Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0685740 | TKY67501.1 | 52.326 | 86 | 19 | 4 | 6 | 79 | 1 | 76 | 2.91e-16 | 76.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0685740 | A0A151TG59 | 51.765 | 85 | 22 | 4 | 6 | 79 | 1 | 77 | 5.55e-16 | 75.1 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0504430 | Msa0685740 | 0.810073 | 1.381554e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0685740 | MtrunA17_Chr4g0034071 | 80.000 | 40 | 5 | 1 | 6 | 45 | 1 | 37 | 2.82e-16 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 10 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTCTGGACTTGTGGATATA+TGG | 0.370517 | 4_4:-49993866 | Msa0685740:CDS |
| AAAAGGAAAAGTGTCAAATT+CGG | 0.434942 | 4_4:-49993812 | Msa0685740:CDS |
| TGTAGTGATGTCTGGACTTG+TGG | 0.486271 | 4_4:-49993874 | Msa0685740:intron |
| TTGGCTAGCTTCATGTTGAG+TGG | 0.490734 | 4_4:+49993761 | None:intergenic |
| CAAACTGAGAGAAAGAGAAA+AGG | 0.506603 | 4_4:-49993829 | Msa0685740:CDS |
| GCCTCCGAAAATAGCAACCT+TGG | 0.509026 | 4_4:+49993702 | None:intergenic |
| GTTAAAACATTCAACAAGCA+TGG | 0.538679 | 4_4:+49993671 | None:intergenic |
| CCTTGGCTTGAAAATTTGCA+CGG | 0.560627 | 4_4:+49993719 | None:intergenic |
| ATGTTGAGTGGAGTTGCTAG+AGG | 0.603293 | 4_4:+49993773 | None:intergenic |
| TATTAGACTAGATAGTACCA+CGG | 0.761635 | 4_4:-49994506 | Msa0685740:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAAATTAAAATAATAAAA+TGG | + | chr4_4:49993967-49993986 | None:intergenic | 0.0% |
| !! | TTTAAATTAAAATAATAAAA+TGG | + | chr4_4:49993967-49993986 | None:intergenic | 0.0% |
| !! | TATTAATTAAAGTTATAAAG+GGG | + | chr4_4:49994733-49994752 | None:intergenic | 10.0% |
| !! | GTATTAATTAAAGTTATAAA+GGG | + | chr4_4:49994734-49994753 | None:intergenic | 10.0% |
| !! | AGTATTAATTAAAGTTATAA+AGG | + | chr4_4:49994735-49994754 | None:intergenic | 10.0% |
| !! | AGAAAAATGTATAAATAAAA+GGG | + | chr4_4:49994793-49994812 | None:intergenic | 10.0% |
| !! | AAGAAAAATGTATAAATAAA+AGG | + | chr4_4:49994794-49994813 | None:intergenic | 10.0% |
| !! | TATTAATTAAAGTTATAAAG+GGG | + | chr4_4:49994733-49994752 | None:intergenic | 10.0% |
| !! | GTATTAATTAAAGTTATAAA+GGG | + | chr4_4:49994734-49994753 | None:intergenic | 10.0% |
| !! | AGTATTAATTAAAGTTATAA+AGG | + | chr4_4:49994735-49994754 | None:intergenic | 10.0% |
| !! | AGAAAAATGTATAAATAAAA+GGG | + | chr4_4:49994793-49994812 | None:intergenic | 10.0% |
| !! | AAGAAAAATGTATAAATAAA+AGG | + | chr4_4:49994794-49994813 | None:intergenic | 10.0% |
| !!! | AAATTTTCATGTTTTTGTTA+AGG | - | chr4_4:49994159-49994178 | Msa0685740:intron | 15.0% |
| !!! | AAATTTTCATGTTTTTGTTA+AGG | - | chr4_4:49994159-49994178 | Msa0685740:intron | 15.0% |
| !! | AGCATACTAAATTCTTTATA+GGG | + | chr4_4:49993859-49993878 | None:intergenic | 20.0% |
| !!! | TGGAAAAAATTTTAAAGCTA+AGG | + | chr4_4:49993947-49993966 | None:intergenic | 20.0% |
| !!! | TTTTGTAAGCCAAAATTTTA+AGG | + | chr4_4:49994080-49994099 | None:intergenic | 20.0% |
| !! | GGTATTAGGTTATTATTATT+AGG | + | chr4_4:49994531-49994550 | None:intergenic | 20.0% |
| !! | ATAATAATAACCTAATACCA+CGG | - | chr4_4:49994532-49994551 | Msa0685740:intron | 20.0% |
| !!! | CATTTTTTTAGTAAATGACT+CGG | + | chr4_4:49994635-49994654 | None:intergenic | 20.0% |
| !!! | TAAAATGACTCAGTTATTTT+GGG | + | chr4_4:49994661-49994680 | None:intergenic | 20.0% |
| !!! | TTAAAATGACTCAGTTATTT+TGG | + | chr4_4:49994662-49994681 | None:intergenic | 20.0% |
| !! | AAAAGTGGAATATATTGAAT+TGG | + | chr4_4:49994709-49994728 | None:intergenic | 20.0% |
| !! | ATGAGATATATATAAGGATA+AGG | + | chr4_4:49994957-49994976 | None:intergenic | 20.0% |
| !! | TATTAGTAAGCTCAAAATTT+AGG | + | chr4_4:49995038-49995057 | None:intergenic | 20.0% |
| !! | AGCATACTAAATTCTTTATA+GGG | + | chr4_4:49993859-49993878 | None:intergenic | 20.0% |
| !!! | TGGAAAAAATTTTAAAGCTA+AGG | + | chr4_4:49993947-49993966 | None:intergenic | 20.0% |
| !!! | TTTTGTAAGCCAAAATTTTA+AGG | + | chr4_4:49994080-49994099 | None:intergenic | 20.0% |
| !! | GGTATTAGGTTATTATTATT+AGG | + | chr4_4:49994531-49994550 | None:intergenic | 20.0% |
| !! | ATAATAATAACCTAATACCA+CGG | - | chr4_4:49994532-49994551 | Msa0685740:intron | 20.0% |
| !!! | CATTTTTTTAGTAAATGACT+CGG | + | chr4_4:49994635-49994654 | None:intergenic | 20.0% |
| !!! | TAAAATGACTCAGTTATTTT+GGG | + | chr4_4:49994661-49994680 | None:intergenic | 20.0% |
| !!! | TTAAAATGACTCAGTTATTT+TGG | + | chr4_4:49994662-49994681 | None:intergenic | 20.0% |
| !! | AAAAGTGGAATATATTGAAT+TGG | + | chr4_4:49994709-49994728 | None:intergenic | 20.0% |
| !! | ATGAGATATATATAAGGATA+AGG | + | chr4_4:49994957-49994976 | None:intergenic | 20.0% |
| !! | TATTAGTAAGCTCAAAATTT+AGG | + | chr4_4:49995038-49995057 | None:intergenic | 20.0% |
| ! | GAGCATACTAAATTCTTTAT+AGG | + | chr4_4:49993860-49993879 | None:intergenic | 25.0% |
| !! | ATCATGCATCCTTAAAATTT+TGG | - | chr4_4:49994068-49994087 | Msa0685740:intron | 25.0% |
| ! | AACATCCTATAGATAAGTAT+AGG | - | chr4_4:49994185-49994204 | Msa0685740:intron | 25.0% |
| !! | AATACAACTCAACTTTTATG+TGG | - | chr4_4:49994417-49994436 | Msa0685740:intron | 25.0% |
| !! | ATACAACTCAACTTTTATGT+GGG | - | chr4_4:49994418-49994437 | Msa0685740:intron | 25.0% |
| ! | ATAAGGATAAGGAATTAAGT+CGG | + | chr4_4:49994946-49994965 | None:intergenic | 25.0% |
| !!! | GAGTTGATGAGATATATATA+AGG | + | chr4_4:49994963-49994982 | None:intergenic | 25.0% |
| !!! | AAAAGGAAAAGTGTCAAATT+CGG | - | chr4_4:49995157-49995176 | Msa0685740:intron | 25.0% |
| ! | GAGCATACTAAATTCTTTAT+AGG | + | chr4_4:49993860-49993879 | None:intergenic | 25.0% |
| !! | ATCATGCATCCTTAAAATTT+TGG | - | chr4_4:49994068-49994087 | Msa0685740:intron | 25.0% |
| ! | AACATCCTATAGATAAGTAT+AGG | - | chr4_4:49994185-49994204 | Msa0685740:intron | 25.0% |
| !! | AATACAACTCAACTTTTATG+TGG | - | chr4_4:49994417-49994436 | Msa0685740:intron | 25.0% |
| !! | ATACAACTCAACTTTTATGT+GGG | - | chr4_4:49994418-49994437 | Msa0685740:intron | 25.0% |
| ! | ATAAGGATAAGGAATTAAGT+CGG | + | chr4_4:49994946-49994965 | None:intergenic | 25.0% |
| !!! | GAGTTGATGAGATATATATA+AGG | + | chr4_4:49994963-49994982 | None:intergenic | 25.0% |
| !!! | AAAAGGAAAAGTGTCAAATT+CGG | - | chr4_4:49995157-49995176 | Msa0685740:intron | 25.0% |
| TGATATGAACCTAAGATCTT+GGG | + | chr4_4:49993830-49993849 | None:intergenic | 30.0% | |
| ATGATATGAACCTAAGATCT+TGG | + | chr4_4:49993831-49993850 | None:intergenic | 30.0% | |
| AATCCATATGATTCTCATTG+AGG | + | chr4_4:49993884-49993903 | None:intergenic | 30.0% | |
| ! | CATTGATGATATCATAGCAT+AGG | + | chr4_4:49993913-49993932 | None:intergenic | 30.0% |
| CTTCCTATCTACTTAATTCT+AGG | - | chr4_4:49994114-49994133 | Msa0685740:intron | 30.0% | |
| AGTCCTAGAATTAAGTAGAT+AGG | + | chr4_4:49994120-49994139 | None:intergenic | 30.0% | |
| AACAGCCTATACTTATCTAT+AGG | + | chr4_4:49994193-49994212 | None:intergenic | 30.0% | |
| !! | TAAAACAGTGGCTATTTCTA+CGG | - | chr4_4:49994388-49994407 | Msa0685740:intron | 30.0% |
| TATTAGACTAGATAGTACCA+CGG | - | chr4_4:49994463-49994482 | Msa0685740:intron | 30.0% | |
| AAGTTATAAAGGGGAAAAAG+TGG | + | chr4_4:49994724-49994743 | None:intergenic | 30.0% | |
| AGCCAATGACTCAATTAATT+TGG | - | chr4_4:49994829-49994848 | Msa0685740:intron | 30.0% | |
| GCCAATGACTCAATTAATTT+GGG | - | chr4_4:49994830-49994849 | Msa0685740:intron | 30.0% | |
| TCCCAAATTAATTGAGTCAT+TGG | + | chr4_4:49994834-49994853 | None:intergenic | 30.0% | |
| ! | ATGACTCAATTAATTTGGGA+TGG | - | chr4_4:49994834-49994853 | Msa0685740:intron | 30.0% |
| !! | TGTTTGCTTTGGATTTTGTT+TGG | + | chr4_4:49994985-49995004 | None:intergenic | 30.0% |
| AAACACTAGTATTTGTAGAG+TGG | + | chr4_4:49995009-49995028 | None:intergenic | 30.0% | |
| AGTAAGCTCAAAATTTAGGA+AGG | + | chr4_4:49995034-49995053 | None:intergenic | 30.0% | |
| !! | ACCAAAAGCACTAAAATGAT+CGG | + | chr4_4:49995070-49995089 | None:intergenic | 30.0% |
| !!! | TTGAAGTCTTGTTCTTTTCT+TGG | + | chr4_4:49995230-49995249 | None:intergenic | 30.0% |
| GTTAAAACATTCAACAAGCA+TGG | + | chr4_4:49995301-49995320 | None:intergenic | 30.0% | |
| TGATATGAACCTAAGATCTT+GGG | + | chr4_4:49993830-49993849 | None:intergenic | 30.0% | |
| ATGATATGAACCTAAGATCT+TGG | + | chr4_4:49993831-49993850 | None:intergenic | 30.0% | |
| AATCCATATGATTCTCATTG+AGG | + | chr4_4:49993884-49993903 | None:intergenic | 30.0% | |
| ! | CATTGATGATATCATAGCAT+AGG | + | chr4_4:49993913-49993932 | None:intergenic | 30.0% |
| CTTCCTATCTACTTAATTCT+AGG | - | chr4_4:49994114-49994133 | Msa0685740:intron | 30.0% | |
| AGTCCTAGAATTAAGTAGAT+AGG | + | chr4_4:49994120-49994139 | None:intergenic | 30.0% | |
| AACAGCCTATACTTATCTAT+AGG | + | chr4_4:49994193-49994212 | None:intergenic | 30.0% | |
| !! | TAAAACAGTGGCTATTTCTA+CGG | - | chr4_4:49994388-49994407 | Msa0685740:intron | 30.0% |
| TATTAGACTAGATAGTACCA+CGG | - | chr4_4:49994463-49994482 | Msa0685740:intron | 30.0% | |
| AAGTTATAAAGGGGAAAAAG+TGG | + | chr4_4:49994724-49994743 | None:intergenic | 30.0% | |
| AGCCAATGACTCAATTAATT+TGG | - | chr4_4:49994829-49994848 | Msa0685740:intron | 30.0% | |
| GCCAATGACTCAATTAATTT+GGG | - | chr4_4:49994830-49994849 | Msa0685740:intron | 30.0% | |
| TCCCAAATTAATTGAGTCAT+TGG | + | chr4_4:49994834-49994853 | None:intergenic | 30.0% | |
| ! | ATGACTCAATTAATTTGGGA+TGG | - | chr4_4:49994834-49994853 | Msa0685740:intron | 30.0% |
| !! | TGTTTGCTTTGGATTTTGTT+TGG | + | chr4_4:49994985-49995004 | None:intergenic | 30.0% |
| AAACACTAGTATTTGTAGAG+TGG | + | chr4_4:49995009-49995028 | None:intergenic | 30.0% | |
| AGTAAGCTCAAAATTTAGGA+AGG | + | chr4_4:49995034-49995053 | None:intergenic | 30.0% | |
| !! | ACCAAAAGCACTAAAATGAT+CGG | + | chr4_4:49995070-49995089 | None:intergenic | 30.0% |
| !!! | TTGAAGTCTTGTTCTTTTCT+TGG | + | chr4_4:49995230-49995249 | None:intergenic | 30.0% |
| GTTAAAACATTCAACAAGCA+TGG | + | chr4_4:49995301-49995320 | None:intergenic | 30.0% | |
| AAGATCTTGGGTTCTCAATT+GGG | + | chr4_4:49993818-49993837 | None:intergenic | 35.0% | |
| TAAGATCTTGGGTTCTCAAT+TGG | + | chr4_4:49993819-49993838 | None:intergenic | 35.0% | |
| AATTGAGAACCCAAGATCTT+AGG | - | chr4_4:49993818-49993837 | Msa0685740:CDS | 35.0% | |
| TCTCCTCAATGAGAATCATA+TGG | - | chr4_4:49993878-49993897 | Msa0685740:intron | 35.0% | |
| AATATATGAGACATGGTACG+AGG | - | chr4_4:49994284-49994303 | Msa0685740:intron | 35.0% | |
| TGTACTGAGGTTTGCATTAA+CGG | + | chr4_4:49994325-49994344 | None:intergenic | 35.0% | |
| ! | AACCTTTGCAAAGTATCTGT+TGG | + | chr4_4:49994369-49994388 | None:intergenic | 35.0% |
| CTTTGCAAAGGTTAAAACAG+TGG | - | chr4_4:49994376-49994395 | Msa0685740:intron | 35.0% | |
| !! | AGTAAATGACTCGGTTAATC+CGG | + | chr4_4:49994626-49994645 | None:intergenic | 35.0% |
| ! | ACTCAATTAATTTGGGATGG+AGG | - | chr4_4:49994837-49994856 | Msa0685740:intron | 35.0% |
| ! | CTCAATTAATTTGGGATGGA+GGG | - | chr4_4:49994838-49994857 | Msa0685740:intron | 35.0% |
| AGCTCAAGCATGAAGTTATT+GGG | - | chr4_4:49994899-49994918 | Msa0685740:intron | 35.0% | |
| ! | AAAGCACTAAAATGATCGGT+AGG | + | chr4_4:49995066-49995085 | None:intergenic | 35.0% |
| !! | ACCGATCATTTTAGTGCTTT+TGG | - | chr4_4:49995066-49995085 | Msa0685740:intron | 35.0% |
| ! | CTTTTCTCTTTCTCTCAGTT+TGG | + | chr4_4:49995142-49995161 | None:intergenic | 35.0% |
| CAAACTGAGAGAAAGAGAAA+AGG | - | chr4_4:49995140-49995159 | Msa0685740:intron | 35.0% | |
| AAGATCTTGGGTTCTCAATT+GGG | + | chr4_4:49993818-49993837 | None:intergenic | 35.0% | |
| TAAGATCTTGGGTTCTCAAT+TGG | + | chr4_4:49993819-49993838 | None:intergenic | 35.0% | |
| AATTGAGAACCCAAGATCTT+AGG | - | chr4_4:49993818-49993837 | Msa0685740:CDS | 35.0% | |
| TCTCCTCAATGAGAATCATA+TGG | - | chr4_4:49993878-49993897 | Msa0685740:intron | 35.0% | |
| AATATATGAGACATGGTACG+AGG | - | chr4_4:49994284-49994303 | Msa0685740:intron | 35.0% | |
| TGTACTGAGGTTTGCATTAA+CGG | + | chr4_4:49994325-49994344 | None:intergenic | 35.0% | |
| ! | AACCTTTGCAAAGTATCTGT+TGG | + | chr4_4:49994369-49994388 | None:intergenic | 35.0% |
| CTTTGCAAAGGTTAAAACAG+TGG | - | chr4_4:49994376-49994395 | Msa0685740:intron | 35.0% | |
| !! | AGTAAATGACTCGGTTAATC+CGG | + | chr4_4:49994626-49994645 | None:intergenic | 35.0% |
| ! | ACTCAATTAATTTGGGATGG+AGG | - | chr4_4:49994837-49994856 | Msa0685740:intron | 35.0% |
| ! | CTCAATTAATTTGGGATGGA+GGG | - | chr4_4:49994838-49994857 | Msa0685740:intron | 35.0% |
| AGCTCAAGCATGAAGTTATT+GGG | - | chr4_4:49994899-49994918 | Msa0685740:intron | 35.0% | |
| ! | AAAGCACTAAAATGATCGGT+AGG | + | chr4_4:49995066-49995085 | None:intergenic | 35.0% |
| !! | ACCGATCATTTTAGTGCTTT+TGG | - | chr4_4:49995066-49995085 | Msa0685740:intron | 35.0% |
| ! | CTTTTCTCTTTCTCTCAGTT+TGG | + | chr4_4:49995142-49995161 | None:intergenic | 35.0% |
| CAAACTGAGAGAAAGAGAAA+AGG | - | chr4_4:49995140-49995159 | Msa0685740:intron | 35.0% | |
| TATTCAATCCTGCCCAAGAT+TGG | - | chr4_4:49993672-49993691 | Msa0685740:CDS | 40.0% | |
| ATTCAATCCTGCCCAAGATT+GGG | - | chr4_4:49993673-49993692 | Msa0685740:CDS | 40.0% | |
| TCAATCACCAACCCAATCTT+GGG | + | chr4_4:49993687-49993706 | None:intergenic | 40.0% | |
| ATCAATCACCAACCCAATCT+TGG | + | chr4_4:49993688-49993707 | None:intergenic | 40.0% | |
| !! | GTTGCACAAGAGCACTAAAA+TGG | + | chr4_4:49993753-49993772 | None:intergenic | 40.0% |
| TGCAACTCTTCCTCTATAGA+AGG | - | chr4_4:49993767-49993786 | Msa0685740:CDS | 40.0% | |
| ACTCTTCCTCTATAGAAGGA+AGG | - | chr4_4:49993771-49993790 | Msa0685740:CDS | 40.0% | |
| TGCTGCAGGAGTTATATACA+AGG | + | chr4_4:49994228-49994247 | None:intergenic | 40.0% | |
| ACGTGGCAATATATGAGACA+TGG | - | chr4_4:49994277-49994296 | Msa0685740:intron | 40.0% | |
| ! | GATTCGGTTACAATGTACTG+AGG | + | chr4_4:49994338-49994357 | None:intergenic | 40.0% |
| !! | TCTGTTGGCTCAATCAGATT+CGG | + | chr4_4:49994354-49994373 | None:intergenic | 40.0% |
| AGCCAACAGATACTTTGCAA+AGG | - | chr4_4:49994364-49994383 | Msa0685740:intron | 40.0% | |
| ! | CAACTCAACTTTTATGTGGG+TGG | - | chr4_4:49994421-49994440 | Msa0685740:intron | 40.0% |
| ACTAGCAAATAGCAATACCG+TGG | + | chr4_4:49994483-49994502 | None:intergenic | 40.0% | |
| ! | CTACAGAAGCTTTTGTGCTA+AGG | + | chr4_4:49994590-49994609 | None:intergenic | 40.0% |
| TCATGCTTGAGCTGAAATAC+TGG | + | chr4_4:49994892-49994911 | None:intergenic | 40.0% | |
| CAGCTCAAGCATGAAGTTAT+TGG | - | chr4_4:49994898-49994917 | Msa0685740:intron | 40.0% | |
| TGTAGAGTGGATGTTTGCTT+TGG | + | chr4_4:49994996-49995015 | None:intergenic | 40.0% | |
| ! | GGTCTTTTTGTAGTGATGTC+TGG | - | chr4_4:49995087-49995106 | Msa0685740:intron | 40.0% |
| TGTCTGGACTTGTGGATATA+TGG | - | chr4_4:49995103-49995122 | Msa0685740:intron | 40.0% | |
| ! | CCTTGGCTTGAAAATTTGCA+CGG | + | chr4_4:49995253-49995272 | None:intergenic | 40.0% |
| !!! | CAAGCCAAGGTTGCTATTTT+CGG | - | chr4_4:49995263-49995282 | Msa0685740:intron | 40.0% |
| TATTCAATCCTGCCCAAGAT+TGG | - | chr4_4:49993672-49993691 | Msa0685740:CDS | 40.0% | |
| ATTCAATCCTGCCCAAGATT+GGG | - | chr4_4:49993673-49993692 | Msa0685740:CDS | 40.0% | |
| TCAATCACCAACCCAATCTT+GGG | + | chr4_4:49993687-49993706 | None:intergenic | 40.0% | |
| ATCAATCACCAACCCAATCT+TGG | + | chr4_4:49993688-49993707 | None:intergenic | 40.0% | |
| !! | GTTGCACAAGAGCACTAAAA+TGG | + | chr4_4:49993753-49993772 | None:intergenic | 40.0% |
| TGCAACTCTTCCTCTATAGA+AGG | - | chr4_4:49993767-49993786 | Msa0685740:CDS | 40.0% | |
| ACTCTTCCTCTATAGAAGGA+AGG | - | chr4_4:49993771-49993790 | Msa0685740:CDS | 40.0% | |
| TGCTGCAGGAGTTATATACA+AGG | + | chr4_4:49994228-49994247 | None:intergenic | 40.0% | |
| ACGTGGCAATATATGAGACA+TGG | - | chr4_4:49994277-49994296 | Msa0685740:intron | 40.0% | |
| ! | GATTCGGTTACAATGTACTG+AGG | + | chr4_4:49994338-49994357 | None:intergenic | 40.0% |
| !! | TCTGTTGGCTCAATCAGATT+CGG | + | chr4_4:49994354-49994373 | None:intergenic | 40.0% |
| AGCCAACAGATACTTTGCAA+AGG | - | chr4_4:49994364-49994383 | Msa0685740:intron | 40.0% | |
| ! | CAACTCAACTTTTATGTGGG+TGG | - | chr4_4:49994421-49994440 | Msa0685740:intron | 40.0% |
| ACTAGCAAATAGCAATACCG+TGG | + | chr4_4:49994483-49994502 | None:intergenic | 40.0% | |
| ! | CTACAGAAGCTTTTGTGCTA+AGG | + | chr4_4:49994590-49994609 | None:intergenic | 40.0% |
| TCATGCTTGAGCTGAAATAC+TGG | + | chr4_4:49994892-49994911 | None:intergenic | 40.0% | |
| CAGCTCAAGCATGAAGTTAT+TGG | - | chr4_4:49994898-49994917 | Msa0685740:intron | 40.0% | |
| TGTAGAGTGGATGTTTGCTT+TGG | + | chr4_4:49994996-49995015 | None:intergenic | 40.0% | |
| ! | GGTCTTTTTGTAGTGATGTC+TGG | - | chr4_4:49995087-49995106 | Msa0685740:intron | 40.0% |
| TGTCTGGACTTGTGGATATA+TGG | - | chr4_4:49995103-49995122 | Msa0685740:intron | 40.0% | |
| ! | CCTTGGCTTGAAAATTTGCA+CGG | + | chr4_4:49995253-49995272 | None:intergenic | 40.0% |
| !!! | CAAGCCAAGGTTGCTATTTT+CGG | - | chr4_4:49995263-49995282 | Msa0685740:intron | 40.0% |
| CAAGCTCCTTCCTTCTATAG+AGG | + | chr4_4:49993780-49993799 | None:intergenic | 45.0% | |
| ATGGTACGAGGATCTTCAGT+CGG | - | chr4_4:49994296-49994315 | Msa0685740:intron | 45.0% | |
| ACTGAGGTTTGCATTAACGG+CGG | + | chr4_4:49994322-49994341 | None:intergenic | 45.0% | |
| TAATACCACGGTATCGCTAG+CGG | - | chr4_4:49994544-49994563 | Msa0685740:intron | 45.0% | |
| !! | ATGACTCGGTTAATCCGGAA+CGG | + | chr4_4:49994621-49994640 | None:intergenic | 45.0% |
| TGTAGTGATGTCTGGACTTG+TGG | - | chr4_4:49995095-49995114 | Msa0685740:intron | 45.0% | |
| ATGTTGAGTGGAGTTGCTAG+AGG | + | chr4_4:49995199-49995218 | None:intergenic | 45.0% | |
| !! | TTGGCTAGCTTCATGTTGAG+TGG | + | chr4_4:49995211-49995230 | None:intergenic | 45.0% |
| !! | CCGTGCAAATTTTCAAGCCA+AGG | - | chr4_4:49995250-49995269 | Msa0685740:intron | 45.0% |
| CAAGCTCCTTCCTTCTATAG+AGG | + | chr4_4:49993780-49993799 | None:intergenic | 45.0% | |
| ATGGTACGAGGATCTTCAGT+CGG | - | chr4_4:49994296-49994315 | Msa0685740:intron | 45.0% | |
| ACTGAGGTTTGCATTAACGG+CGG | + | chr4_4:49994322-49994341 | None:intergenic | 45.0% | |
| TAATACCACGGTATCGCTAG+CGG | - | chr4_4:49994544-49994563 | Msa0685740:intron | 45.0% | |
| !! | ATGACTCGGTTAATCCGGAA+CGG | + | chr4_4:49994621-49994640 | None:intergenic | 45.0% |
| TGTAGTGATGTCTGGACTTG+TGG | - | chr4_4:49995095-49995114 | Msa0685740:intron | 45.0% | |
| ATGTTGAGTGGAGTTGCTAG+AGG | + | chr4_4:49995199-49995218 | None:intergenic | 45.0% | |
| !! | TTGGCTAGCTTCATGTTGAG+TGG | + | chr4_4:49995211-49995230 | None:intergenic | 45.0% |
| !! | CCGTGCAAATTTTCAAGCCA+AGG | - | chr4_4:49995250-49995269 | Msa0685740:intron | 45.0% |
| AATCCTGCCCAAGATTGGGT+TGG | - | chr4_4:49993677-49993696 | Msa0685740:CDS | 50.0% | |
| GCTAGCGATACCGTGGTATT+AGG | + | chr4_4:49994545-49994564 | None:intergenic | 50.0% | |
| TAAAACCGCTAGCGATACCG+TGG | + | chr4_4:49994552-49994571 | None:intergenic | 50.0% | |
| CTGTAGTACTTCCTCCGTTC+CGG | - | chr4_4:49994604-49994623 | Msa0685740:intron | 50.0% | |
| !!! | GCCAAGGTTGCTATTTTCGG+AGG | - | chr4_4:49995266-49995285 | Msa0685740:intron | 50.0% |
| GCCTCCGAAAATAGCAACCT+TGG | + | chr4_4:49995270-49995289 | None:intergenic | 50.0% | |
| AATCCTGCCCAAGATTGGGT+TGG | - | chr4_4:49993677-49993696 | Msa0685740:CDS | 50.0% | |
| GCTAGCGATACCGTGGTATT+AGG | + | chr4_4:49994545-49994564 | None:intergenic | 50.0% | |
| TAAAACCGCTAGCGATACCG+TGG | + | chr4_4:49994552-49994571 | None:intergenic | 50.0% | |
| CTGTAGTACTTCCTCCGTTC+CGG | - | chr4_4:49994604-49994623 | Msa0685740:intron | 50.0% | |
| !!! | GCCAAGGTTGCTATTTTCGG+AGG | - | chr4_4:49995266-49995285 | Msa0685740:intron | 50.0% |
| GCCTCCGAAAATAGCAACCT+TGG | + | chr4_4:49995270-49995289 | None:intergenic | 50.0% | |
| TCACCAACCCAATCTTGGGC+AGG | + | chr4_4:49993683-49993702 | None:intergenic | 55.0% | |
| ! | CAGCAGATGTGCCACTAGGA+GGG | - | chr4_4:49994243-49994262 | Msa0685740:intron | 55.0% |
| ! | AGATGTGCCACTAGGAGGGA+TGG | - | chr4_4:49994247-49994266 | Msa0685740:intron | 55.0% |
| ACTCGGTTAATCCGGAACGG+AGG | + | chr4_4:49994618-49994637 | None:intergenic | 55.0% | |
| TCACCAACCCAATCTTGGGC+AGG | + | chr4_4:49993683-49993702 | None:intergenic | 55.0% | |
| ! | CAGCAGATGTGCCACTAGGA+GGG | - | chr4_4:49994243-49994262 | Msa0685740:intron | 55.0% |
| ! | AGATGTGCCACTAGGAGGGA+TGG | - | chr4_4:49994247-49994266 | Msa0685740:intron | 55.0% |
| ACTCGGTTAATCCGGAACGG+AGG | + | chr4_4:49994618-49994637 | None:intergenic | 55.0% | |
| CCTAGTGGCACATCTGCTGC+AGG | + | chr4_4:49994242-49994261 | None:intergenic | 60.0% | |
| ! | CCTGCAGCAGATGTGCCACT+AGG | - | chr4_4:49994239-49994258 | Msa0685740:intron | 60.0% |
| ! | GCAGCAGATGTGCCACTAGG+AGG | - | chr4_4:49994242-49994261 | Msa0685740:intron | 60.0% |
| ! | TGTGCCACTAGGAGGGATGG+AGG | - | chr4_4:49994250-49994269 | Msa0685740:intron | 60.0% |
| ! | GTGCCACTAGGAGGGATGGA+GGG | - | chr4_4:49994251-49994270 | Msa0685740:intron | 60.0% |
| CCTAGTGGCACATCTGCTGC+AGG | + | chr4_4:49994242-49994261 | None:intergenic | 60.0% | |
| ! | CCTGCAGCAGATGTGCCACT+AGG | - | chr4_4:49994239-49994258 | Msa0685740:intron | 60.0% |
| ! | GCAGCAGATGTGCCACTAGG+AGG | - | chr4_4:49994242-49994261 | Msa0685740:intron | 60.0% |
| ! | TGTGCCACTAGGAGGGATGG+AGG | - | chr4_4:49994250-49994269 | Msa0685740:intron | 60.0% |
| ! | GTGCCACTAGGAGGGATGGA+GGG | - | chr4_4:49994251-49994270 | Msa0685740:intron | 60.0% |
| GCTCCCTCCATCCCTCCTAG+TGG | + | chr4_4:49994257-49994276 | None:intergenic | 65.0% | |
| GCTCCCTCCATCCCTCCTAG+TGG | + | chr4_4:49994257-49994276 | None:intergenic | 65.0% | |
| ! | GGAGGGATGGAGGGAGCACG+TGG | - | chr4_4:49994260-49994279 | Msa0685740:intron | 70.0% |
| ! | GGAGGGATGGAGGGAGCACG+TGG | - | chr4_4:49994260-49994279 | Msa0685740:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 49993665 | 49995326 | 49993665 | ID=Msa0685740;Name=Msa0685740 |
| chr4_4 | mRNA | 49993665 | 49995326 | 49993665 | ID=Msa0685740-mRNA-1;Parent=Msa0685740;Name=Msa0685740-mRNA-1;_AED=0.99;_eAED=1.00;_QI=0|0|0|0.33|1|1|3|0|79 |
| chr4_4 | exon | 49995321 | 49995326 | 49995321 | ID=Msa0685740-mRNA-1:exon:12728;Parent=Msa0685740-mRNA-1 |
| chr4_4 | exon | 49994507 | 49994513 | 49994507 | ID=Msa0685740-mRNA-1:exon:12727;Parent=Msa0685740-mRNA-1 |
| chr4_4 | exon | 49993665 | 49993891 | 49993665 | ID=Msa0685740-mRNA-1:exon:12726;Parent=Msa0685740-mRNA-1 |
| chr4_4 | CDS | 49995321 | 49995326 | 49995321 | ID=Msa0685740-mRNA-1:cds;Parent=Msa0685740-mRNA-1 |
| chr4_4 | CDS | 49994507 | 49994513 | 49994507 | ID=Msa0685740-mRNA-1:cds;Parent=Msa0685740-mRNA-1 |
| chr4_4 | CDS | 49993665 | 49993891 | 49993665 | ID=Msa0685740-mRNA-1:cds;Parent=Msa0685740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
