Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0685340 | XP_024637513.1 | 88.363 | 507 | 46 | 4 | 1 | 497 | 1 | 504 | 0.0 | 838 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0685340 | sp|O94481|TFC5_SCHPO | 50.909 | 55 | 27 | 0 | 357 | 411 | 380 | 434 | 1.57e-11 | 70.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0685340 | A0A396IBT0 | 88.363 | 507 | 46 | 4 | 1 | 497 | 1 | 504 | 0.0 | 838 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0685340 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0604590 | Msa0685340 | 0.827805 | 1.277482e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0685340 | MtrunA17_Chr4g0033581 | 88.363 | 507 | 46 | 4 | 1 | 497 | 1 | 504 | 0.0 | 838 |
| Msa0685340 | MtrunA17_Chr8g0383101 | 53.535 | 396 | 145 | 10 | 137 | 497 | 371 | 762 | 4.12e-86 | 281 |
| Msa0685340 | MtrunA17_Chr8g0383111 | 52.991 | 117 | 42 | 3 | 124 | 230 | 46 | 159 | 2.44e-13 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0685340 | AT4G39160.1 | 37.778 | 270 | 145 | 8 | 170 | 430 | 266 | 521 | 5.57e-39 | 150 |
| Msa0685340 | AT4G39160.3 | 37.778 | 270 | 145 | 8 | 170 | 430 | 266 | 521 | 5.57e-39 | 150 |
| Msa0685340 | AT4G39160.2 | 37.778 | 270 | 145 | 8 | 170 | 430 | 266 | 521 | 7.17e-39 | 150 |
Find 116 sgRNAs with CRISPR-Local
Find 289 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTCTCAATCAATTTCTCTT+AGG | 0.163126 | 4_4:+49462670 | Msa0685340:CDS |
| GGGTTTGATGTCGCGATTTC+GGG | 0.176338 | 4_4:-49460384 | None:intergenic |
| TCTTGCAATTGCAGAAAATA+AGG | 0.274714 | 4_4:+49462698 | Msa0685340:CDS |
| GACATCAAACCCCAACTTTC+CGG | 0.281579 | 4_4:+49460395 | Msa0685340:five_prime_UTR |
| TCTATATTGTTACAAATATA+AGG | 0.289417 | 4_4:-49462329 | None:intergenic |
| GTTCTTAACTTGGAAAGATT+TGG | 0.294774 | 4_4:-49465170 | None:intergenic |
| GGGGTTTGATGTCGCGATTT+CGG | 0.327749 | 4_4:-49460385 | None:intergenic |
| TTTGATTTGTCTTGAATGAT+TGG | 0.332251 | 4_4:-49460430 | None:intergenic |
| CACAGTGGACCAGGCTCTGC+TGG | 0.334784 | 4_4:+49462632 | Msa0685340:intron |
| TTAAGAACAACTAGTGGTTT+TGG | 0.340126 | 4_4:+49465185 | Msa0685340:CDS |
| GTTGAATCATTGTAAAATCT+AGG | 0.346657 | 4_4:-49463590 | None:intergenic |
| TGATGTCGCGATTTCGGGTT+CGG | 0.350190 | 4_4:-49460379 | None:intergenic |
| AGCGAATCCACCGGAAAGTT+GGG | 0.356355 | 4_4:-49460405 | None:intergenic |
| ACAAGTCACCTAGGGTAAAA+TGG | 0.357410 | 4_4:+49463377 | Msa0685340:CDS |
| CATGCTACCTCGTCTGTAGA+TGG | 0.366233 | 4_4:+49461526 | Msa0685340:CDS |
| CTGCTGGATGATTATGAACT+TGG | 0.367304 | 4_4:+49462648 | Msa0685340:CDS |
| GGCTTCCTGATTTGCATTAG+TGG | 0.370648 | 4_4:-49463901 | None:intergenic |
| CCCGAGACCAACCTCAATAA+TGG | 0.372518 | 4_4:+49461595 | Msa0685340:CDS |
| ACCATTATTGAGGTTGGTCT+CGG | 0.372588 | 4_4:-49461596 | None:intergenic |
| CACTTCTGAAGCCAACATTT+AGG | 0.375419 | 4_4:-49461853 | None:intergenic |
| ACCACTAGTTGTTCTTAACT+TGG | 0.382686 | 4_4:-49465180 | None:intergenic |
| TTCTACCACTAATGCAAATC+AGG | 0.389275 | 4_4:+49463896 | Msa0685340:CDS |
| TTCTCAATCAATTTCTCTTA+GGG | 0.392485 | 4_4:+49462671 | Msa0685340:CDS |
| TACTAGCTTGATCATACTCT+TGG | 0.398834 | 4_4:-49463303 | None:intergenic |
| GTTGGCTTCAGAAGTGCTTC+AGG | 0.403637 | 4_4:+49461860 | Msa0685340:CDS |
| GGGGATTTCTTTCATGATGC+TGG | 0.405910 | 4_4:+49463229 | Msa0685340:CDS |
| AAAAGTTCTCTCATTCTTCT+CGG | 0.409991 | 4_4:+49462513 | Msa0685340:CDS |
| CAGCGAATCCACCGGAAAGT+TGG | 0.412347 | 4_4:-49460406 | None:intergenic |
| ACATAGGCTCTGAAGGAGTT+TGG | 0.412678 | 4_4:+49463567 | Msa0685340:intron |
| TGGAAAATGAGAGTGAAGAG+AGG | 0.421788 | 4_4:-49460289 | None:intergenic |
| GCTATTAATAGTCGTTCATC+AGG | 0.426472 | 4_4:+49463696 | Msa0685340:CDS |
| CGTAAAAGATCATCTGTTGC+TGG | 0.432583 | 4_4:+49462197 | Msa0685340:CDS |
| AGAGGGAGGAAAAGAGCAAA+GGG | 0.437515 | 4_4:-49460271 | None:intergenic |
| TTTATTTCCAGAGTAACAAA+AGG | 0.439614 | 4_4:+49465138 | Msa0685340:intron |
| TTTGACCTTCGGCGCAAACT+TGG | 0.442856 | 4_4:-49461464 | None:intergenic |
| GTGACTTGTCCCTAAAAGAA+TGG | 0.456507 | 4_4:-49463363 | None:intergenic |
| AACATAACTTACCATTATTG+AGG | 0.456653 | 4_4:-49461606 | None:intergenic |
| GTGATGATGACTTACGGAAA+TGG | 0.472624 | 4_4:+49464560 | Msa0685340:CDS |
| ATTGAGGTTGGTCTCGGGAA+TGG | 0.473304 | 4_4:-49461590 | None:intergenic |
| AGAGTGCATACATTAATTCC+AGG | 0.475172 | 4_4:-49463951 | None:intergenic |
| TTTCATTCCCACAGTGGACC+AGG | 0.476047 | 4_4:+49462623 | Msa0685340:intron |
| CTGTGTTGCTTACCTTCGAT+TGG | 0.477352 | 4_4:-49462859 | None:intergenic |
| CAGTGCTGATGTTAAAGATC+AGG | 0.478050 | 4_4:+49464495 | Msa0685340:CDS |
| TGCAGATATTTCCTTTCGTA+AGG | 0.479200 | 4_4:-49461497 | None:intergenic |
| AATGGAATGAATGTTGTTCT+CGG | 0.482678 | 4_4:-49461903 | None:intergenic |
| TGACTTGTCCCTAAAAGAAT+GGG | 0.487889 | 4_4:-49463362 | None:intergenic |
| TAACTTACCATTATTGAGGT+TGG | 0.489810 | 4_4:-49461602 | None:intergenic |
| TCAAGACAAATCAAAAGAAA+AGG | 0.491272 | 4_4:+49460438 | Msa0685340:five_prime_UTR |
| CCATTATTGAGGTTGGTCTC+GGG | 0.494784 | 4_4:-49461595 | None:intergenic |
| CATTACTAACCACGTGCAGC+AGG | 0.498380 | 4_4:-49461330 | None:intergenic |
| GCATTAGTGGTAGAAATTTG+TGG | 0.499145 | 4_4:-49463888 | None:intergenic |
| TGTTGCTTACCTTCGATTGG+TGG | 0.499150 | 4_4:-49462856 | None:intergenic |
| CAGATAAGAGAGGGAAATTG+TGG | 0.501825 | 4_4:-49460309 | None:intergenic |
| TCACTATCATCAGATTGCTC+TGG | 0.502518 | 4_4:-49464541 | None:intergenic |
| TGCAGAAAATAAGGAGCGAC+CGG | 0.506681 | 4_4:+49462707 | Msa0685340:CDS |
| TAGTGCCAAGTTTGCGCCGA+AGG | 0.506770 | 4_4:+49461459 | Msa0685340:CDS |
| TCATTAATTGAGGATGATGA+TGG | 0.509072 | 4_4:+49462296 | Msa0685340:intron |
| GAGAGGGAGGAAAAGAGCAA+AGG | 0.514133 | 4_4:-49460272 | None:intergenic |
| ATAGCATCAGTTATTCGTAA+AGG | 0.518506 | 4_4:-49463678 | None:intergenic |
| AAATGAGAGTGAAGAGAGGG+AGG | 0.522712 | 4_4:-49460285 | None:intergenic |
| AAATATTTAGCTGCAGTGGT+GGG | 0.523222 | 4_4:+49463209 | Msa0685340:intron |
| AAATTCAGAAGAGAGGAAGC+AGG | 0.524487 | 4_4:-49460351 | None:intergenic |
| TTTAAAATATTTAGCTGCAG+TGG | 0.528589 | 4_4:+49463205 | Msa0685340:intron |
| CATAATCATCCAGCAGAGCC+TGG | 0.529086 | 4_4:-49462641 | None:intergenic |
| TCTCAGGCAAACCTGCCTCA+TGG | 0.530777 | 4_4:+49461278 | Msa0685340:intron |
| CTCTGGACTATGATAAGCCA+TGG | 0.534113 | 4_4:-49464524 | None:intergenic |
| GGAATGGATTTAGTGACGGT+GGG | 0.535901 | 4_4:-49461574 | None:intergenic |
| AAAATATTTAGCTGCAGTGG+TGG | 0.541517 | 4_4:+49463208 | Msa0685340:intron |
| AATGGATTTAGTGACGGTGG+GGG | 0.543456 | 4_4:-49461572 | None:intergenic |
| CTGTCAAGGAATGCAGTGGA+TGG | 0.545069 | 4_4:-49461791 | None:intergenic |
| GGAAAATGAGAGTGAAGAGA+GGG | 0.546026 | 4_4:-49460288 | None:intergenic |
| AAGATCATCTGTTGCTGGTG+TGG | 0.557955 | 4_4:+49462202 | Msa0685340:CDS |
| ATGCTACCTCGTCTGTAGAT+GGG | 0.560684 | 4_4:+49461527 | Msa0685340:CDS |
| AATATTTAGCTGCAGTGGTG+GGG | 0.567750 | 4_4:+49463210 | Msa0685340:intron |
| TTATTTCCAGAGTAACAAAA+GGG | 0.574143 | 4_4:+49465139 | Msa0685340:intron |
| GTCAAGGAATGCAGTGGATG+GGG | 0.578734 | 4_4:-49461789 | None:intergenic |
| ATGATAGTGATGATGACTTA+CGG | 0.580140 | 4_4:+49464554 | Msa0685340:CDS |
| TTGCAAGACAGCCTAAATGT+TGG | 0.580193 | 4_4:+49461842 | Msa0685340:CDS |
| TCTATAATTCAGATAAGAGA+GGG | 0.581623 | 4_4:-49460318 | None:intergenic |
| TTTATTAGGATGCTAATGAG+AGG | 0.585716 | 4_4:+49462156 | Msa0685340:intron |
| ATCAAAACAGTCCTTACGAA+AGG | 0.590154 | 4_4:+49461486 | Msa0685340:CDS |
| GAATGGATTTAGTGACGGTG+GGG | 0.591826 | 4_4:-49461573 | None:intergenic |
| TCCAAGTTAAGAACAACTAG+TGG | 0.591931 | 4_4:+49465179 | Msa0685340:CDS |
| ACTACTGAAGACATGTCACC+TGG | 0.592887 | 4_4:+49463933 | Msa0685340:CDS |
| CTCGGGAATGGATTTAGTGA+CGG | 0.594357 | 4_4:-49461578 | None:intergenic |
| GCGAATCCACCGGAAAGTTG+GGG | 0.594414 | 4_4:-49460404 | None:intergenic |
| AAATGATGACGAGGACGAAG+TGG | 0.594931 | 4_4:+49462364 | Msa0685340:CDS |
| GTCTTCAGTAGTGTCTTCAG+TGG | 0.600402 | 4_4:-49463922 | None:intergenic |
| TGCTGATGTTAAAGATCAGG+AGG | 0.606209 | 4_4:+49464498 | Msa0685340:CDS |
| TTCTATAATTCAGATAAGAG+AGG | 0.608069 | 4_4:-49460319 | None:intergenic |
| ATCAAACCCCAACTTTCCGG+TGG | 0.609919 | 4_4:+49460398 | Msa0685340:five_prime_UTR |
| CAAAATCTTCCACCAATCGA+AGG | 0.613148 | 4_4:+49462847 | Msa0685340:CDS |
| GGGAATGGATTTAGTGACGG+TGG | 0.613872 | 4_4:-49461575 | None:intergenic |
| CTTGAAGCTCCTGCTGCACG+TGG | 0.616756 | 4_4:+49461321 | Msa0685340:CDS |
| TGTCAAGGAATGCAGTGGAT+GGG | 0.621373 | 4_4:-49461790 | None:intergenic |
| AATTCAGAAGAGAGGAAGCA+GGG | 0.622815 | 4_4:-49460350 | None:intergenic |
| TTCGGCGCAAACTTGGCACT+AGG | 0.622860 | 4_4:-49461457 | None:intergenic |
| TAAAGATCAGGAGGATCCCA+TGG | 0.630077 | 4_4:+49464507 | Msa0685340:CDS |
| AGAGCAAAGGGTGAGAAACA+AGG | 0.631128 | 4_4:-49460259 | None:intergenic |
| ATCATCTGTTGCTGGTGTGG+AGG | 0.632127 | 4_4:+49462205 | Msa0685340:CDS |
| ATATTGTTACAAATATAAGG+AGG | 0.636102 | 4_4:-49462326 | None:intergenic |
| GGCTGCGAAATTCAGAAGAG+AGG | 0.638717 | 4_4:-49460358 | None:intergenic |
| AGAAAATAAGGAGCGACCGG+AGG | 0.647366 | 4_4:+49462710 | Msa0685340:CDS |
| AGAATGGGAATTGTATAAAG+CGG | 0.648772 | 4_4:-49463347 | None:intergenic |
| ATGACTGTGATAAAAGCTCA+AGG | 0.648975 | 4_4:+49462228 | Msa0685340:CDS |
| GTTGCTGTCAAGGAATGCAG+TGG | 0.651362 | 4_4:-49461795 | None:intergenic |
| TCTGGACTATGATAAGCCAT+GGG | 0.651572 | 4_4:-49464523 | None:intergenic |
| TATTGTTACAAATATAAGGA+GGG | 0.653546 | 4_4:-49462325 | None:intergenic |
| TACTTCCGGAAAAGTACAAG+AGG | 0.653833 | 4_4:+49461928 | Msa0685340:CDS |
| TGATTGGACAGCGAATCCAC+CGG | 0.662198 | 4_4:-49460414 | None:intergenic |
| AGAGGTTGCAACAACTGAGG+AGG | 0.662600 | 4_4:+49464471 | Msa0685340:CDS |
| TTATTCGTAAAGGATGATGT+CGG | 0.671321 | 4_4:-49463668 | None:intergenic |
| GGAAGAGGTTGCAACAACTG+AGG | 0.674245 | 4_4:+49464468 | Msa0685340:intron |
| TGCTGGTGCTAATAGTGAAG+AGG | 0.679934 | 4_4:+49463246 | Msa0685340:CDS |
| ACTTGAAGAAAATGATGACG+AGG | 0.685696 | 4_4:+49462355 | Msa0685340:CDS |
| GTTCTTCCCATCTACAGACG+AGG | 0.708904 | 4_4:-49461533 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTTTATTTATACGTA+CGG | + | chr4_4:49461369-49461388 | Msa0685340:intron | 10.0% |
| !!! | TATAATTATATTGTTTTTGT+AGG | + | chr4_4:49461430-49461449 | Msa0685340:intron | 10.0% |
| !!! | TTTCATTTGTAATTTTTATT+AGG | + | chr4_4:49462142-49462161 | Msa0685340:intron | 10.0% |
| !! | TTAAAAAAATATAATTGACA+AGG | - | chr4_4:49463038-49463057 | None:intergenic | 10.0% |
| !!! | TTAATTTTAATATTAGAATC+AGG | - | chr4_4:49465116-49465135 | None:intergenic | 10.0% |
| !!! | GTTTTTTATTTTTCAAAACT+TGG | + | chr4_4:49460516-49460535 | Msa0685340:intron | 15.0% |
| !!! | CTTAATTAATTTAATTTCTC+AGG | + | chr4_4:49461262-49461281 | Msa0685340:intron | 15.0% |
| !! | TCTATATTGTTACAAATATA+AGG | - | chr4_4:49462332-49462351 | None:intergenic | 15.0% |
| !!! | CTATGTTTTAAAAAAATGAA+TGG | - | chr4_4:49463553-49463572 | None:intergenic | 15.0% |
| !!! | CATTCATTTTTTTAAAACAT+AGG | + | chr4_4:49463551-49463570 | Msa0685340:intron | 15.0% |
| !!! | TTGTTTTGTTTTATATTTTG+AGG | + | chr4_4:49463978-49463997 | Msa0685340:intron | 15.0% |
| !! | TAAGAAATATTACAATTATG+TGG | - | chr4_4:49464397-49464416 | None:intergenic | 15.0% |
| !!! | ATCTCATTCTTTTTAAATTA+AGG | + | chr4_4:49464635-49464654 | Msa0685340:intron | 15.0% |
| !! | GTTACAAATTTATGATATAT+TGG | - | chr4_4:49464773-49464792 | None:intergenic | 15.0% |
| !!! | TTGTGTTTTTTTTTTTTTTG+AGG | + | chr4_4:49464973-49464992 | Msa0685340:intron | 15.0% |
| !! | ATTGTGATCAAATAAGTTTA+GGG | - | chr4_4:49460479-49460498 | None:intergenic | 20.0% |
| !!! | TTTATTTTTCAAAACTTGGT+TGG | + | chr4_4:49460520-49460539 | Msa0685340:intron | 20.0% |
| !!! | TTTTGGTAATTAAAGTAGAA+AGG | - | chr4_4:49460945-49460964 | None:intergenic | 20.0% |
| !! | TGTTTATCATGTTTACTTAA+TGG | + | chr4_4:49461149-49461168 | Msa0685340:intron | 20.0% |
| !!! | ATTATATTGTTTTTGTAGGT+CGG | + | chr4_4:49461434-49461453 | Msa0685340:intron | 20.0% |
| !! | TATTGTTACAAATATAAGGA+GGG | - | chr4_4:49462328-49462347 | None:intergenic | 20.0% |
| !! | ATATTGTTACAAATATAAGG+AGG | - | chr4_4:49462329-49462348 | None:intergenic | 20.0% |
| !! | AAGTTCAAAAAAGAAATATG+TGG | + | chr4_4:49462418-49462437 | Msa0685340:CDS | 20.0% |
| !!! | AATATAAATCTATTTGCTAC+TGG | - | chr4_4:49463180-49463199 | None:intergenic | 20.0% |
| !!! | ATTACTAATTTTGTCTTTTC+TGG | + | chr4_4:49463486-49463505 | Msa0685340:intron | 20.0% |
| !!! | ATGATTCAACAAATTTTTTC+TGG | + | chr4_4:49463603-49463622 | Msa0685340:CDS | 20.0% |
| !!! | AGATCATCATATTTTTAAGT+CGG | + | chr4_4:49463851-49463870 | Msa0685340:intron | 20.0% |
| !! | GATATTTGTGAGTTAAAATT+TGG | + | chr4_4:49464084-49464103 | Msa0685340:intron | 20.0% |
| !! | ATATTAGGGTTTAAATTACA+TGG | - | chr4_4:49464179-49464198 | None:intergenic | 20.0% |
| !! | TTCTAAATCTATAAATGAAG+TGG | - | chr4_4:49464359-49464378 | None:intergenic | 20.0% |
| !! | ATAAATTTGTAACAAACTCA+GGG | + | chr4_4:49464780-49464799 | Msa0685340:intron | 20.0% |
| !!! | TTTGTTAATGTTTTAGAATC+TGG | - | chr4_4:49464886-49464905 | None:intergenic | 20.0% |
| !! | AGAAATTTGCAAATATTTGT+TGG | - | chr4_4:49464936-49464955 | None:intergenic | 20.0% |
| ! | TCTATAATTCAGATAAGAGA+GGG | - | chr4_4:49460321-49460340 | None:intergenic | 25.0% |
| ! | TTCTATAATTCAGATAAGAG+AGG | - | chr4_4:49460322-49460341 | None:intergenic | 25.0% |
| !!! | TTTGATTTGTCTTGAATGAT+TGG | - | chr4_4:49460433-49460452 | None:intergenic | 25.0% |
| ! | TCAAGACAAATCAAAAGAAA+AGG | + | chr4_4:49460438-49460457 | Msa0685340:five_prime_UTR | 25.0% |
| ! | GATTGTGATCAAATAAGTTT+AGG | - | chr4_4:49460480-49460499 | None:intergenic | 25.0% |
| ! | CTCATATTATAGTAAGGTAT+TGG | - | chr4_4:49460575-49460594 | None:intergenic | 25.0% |
| ! | ATACCTTACTATAATATGAG+TGG | + | chr4_4:49460575-49460594 | Msa0685340:intron | 25.0% |
| ! | AAGTCAGCAATATAATATGT+TGG | - | chr4_4:49461120-49461139 | None:intergenic | 25.0% |
| ! | AACATAACTTACCATTATTG+AGG | - | chr4_4:49461609-49461628 | None:intergenic | 25.0% |
| ! | CTAGATATGAAATGATTCAA+TGG | - | chr4_4:49461703-49461722 | None:intergenic | 25.0% |
| !!! | ATTCATTCCATTTTTACTTC+CGG | + | chr4_4:49461914-49461933 | Msa0685340:CDS | 25.0% |
| ! | TGTAAAAAATCAGCTAATGT+AGG | - | chr4_4:49462021-49462040 | None:intergenic | 25.0% |
| ! | AAACTCAAACTCATTAATTG+AGG | + | chr4_4:49462286-49462305 | Msa0685340:intron | 25.0% |
| ! | AAGAAATATGTGGCTAAAAA+TGG | + | chr4_4:49462428-49462447 | Msa0685340:CDS | 25.0% |
| ! | AAAAAAAGCAAGAAGGAAAA+TGG | + | chr4_4:49462461-49462480 | Msa0685340:CDS | 25.0% |
| ! | TTCTCAATCAATTTCTCTTA+GGG | + | chr4_4:49462671-49462690 | Msa0685340:CDS | 25.0% |
| !! | TCTTAGCAATTGTTATTAGT+AGG | + | chr4_4:49462767-49462786 | Msa0685340:intron | 25.0% |
| !! | AATTGTTATTAGTAGGCTTA+TGG | + | chr4_4:49462774-49462793 | Msa0685340:intron | 25.0% |
| ! | ATGATGGTAAATAAGATGTT+TGG | - | chr4_4:49463157-49463176 | None:intergenic | 25.0% |
| !! | TTTAAAATATTTAGCTGCAG+TGG | + | chr4_4:49463205-49463224 | Msa0685340:intron | 25.0% |
| !!! | ACTTTTAGTTCAAATGATGA+TGG | + | chr4_4:49463271-49463290 | Msa0685340:CDS | 25.0% |
| !! | TATACAATTCCCATTCTTTT+AGG | + | chr4_4:49463353-49463372 | Msa0685340:CDS | 25.0% |
| !! | ATACAATTCCCATTCTTTTA+GGG | + | chr4_4:49463354-49463373 | Msa0685340:CDS | 25.0% |
| !! | GAATACCTCATAAAACTTTT+CGG | - | chr4_4:49463416-49463435 | None:intergenic | 25.0% |
| !! | ATTTTGTCTTTTCTGGATTT+AGG | + | chr4_4:49463493-49463512 | Msa0685340:intron | 25.0% |
| ! | GTTGAATCATTGTAAAATCT+AGG | - | chr4_4:49463593-49463612 | None:intergenic | 25.0% |
| ! | TAAAATGTTATTCCACATCA+AGG | - | chr4_4:49463802-49463821 | None:intergenic | 25.0% |
| !!! | TTTTGAGGTCTATATTCATT+TGG | + | chr4_4:49463993-49464012 | Msa0685340:intron | 25.0% |
| !! | TGTATAAAATGGATTCTCAA+GGG | - | chr4_4:49464248-49464267 | None:intergenic | 25.0% |
| !! | TTGTATAAAATGGATTCTCA+AGG | - | chr4_4:49464249-49464268 | None:intergenic | 25.0% |
| !! | TTGAGAATCCATTTTATACA+AGG | + | chr4_4:49464248-49464267 | Msa0685340:intron | 25.0% |
| !! | TGAGAATCCATTTTATACAA+GGG | + | chr4_4:49464249-49464268 | Msa0685340:intron | 25.0% |
| ! | ATATGACGTAAAAACTTTCA+AGG | + | chr4_4:49464300-49464319 | Msa0685340:intron | 25.0% |
| ! | ATTTATGATATATTGGAGAC+TGG | - | chr4_4:49464766-49464785 | None:intergenic | 25.0% |
| ! | CATAAATTTGTAACAAACTC+AGG | + | chr4_4:49464779-49464798 | Msa0685340:intron | 25.0% |
| ! | TCTTATATTTGCTTAGAATC+TGG | - | chr4_4:49464910-49464929 | None:intergenic | 25.0% |
| ! | AGATTCTAAGCAAATATAAG+AGG | + | chr4_4:49464909-49464928 | Msa0685340:intron | 25.0% |
| ! | GATTCTAAGCAAATATAAGA+GGG | + | chr4_4:49464910-49464929 | Msa0685340:intron | 25.0% |
| ! | TTTATTTCCAGAGTAACAAA+AGG | + | chr4_4:49465138-49465157 | Msa0685340:intron | 25.0% |
| ! | TTATTTCCAGAGTAACAAAA+GGG | + | chr4_4:49465139-49465158 | Msa0685340:intron | 25.0% |
| AAGCCACTCATATTATAGTA+AGG | - | chr4_4:49460581-49460600 | None:intergenic | 30.0% | |
| CTTATGTTTAACTATCTCTC+TGG | + | chr4_4:49460610-49460629 | Msa0685340:intron | 30.0% | |
| GTTGTTTGAAGAAATTGAAG+TGG | + | chr4_4:49460751-49460770 | Msa0685340:intron | 30.0% | |
| TTATACTACTCTATACAGCA+TGG | - | chr4_4:49460790-49460809 | None:intergenic | 30.0% | |
| GTATAATGATTACTCGTGTT+TGG | + | chr4_4:49460804-49460823 | Msa0685340:intron | 30.0% | |
| TTGCAGATTGAATGAAGTTA+GGG | + | chr4_4:49460890-49460909 | Msa0685340:intron | 30.0% | |
| !! | GGTTTATTTAAGGTCAGTTT+TGG | - | chr4_4:49460962-49460981 | None:intergenic | 30.0% |
| ATAGAGAGGTGGTTTATTTA+AGG | - | chr4_4:49460972-49460991 | None:intergenic | 30.0% | |
| ! | TTTAAAACAGAGAGATAGAG+AGG | - | chr4_4:49460986-49461005 | None:intergenic | 30.0% |
| TATCATCAAAAAGATCCATG+AGG | - | chr4_4:49461296-49461315 | None:intergenic | 30.0% | |
| TAACTTACCATTATTGAGGT+TGG | - | chr4_4:49461605-49461624 | None:intergenic | 30.0% | |
| ! | GCATTGACAACTATTAAATG+TGG | + | chr4_4:49461722-49461741 | Msa0685340:intron | 30.0% |
| AATGGAATGAATGTTGTTCT+CGG | - | chr4_4:49461906-49461925 | None:intergenic | 30.0% | |
| ! | TACTTTTCCGGAAGTAAAAA+TGG | - | chr4_4:49461924-49461943 | None:intergenic | 30.0% |
| ! | AATGTCTACTTCTTTTCCTA+TGG | - | chr4_4:49462055-49462074 | None:intergenic | 30.0% |
| TTTATTAGGATGCTAATGAG+AGG | + | chr4_4:49462156-49462175 | Msa0685340:intron | 30.0% | |
| ATGAGAGGAAAAAATCTCTA+AGG | + | chr4_4:49462171-49462190 | Msa0685340:CDS | 30.0% | |
| TCATTAATTGAGGATGATGA+TGG | + | chr4_4:49462296-49462315 | Msa0685340:intron | 30.0% | |
| AGCATACAAAAAAAGCAAGA+AGG | + | chr4_4:49462454-49462473 | Msa0685340:CDS | 30.0% | |
| ! | GAAGAATGAGAGAACTTTTT+GGG | - | chr4_4:49462512-49462531 | None:intergenic | 30.0% |
| ! | AGAAGAATGAGAGAACTTTT+TGG | - | chr4_4:49462513-49462532 | None:intergenic | 30.0% |
| AAAAGTTCTCTCATTCTTCT+CGG | + | chr4_4:49462513-49462532 | Msa0685340:CDS | 30.0% | |
| GTTCTCAATCAATTTCTCTT+AGG | + | chr4_4:49462670-49462689 | Msa0685340:CDS | 30.0% | |
| TCTTGCAATTGCAGAAAATA+AGG | + | chr4_4:49462698-49462717 | Msa0685340:CDS | 30.0% | |
| TTGCTAAGAATTGTAACACA+AGG | - | chr4_4:49462756-49462775 | None:intergenic | 30.0% | |
| GTGTATTATCAAAGCAGTAT+TGG | + | chr4_4:49462889-49462908 | Msa0685340:intron | 30.0% | |
| CACACATATCTTAACTTCTT+AGG | - | chr4_4:49462948-49462967 | None:intergenic | 30.0% | |
| AAATCGTGAAAGCTAACAAA+GGG | - | chr4_4:49463011-49463030 | None:intergenic | 30.0% | |
| TAAATCGTGAAAGCTAACAA+AGG | - | chr4_4:49463012-49463031 | None:intergenic | 30.0% | |
| AGAATGGGAATTGTATAAAG+CGG | - | chr4_4:49463350-49463369 | None:intergenic | 30.0% | |
| !! | AGATACCGAAAAGTTTTATG+AGG | + | chr4_4:49463408-49463427 | Msa0685340:CDS | 30.0% |
| !!! | TTTTAAAACATAGGCTCTGA+AGG | + | chr4_4:49463560-49463579 | Msa0685340:intron | 30.0% |
| TTATTCGTAAAGGATGATGT+CGG | - | chr4_4:49463671-49463690 | None:intergenic | 30.0% | |
| ATAGCATCAGTTATTCGTAA+AGG | - | chr4_4:49463681-49463700 | None:intergenic | 30.0% | |
| TCATATAGTACATGATCAGT+AGG | + | chr4_4:49463755-49463774 | Msa0685340:intron | 30.0% | |
| CATATAGTACATGATCAGTA+GGG | + | chr4_4:49463756-49463775 | Msa0685340:intron | 30.0% | |
| !!! | CCAAGTAAAAGTGCTAATTT+TGG | - | chr4_4:49464128-49464147 | None:intergenic | 30.0% |
| ! | CCAAAATTAGCACTTTTACT+TGG | + | chr4_4:49464125-49464144 | Msa0685340:intron | 30.0% |
| GAAGTAAATTTGAGTAACGA+AGG | - | chr4_4:49464157-49464176 | None:intergenic | 30.0% | |
| TATACGCTGCTTCTATATTA+GGG | - | chr4_4:49464193-49464212 | None:intergenic | 30.0% | |
| ATATACGCTGCTTCTATATT+AGG | - | chr4_4:49464194-49464213 | None:intergenic | 30.0% | |
| TGTTGTTCCCTTGTATAAAA+TGG | - | chr4_4:49464259-49464278 | None:intergenic | 30.0% | |
| GTCATATCACATATACATGA+TGG | - | chr4_4:49464287-49464306 | None:intergenic | 30.0% | |
| AAGAGTCTTGAATATTTGCA+AGG | - | chr4_4:49464432-49464451 | None:intergenic | 30.0% | |
| ! | ATGATAGTGATGATGACTTA+CGG | + | chr4_4:49464554-49464573 | Msa0685340:CDS | 30.0% |
| GCTATTTATTTGTGTTCTAC+TGG | + | chr4_4:49464802-49464821 | Msa0685340:intron | 30.0% | |
| AAGCAAATTTCTCTGATAAG+AGG | + | chr4_4:49464859-49464878 | Msa0685340:intron | 30.0% | |
| ! | GTTCTTAACTTGGAAAGATT+TGG | - | chr4_4:49465173-49465192 | None:intergenic | 30.0% |
| ! | TTAAGAACAACTAGTGGTTT+TGG | + | chr4_4:49465185-49465204 | Msa0685340:CDS | 30.0% |
| !! | AACGAGAATGATGGATACAT+TGG | - | chr4_4:49460670-49460689 | None:intergenic | 35.0% |
| AAGCATGTAAACGAGAATGA+TGG | - | chr4_4:49460679-49460698 | None:intergenic | 35.0% | |
| CTTGCAGATTGAATGAAGTT+AGG | + | chr4_4:49460889-49460908 | Msa0685340:intron | 35.0% | |
| !! | GTTTTAAATTCAAACCACGC+CGG | + | chr4_4:49460998-49461017 | Msa0685340:intron | 35.0% |
| AATCACATAGAAGACATAGC+CGG | - | chr4_4:49461020-49461039 | None:intergenic | 35.0% | |
| !! | TTCCCGGTTTTTAACTATTG+CGG | + | chr4_4:49461072-49461091 | Msa0685340:intron | 35.0% |
| CGTAAGCAATAAAGTGGAAA+GGG | - | chr4_4:49461187-49461206 | None:intergenic | 35.0% | |
| CCTTTCCACTTTATTGCTTA+CGG | + | chr4_4:49461185-49461204 | Msa0685340:intron | 35.0% | |
| !!! | GACTGTTTTGATTTGACCTT+CGG | - | chr4_4:49461478-49461497 | None:intergenic | 35.0% |
| ATCAAAACAGTCCTTACGAA+AGG | + | chr4_4:49461486-49461505 | Msa0685340:CDS | 35.0% | |
| TGCAGATATTTCCTTTCGTA+AGG | - | chr4_4:49461500-49461519 | None:intergenic | 35.0% | |
| ! | TTCTACCTCTTGTACTTTTC+CGG | - | chr4_4:49461936-49461955 | None:intergenic | 35.0% |
| AATCAGCTAATGTAGGACTA+CGG | - | chr4_4:49462014-49462033 | None:intergenic | 35.0% | |
| ATGACTGTGATAAAAGCTCA+AGG | + | chr4_4:49462228-49462247 | Msa0685340:CDS | 35.0% | |
| ! | ACTTGAAGAAAATGATGACG+AGG | + | chr4_4:49462355-49462374 | Msa0685340:CDS | 35.0% |
| ! | AAGTATTTTCATTCCCACAG+TGG | + | chr4_4:49462617-49462636 | Msa0685340:intron | 35.0% |
| TTTCTGCATAGGGAAACAAA+TGG | - | chr4_4:49462820-49462839 | None:intergenic | 35.0% | |
| TTGTTTCCCTATGCAGAAAA+AGG | + | chr4_4:49462821-49462840 | Msa0685340:intron | 35.0% | |
| TCGTTGTATGTGATTGAGTT+AGG | + | chr4_4:49462973-49462992 | Msa0685340:intron | 35.0% | |
| ! | ATCTATTTGCTACTGGATGA+TGG | - | chr4_4:49463173-49463192 | None:intergenic | 35.0% |
| AAAATATTTAGCTGCAGTGG+TGG | + | chr4_4:49463208-49463227 | Msa0685340:intron | 35.0% | |
| AAATATTTAGCTGCAGTGGT+GGG | + | chr4_4:49463209-49463228 | Msa0685340:intron | 35.0% | |
| ! | TACTAGCTTGATCATACTCT+TGG | - | chr4_4:49463306-49463325 | None:intergenic | 35.0% |
| ! | TGACTTGTCCCTAAAAGAAT+GGG | - | chr4_4:49463365-49463384 | None:intergenic | 35.0% |
| ! | GTCTTTTCTGGATTTAGGAA+TGG | + | chr4_4:49463498-49463517 | Msa0685340:intron | 35.0% |
| GCTATTAATAGTCGTTCATC+AGG | + | chr4_4:49463696-49463715 | Msa0685340:CDS | 35.0% | |
| TCTTTATCTACTCCTTGATG+TGG | + | chr4_4:49463787-49463806 | Msa0685340:intron | 35.0% | |
| GCATTAGTGGTAGAAATTTG+TGG | - | chr4_4:49463891-49463910 | None:intergenic | 35.0% | |
| TTCTACCACTAATGCAAATC+AGG | + | chr4_4:49463896-49463915 | Msa0685340:CDS | 35.0% | |
| AGAGTGCATACATTAATTCC+AGG | - | chr4_4:49463954-49463973 | None:intergenic | 35.0% | |
| ACATATGAAACACATATGCC+TGG | - | chr4_4:49464727-49464746 | None:intergenic | 35.0% | |
| !!! | TTGTGTTCTACTGGTTTTGT+AGG | + | chr4_4:49464811-49464830 | Msa0685340:intron | 35.0% |
| !!! | TGTGTTCTACTGGTTTTGTA+GGG | + | chr4_4:49464812-49464831 | Msa0685340:intron | 35.0% |
| TCCAAGTTAAGAACAACTAG+TGG | + | chr4_4:49465179-49465198 | Msa0685340:CDS | 35.0% | |
| ACCACTAGTTGTTCTTAACT+TGG | - | chr4_4:49465183-49465202 | None:intergenic | 35.0% | |
| GGAAAATGAGAGTGAAGAGA+GGG | - | chr4_4:49460291-49460310 | None:intergenic | 40.0% | |
| TGGAAAATGAGAGTGAAGAG+AGG | - | chr4_4:49460292-49460311 | None:intergenic | 40.0% | |
| CAGATAAGAGAGGGAAATTG+TGG | - | chr4_4:49460312-49460331 | None:intergenic | 40.0% | |
| AATTCAGAAGAGAGGAAGCA+GGG | - | chr4_4:49460353-49460372 | None:intergenic | 40.0% | |
| AAATTCAGAAGAGAGGAAGC+AGG | - | chr4_4:49460354-49460373 | None:intergenic | 40.0% | |
| GATTGAATGAAGTTAGGGCA+AGG | + | chr4_4:49460895-49460914 | Msa0685340:intron | 40.0% | |
| AAGTTAGGGCAAGGATGTAA+AGG | + | chr4_4:49460904-49460923 | Msa0685340:intron | 40.0% | |
| AAAACAGAGAGATAGAGAGG+TGG | - | chr4_4:49460983-49461002 | None:intergenic | 40.0% | |
| !! | TCCTGGTTTTCGATTTTTCC+CGG | + | chr4_4:49461056-49461075 | Msa0685340:intron | 40.0% |
| GTCCGCAATAGTTAAAAACC+GGG | - | chr4_4:49461077-49461096 | None:intergenic | 40.0% | |
| CGTCCGCAATAGTTAAAAAC+CGG | - | chr4_4:49461078-49461097 | None:intergenic | 40.0% | |
| TATTGCGGACGCTATTACAT+TGG | + | chr4_4:49461087-49461106 | Msa0685340:intron | 40.0% | |
| CCGTAAGCAATAAAGTGGAA+AGG | - | chr4_4:49461188-49461207 | None:intergenic | 40.0% | |
| CCATACCGTAAGCAATAAAG+TGG | - | chr4_4:49461193-49461212 | None:intergenic | 40.0% | |
| CCACTTTATTGCTTACGGTA+TGG | + | chr4_4:49461190-49461209 | Msa0685340:intron | 40.0% | |
| ATCAAAAAGATCCATGAGGC+AGG | - | chr4_4:49461292-49461311 | None:intergenic | 40.0% | |
| ACGTACGGTTGTTATGTACT+TGG | + | chr4_4:49461384-49461403 | Msa0685340:intron | 40.0% | |
| !! | ACCATTATTGAGGTTGGTCT+CGG | - | chr4_4:49461599-49461618 | None:intergenic | 40.0% |
| ! | GCAAACTTTTGTTGCTGTCA+AGG | - | chr4_4:49461808-49461827 | None:intergenic | 40.0% |
| TTGCAAGACAGCCTAAATGT+TGG | + | chr4_4:49461842-49461861 | Msa0685340:CDS | 40.0% | |
| !! | CACTTCTGAAGCCAACATTT+AGG | - | chr4_4:49461856-49461875 | None:intergenic | 40.0% |
| ! | TACTTCCGGAAAAGTACAAG+AGG | + | chr4_4:49461928-49461947 | Msa0685340:CDS | 40.0% |
| TTACAGCAAGACGTTACCAT+AGG | + | chr4_4:49462036-49462055 | Msa0685340:intron | 40.0% | |
| CGTAAAAGATCATCTGTTGC+TGG | + | chr4_4:49462197-49462216 | Msa0685340:CDS | 40.0% | |
| !! | GAATGAGAGAACTTTTTGGG+TGG | - | chr4_4:49462509-49462528 | None:intergenic | 40.0% |
| CTGCTGGATGATTATGAACT+TGG | + | chr4_4:49462648-49462667 | Msa0685340:CDS | 40.0% | |
| TAGTTGAGAATACCTACCTC+CGG | - | chr4_4:49462729-49462748 | None:intergenic | 40.0% | |
| TTTCCCTATGCAGAAAAAGG+AGG | + | chr4_4:49462824-49462843 | Msa0685340:intron | 40.0% | |
| ! | TTGCCTCCTTTTTCTGCATA+GGG | - | chr4_4:49462830-49462849 | None:intergenic | 40.0% |
| ! | TTTGCCTCCTTTTTCTGCAT+AGG | - | chr4_4:49462831-49462850 | None:intergenic | 40.0% |
| CAAAATCTTCCACCAATCGA+AGG | + | chr4_4:49462847-49462866 | Msa0685340:CDS | 40.0% | |
| AATTCACTGCACATCTTACG+TGG | + | chr4_4:49463129-49463148 | Msa0685340:intron | 40.0% | |
| AATATTTAGCTGCAGTGGTG+GGG | + | chr4_4:49463210-49463229 | Msa0685340:intron | 40.0% | |
| ! | GTGACTTGTCCCTAAAAGAA+TGG | - | chr4_4:49463366-49463385 | None:intergenic | 40.0% |
| !! | TTTTAGGGACAAGTCACCTA+GGG | + | chr4_4:49463369-49463388 | Msa0685340:CDS | 40.0% |
| ACAAGTCACCTAGGGTAAAA+TGG | + | chr4_4:49463377-49463396 | Msa0685340:CDS | 40.0% | |
| ! | TGTTTCGACCATTTTACCCT+AGG | - | chr4_4:49463388-49463407 | None:intergenic | 40.0% |
| TTACTTGTCTGTGCTCTTCA+TGG | + | chr4_4:49463732-49463751 | Msa0685340:intron | 40.0% | |
| ! | AAAATGGATTCTCAAGGGAG+CGG | - | chr4_4:49464243-49464262 | None:intergenic | 40.0% |
| ATGTGCGTCTTTATTGTGCT+AGG | - | chr4_4:49464331-49464350 | None:intergenic | 40.0% | |
| CTCTTGTAATCTGAATGTGC+AGG | + | chr4_4:49464447-49464466 | Msa0685340:intron | 40.0% | |
| TAATCTGAATGTGCAGGAAG+AGG | + | chr4_4:49464453-49464472 | Msa0685340:intron | 40.0% | |
| !! | CAGTGCTGATGTTAAAGATC+AGG | + | chr4_4:49464495-49464514 | Msa0685340:CDS | 40.0% |
| TGCTGATGTTAAAGATCAGG+AGG | + | chr4_4:49464498-49464517 | Msa0685340:CDS | 40.0% | |
| TCTGGACTATGATAAGCCAT+GGG | - | chr4_4:49464526-49464545 | None:intergenic | 40.0% | |
| TCACTATCATCAGATTGCTC+TGG | - | chr4_4:49464544-49464563 | None:intergenic | 40.0% | |
| ! | GTGATGATGACTTACGGAAA+TGG | + | chr4_4:49464560-49464579 | Msa0685340:CDS | 40.0% |
| GTAATACTTTCTCGAAGTCC+AGG | + | chr4_4:49464706-49464725 | Msa0685340:intron | 40.0% | |
| ! | TGAGAACCCTTTTGTTACTC+TGG | - | chr4_4:49465148-49465167 | None:intergenic | 40.0% |
| !!! | AGAACAACTAGTGGTTTTGG+TGG | + | chr4_4:49465188-49465207 | Msa0685340:CDS | 40.0% |
| AGAGCAAAGGGTGAGAAACA+AGG | - | chr4_4:49460262-49460281 | None:intergenic | 45.0% | |
| AGAGGGAGGAAAAGAGCAAA+GGG | - | chr4_4:49460274-49460293 | None:intergenic | 45.0% | |
| AAATGAGAGTGAAGAGAGGG+AGG | - | chr4_4:49460288-49460307 | None:intergenic | 45.0% | |
| GACATCAAACCCCAACTTTC+CGG | + | chr4_4:49460395-49460414 | Msa0685340:five_prime_UTR | 45.0% | |
| TATCTCCCTGTAGCACTTCT+TGG | + | chr4_4:49460724-49460743 | Msa0685340:intron | 45.0% | |
| !! | CTATGCCAAGAAGTGCTACA+GGG | - | chr4_4:49460732-49460751 | None:intergenic | 45.0% |
| !! | ACTATGCCAAGAAGTGCTAC+AGG | - | chr4_4:49460733-49460752 | None:intergenic | 45.0% |
| ACTCGCTTGCGACTTAAGAA+GGG | - | chr4_4:49460856-49460875 | None:intergenic | 45.0% | |
| TACTCGCTTGCGACTTAAGA+AGG | - | chr4_4:49460857-49460876 | None:intergenic | 45.0% | |
| CAAGGATGTAAAGGCCTAGT+CGG | + | chr4_4:49460913-49460932 | Msa0685340:intron | 45.0% | |
| TAGAAAGGAGAAGACCGACT+AGG | - | chr4_4:49460930-49460949 | None:intergenic | 45.0% | |
| ACCGGGAAAAATCGAAAACC+AGG | - | chr4_4:49461060-49461079 | None:intergenic | 45.0% | |
| TTATTGCTTACGGTATGGCG+AGG | + | chr4_4:49461195-49461214 | Msa0685340:intron | 45.0% | |
| TGCTGCACGTGGTTAGTAAT+GGG | + | chr4_4:49461332-49461351 | Msa0685340:intron | 45.0% | |
| ATGCTACCTCGTCTGTAGAT+GGG | + | chr4_4:49461527-49461546 | Msa0685340:CDS | 45.0% | |
| ! | AATGGATTTAGTGACGGTGG+GGG | - | chr4_4:49461575-49461594 | None:intergenic | 45.0% |
| ! | GAATGGATTTAGTGACGGTG+GGG | - | chr4_4:49461576-49461595 | None:intergenic | 45.0% |
| ! | GGAATGGATTTAGTGACGGT+GGG | - | chr4_4:49461577-49461596 | None:intergenic | 45.0% |
| ! | CTCGGGAATGGATTTAGTGA+CGG | - | chr4_4:49461581-49461600 | None:intergenic | 45.0% |
| !! | CCATTATTGAGGTTGGTCTC+GGG | - | chr4_4:49461598-49461617 | None:intergenic | 45.0% |
| TGTCAAGGAATGCAGTGGAT+GGG | - | chr4_4:49461793-49461812 | None:intergenic | 45.0% | |
| AAGATCATCTGTTGCTGGTG+TGG | + | chr4_4:49462202-49462221 | Msa0685340:CDS | 45.0% | |
| ! | AAATGATGACGAGGACGAAG+TGG | + | chr4_4:49462364-49462383 | Msa0685340:CDS | 45.0% |
| TCTCGGCGAAGAAAAAGACA+AGG | + | chr4_4:49462530-49462549 | Msa0685340:CDS | 45.0% | |
| TGCAGAAAATAAGGAGCGAC+CGG | + | chr4_4:49462707-49462726 | Msa0685340:CDS | 45.0% | |
| ! | TGTTGCTTACCTTCGATTGG+TGG | - | chr4_4:49462859-49462878 | None:intergenic | 45.0% |
| !! | CTGTGTTGCTTACCTTCGAT+TGG | - | chr4_4:49462862-49462881 | None:intergenic | 45.0% |
| GGGGATTTCTTTCATGATGC+TGG | + | chr4_4:49463229-49463248 | Msa0685340:CDS | 45.0% | |
| ! | TGCTGGTGCTAATAGTGAAG+AGG | + | chr4_4:49463246-49463265 | Msa0685340:CDS | 45.0% |
| !! | CTTTTAGGGACAAGTCACCT+AGG | + | chr4_4:49463368-49463387 | Msa0685340:CDS | 45.0% |
| !! | ACATAGGCTCTGAAGGAGTT+TGG | + | chr4_4:49463567-49463586 | Msa0685340:intron | 45.0% |
| ! | GGCTTCCTGATTTGCATTAG+TGG | - | chr4_4:49463904-49463923 | None:intergenic | 45.0% |
| GTCTTCAGTAGTGTCTTCAG+TGG | - | chr4_4:49463925-49463944 | None:intergenic | 45.0% | |
| ACTACTGAAGACATGTCACC+TGG | + | chr4_4:49463933-49463952 | Msa0685340:CDS | 45.0% | |
| ! | AAATGGATTCTCAAGGGAGC+GGG | - | chr4_4:49464242-49464261 | None:intergenic | 45.0% |
| TAAAGATCAGGAGGATCCCA+TGG | + | chr4_4:49464507-49464526 | Msa0685340:CDS | 45.0% | |
| CTCTGGACTATGATAAGCCA+TGG | - | chr4_4:49464527-49464546 | None:intergenic | 45.0% | |
| !!! | TGGTTTTGTAGGGAGACTGT+TGG | + | chr4_4:49464822-49464841 | Msa0685340:intron | 45.0% |
| !!! | ACAACTAGTGGTTTTGGTGG+TGG | + | chr4_4:49465191-49465210 | Msa0685340:CDS | 45.0% |
| GAGAGGGAGGAAAAGAGCAA+AGG | - | chr4_4:49460275-49460294 | None:intergenic | 50.0% | |
| GGCTGCGAAATTCAGAAGAG+AGG | - | chr4_4:49460361-49460380 | None:intergenic | 50.0% | |
| !! | TGATGTCGCGATTTCGGGTT+CGG | - | chr4_4:49460382-49460401 | None:intergenic | 50.0% |
| GGGTTTGATGTCGCGATTTC+GGG | - | chr4_4:49460387-49460406 | None:intergenic | 50.0% | |
| GGGGTTTGATGTCGCGATTT+CGG | - | chr4_4:49460388-49460407 | None:intergenic | 50.0% | |
| ATCAAACCCCAACTTTCCGG+TGG | + | chr4_4:49460398-49460417 | Msa0685340:five_prime_UTR | 50.0% | |
| AGCGAATCCACCGGAAAGTT+GGG | - | chr4_4:49460408-49460427 | None:intergenic | 50.0% | |
| TGATTGGACAGCGAATCCAC+CGG | - | chr4_4:49460417-49460436 | None:intergenic | 50.0% | |
| TTATCACCGCTTCTCTGTCC+TGG | + | chr4_4:49461039-49461058 | Msa0685340:intron | 50.0% | |
| CGAAAACCAGGACAGAGAAG+CGG | - | chr4_4:49461048-49461067 | None:intergenic | 50.0% | |
| CATTACTAACCACGTGCAGC+AGG | - | chr4_4:49461333-49461352 | None:intergenic | 50.0% | |
| CTGCTGCACGTGGTTAGTAA+TGG | + | chr4_4:49461331-49461350 | Msa0685340:intron | 50.0% | |
| TTTGACCTTCGGCGCAAACT+TGG | - | chr4_4:49461467-49461486 | None:intergenic | 50.0% | |
| CATGCTACCTCGTCTGTAGA+TGG | + | chr4_4:49461526-49461545 | Msa0685340:CDS | 50.0% | |
| GTTCTTCCCATCTACAGACG+AGG | - | chr4_4:49461536-49461555 | None:intergenic | 50.0% | |
| ! | GGGAATGGATTTAGTGACGG+TGG | - | chr4_4:49461578-49461597 | None:intergenic | 50.0% |
| !! | ATTGAGGTTGGTCTCGGGAA+TGG | - | chr4_4:49461593-49461612 | None:intergenic | 50.0% |
| CCCGAGACCAACCTCAATAA+TGG | + | chr4_4:49461595-49461614 | Msa0685340:CDS | 50.0% | |
| GTCAAGGAATGCAGTGGATG+GGG | - | chr4_4:49461792-49461811 | None:intergenic | 50.0% | |
| CTGTCAAGGAATGCAGTGGA+TGG | - | chr4_4:49461794-49461813 | None:intergenic | 50.0% | |
| GTTGCTGTCAAGGAATGCAG+TGG | - | chr4_4:49461798-49461817 | None:intergenic | 50.0% | |
| !! | GTTGGCTTCAGAAGTGCTTC+AGG | + | chr4_4:49461860-49461879 | Msa0685340:CDS | 50.0% |
| ATCATCTGTTGCTGGTGTGG+AGG | + | chr4_4:49462205-49462224 | Msa0685340:CDS | 50.0% | |
| TTTCATTCCCACAGTGGACC+AGG | + | chr4_4:49462623-49462642 | Msa0685340:intron | 50.0% | |
| CATAATCATCCAGCAGAGCC+TGG | - | chr4_4:49462644-49462663 | None:intergenic | 50.0% | |
| AGAAAATAAGGAGCGACCGG+AGG | + | chr4_4:49462710-49462729 | Msa0685340:CDS | 50.0% | |
| ! | AATGGATTCTCAAGGGAGCG+GGG | - | chr4_4:49464241-49464260 | None:intergenic | 50.0% |
| GGAAGAGGTTGCAACAACTG+AGG | + | chr4_4:49464468-49464487 | Msa0685340:intron | 50.0% | |
| AGAGGTTGCAACAACTGAGG+AGG | + | chr4_4:49464471-49464490 | Msa0685340:CDS | 50.0% | |
| !!! | ACTAGTGGTTTTGGTGGTGG+CGG | + | chr4_4:49465194-49465213 | Msa0685340:CDS | 50.0% |
| GCGAATCCACCGGAAAGTTG+GGG | - | chr4_4:49460407-49460426 | None:intergenic | 55.0% | |
| CAGCGAATCCACCGGAAAGT+TGG | - | chr4_4:49460409-49460428 | None:intergenic | 55.0% | |
| CATAGAAGACATAGCCGGCG+TGG | - | chr4_4:49461015-49461034 | None:intergenic | 55.0% | |
| TCTCAGGCAAACCTGCCTCA+TGG | + | chr4_4:49461278-49461297 | Msa0685340:intron | 55.0% | |
| TTCGGCGCAAACTTGGCACT+AGG | - | chr4_4:49461460-49461479 | None:intergenic | 55.0% | |
| TAGTGCCAAGTTTGCGCCGA+AGG | + | chr4_4:49461459-49461478 | Msa0685340:CDS | 55.0% | |
| AATAAGGAGCGACCGGAGGT+AGG | + | chr4_4:49462714-49462733 | Msa0685340:intron | 55.0% | |
| ATGGATTCTCAAGGGAGCGG+GGG | - | chr4_4:49464240-49464259 | None:intergenic | 55.0% | |
| CTTGAAGCTCCTGCTGCACG+TGG | + | chr4_4:49461321-49461340 | Msa0685340:CDS | 60.0% | |
| AGCAGAGCCTGGTCCACTGT+GGG | - | chr4_4:49462633-49462652 | None:intergenic | 60.0% | |
| !!! | AGTGGTTTTGGTGGTGGCGG+TGG | + | chr4_4:49465197-49465216 | Msa0685340:CDS | 60.0% |
| CAGCAGAGCCTGGTCCACTG+TGG | - | chr4_4:49462634-49462653 | None:intergenic | 65.0% | |
| CACAGTGGACCAGGCTCTGC+TGG | + | chr4_4:49462632-49462651 | Msa0685340:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 49460240 | 49465223 | 49460240 | ID=Msa0685340;Name=Msa0685340 |
| chr4_4 | mRNA | 49460240 | 49465223 | 49460240 | ID=Msa0685340-mRNA-1;Parent=Msa0685340;Name=Msa0685340-mRNA-1;_AED=0.15;_eAED=0.15;_QI=237|0.71|0.6|0.93|0.64|0.6|15|0|526 |
| chr4_4 | exon | 49460240 | 49460463 | 49460240 | ID=Msa0685340-mRNA-1:exon:12421;Parent=Msa0685340-mRNA-1 |
| chr4_4 | exon | 49461284 | 49461342 | 49461284 | ID=Msa0685340-mRNA-1:exon:12422;Parent=Msa0685340-mRNA-1 |
| chr4_4 | exon | 49461452 | 49461616 | 49461452 | ID=Msa0685340-mRNA-1:exon:12423;Parent=Msa0685340-mRNA-1 |
| chr4_4 | exon | 49461756 | 49461949 | 49461756 | ID=Msa0685340-mRNA-1:exon:12424;Parent=Msa0685340-mRNA-1 |
| chr4_4 | exon | 49462164 | 49462280 | 49462164 | ID=Msa0685340-mRNA-1:exon:12425;Parent=Msa0685340-mRNA-1 |
| chr4_4 | exon | 49462308 | 49462551 | 49462308 | ID=Msa0685340-mRNA-1:exon:12426;Parent=Msa0685340-mRNA-1 |
| chr4_4 | exon | 49462637 | 49462731 | 49462637 | ID=Msa0685340-mRNA-1:exon:12427;Parent=Msa0685340-mRNA-1 |
| chr4_4 | exon | 49462837 | 49462868 | 49462837 | ID=Msa0685340-mRNA-1:exon:12428;Parent=Msa0685340-mRNA-1 |
| chr4_4 | exon | 49463219 | 49463429 | 49463219 | ID=Msa0685340-mRNA-1:exon:12429;Parent=Msa0685340-mRNA-1 |
| chr4_4 | exon | 49463573 | 49463717 | 49463573 | ID=Msa0685340-mRNA-1:exon:12430;Parent=Msa0685340-mRNA-1 |
| chr4_4 | exon | 49463853 | 49463962 | 49463853 | ID=Msa0685340-mRNA-1:exon:12431;Parent=Msa0685340-mRNA-1 |
| chr4_4 | exon | 49464469 | 49464597 | 49464469 | ID=Msa0685340-mRNA-1:exon:12432;Parent=Msa0685340-mRNA-1 |
| chr4_4 | exon | 49464657 | 49464662 | 49464657 | ID=Msa0685340-mRNA-1:exon:12433;Parent=Msa0685340-mRNA-1 |
| chr4_4 | exon | 49464697 | 49464705 | 49464697 | ID=Msa0685340-mRNA-1:exon:12434;Parent=Msa0685340-mRNA-1 |
| chr4_4 | exon | 49465149 | 49465223 | 49465149 | ID=Msa0685340-mRNA-1:exon:12435;Parent=Msa0685340-mRNA-1 |
| chr4_4 | five_prime_UTR | 49460240 | 49460463 | 49460240 | ID=Msa0685340-mRNA-1:five_prime_utr;Parent=Msa0685340-mRNA-1 |
| chr4_4 | five_prime_UTR | 49461284 | 49461296 | 49461284 | ID=Msa0685340-mRNA-1:five_prime_utr;Parent=Msa0685340-mRNA-1 |
| chr4_4 | CDS | 49461297 | 49461342 | 49461297 | ID=Msa0685340-mRNA-1:cds;Parent=Msa0685340-mRNA-1 |
| chr4_4 | CDS | 49461452 | 49461616 | 49461452 | ID=Msa0685340-mRNA-1:cds;Parent=Msa0685340-mRNA-1 |
| chr4_4 | CDS | 49461756 | 49461949 | 49461756 | ID=Msa0685340-mRNA-1:cds;Parent=Msa0685340-mRNA-1 |
| chr4_4 | CDS | 49462164 | 49462280 | 49462164 | ID=Msa0685340-mRNA-1:cds;Parent=Msa0685340-mRNA-1 |
| chr4_4 | CDS | 49462308 | 49462551 | 49462308 | ID=Msa0685340-mRNA-1:cds;Parent=Msa0685340-mRNA-1 |
| chr4_4 | CDS | 49462637 | 49462731 | 49462637 | ID=Msa0685340-mRNA-1:cds;Parent=Msa0685340-mRNA-1 |
| chr4_4 | CDS | 49462837 | 49462868 | 49462837 | ID=Msa0685340-mRNA-1:cds;Parent=Msa0685340-mRNA-1 |
| chr4_4 | CDS | 49463219 | 49463429 | 49463219 | ID=Msa0685340-mRNA-1:cds;Parent=Msa0685340-mRNA-1 |
| chr4_4 | CDS | 49463573 | 49463717 | 49463573 | ID=Msa0685340-mRNA-1:cds;Parent=Msa0685340-mRNA-1 |
| chr4_4 | CDS | 49463853 | 49463962 | 49463853 | ID=Msa0685340-mRNA-1:cds;Parent=Msa0685340-mRNA-1 |
| chr4_4 | CDS | 49464469 | 49464597 | 49464469 | ID=Msa0685340-mRNA-1:cds;Parent=Msa0685340-mRNA-1 |
| chr4_4 | CDS | 49464657 | 49464662 | 49464657 | ID=Msa0685340-mRNA-1:cds;Parent=Msa0685340-mRNA-1 |
| chr4_4 | CDS | 49464697 | 49464705 | 49464697 | ID=Msa0685340-mRNA-1:cds;Parent=Msa0685340-mRNA-1 |
| chr4_4 | CDS | 49465149 | 49465223 | 49465149 | ID=Msa0685340-mRNA-1:cds;Parent=Msa0685340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
