46792504 Msa0683830:CDS 60.0%
! GGTGGGTTCCCAGATGAACG+GGG + chr4_4:46792612-46792631 Msa0683830:CDS 60.0%
! GGGTGCTATCTCTGTGGGCA+GGG + chr4_4:46792632-46792651 Msa0683830:intron 60.0%
GAAGTATGTCTCGGTGGCGC+GGG + chr4_4:46792902-46792921 Msa0683830:CDS 60.0%
ACGACGGCGGAGAAAGCCGA+AGG - chr4_4:46789610-46789629 None:intergenic 65.0%
AAAAGGGGGCCGGGGATGCT+AGG + chr4_4:46791303-46791322 Msa0683830:intron 65.0%
ACGGGCATCCCCACTGCCAT+AGG - chr4_4:46792496-46792515 None:intergenic 65.0%
! GGGGTGCTATCTCTGTGGGC+AGG + chr4_4:46792631-46792650 Msa0683830:intron 65.0%
GTGGCGCGGGAGGTAAGTGT+TGG + chr4_4:46792915-46792934 Msa0683830:intron 65.0%
GTATGTCTCGGTGGCGCGGG+AGG + chr4_4:46792905-46792924 Msa0683830:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 46789515 46793940 46789515 ID=Msa0683830;Name=Msa0683830
chr4_4 mRNA 46789515 46793940 46789515 ID=Msa0683830-mRNA-1;Parent=Msa0683830;Name=Msa0683830-mRNA-1;_AED=0.11;_eAED=0.11;_QI=182|0.42|0.5|1|0.42|0.37|8|372|428
chr4_4 exon 46789515 46789726 46789515 ID=Msa0683830-mRNA-1:exon:11536;Parent=Msa0683830-mRNA-1
chr4_4 exon 46791859 46792059 46791859 ID=Msa0683830-mRNA-1:exon:11537;Parent=Msa0683830-mRNA-1
chr4_4 exon 46792081 46792326 46792081 ID=Msa0683830-mRNA-1:exon:11538;Parent=Msa0683830-mRNA-1
chr4_4 exon 46792387 46792633 46792387 ID=Msa0683830-mRNA-1:exon:11539;Parent=Msa0683830-mRNA-1
chr4_4 exon 46792694 46792926 46792694 ID=Msa0683830-mRNA-1:exon:11540;Parent=Msa0683830-mRNA-1
chr4_4 exon 46793004 46793069 46793004 ID=Msa0683830-mRNA-1:exon:11541;Parent=Msa0683830-mRNA-1
chr4_4 exon 46793173 46793371 46793173 ID=Msa0683830-mRNA-1:exon:11542;Parent=Msa0683830-mRNA-1
chr4_4 exon 46793504 46793940 46793504 ID=Msa0683830-mRNA-1:exon:11543;Parent=Msa0683830-mRNA-1
chr4_4 five_prime_UTR 46789515 46789696 46789515 ID=Msa0683830-mRNA-1:five_prime_utr;Parent=Msa0683830-mRNA-1
chr4_4 CDS 46789697 46789726 46789697 ID=Msa0683830-mRNA-1:cds;Parent=Msa0683830-mRNA-1
chr4_4 CDS 46791859 46792059 46791859 ID=Msa0683830-mRNA-1:cds;Parent=Msa0683830-mRNA-1
chr4_4 CDS 46792081 46792326 46792081 ID=Msa0683830-mRNA-1:cds;Parent=Msa0683830-mRNA-1
chr4_4 CDS 46792387 46792633 46792387 ID=Msa0683830-mRNA-1:cds;Parent=Msa0683830-mRNA-1
chr4_4 CDS 46792694 46792926 46792694 ID=Msa0683830-mRNA-1:cds;Parent=Msa0683830-mRNA-1
chr4_4 CDS 46793004 46793069 46793004 ID=Msa0683830-mRNA-1:cds;Parent=Msa0683830-mRNA-1
chr4_4 CDS 46793173 46793371 46793173 ID=Msa0683830-mRNA-1:cds;Parent=Msa0683830-mRNA-1
chr4_4 CDS 46793504 46793568 46793504 ID=Msa0683830-mRNA-1:cds;Parent=Msa0683830-mRNA-1
chr4_4 three_prime_UTR 46793569 46793940 46793569 ID=Msa0683830-mRNA-1:three_prime_utr;Parent=Msa0683830-mRNA-1
Gene Sequence

>Msa0683830

ATGCTATCAATTTTTTCACCATTTTCTAAGTCTTTACAAAACAAGGGATTCTGGATGGTAAAGGGATCTGGGCATGTTAGTGACAGAGAGCCGGCATTTGATAATCCTTCCAAAATCGAACCAAAACGACCTCATCAATGGTTAATTGATGCAACTGAAGGGGATTTTTTGCCAAACAAGAAGCAAGCAATAGAAGATGCAAATGAAAGATCTAGTTCAGGATTTTCAAATAACAATCACAATTTTCATTCAGACCCAAGCCACCAAAATCAATTAATTGATCGATTATTTGGGTCTGAAACCAGGCCTGTCAATTTCACTGAAAAAAATACCTACGTTTCGGGCGATGGTTCTGATGTGAGATCAAAGATGATCGCAAATCATTATGGAGATGGTGCATCTTTTGGCTTGTCTATATCTCATTCTACTGAAGATTCTGAACCATGTATGAATTTTGGGGGAATCAAGAAAGTCAAAAGTATGGGTGATCTACACCATGTCTATCATGGGGAAGTTGAGACGAGATCTGGATCAACAGGGCAAGCCTTTGACAAGGATGGCAATGTCATTTTAATGGGACTTGCCTATGGCAGTGGGGATGCCCGTATCAGACCGTTTGGCACCCCTTATGGCAAAGTAGATAACACAGTCCTATCCATTGCTGAATCTTATAATAAAGACGAGACAAATATAATTTCTTTTGGTGGGTTCCCAGATGAACGGGTTCATGTGTCAACAACAGCTCATGAGAAAGAGTTGGATACATCAAATTCTGATGTAGTTGCAAGTACTCCTTTGGTGACAACAAAAAAGCCTGAATCTATGTCCAAGAATAAACAAGATATCAAATCAACAAGGAAAGAATCTCCAAACACCTTCCCTACTAATGTCAGGAGCTTGATATCTACTGGTATGCTAGATGGTGTTCCTGTGAAGTATGTCTCGGTGGCGCGGGAGGAACTTCGTGGAATTATAAAAGGAACTACCTATCTTTGTGGGTGTCAGTCATGTAACTATTCCAAGGGTCTGAATGCTTTCGAGTTTGAAAAGCATGCTGGTTGCAAATCAAAACATCCAAACAATCACATTTATTTTGAGAATGGGAAGACCATTTATCAAATAGTACAGGAATTGAGGAGTACCCCTGAAAGTTCATTGTTTGACACAATCCAAACAATTTTTGGTGCACCAATAAATCAGAAAGCATTTCGCATTTGGAAAGAATCATTTCAAGCAGCAACACGTGAGCTTCAACGGATTTATGGAAATGAAAAACGTAACCTCTAA
Protein sequence

>Msa0683830

MLSIFSPFSKSLQNKGFWMVKGSGHVSDREPAFDNPSKIEPKRPHQWLIDATEGDFLPNKKQAIEDANERSSSGFSNNNHNFHSDPSHQNQLIDRLFGSETRPVNFTEKNTYVSGDGSDVRSKMIANHYGDGASFGLSISHSTEDSEPCMNFGGIKKVKSMGDLHHVYHGEVETRSGSTGQAFDKDGNVILMGLAYGSGDARIRPFGTPYGKVDNTVLSIAESYNKDETNIISFGGFPDERVHVSTTAHEKELDTSNSDVVASTPLVTTKKPESMSKNKQDIKSTRKESPNTFPTNVRSLISTGMLDGVPVKYVSVAREELRGIIKGTTYLCGCQSCNYSKGLNAFEFEKHAGCKSKHPNNHIYFENGKTIYQIVQELRSTPESSLFDTIQTIFGAPINQKAFRIWKESFQAATRELQRIYGNEKRNL*