AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0644020

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0644020 MtrunA17_Chr4g0030901 86.022 465 5 4 11 428 2 453 0.0 797
Msa0644020 MtrunA17_Chr1g0182221 37.711 533 204 13 11 420 2 529 9.28e-98 303
Msa0644020 MtrunA17_Chr7g0222931 36.784 541 211 15 11 425 2 537 1.97e-94 294
Msa0644020 MtrunA17_Chr1g0182481 46.377 138 73 1 281 417 242 379 3.81e-38 147
Msa0644020 MtrunA17_Chr7g0265211 33.835 133 85 2 274 403 228 360 1.41e-16 82.4
Msa0644020 MtrunA17_Chr2g0320451 33.945 109 66 1 293 395 226 334 1.90e-15 79.0
Msa0644020 MtrunA17_Chr1g0179841 33.594 128 81 1 280 403 82 209 2.37e-14 75.5
Msa0644020 MtrunA17_Chr2g0320431 32.110 109 68 1 293 395 23 131 4.90e-14 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0644020 AT5G59830.3 43.991 441 207 13 11 428 2 425 1.22e-113 340
Msa0644020 AT5G59830.1 43.991 441 207 13 11 428 2 425 1.22e-113 340
Msa0644020 AT5G59830.2 43.991 441 207 13 11 428 2 425 1.22e-113 340
Msa0644020 AT5G13660.2 60.265 151 58 1 280 428 385 535 8.99e-58 198
Msa0644020 AT5G13660.1 60.667 150 58 1 280 428 385 534 1.19e-57 198
Msa0644020 AT3G53680.2 41.808 177 94 4 243 411 126 301 2.25e-37 145
Msa0644020 AT3G53680.1 41.808 177 94 4 243 411 126 301 2.29e-37 145
Msa0644020 AT2G37520.1 46.565 131 69 1 292 421 171 301 2.34e-35 139
Msa0644020 AT5G13660.4 57.812 64 25 1 280 341 385 448 4.14e-16 80.5
Msa0644020 AT5G13660.6 58.730 63 25 1 280 341 385 447 5.77e-16 80.1
Msa0644020 AT5G13660.7 58.730 63 25 1 280 341 385 447 5.77e-16 80.1
Msa0644020 AT2G36720.1 37.000 100 60 1 294 390 261 360 7.02e-14 74.3
Msa0644020 AT2G36720.2 37.000 100 60 1 294 390 261 360 7.02e-14 74.3
Msa0644020 AT2G27980.1 27.485 171 101 5 238 402 338 491 2.01e-11 66.6

Find 135 sgRNAs with CRISPR-Local

Find 365 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATTAATTGATCGATTATT+TGG 0.067636 4_3:+47533598 Msa0644020:CDS
TCTGAACCATGTATGAATTT+TGG 0.091302 4_3:+47533763 Msa0644020:CDS
ATCGATCAATTAATTGATTT+TGG 0.128367 4_3:-47533591 None:intergenic
CGTGAGCTTCAACGGATTTA+TGG 0.136181 4_3:+47535003 Msa0644020:CDS
CGAAATGCTTTCTGATTTAT+TGG 0.172704 4_3:-47534816 None:intergenic
TTTGATATCTTGTTTATTCT+TGG 0.187546 4_3:-47534274 None:intergenic
GTGTCAAACAATGAACTTTC+AGG 0.198974 4_3:-47534771 None:intergenic
TTCCTGTACTATTTGATAAA+TGG 0.243583 4_3:-47534736 None:intergenic
TATGGAGATGGTGCATCTTT+TGG 0.252084 4_3:+47533712 Msa0644020:CDS
GAGCAAGACTTGTTAATTTC+GGG 0.270886 4_3:+47535301 Msa0644020:three_prime_UTR
CTTTACAAAACAAGGGATTC+TGG 0.272026 4_3:+47533338 Msa0644020:CDS
GGAGCAAGACTTGTTAATTT+CGG 0.278962 4_3:+47535300 Msa0644020:three_prime_UTR
ATCAGAAAGCATTTCGCATT+TGG 0.289716 4_3:+47534823 Msa0644020:CDS
AGACCGTTTGGCACCCCTTA+TGG 0.301042 4_3:+47533997 Msa0644020:CDS
TCTATTGCTTGCTTCTTGTT+TGG 0.301219 4_3:-47533478 None:intergenic
TTGTTTAGCTCTGTGACTTT+TGG 0.301431 4_3:+47535137 Msa0644020:three_prime_UTR
TCAAAATAAATGTGATTGTT+TGG 0.311141 4_3:-47534702 None:intergenic
GAACTTCGTGGAATTATAAA+AGG 0.315503 4_3:+47534482 Msa0644020:CDS
TCATGTTCGTGGGTGATTAA+AGG 0.319909 4_3:+47535279 Msa0644020:three_prime_UTR
AACCATTGATGAGGTCGTTT+TGG 0.320545 4_3:-47533427 None:intergenic
AAGGGATTCTGGATGGTAAA+AGG 0.325602 4_3:+47533349 Msa0644020:CDS
GAGATAGCACCCCGTTCATC+TGG 0.326401 4_3:-47534099 None:intergenic
CGAAGGAAAGAGAGAGGAAT+AGG 0.330377 4_3:-47531046 None:intergenic
GAGACAAATATAATTTCTTT+TGG 0.334047 4_3:+47534069 Msa0644020:CDS
AAGATGATCGCAAATCATTA+TGG 0.336592 4_3:+47533694 Msa0644020:CDS
AGCACCTAATCCCAATGATT+TGG 0.339666 4_3:-47535218 None:intergenic
TGTTATCTACTTTGCCATAA+GGG 0.349075 4_3:-47534011 None:intergenic
ATGTCCAAATCATTGGGATT+AGG 0.354920 4_3:+47535214 Msa0644020:three_prime_UTR
TAAGCGGTTACCTTAGAAAA+TGG 0.360905 4_3:-47531171 None:intergenic
GTAACTTATGTCCAAATCAT+TGG 0.363263 4_3:+47535207 Msa0644020:three_prime_UTR
TTATTCTTGGACATAGATTC+AGG 0.367033 4_3:-47534261 None:intergenic
TCATCTAGGTAGGTGGTAAT+AGG 0.369142 4_3:-47530997 None:intergenic
TGGTGGGTTCCCAGATGAAC+GGG 0.370149 4_3:+47534089 Msa0644020:CDS
TGGTGCATTGTGTAACTTGT+TGG 0.377027 4_3:+47535157 Msa0644020:three_prime_UTR
TTCTGGATGGTAAAAGGATC+TGG 0.378698 4_3:+47533355 Msa0644020:CDS
GTTGGTTTCACTCAAAAGAT+TGG 0.382596 4_3:+47535175 Msa0644020:three_prime_UTR
GAGACGAGATCTGGATCAAC+AGG 0.382783 4_3:+47533904 Msa0644020:CDS
CTATTCCTCTCTCTTTCCTT+CGG 0.386939 4_3:+47531047 Msa0644020:five_prime_UTR
ATCAAGCTCCTGACATTAGT+AGG 0.391092 4_3:-47534327 None:intergenic
AATTAATTGATCGATTATTT+GGG 0.397385 4_3:+47533599 Msa0644020:CDS
GTGTTATCTACTTTGCCATA+AGG 0.399952 4_3:-47534012 None:intergenic
ACATTAGTAGGGAAGGTGTT+TGG 0.404286 4_3:-47534315 None:intergenic
CAAAGATGGTGGGGACTTAG+AGG 0.407569 4_3:-47535041 None:intergenic
GCGCAAACTTAACTTAGGTT+AGG 0.418573 4_3:+47535063 Msa0644020:three_prime_UTR
GAGATGATCGGAACCCTAAC+CGG 0.420588 4_3:-47531094 None:intergenic
GGGGAAGTTGAGACGAGATC+TGG 0.422910 4_3:+47533895 Msa0644020:CDS
ATCAAATAGTACAGGAATTG+AGG 0.425574 4_3:+47534742 Msa0644020:CDS
AATACCTACGTTTCGGGCGA+TGG 0.429341 4_3:+47533655 Msa0644020:CDS
CCACGAGATTTCCTCAATTG+AGG 0.431996 4_3:+47530967 None:intergenic
TAACTTATGTCCAAATCATT+GGG 0.436654 4_3:+47535208 Msa0644020:three_prime_UTR
AAAGGAACTACCTATCTTTG+TGG 0.443908 4_3:+47534500 Msa0644020:CDS
CTTGCAGTCTTTACAAAACA+AGG 0.446967 4_3:+47533330 Msa0644020:intron
TGACTGACACCCACAAAGAT+AGG 0.451929 4_3:-47534510 None:intergenic
ATATCTACTGGTATGCTAGA+TGG 0.454824 4_3:+47534348 Msa0644020:CDS
GATGCCCGTATCAGACCGTT+TGG 0.458600 4_3:+47533985 Msa0644020:CDS
GCAAATGAAAGATCTAGTTC+AGG 0.460327 4_3:+47533505 Msa0644020:CDS
TAATTTCGGGGCACTGAACT+CGG 0.466461 4_3:+47535314 Msa0644020:three_prime_UTR
ATGGGACTTGCCTATGGCAG+TGG 0.470833 4_3:+47533961 Msa0644020:CDS
TCTTTGCGCAAACTTAACTT+AGG 0.471362 4_3:+47535058 Msa0644020:three_prime_UTR
TTCAGTGAAATTGACAGGCC+TGG 0.472169 4_3:-47533629 None:intergenic
GGGTGCCAAACGGTCTGATA+CGG 0.474649 4_3:-47533990 None:intergenic
GTCAGGAGCTTGATATCTAC+TGG 0.476574 4_3:+47534336 Msa0644020:CDS
GAAGGAAAGAGAGAGGAATA+GGG 0.478845 4_3:-47531045 None:intergenic
TTGGTGGGTTCCCAGATGAA+CGG 0.479213 4_3:+47534088 Msa0644020:CDS
GATCTACACCATGTCTATCA+TGG 0.482318 4_3:+47533874 Msa0644020:CDS
TGTCAAACAATGAACTTTCA+GGG 0.482656 4_3:-47534770 None:intergenic
CTCTAGAAAGCTCATGTTCG+TGG 0.485379 4_3:+47535268 Msa0644020:three_prime_UTR
TGTAGTTGCAAGTACTCCTT+TGG 0.489839 4_3:+47534224 Msa0644020:CDS
AAGTTAAGTTTGCGCAAAGA+TGG 0.494942 4_3:-47535055 None:intergenic
GATTATTTGGGTCTGAAACC+AGG 0.501220 4_3:+47533611 Msa0644020:CDS
TTATGGATGCAGGAACTTCG+TGG 0.502569 4_3:+47534470 Msa0644020:intron
ATCTACACCATGTCTATCAT+GGG 0.502576 4_3:+47533875 Msa0644020:CDS
TTGGAAGGATTATCAAATGC+CGG 0.504114 4_3:-47533397 None:intergenic
AGAGAGGAATAGGGTGTGTG+AGG 0.506327 4_3:-47531036 None:intergenic
CAGCAACACGTGAGCTTCAA+CGG 0.506790 4_3:+47534995 Msa0644020:CDS
GAAGTATGTCTCGGTGGCGC+GGG 0.512915 4_3:+47534380 Msa0644020:CDS
ACGGGCATCCCCACTGCCAT+AGG 0.513675 4_3:-47533971 None:intergenic
AAGGAACTACCTATCTTTGT+GGG 0.520214 4_3:+47534501 Msa0644020:CDS
TATAAGATTCAGCAATGGAT+AGG 0.522976 4_3:-47534038 None:intergenic
GTTATCTACTTTGCCATAAG+GGG 0.524676 4_3:-47534010 None:intergenic
GGTTTCACTCAAAAGATTGG+AGG 0.526129 4_3:+47535178 Msa0644020:three_prime_UTR
GACCATTTATCAAATAGTAC+AGG 0.526696 4_3:+47534734 Msa0644020:CDS
TGAAGTATGTCTCGGTGGCG+CGG 0.530846 4_3:+47534379 Msa0644020:CDS
AACCAAAACGACCTCATCAA+TGG 0.536411 4_3:+47533425 Msa0644020:CDS
GACATTGCCATCCTTGTCAA+AGG 0.543189 4_3:-47533932 None:intergenic
TTGCCATAAGGGGTGCCAAA+CGG 0.546220 4_3:-47534000 None:intergenic
TAAGTTTGCGCAAAGATGGT+GGG 0.548142 4_3:-47535051 None:intergenic
TGGGACTTGCCTATGGCAGT+GGG 0.549439 4_3:+47533962 Msa0644020:CDS
GGTGCCAAACGGTCTGATAC+GGG 0.551701 4_3:-47533989 None:intergenic
AAAGCATTTCGCATTTGGAA+AGG 0.553389 4_3:+47534828 Msa0644020:CDS
TGGTTAATTGATGCAACTGA+AGG 0.554560 4_3:+47533445 Msa0644020:CDS
AACAGCTCATGAGAAAGAGT+TGG 0.557874 4_3:+47534185 Msa0644020:CDS
ACACCTTCCCTACTAATGTC+AGG 0.559082 4_3:+47534319 Msa0644020:CDS
TTAAGTTTGCGCAAAGATGG+TGG 0.560921 4_3:-47535052 None:intergenic
ATCGCAAATCATTATGGAGA+TGG 0.565757 4_3:+47533700 Msa0644020:CDS
TTCGAGTTTGAAAAGCATGC+TGG 0.566420 4_3:+47534663 Msa0644020:CDS
GGGCAAGCCTTTGACAAGGA+TGG 0.567272 4_3:+47533925 Msa0644020:CDS
GGTTAATTGATGCAACTGAA+GGG 0.567822 4_3:+47533446 Msa0644020:CDS
AATTGATAGCATTATAGAAG+CGG 0.574748 4_3:-47531142 None:intergenic
GAAAGCCGAAGGAAAGAGAG+AGG 0.575601 4_3:-47531052 None:intergenic
GCATGTTAGTGACAGAGAGC+CGG 0.576985 4_3:+47533378 Msa0644020:CDS
GTATGTCTCGGTGGCGCGGG+AGG 0.577134 4_3:+47534383 Msa0644020:CDS
TCTGGATGGTAAAAGGATCT+GGG 0.577994 4_3:+47533356 Msa0644020:CDS
TAGGATATGAACCTCAATTG+AGG 0.578513 4_3:-47530978 None:intergenic
ACAAAACAAGGGATTCTGGA+TGG 0.579040 4_3:+47533342 Msa0644020:CDS
GTTAATTGATGCAACTGAAG+GGG 0.584842 4_3:+47533447 Msa0644020:CDS
AGAACCATCGCCCGAAACGT+AGG 0.586722 4_3:-47533659 None:intergenic
TCAAGCTCCTGACATTAGTA+GGG 0.592776 4_3:-47534326 None:intergenic
GCTCCTGACATTAGTAGGGA+AGG 0.594371 4_3:-47534322 None:intergenic
AGATAGCACCCCGTTCATCT+GGG 0.596404 4_3:-47534098 None:intergenic
TTCAAATACACAAGAAAACT+CGG 0.599516 4_3:+47535370 Msa0644020:three_prime_UTR
TTGCAGTCTTTACAAAACAA+GGG 0.608181 4_3:+47533331 Msa0644020:intron
TTTATTATAAGATTCAGCAA+TGG 0.610633 4_3:-47534043 None:intergenic
AGCAAGACTTGTTAATTTCG+GGG 0.610779 4_3:+47535302 Msa0644020:three_prime_UTR
TCTAGAAAGCTCATGTTCGT+GGG 0.612589 4_3:+47535269 Msa0644020:three_prime_UTR
CAACTTCCCCATGATAGACA+TGG 0.618862 4_3:-47533882 None:intergenic
TCTGTACCATCGGAGATGAT+CGG 0.619826 4_3:-47531106 None:intergenic
GCATCAATTAACCATTGATG+AGG 0.620118 4_3:-47533436 None:intergenic
TCAGTCATGTAACTATTCCA+AGG 0.620903 4_3:+47534526 Msa0644020:CDS
GCCACCGAGACATACTTCAC+AGG 0.621034 4_3:-47534375 None:intergenic
ATAGCATTATAGAAGCGGAA+TGG 0.623880 4_3:-47531137 None:intergenic
GTCAAACAATGAACTTTCAG+GGG 0.632047 4_3:-47534769 None:intergenic
AGGGTTCCGATCATCTCCGA+TGG 0.636826 4_3:+47531100 Msa0644020:five_prime_UTR
GGTTACACGATCTGTACCAT+CGG 0.638882 4_3:-47531116 None:intergenic
ACGGCGGCGGAGAAAGCCGA+AGG 0.646765 4_3:-47531063 None:intergenic
AACAGGGCAAGCCTTTGACA+AGG 0.649294 4_3:+47533921 Msa0644020:CDS
AAGTTTGCGCAAAGATGGTG+GGG 0.650497 4_3:-47535050 None:intergenic
GGTGGGTTCCCAGATGAACG+GGG 0.659474 4_3:+47534090 Msa0644020:CDS
CTAAAATCCATCAACCCATG+AGG 0.676039 4_3:-47535411 None:intergenic
GGGACTTGCCTATGGCAGTG+GGG 0.687403 4_3:+47533963 Msa0644020:CDS
TGTTCCTGTGAAGTATGTCT+CGG 0.693290 4_3:+47534371 Msa0644020:CDS
TCCTGTGAAGTATGTCTCGG+TGG 0.694815 4_3:+47534374 Msa0644020:CDS
TCTACACCATGTCTATCATG+GGG 0.701654 4_3:+47533876 Msa0644020:CDS
AACAAGATATCAAATCAACA+AGG 0.715980 4_3:+47534283 Msa0644020:CDS
AGACGAGATCTGGATCAACA+GGG 0.736721 4_3:+47533905 Msa0644020:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAACATTAAATCTAAAAAA+GGG - chr4_3:47532503-47532522 None:intergenic 10.0%
!! AAAAAAAAAAAAAAACAACT+TGG - chr4_3:47533195-47533214 None:intergenic 10.0%
!!! TAAATTCTATGAATTTTGTT+TGG + chr4_3:47531252-47531271 Msa0644020:intron 15.0%
!! AATTAATTAATTAAGAAGAG+TGG - chr4_3:47531367-47531386 None:intergenic 15.0%
!!! TTTATTTTTTGTCATTGAAT+TGG + chr4_3:47531810-47531829 Msa0644020:intron 15.0%
!!! ATTTTTTAGAGTAAAATTTG+AGG + chr4_3:47532052-47532071 Msa0644020:intron 15.0%
!!! TTTTTTAGAGTAAAATTTGA+GGG + chr4_3:47532053-47532072 Msa0644020:intron 15.0%
!! CTAAACATTAAATCTAAAAA+AGG - chr4_3:47532504-47532523 None:intergenic 15.0%
!!! TCTTTTTTTTAAATGTTCTT+GGG - chr4_3:47533048-47533067 None:intergenic 15.0%
!!! TTCTTTTTTTTAAATGTTCT+TGG - chr4_3:47533049-47533068 None:intergenic 15.0%
!!! ATTTTATACAATGCAATAAT+AGG + chr4_3:47533124-47533143 Msa0644020:intron 15.0%
!! AATTAATTGATCGATTATTT+GGG + chr4_3:47533599-47533618 Msa0644020:CDS 15.0%
!! TAAAGGAATATAACTTATAA+AGG - chr4_3:47534453-47534472 None:intergenic 15.0%
!! TTATAAGTTATATTCCTTTA+TGG + chr4_3:47534453-47534472 Msa0644020:intron 15.0%
!! TAATATAAAACATCAATCAA+AGG - chr4_3:47534627-47534646 None:intergenic 15.0%
!!! ATTGATGTTTTATATTATCA+GGG + chr4_3:47534630-47534649 Msa0644020:intron 15.0%
!!! AAATGTTGAATTTTATTGTT+TGG + chr4_3:47534902-47534921 Msa0644020:intron 15.0%
!!! AATGTTGAATTTTATTGTTT+GGG + chr4_3:47534903-47534922 Msa0644020:intron 15.0%
!! AAGACAAATAAAAATGTTAT+AGG - chr4_3:47535352-47535371 None:intergenic 15.0%
!!! AATTTTTTCACCATTTTCTA+AGG + chr4_3:47531161-47531180 Msa0644020:CDS 20.0%
!!! TTCAAGTTATAAACTTTCTA+AGG - chr4_3:47531444-47531463 None:intergenic 20.0%
!! ATATTGTTAGTTATGTTAAG+AGG + chr4_3:47531655-47531674 Msa0644020:intron 20.0%
!! TATTGTTAGTTATGTTAAGA+GGG + chr4_3:47531656-47531675 Msa0644020:intron 20.0%
!!! AGTCTATGACATTTTAATAA+TGG + chr4_3:47531750-47531769 Msa0644020:intron 20.0%
!! TTGTGTTAATGTTAATATGA+TGG + chr4_3:47531875-47531894 Msa0644020:intron 20.0%
!! TGTGTTAATGTTAATATGAT+GGG + chr4_3:47531876-47531895 Msa0644020:intron 20.0%
!! TTGGATAAACAATTTAAATG+AGG + chr4_3:47532326-47532345 Msa0644020:intron 20.0%
!! TGGATAAACAATTTAAATGA+GGG + chr4_3:47532327-47532346 Msa0644020:intron 20.0%
!! TATGAATTTCTTAATTGATG+AGG + chr4_3:47532425-47532444 Msa0644020:intron 20.0%
!! ATTGCATTGTATAAAATACA+AGG - chr4_3:47533121-47533140 None:intergenic 20.0%
!! AAAAAAAAAAAACAACTTGG+TGG - chr4_3:47533192-47533211 None:intergenic 20.0%
!!! ATCGATCAATTAATTGATTT+TGG - chr4_3:47533594-47533613 None:intergenic 20.0%
!! CAATTAATTGATCGATTATT+TGG + chr4_3:47533598-47533617 Msa0644020:CDS 20.0%
!! TTTATTATAAGATTCAGCAA+TGG - chr4_3:47534046-47534065 None:intergenic 20.0%
!!! GAGACAAATATAATTTCTTT+TGG + chr4_3:47534069-47534088 Msa0644020:CDS 20.0%
!!! ACAAATATAATTTCTTTTGG+TGG + chr4_3:47534072-47534091 Msa0644020:CDS 20.0%
!!! CAAATATAATTTCTTTTGGT+GGG + chr4_3:47534073-47534092 Msa0644020:CDS 20.0%
!!! TTTGATATCTTGTTTATTCT+TGG - chr4_3:47534277-47534296 None:intergenic 20.0%
!! AAAACCATTATTAAGATGTT+TGG - chr4_3:47534579-47534598 None:intergenic 20.0%
!!! GATTGATGTTTTATATTATC+AGG + chr4_3:47534629-47534648 Msa0644020:intron 20.0%
!! TCAAAATAAATGTGATTGTT+TGG - chr4_3:47534705-47534724 None:intergenic 20.0%
!!! AATCACATTTATTTTGAGAA+TGG + chr4_3:47534708-47534727 Msa0644020:CDS 20.0%
!!! ATCACATTTATTTTGAGAAT+GGG + chr4_3:47534709-47534728 Msa0644020:CDS 20.0%
!! AATTGATAGCATTATAGAAG+CGG - chr4_3:47531145-47531164 None:intergenic 25.0%
!!! AAATCTATAGTGGATTTTTC+AGG + chr4_3:47531473-47531492 Msa0644020:intron 25.0%
! AAAATGTCATAGACTAATCT+GGG - chr4_3:47531745-47531764 None:intergenic 25.0%
! TAAAATGTCATAGACTAATC+TGG - chr4_3:47531746-47531765 None:intergenic 25.0%
!!! CTATGTTTGTTATCTGAAAT+TGG + chr4_3:47531899-47531918 Msa0644020:intron 25.0%
! AACTATCAATCAGAAATCAA+GGG - chr4_3:47532162-47532181 None:intergenic 25.0%
!!! CACTTTTTCTTCTTCTAAAT+TGG + chr4_3:47532191-47532210 Msa0644020:intron 25.0%
! AGTCAAATGCATATCATTAA+GGG + chr4_3:47532231-47532250 Msa0644020:intron 25.0%
! TAAGATATTATGCTTCTGTT+TGG + chr4_3:47532307-47532326 Msa0644020:intron 25.0%
!!! AATGGATTGTGATAAAAGAA+AGG + chr4_3:47532360-47532379 Msa0644020:intron 25.0%
! CTAATTTAAATGAGCTAGTT+AGG + chr4_3:47532397-47532416 Msa0644020:intron 25.0%
! AAATTTGAGGGATAAATCAT+AGG + chr4_3:47532454-47532473 Msa0644020:intron 25.0%
! AGACAGTGATAAGTTAATAA+TGG - chr4_3:47533018-47533037 None:intergenic 25.0%
! TATTAACTTATCACTGTCTA+AGG + chr4_3:47533019-47533038 Msa0644020:intron 25.0%
!! AAATGTAAATTTTACTCCGT+GGG + chr4_3:47533534-47533553 Msa0644020:intron 25.0%
!!! GATCAATTAATTGATTTTGG+TGG - chr4_3:47533591-47533610 None:intergenic 25.0%
!!! TTTTTTTCAGTGAAATTGAC+AGG - chr4_3:47533637-47533656 None:intergenic 25.0%
! TGAAAAAAATACCTACGTTT+CGG + chr4_3:47533648-47533667 Msa0644020:CDS 25.0%
! AACAAGATATCAAATCAACA+AGG + chr4_3:47534283-47534302 Msa0644020:CDS 25.0%
! TTCCTGTACTATTTGATAAA+TGG - chr4_3:47534739-47534758 None:intergenic 25.0%
! GCAAGAGTTACAAAAAAAAT+GGG - chr4_3:47534950-47534969 None:intergenic 25.0%
! TAACTTATGTCCAAATCATT+GGG + chr4_3:47535208-47535227 Msa0644020:three_prime_UTR 25.0%
! TTCAAATACACAAGAAAACT+CGG + chr4_3:47535370-47535389 Msa0644020:three_prime_UTR 25.0%
!!! AATATTTTAGTTGTTCCTCA+TGG + chr4_3:47535396-47535415 Msa0644020:three_prime_UTR 25.0%
!! AATTAAGAAGAGTGGATTAG+TGG - chr4_3:47531359-47531378 None:intergenic 30.0%
AGTGAAGAACAAATCTATAG+TGG + chr4_3:47531463-47531482 Msa0644020:intron 30.0%
! GTTATCTGAAATTGGAATTG+AGG + chr4_3:47531907-47531926 Msa0644020:intron 30.0%
! ATGCTTCATGTTTTCCTTTT+GGG + chr4_3:47531944-47531963 Msa0644020:intron 30.0%
!!! CATTCTACGATCTTATTTTG+AGG + chr4_3:47532029-47532048 Msa0644020:intron 30.0%
CAACTATCAATCAGAAATCA+AGG - chr4_3:47532163-47532182 None:intergenic 30.0%
! CTTGATTTCTGATTGATAGT+TGG + chr4_3:47532161-47532180 Msa0644020:intron 30.0%
!! TTTGACTCCTCTAAAGTAAA+GGG - chr4_3:47532218-47532237 None:intergenic 30.0%
!! ATTTGACTCCTCTAAAGTAA+AGG - chr4_3:47532219-47532238 None:intergenic 30.0%
GAGTCAAATGCATATCATTA+AGG + chr4_3:47532230-47532249 Msa0644020:intron 30.0%
CAATTTAAATGAGGGCTTAA+AGG + chr4_3:47532335-47532354 Msa0644020:intron 30.0%
GAATTTCTTAATTGATGAGG+AGG + chr4_3:47532428-47532447 Msa0644020:intron 30.0%
TTTGATTATGTCACACAACT+AGG - chr4_3:47532556-47532575 None:intergenic 30.0%
CAGAAAAGAAGATAAACTGA+AGG - chr4_3:47532579-47532598 None:intergenic 30.0%
GTTGAAATGTAATAGAAGCA+TGG + chr4_3:47532745-47532764 Msa0644020:intron 30.0%
! ATGATTTTCCACATTTCCTT+TGG - chr4_3:47532855-47532874 None:intergenic 30.0%
! GGGATAAAACTCATTCTTTT+TGG - chr4_3:47532882-47532901 None:intergenic 30.0%
TATAAAATACAAGGCGAAGA+GGG - chr4_3:47533112-47533131 None:intergenic 30.0%
TTAATCAATCCAACTGACAT+AGG - chr4_3:47533240-47533259 None:intergenic 30.0%
TTGCAGTCTTTACAAAACAA+GGG + chr4_3:47533331-47533350 Msa0644020:intron 30.0%
! CAAATGTAAATTTTACTCCG+TGG + chr4_3:47533533-47533552 Msa0644020:intron 30.0%
!! TTAATTGATTTTGGTGGCTT+GGG - chr4_3:47533585-47533604 None:intergenic 30.0%
!! ATTAATTGATTTTGGTGGCT+TGG - chr4_3:47533586-47533605 None:intergenic 30.0%
GAAAAAAATACCTACGTTTC+GGG + chr4_3:47533649-47533668 Msa0644020:CDS 30.0%
AAGATGATCGCAAATCATTA+TGG + chr4_3:47533694-47533713 Msa0644020:CDS 30.0%
! TCTGAACCATGTATGAATTT+TGG + chr4_3:47533763-47533782 Msa0644020:CDS 30.0%
! CTGAACCATGTATGAATTTT+GGG + chr4_3:47533764-47533783 Msa0644020:CDS 30.0%
! TGAACCATGTATGAATTTTG+GGG + chr4_3:47533765-47533784 Msa0644020:CDS 30.0%
CAAGAAAGTCAAAGTAAATC+AGG + chr4_3:47533792-47533811 Msa0644020:intron 30.0%
!!! GATGGCAATGTCATTTTAAT+GGG + chr4_3:47533943-47533962 Msa0644020:CDS 30.0%
TGTTATCTACTTTGCCATAA+GGG - chr4_3:47534014-47534033 None:intergenic 30.0%
TATAAGATTCAGCAATGGAT+AGG - chr4_3:47534041-47534060 None:intergenic 30.0%
TTATTCTTGGACATAGATTC+AGG - chr4_3:47534264-47534283 None:intergenic 30.0%
TTATATTCCTTTATGGATGC+AGG + chr4_3:47534460-47534479 Msa0644020:intron 30.0%
GAACTTCGTGGAATTATAAA+AGG + chr4_3:47534482-47534501 Msa0644020:CDS 30.0%
CTGACCAAACATCTTAATAA+TGG + chr4_3:47534572-47534591 Msa0644020:intron 30.0%
ATCAATCAAAGGTAATCTAC+AGG - chr4_3:47534616-47534635 None:intergenic 30.0%
GACCATTTATCAAATAGTAC+AGG + chr4_3:47534734-47534753 Msa0644020:CDS 30.0%
ATCAAATAGTACAGGAATTG+AGG + chr4_3:47534742-47534761 Msa0644020:CDS 30.0%
TGTCAAACAATGAACTTTCA+GGG - chr4_3:47534773-47534792 None:intergenic 30.0%
! GACACAATCCAAACAATTTT+TGG + chr4_3:47534789-47534808 Msa0644020:CDS 30.0%
CGAAATGCTTTCTGATTTAT+TGG - chr4_3:47534819-47534838 None:intergenic 30.0%
TAGTCTGTTTGTGCTTAAAA+AGG - chr4_3:47534869-47534888 None:intergenic 30.0%
TTTAAGCACAAACAGACTAA+CGG + chr4_3:47534870-47534889 Msa0644020:intron 30.0%
!! TTTTATTGTTTGGGCTTGTT+TGG + chr4_3:47534912-47534931 Msa0644020:intron 30.0%
GGCAAGAGTTACAAAAAAAA+TGG - chr4_3:47534951-47534970 None:intergenic 30.0%
!!! TTTTTTGTAACTCTTGCCAA+TGG + chr4_3:47534953-47534972 Msa0644020:intron 30.0%
GTAACTTATGTCCAAATCAT+TGG + chr4_3:47535207-47535226 Msa0644020:three_prime_UTR 30.0%
TAGGATATGAACCTCAATTG+AGG - chr4_3:47530981-47531000 None:intergenic 35.0%
!!! TTTTTTCTCATCTAGGTAGG+TGG - chr4_3:47531007-47531026 None:intergenic 35.0%
!!! CGATTTTTTCTCATCTAGGT+AGG - chr4_3:47531010-47531029 None:intergenic 35.0%
!!! CACTCGATTTTTTCTCATCT+AGG - chr4_3:47531014-47531033 None:intergenic 35.0%
ATAGCATTATAGAAGCGGAA+TGG - chr4_3:47531140-47531159 None:intergenic 35.0%
TAAGCGGTTACCTTAGAAAA+TGG - chr4_3:47531174-47531193 None:intergenic 35.0%
GCTCAAGAATTATGAGTAAG+CGG - chr4_3:47531190-47531209 None:intergenic 35.0%
CTGCAACAAAGAAACAACAT+AGG - chr4_3:47531419-47531438 None:intergenic 35.0%
!! CTATGTTGTTTCTTTGTTGC+AGG + chr4_3:47531417-47531436 Msa0644020:intron 35.0%
! CCATTTGATTCAACTTTTGC+AGG - chr4_3:47531510-47531529 None:intergenic 35.0%
CCTGCAAAAGTTGAATCAAA+TGG + chr4_3:47531507-47531526 Msa0644020:intron 35.0%
AAATTGTGAAGGGCCAAATT+GGG - chr4_3:47531686-47531705 None:intergenic 35.0%
AAAATTGTGAAGGGCCAAAT+TGG - chr4_3:47531687-47531706 None:intergenic 35.0%
!!! AATTTTTTCGTGGCCCAATT+CGG + chr4_3:47531701-47531720 Msa0644020:intron 35.0%
! TTGTTGTTAGAGACCGAATT+GGG - chr4_3:47531717-47531736 None:intergenic 35.0%
!! TTTGTTGTTAGAGACCGAAT+TGG - chr4_3:47531718-47531737 None:intergenic 35.0%
ACAAATTAGTCCCTATGTCA+GGG + chr4_3:47531775-47531794 Msa0644020:intron 35.0%
CAAATTATTCCCCTGACATA+GGG - chr4_3:47531788-47531807 None:intergenic 35.0%
CTATGTCAGGGGAATAATTT+GGG + chr4_3:47531787-47531806 Msa0644020:intron 35.0%
! GATGCTTCATGTTTTCCTTT+TGG + chr4_3:47531943-47531962 Msa0644020:intron 35.0%
! TGCTTCATGTTTTCCTTTTG+GGG + chr4_3:47531945-47531964 Msa0644020:intron 35.0%
TAGACGAGACAAAAATGAGA+TGG + chr4_3:47531998-47532017 Msa0644020:intron 35.0%
AGACGAGACAAAAATGAGAT+GGG + chr4_3:47531999-47532018 Msa0644020:intron 35.0%
TCAATCAGAAATCAAGGGTT+TGG - chr4_3:47532157-47532176 None:intergenic 35.0%
AATTGGACCCTTTACTTTAG+AGG + chr4_3:47532208-47532227 Msa0644020:intron 35.0%
CATGACAGGCTTCATATAAT+TGG + chr4_3:47532254-47532273 Msa0644020:intron 35.0%
AATGAGGGCTTAAAGGAAAA+TGG + chr4_3:47532342-47532361 Msa0644020:intron 35.0%
TGTCACAGTCATATGTCATT+TGG + chr4_3:47532621-47532640 Msa0644020:intron 35.0%
AGCATGGAAGAGAAAAGAAA+AGG + chr4_3:47532761-47532780 Msa0644020:intron 35.0%
GCATGGAAGAGAAAAGAAAA+GGG + chr4_3:47532762-47532781 Msa0644020:intron 35.0%
CATGGAAGAGAAAAGAAAAG+GGG + chr4_3:47532763-47532782 Msa0644020:intron 35.0%
ATGGAAGAGAAAAGAAAAGG+GGG + chr4_3:47532764-47532783 Msa0644020:intron 35.0%
TAACGTTCTACCATACAACT+AGG + chr4_3:47532801-47532820 Msa0644020:intron 35.0%
CCTATTGAATCCTAGTTGTA+TGG - chr4_3:47532814-47532833 None:intergenic 35.0%
CCATACAACTAGGATTCAAT+AGG + chr4_3:47532811-47532830 Msa0644020:intron 35.0%
GGAATTTACCAAAGGAAATG+TGG + chr4_3:47532844-47532863 Msa0644020:intron 35.0%
!! GGGTTTGGTGAGTATAAAAT+GGG - chr4_3:47532902-47532921 None:intergenic 35.0%
!! AGGGTTTGGTGAGTATAAAA+TGG - chr4_3:47532903-47532922 None:intergenic 35.0%
TTCACCTATCCAAACTAGTA+GGG + chr4_3:47532973-47532992 Msa0644020:intron 35.0%
ATAAAATACAAGGCGAAGAG+GGG - chr4_3:47533111-47533130 None:intergenic 35.0%
GTATAAAATACAAGGCGAAG+AGG - chr4_3:47533113-47533132 None:intergenic 35.0%
ATCCAACTGACATAGGATAA+AGG - chr4_3:47533233-47533252 None:intergenic 35.0%
CTTGCAGTCTTTACAAAACA+AGG + chr4_3:47533330-47533349 Msa0644020:intron 35.0%
CTTTACAAAACAAGGGATTC+TGG + chr4_3:47533338-47533357 Msa0644020:CDS 35.0%
TTGGAAGGATTATCAAATGC+CGG - chr4_3:47533400-47533419 None:intergenic 35.0%
GCATCAATTAACCATTGATG+AGG - chr4_3:47533439-47533458 None:intergenic 35.0%
TGGTTAATTGATGCAACTGA+AGG + chr4_3:47533445-47533464 Msa0644020:CDS 35.0%
GGTTAATTGATGCAACTGAA+GGG + chr4_3:47533446-47533465 Msa0644020:CDS 35.0%
GTTAATTGATGCAACTGAAG+GGG + chr4_3:47533447-47533466 Msa0644020:CDS 35.0%
TCTATTGCTTGCTTCTTGTT+TGG - chr4_3:47533481-47533500 None:intergenic 35.0%
! GCAAATGAAAGATCTAGTTC+AGG + chr4_3:47533505-47533524 Msa0644020:CDS 35.0%
AAATTGTGATTGTTCTCCCA+CGG - chr4_3:47533553-47533572 None:intergenic 35.0%
ATCGCAAATCATTATGGAGA+TGG + chr4_3:47533700-47533719 Msa0644020:CDS 35.0%
! GAACCATGTATGAATTTTGG+GGG + chr4_3:47533766-47533785 Msa0644020:CDS 35.0%
ATTCCCCCAAAATTCATACA+TGG - chr4_3:47533772-47533791 None:intergenic 35.0%
CTGTCAAAATTATGTTGCTC+TGG - chr4_3:47533841-47533860 None:intergenic 35.0%
!! CAGAGCAACATAATTTTGAC+AGG + chr4_3:47533839-47533858 Msa0644020:intron 35.0%
!! TAATTTTGACAGGCAGAGTA+TGG + chr4_3:47533849-47533868 Msa0644020:intron 35.0%
!! AATTTTGACAGGCAGAGTAT+GGG + chr4_3:47533850-47533869 Msa0644020:intron 35.0%
ATCTACACCATGTCTATCAT+GGG + chr4_3:47533875-47533894 Msa0644020:CDS 35.0%
!!! GGATGGCAATGTCATTTTAA+TGG + chr4_3:47533942-47533961 Msa0644020:CDS 35.0%
!! ATTTTAATGGGACTTGCCTA+TGG + chr4_3:47533955-47533974 Msa0644020:CDS 35.0%
GTTATCTACTTTGCCATAAG+GGG - chr4_3:47534013-47534032 None:intergenic 35.0%
GTGTTATCTACTTTGCCATA+AGG - chr4_3:47534015-47534034 None:intergenic 35.0%
ATATGACTGTTCATAGTCTG+TGG - chr4_3:47534139-47534158 None:intergenic 35.0%
ATATCTACTGGTATGCTAGA+TGG + chr4_3:47534348-47534367 Msa0644020:CDS 35.0%
AAAGGAACTACCTATCTTTG+TGG + chr4_3:47534500-47534519 Msa0644020:CDS 35.0%
AAGGAACTACCTATCTTTGT+GGG + chr4_3:47534501-47534520 Msa0644020:CDS 35.0%
TCAGTCATGTAACTATTCCA+AGG + chr4_3:47534526-47534545 Msa0644020:CDS 35.0%
TTCCAAGGTTAGTAATCCAT+TGG + chr4_3:47534541-47534560 Msa0644020:intron 35.0%
!! TACCAATGGATTACTAACCT+TGG - chr4_3:47534546-47534565 None:intergenic 35.0%
GTCAAACAATGAACTTTCAG+GGG - chr4_3:47534772-47534791 None:intergenic 35.0%
GTGTCAAACAATGAACTTTC+AGG - chr4_3:47534774-47534793 None:intergenic 35.0%
TTGGTGCACCAAAAATTGTT+TGG - chr4_3:47534800-47534819 None:intergenic 35.0%
!! ATCAGAAAGCATTTCGCATT+TGG + chr4_3:47534823-47534842 Msa0644020:CDS 35.0%
! AAAGCATTTCGCATTTGGAA+AGG + chr4_3:47534828-47534847 Msa0644020:CDS 35.0%
TGTTTGTGCTTAAAAAGGTC+GGG - chr4_3:47534864-47534883 None:intergenic 35.0%
CTGTTTGTGCTTAAAAAGGT+CGG - chr4_3:47534865-47534884 None:intergenic 35.0%
! GAAATGATTCTGAAGACCAT+TGG - chr4_3:47534972-47534991 None:intergenic 35.0%
AAGTTAAGTTTGCGCAAAGA+TGG - chr4_3:47535058-47535077 None:intergenic 35.0%
TCTTTGCGCAAACTTAACTT+AGG + chr4_3:47535058-47535077 Msa0644020:three_prime_UTR 35.0%
!!! TTGTTTAGCTCTGTGACTTT+TGG + chr4_3:47535137-47535156 Msa0644020:three_prime_UTR 35.0%
! GTTGGTTTCACTCAAAAGAT+TGG + chr4_3:47535175-47535194 Msa0644020:three_prime_UTR 35.0%
ATGTCCAAATCATTGGGATT+AGG + chr4_3:47535214-47535233 Msa0644020:three_prime_UTR 35.0%
!! GGAGCAAGACTTGTTAATTT+CGG + chr4_3:47535300-47535319 Msa0644020:three_prime_UTR 35.0%
!! GAGCAAGACTTGTTAATTTC+GGG + chr4_3:47535301-47535320 Msa0644020:three_prime_UTR 35.0%
!! AGCAAGACTTGTTAATTTCG+GGG + chr4_3:47535302-47535321 Msa0644020:three_prime_UTR 35.0%
TCATCTAGGTAGGTGGTAAT+AGG - chr4_3:47531000-47531019 None:intergenic 40.0%
GAAGGAAAGAGAGAGGAATA+GGG - chr4_3:47531048-47531067 None:intergenic 40.0%
CTATTCCTCTCTCTTTCCTT+CGG + chr4_3:47531047-47531066 Msa0644020:five_prime_UTR 40.0%
! ACCCTAACCGGAGATTTTTA+CGG - chr4_3:47531085-47531104 None:intergenic 40.0%
ACTTTGACCTATTTGCGAGA+GGG - chr4_3:47531633-47531652 None:intergenic 40.0%
TTAAGAGGGTAGACCCAATT+TGG + chr4_3:47531670-47531689 Msa0644020:intron 40.0%
GGCCACGAAAAAATTGTGAA+GGG - chr4_3:47531696-47531715 None:intergenic 40.0%
GACAAATTAGTCCCTATGTC+AGG + chr4_3:47531774-47531793 Msa0644020:intron 40.0%
CAAATTAGTCCCTATGTCAG+GGG + chr4_3:47531776-47531795 Msa0644020:intron 40.0%
CCAAATTATTCCCCTGACAT+AGG - chr4_3:47531789-47531808 None:intergenic 40.0%
CCTATGTCAGGGGAATAATT+TGG + chr4_3:47531786-47531805 Msa0644020:intron 40.0%
!!! TCCCTCACATTTTTTTTCGC+GGG - chr4_3:47531836-47531855 None:intergenic 40.0%
!!! GTCCCTCACATTTTTTTTCG+CGG - chr4_3:47531837-47531856 None:intergenic 40.0%
AAAAATGTGAGGGACTGAAG+TGG + chr4_3:47531842-47531861 Msa0644020:intron 40.0%
AAAATGTGAGGGACTGAAGT+GGG + chr4_3:47531843-47531862 Msa0644020:intron 40.0%
ATTCTAAACACTGCCCCAAA+AGG - chr4_3:47531961-47531980 None:intergenic 40.0%
! TTGGGGCAGTGTTTAGAATT+AGG + chr4_3:47531962-47531981 Msa0644020:intron 40.0%
! TGGGGCAGTGTTTAGAATTA+GGG + chr4_3:47531963-47531982 Msa0644020:intron 40.0%
GACGAGACAAAAATGAGATG+GGG + chr4_3:47532000-47532019 Msa0644020:intron 40.0%
ATTTGAGGGATCTCAATCGT+TGG + chr4_3:47532067-47532086 Msa0644020:intron 40.0%
! CATATCATTAAGGGCATGAC+AGG + chr4_3:47532240-47532259 Msa0644020:intron 40.0%
ATGAGGAGGCTCAAATTTGA+GGG + chr4_3:47532442-47532461 Msa0644020:intron 40.0%
! CTCTTTTGCATGGTCTAATG+TGG - chr4_3:47532685-47532704 None:intergenic 40.0%
AACTTTGTTCACCCTTGATG+TGG - chr4_3:47532716-47532735 None:intergenic 40.0%
! GATTCAATAGGTTGAGACTC+TGG + chr4_3:47532823-47532842 Msa0644020:intron 40.0%
!! GAGACTCTGGAATTTACCAA+AGG + chr4_3:47532836-47532855 Msa0644020:intron 40.0%
AAACCCTTCTATACCCCATA+GGG + chr4_3:47532916-47532935 Msa0644020:intron 40.0%
AAGTTCCATAATGCCCTATG+GGG - chr4_3:47532932-47532951 None:intergenic 40.0%
CAAGTTCCATAATGCCCTAT+GGG - chr4_3:47532933-47532952 None:intergenic 40.0%
TCAAGTTCCATAATGCCCTA+TGG - chr4_3:47532934-47532953 None:intergenic 40.0%
! ATAGGGCATTATGGAACTTG+AGG + chr4_3:47532933-47532952 Msa0644020:intron 40.0%
! TAGGGCATTATGGAACTTGA+GGG + chr4_3:47532934-47532953 Msa0644020:intron 40.0%
CTTCACCTATCCAAACTAGT+AGG + chr4_3:47532972-47532991 Msa0644020:intron 40.0%
! AGATCCCTACTAGTTTGGAT+AGG - chr4_3:47532980-47532999 None:intergenic 40.0%
TGATCAGATCCCTACTAGTT+TGG - chr4_3:47532985-47533004 None:intergenic 40.0%
CAACTGACATAGGATAAAGG+AGG - chr4_3:47533230-47533249 None:intergenic 40.0%
CTCCTTTATCCTATGTCAGT+TGG + chr4_3:47533228-47533247 Msa0644020:intron 40.0%
ACAAAACAAGGGATTCTGGA+TGG + chr4_3:47533342-47533361 Msa0644020:CDS 40.0%
AAGGGATTCTGGATGGTAAA+AGG + chr4_3:47533349-47533368 Msa0644020:CDS 40.0%
TTCTGGATGGTAAAAGGATC+TGG + chr4_3:47533355-47533374 Msa0644020:CDS 40.0%
TCTGGATGGTAAAAGGATCT+GGG + chr4_3:47533356-47533375 Msa0644020:CDS 40.0%
!!! CGTTTTGGTTCGATTTTGGA+AGG - chr4_3:47533415-47533434 None:intergenic 40.0%
!!! AGGTCGTTTTGGTTCGATTT+TGG - chr4_3:47533419-47533438 None:intergenic 40.0%
AACCAAAACGACCTCATCAA+TGG + chr4_3:47533425-47533444 Msa0644020:CDS 40.0%
! AACCATTGATGAGGTCGTTT+TGG - chr4_3:47533430-47533449 None:intergenic 40.0%
! GATTATTTGGGTCTGAAACC+AGG + chr4_3:47533611-47533630 Msa0644020:CDS 40.0%
! TATGGAGATGGTGCATCTTT+TGG + chr4_3:47533712-47533731 Msa0644020:CDS 40.0%
GATCTACACCATGTCTATCA+TGG + chr4_3:47533874-47533893 Msa0644020:CDS 40.0%
TCTACACCATGTCTATCATG+GGG + chr4_3:47533876-47533895 Msa0644020:CDS 40.0%
AACAGCTCATGAGAAAGAGT+TGG + chr4_3:47534185-47534204 Msa0644020:CDS 40.0%
TGTAGTTGCAAGTACTCCTT+TGG + chr4_3:47534224-47534243 Msa0644020:CDS 40.0%
!!! GGCTTTTTTGTTGTCACCAA+AGG - chr4_3:47534243-47534262 None:intergenic 40.0%
!! ACATTAGTAGGGAAGGTGTT+TGG - chr4_3:47534318-47534337 None:intergenic 40.0%
TCAAGCTCCTGACATTAGTA+GGG - chr4_3:47534329-47534348 None:intergenic 40.0%
ATCAAGCTCCTGACATTAGT+AGG - chr4_3:47534330-47534349 None:intergenic 40.0%
TGTTCCTGTGAAGTATGTCT+CGG + chr4_3:47534371-47534390 Msa0644020:CDS 40.0%
TTGGTCAGAGTGTATACCAA+TGG - chr4_3:47534560-47534579 None:intergenic 40.0%
! TTCGAGTTTGAAAAGCATGC+TGG + chr4_3:47534663-47534682 Msa0644020:CDS 40.0%
TAAGTTTGCGCAAAGATGGT+GGG - chr4_3:47535054-47535073 None:intergenic 40.0%
TTAAGTTTGCGCAAAGATGG+TGG - chr4_3:47535055-47535074 None:intergenic 40.0%
GCGCAAACTTAACTTAGGTT+AGG + chr4_3:47535063-47535082 Msa0644020:three_prime_UTR 40.0%
! TGGTGCATTGTGTAACTTGT+TGG + chr4_3:47535157-47535176 Msa0644020:three_prime_UTR 40.0%
GGTTTCACTCAAAAGATTGG+AGG + chr4_3:47535178-47535197 Msa0644020:three_prime_UTR 40.0%
AGCACCTAATCCCAATGATT+TGG - chr4_3:47535221-47535240 None:intergenic 40.0%
TCTAGAAAGCTCATGTTCGT+GGG + chr4_3:47535269-47535288 Msa0644020:three_prime_UTR 40.0%
TCATGTTCGTGGGTGATTAA+AGG + chr4_3:47535279-47535298 Msa0644020:three_prime_UTR 40.0%
CGAAGGAAAGAGAGAGGAAT+AGG - chr4_3:47531049-47531068 None:intergenic 45.0%
! CTAACCGGAGATTTTTACGG+CGG - chr4_3:47531082-47531101 None:intergenic 45.0%
GCCGTAAAAATCTCCGGTTA+GGG + chr4_3:47531081-47531100 Msa0644020:five_prime_UTR 45.0%
TCTGTACCATCGGAGATGAT+CGG - chr4_3:47531109-47531128 None:intergenic 45.0%
GGTTACACGATCTGTACCAT+CGG - chr4_3:47531119-47531138 None:intergenic 45.0%
GCTAAATCCCTCTCGCAAAT+AGG + chr4_3:47531623-47531642 Msa0644020:intron 45.0%
GACTTTGACCTATTTGCGAG+AGG - chr4_3:47531634-47531653 None:intergenic 45.0%
!!! GGCCCTTCACAATTTTTTCG+TGG + chr4_3:47531691-47531710 Msa0644020:intron 45.0%
GGGCCACGAAAAAATTGTGA+AGG - chr4_3:47531697-47531716 None:intergenic 45.0%
GCCCGCGAAAAAAAATGTGA+GGG + chr4_3:47531832-47531851 Msa0644020:intron 45.0%
! GGGGCAGTGTTTAGAATTAG+GGG + chr4_3:47531964-47531983 Msa0644020:intron 45.0%
! GGGCAGTGTTTAGAATTAGG+GGG + chr4_3:47531965-47531984 Msa0644020:intron 45.0%
! AGGGATCTCAATCGTTGGTT+AGG + chr4_3:47532072-47532091 Msa0644020:intron 45.0%
GATGAGGAGGCTCAAATTTG+AGG + chr4_3:47532441-47532460 Msa0644020:intron 45.0%
!! GGATGAAGTGCTCTTTTGCA+TGG - chr4_3:47532695-47532714 None:intergenic 45.0%
! AGAGCACTTCATCCACATCA+AGG + chr4_3:47532701-47532720 Msa0644020:intron 45.0%
GAGCACTTCATCCACATCAA+GGG + chr4_3:47532702-47532721 Msa0644020:intron 45.0%
AAGAGAAAAGAAAAGGGGGC+CGG + chr4_3:47532768-47532787 Msa0644020:intron 45.0%
CTATGGGGTATAGAAGGGTT+TGG - chr4_3:47532917-47532936 None:intergenic 45.0%
CAAACCCTTCTATACCCCAT+AGG + chr4_3:47532915-47532934 Msa0644020:intron 45.0%
ATGCCCTATGGGGTATAGAA+GGG - chr4_3:47532922-47532941 None:intergenic 45.0%
AATGCCCTATGGGGTATAGA+AGG - chr4_3:47532923-47532942 None:intergenic 45.0%
! CTATACCCCATAGGGCATTA+TGG + chr4_3:47532924-47532943 Msa0644020:intron 45.0%
ACTTGAGGGAGCAATCATTG+AGG + chr4_3:47532948-47532967 Msa0644020:intron 45.0%
CTAGTAGGGATCTGATCACA+TGG + chr4_3:47532987-47533006 Msa0644020:intron 45.0%
GTGGTATAAGTTTCCCGACA+TGG - chr4_3:47533173-47533192 None:intergenic 45.0%
TTCAGTGAAATTGACAGGCC+TGG - chr4_3:47533632-47533651 None:intergenic 45.0%
CAACTTCCCCATGATAGACA+TGG - chr4_3:47533885-47533904 None:intergenic 45.0%
AGACGAGATCTGGATCAACA+GGG + chr4_3:47533905-47533924 Msa0644020:CDS 45.0%
GACATTGCCATCCTTGTCAA+AGG - chr4_3:47533935-47533954 None:intergenic 45.0%
ACACCTTCCCTACTAATGTC+AGG + chr4_3:47534319-47534338 Msa0644020:CDS 45.0%
GTCAGGAGCTTGATATCTAC+TGG + chr4_3:47534336-47534355 Msa0644020:CDS 45.0%
CGAAGTTCCTGCATCCATAA+AGG - chr4_3:47534470-47534489 None:intergenic 45.0%
TTATGGATGCAGGAACTTCG+TGG + chr4_3:47534470-47534489 Msa0644020:intron 45.0%
TGACTGACACCCACAAAGAT+AGG - chr4_3:47534513-47534532 None:intergenic 45.0%
AAACAGACTAACGGCTGCAT+AGG + chr4_3:47534879-47534898 Msa0644020:intron 45.0%
! CGTGAGCTTCAACGGATTTA+TGG + chr4_3:47535003-47535022 Msa0644020:CDS 45.0%
AAGTTTGCGCAAAGATGGTG+GGG - chr4_3:47535053-47535072 None:intergenic 45.0%
! CTCTAGAAAGCTCATGTTCG+TGG + chr4_3:47535268-47535287 Msa0644020:three_prime_UTR 45.0%
!! TAATTTCGGGGCACTGAACT+CGG + chr4_3:47535314-47535333 Msa0644020:three_prime_UTR 45.0%
AGAGAGGAATAGGGTGTGTG+AGG - chr4_3:47531039-47531058 None:intergenic 50.0%
GAAAGCCGAAGGAAAGAGAG+AGG - chr4_3:47531055-47531074 None:intergenic 50.0%
CGCCGTAAAAATCTCCGGTT+AGG + chr4_3:47531080-47531099 Msa0644020:five_prime_UTR 50.0%
GAGATGATCGGAACCCTAAC+CGG - chr4_3:47531097-47531116 None:intergenic 50.0%
GGCCCGCGAAAAAAAATGTG+AGG + chr4_3:47531831-47531850 Msa0644020:intron 50.0%
AGAGAAAAGAAAAGGGGGCC+GGG + chr4_3:47532769-47532788 Msa0644020:intron 50.0%
AGAACGTTACCTAGCATCCC+CGG - chr4_3:47532790-47532809 None:intergenic 50.0%
TCCCGACATGGCAGAGTATA+GGG - chr4_3:47533161-47533180 None:intergenic 50.0%
TTCCCGACATGGCAGAGTAT+AGG - chr4_3:47533162-47533181 None:intergenic 50.0%
GCATGTTAGTGACAGAGAGC+CGG + chr4_3:47533378-47533397 Msa0644020:CDS 50.0%
AATACCTACGTTTCGGGCGA+TGG + chr4_3:47533655-47533674 Msa0644020:CDS 50.0%
! TCTGGAGCTTGCACATCACT+AGG - chr4_3:47533823-47533842 None:intergenic 50.0%
GAGACGAGATCTGGATCAAC+AGG + chr4_3:47533904-47533923 Msa0644020:CDS 50.0%
AACAGGGCAAGCCTTTGACA+AGG + chr4_3:47533921-47533940 Msa0644020:CDS 50.0%
!! TTGCCATAAGGGGTGCCAAA+CGG - chr4_3:47534003-47534022 None:intergenic 50.0%
!! TTGGTGGGTTCCCAGATGAA+CGG + chr4_3:47534088-47534107 Msa0644020:CDS 50.0%
AGATAGCACCCCGTTCATCT+GGG - chr4_3:47534101-47534120 None:intergenic 50.0%
GCTCCTGACATTAGTAGGGA+AGG - chr4_3:47534325-47534344 None:intergenic 50.0%
TCCTGTGAAGTATGTCTCGG+TGG + chr4_3:47534374-47534393 Msa0644020:CDS 50.0%
CAGCAACACGTGAGCTTCAA+CGG + chr4_3:47534995-47535014 Msa0644020:CDS 50.0%
!! CAAAGATGGTGGGGACTTAG+AGG - chr4_3:47535044-47535063 None:intergenic 50.0%
TCCGCCGCCGTAAAAATCTC+CGG + chr4_3:47531075-47531094 Msa0644020:five_prime_UTR 55.0%
! ACCGGAGATTTTTACGGCGG+CGG - chr4_3:47531079-47531098 None:intergenic 55.0%
AGGGTTCCGATCATCTCCGA+TGG + chr4_3:47531100-47531119 Msa0644020:five_prime_UTR 55.0%
GAGAAAAGAAAAGGGGGCCG+GGG + chr4_3:47532770-47532789 Msa0644020:intron 55.0%
TGGCAGAGTATAGGGGGGAA+GGG - chr4_3:47533153-47533172 None:intergenic 55.0%
ATGGCAGAGTATAGGGGGGA+AGG - chr4_3:47533154-47533173 None:intergenic 55.0%
CGACATGGCAGAGTATAGGG+GGG - chr4_3:47533158-47533177 None:intergenic 55.0%
CCGACATGGCAGAGTATAGG+GGG - chr4_3:47533159-47533178 None:intergenic 55.0%
CCCCCTATACTCTGCCATGT+CGG + chr4_3:47533156-47533175 Msa0644020:intron 55.0%
CCCGACATGGCAGAGTATAG+GGG - chr4_3:47533160-47533179 None:intergenic 55.0%
CCCCTATACTCTGCCATGTC+GGG + chr4_3:47533157-47533176 Msa0644020:intron 55.0%
AGAACCATCGCCCGAAACGT+AGG - chr4_3:47533662-47533681 None:intergenic 55.0%
GGGGAAGTTGAGACGAGATC+TGG + chr4_3:47533895-47533914 Msa0644020:CDS 55.0%
GGGCAAGCCTTTGACAAGGA+TGG + chr4_3:47533925-47533944 Msa0644020:CDS 55.0%
ATGGGACTTGCCTATGGCAG+TGG + chr4_3:47533961-47533980 Msa0644020:CDS 55.0%
TGGGACTTGCCTATGGCAGT+GGG + chr4_3:47533962-47533981 Msa0644020:CDS 55.0%
GATGCCCGTATCAGACCGTT+TGG + chr4_3:47533985-47534004 Msa0644020:CDS 55.0%
GGTGCCAAACGGTCTGATAC+GGG - chr4_3:47533992-47534011 None:intergenic 55.0%
GGGTGCCAAACGGTCTGATA+CGG - chr4_3:47533993-47534012 None:intergenic 55.0%
AGACCGTTTGGCACCCCTTA+TGG + chr4_3:47533997-47534016 Msa0644020:CDS 55.0%
!! TGGTGGGTTCCCAGATGAAC+GGG + chr4_3:47534089-47534108 Msa0644020:CDS 55.0%
GAGATAGCACCCCGTTCATC+TGG - chr4_3:47534102-47534121 None:intergenic 55.0%
! TGAACGGGGTGCTATCTCTG+TGG + chr4_3:47534104-47534123 Msa0644020:intron 55.0%
! GAACGGGGTGCTATCTCTGT+GGG + chr4_3:47534105-47534124 Msa0644020:intron 55.0%
GCCACCGAGACATACTTCAC+AGG - chr4_3:47534378-47534397 None:intergenic 55.0%
TGAAGTATGTCTCGGTGGCG+CGG + chr4_3:47534379-47534398 Msa0644020:CDS 55.0%
GGGACTTGCCTATGGCAGTG+GGG + chr4_3:47533963-47533982 Msa0644020:CDS 60.0%
! GGTGGGTTCCCAGATGAACG+GGG + chr4_3:47534090-47534109 Msa0644020:CDS 60.0%
! GGGTGCTATCTCTGTGGGCA+GGG + chr4_3:47534110-47534129 Msa0644020:intron 60.0%
GAAGTATGTCTCGGTGGCGC+GGG + chr4_3:47534380-47534399 Msa0644020:CDS 60.0%
AAAAGGGGGCCGGGGATGCT+AGG + chr4_3:47532778-47532797 Msa0644020:intron 65.0%
ACGGGCATCCCCACTGCCAT+AGG - chr4_3:47533974-47533993 None:intergenic 65.0%
! GGGGTGCTATCTCTGTGGGC+AGG + chr4_3:47534109-47534128 Msa0644020:intron 65.0%
GTGGCGCGGGAGGTAAGTGT+TGG + chr4_3:47534393-47534412 Msa0644020:intron 65.0%
ACGGCGGCGGAGAAAGCCGA+AGG - chr4_3:47531066-47531085 None:intergenic 70.0%
GTATGTCTCGGTGGCGCGGG+AGG + chr4_3:47534383-47534402 Msa0644020:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 47530971 47535419 47530971 ID=Msa0644020;Name=Msa0644020
chr4_3 mRNA 47530971 47535419 47530971 ID=Msa0644020-mRNA-1;Parent=Msa0644020;Name=Msa0644020-mRNA-1;_AED=0.09;_eAED=0.09;_QI=182|0.42|0.5|1|0.42|0.37|8|372|428
chr4_3 exon 47530971 47531182 47530971 ID=Msa0644020-mRNA-1:exon:11258;Parent=Msa0644020-mRNA-1
chr4_3 exon 47533337 47533537 47533337 ID=Msa0644020-mRNA-1:exon:11259;Parent=Msa0644020-mRNA-1
chr4_3 exon 47533559 47533804 47533559 ID=Msa0644020-mRNA-1:exon:11260;Parent=Msa0644020-mRNA-1
chr4_3 exon 47533865 47534111 47533865 ID=Msa0644020-mRNA-1:exon:11261;Parent=Msa0644020-mRNA-1
chr4_3 exon 47534172 47534404 47534172 ID=Msa0644020-mRNA-1:exon:11262;Parent=Msa0644020-mRNA-1
chr4_3 exon 47534482 47534547 47534482 ID=Msa0644020-mRNA-1:exon:11263;Parent=Msa0644020-mRNA-1
chr4_3 exon 47534651 47534849 47534651 ID=Msa0644020-mRNA-1:exon:11264;Parent=Msa0644020-mRNA-1
chr4_3 exon 47534983 47535419 47534983 ID=Msa0644020-mRNA-1:exon:11265;Parent=Msa0644020-mRNA-1
chr4_3 five_prime_UTR 47530971 47531152 47530971 ID=Msa0644020-mRNA-1:five_prime_utr;Parent=Msa0644020-mRNA-1
chr4_3 CDS 47531153 47531182 47531153 ID=Msa0644020-mRNA-1:cds;Parent=Msa0644020-mRNA-1
chr4_3 CDS 47533337 47533537 47533337 ID=Msa0644020-mRNA-1:cds;Parent=Msa0644020-mRNA-1
chr4_3 CDS 47533559 47533804 47533559 ID=Msa0644020-mRNA-1:cds;Parent=Msa0644020-mRNA-1
chr4_3 CDS 47533865 47534111 47533865 ID=Msa0644020-mRNA-1:cds;Parent=Msa0644020-mRNA-1
chr4_3 CDS 47534172 47534404 47534172 ID=Msa0644020-mRNA-1:cds;Parent=Msa0644020-mRNA-1
chr4_3 CDS 47534482 47534547 47534482 ID=Msa0644020-mRNA-1:cds;Parent=Msa0644020-mRNA-1
chr4_3 CDS 47534651 47534849 47534651 ID=Msa0644020-mRNA-1:cds;Parent=Msa0644020-mRNA-1
chr4_3 CDS 47534983 47535047 47534983 ID=Msa0644020-mRNA-1:cds;Parent=Msa0644020-mRNA-1
chr4_3 three_prime_UTR 47535048 47535419 47535048 ID=Msa0644020-mRNA-1:three_prime_utr;Parent=Msa0644020-mRNA-1
Gene Sequence

>Msa0644020

ATGCTATCAATTTTTTCACCATTTTCTAAGTCTTTACAAAACAAGGGATTCTGGATGGTAAAAGGATCTGGGCATGTTAGTGACAGAGAGCCGGCATTTGATAATCCTTCCAAAATCGAACCAAAACGACCTCATCAATGGTTAATTGATGCAACTGAAGGGGATTTTTTGCCAAACAAGAAGCAAGCAATAGAAGATGCAAATGAAAGATCTAGTTCAGGATTTTCAAATAACAATCACAATTTTCATTCAGACCCAAGCCACCAAAATCAATTAATTGATCGATTATTTGGGTCTGAAACCAGGCCTGTCAATTTCACTGAAAAAAATACCTACGTTTCGGGCGATGGTTCTGATGTGAGATCAAAGATGATCGCAAATCATTATGGAGATGGTGCATCTTTTGGCTTGTCTATATCTCATTCTACTGAAGATTCTGAACCATGTATGAATTTTGGGGGAATCAAGAAAGTCAAAAGTATGGGTGATCTACACCATGTCTATCATGGGGAAGTTGAGACGAGATCTGGATCAACAGGGCAAGCCTTTGACAAGGATGGCAATGTCATTTTAATGGGACTTGCCTATGGCAGTGGGGATGCCCGTATCAGACCGTTTGGCACCCCTTATGGCAAAGTAGATAACACAGTCCTATCCATTGCTGAATCTTATAATAAAGACGAGACAAATATAATTTCTTTTGGTGGGTTCCCAGATGAACGGGTTCATGTGTCAACAACAGCTCATGAGAAAGAGTTGGATGCATCAAATTCTGATGTAGTTGCAAGTACTCCTTTGGTGACAACAAAAAAGCCTGAATCTATGTCCAAGAATAAACAAGATATCAAATCAACAAGGAAAGAATCTCCAAACACCTTCCCTACTAATGTCAGGAGCTTGATATCTACTGGTATGCTAGATGGTGTTCCTGTGAAGTATGTCTCGGTGGCGCGGGAGGAACTTCGTGGAATTATAAAAGGAACTACCTATCTTTGTGGGTGTCAGTCATGTAACTATTCCAAGGGTCTGAATGCTTTCGAGTTTGAAAAGCATGCTGGTTGCAAATCAAAACATCCAAACAATCACATTTATTTTGAGAATGGGAAGACCATTTATCAAATAGTACAGGAATTGAGGAGTACCCCTGAAAGTTCATTGTTTGACACAATCCAAACAATTTTTGGTGCACCAATAAATCAGAAAGCATTTCGCATTTGGAAAGAATCATTTCAAGCAGCAACACGTGAGCTTCAACGGATTTATGGAAATGAAAAACGTAACCTCTAA
Protein sequence

>Msa0644020

MLSIFSPFSKSLQNKGFWMVKGSGHVSDREPAFDNPSKIEPKRPHQWLIDATEGDFLPNKKQAIEDANERSSSGFSNNNHNFHSDPSHQNQLIDRLFGSETRPVNFTEKNTYVSGDGSDVRSKMIANHYGDGASFGLSISHSTEDSEPCMNFGGIKKVKSMGDLHHVYHGEVETRSGSTGQAFDKDGNVILMGLAYGSGDARIRPFGTPYGKVDNTVLSIAESYNKDETNIISFGGFPDERVHVSTTAHEKELDASNSDVVASTPLVTTKKPESMSKNKQDIKSTRKESPNTFPTNVRSLISTGMLDGVPVKYVSVAREELRGIIKGTTYLCGCQSCNYSKGLNAFEFEKHAGCKSKHPNNHIYFENGKTIYQIVQELRSTPESSLFDTIQTIFGAPINQKAFRIWKESFQAATRELQRIYGNEKRNL*