Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0504430 | XP_013460223.2 | 97.647 | 255 | 6 | 0 | 1 | 255 | 1 | 255 | 0.0 | 515 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0504430 | sp|Q9M022|AIRP2_ARATH | 62.963 | 243 | 89 | 1 | 13 | 255 | 1 | 242 | 3.40e-107 | 312 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0504430 | A0A396ISD6 | 97.647 | 255 | 6 | 0 | 1 | 255 | 1 | 255 | 0.0 | 515 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0192290 | Msa0504430 | 0.840550 | 8.125510e-58 | -8.615850e-47 |
| Msa0192890 | Msa0504430 | 0.813735 | 2.201798e-51 | -8.615850e-47 |
| Msa0225420 | Msa0504430 | 0.804465 | 2.132747e-49 | -8.615850e-47 |
| Msa0375270 | Msa0504430 | -0.804617 | 1.982532e-49 | -8.615850e-47 |
| Msa0412820 | Msa0504430 | 0.927541 | 1.017600e-91 | -8.615850e-47 |
| Msa0415910 | Msa0504430 | -0.810600 | 1.063204e-50 | -8.615850e-47 |
| Msa0457530 | Msa0504430 | 0.904252 | 1.490100e-79 | -8.615850e-47 |
| Msa0482360 | Msa0504430 | 0.810281 | 1.246479e-50 | -8.615850e-47 |
| Msa0313050 | Msa0504430 | 0.839673 | 1.376926e-57 | -8.615850e-47 |
| Msa0504430 | Msa0508000 | -0.806071 | 9.826731e-50 | -8.615850e-47 |
| Msa0504430 | Msa0685740 | 0.810073 | 1.381554e-50 | -8.615850e-47 |
| Msa0504430 | Msa0783680 | 0.848646 | 5.366708e-60 | -8.615850e-47 |
| Msa0504430 | Msa0859120 | 0.824234 | 9.013466e-54 | -8.615850e-47 |
| Msa0504430 | Msa1258600 | 0.822341 | 2.494727e-53 | -8.615850e-47 |
| Msa0504430 | Msa1335090 | 0.874017 | 9.376500e-68 | -8.615850e-47 |
| Msa0504430 | Msa1382640 | 0.804132 | 2.501808e-49 | -8.615850e-47 |
| Msa0504430 | Msa1400940 | 0.820645 | 6.149247e-53 | -8.615850e-47 |
| Msa0504430 | Msa1441220 | -0.831767 | 1.385027e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0504430 | MtrunA17_Chr3g0104651 | 97.647 | 255 | 6 | 0 | 1 | 255 | 1 | 255 | 0.0 | 515 |
| Msa0504430 | MtrunA17_Chr4g0047521 | 63.374 | 243 | 88 | 1 | 13 | 255 | 7 | 248 | 3.21e-110 | 317 |
| Msa0504430 | MtrunA17_Chr2g0281861 | 63.866 | 238 | 86 | 0 | 18 | 255 | 14 | 251 | 6.40e-109 | 314 |
| Msa0504430 | MtrunA17_Chr4g0006201 | 60.000 | 235 | 93 | 1 | 9 | 243 | 2 | 235 | 1.37e-103 | 301 |
| Msa0504430 | MtrunA17_Chr7g0242261 | 61.333 | 225 | 86 | 1 | 18 | 241 | 25 | 249 | 3.39e-99 | 290 |
| Msa0504430 | MtrunA17_Chr8g0376861 | 45.417 | 240 | 124 | 3 | 18 | 250 | 10 | 249 | 1.19e-64 | 202 |
| Msa0504430 | MtrunA17_Chr3g0123161 | 44.215 | 242 | 126 | 3 | 18 | 250 | 13 | 254 | 2.44e-60 | 191 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0504430 | AT3G47160.1 | 63.362 | 232 | 85 | 0 | 13 | 244 | 1 | 232 | 6.03e-111 | 320 |
| Msa0504430 | AT5G01520.1 | 62.963 | 243 | 89 | 1 | 13 | 255 | 1 | 242 | 3.46e-108 | 312 |
| Msa0504430 | AT3G47160.2 | 60.246 | 244 | 85 | 1 | 13 | 244 | 1 | 244 | 3.29e-107 | 310 |
| Msa0504430 | AT5G58787.1 | 63.291 | 237 | 84 | 1 | 13 | 249 | 1 | 234 | 3.66e-103 | 300 |
| Msa0504430 | AT3G47160.3 | 63.590 | 195 | 71 | 0 | 50 | 244 | 1 | 195 | 1.55e-92 | 271 |
| Msa0504430 | AT5G58787.2 | 59.494 | 237 | 78 | 2 | 13 | 249 | 1 | 219 | 2.13e-91 | 269 |
| Msa0504430 | AT5G58787.3 | 57.604 | 217 | 74 | 2 | 33 | 249 | 2 | 200 | 2.05e-79 | 238 |
| Msa0504430 | AT5G01520.2 | 63.473 | 167 | 61 | 0 | 18 | 184 | 5 | 171 | 2.00e-74 | 224 |
| Msa0504430 | AT1G24440.1 | 43.600 | 250 | 137 | 3 | 9 | 254 | 1 | 250 | 6.99e-66 | 205 |
| Msa0504430 | AT1G13195.1 | 43.096 | 239 | 129 | 3 | 18 | 250 | 16 | 253 | 1.03e-62 | 197 |
| Msa0504430 | AT1G24440.2 | 43.519 | 216 | 118 | 3 | 43 | 254 | 3 | 218 | 6.23e-55 | 176 |
| Msa0504430 | AT1G13195.2 | 42.105 | 209 | 114 | 3 | 48 | 250 | 8 | 215 | 7.84e-53 | 171 |
Find 47 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTTAAATTATTGTCCAAAA+TGG | 0.208869 | 3_4:-48901087 | None:intergenic |
| CAGAATCTTACAATTCTCTT+TGG | 0.221212 | 3_4:-48900953 | None:intergenic |
| TTGTACTTGTAAATCCATTT+TGG | 0.225211 | 3_4:+48901073 | Msa0504430:three_prime_UTR |
| AAATTTCAGTGAAAATCTTT+TGG | 0.239866 | 3_4:+48898293 | Msa0504430:CDS |
| TCAGAAAGGTGTCACAGATT+TGG | 0.314514 | 3_4:+48899999 | Msa0504430:CDS |
| CACATTTGGTGGCAACAATT+AGG | 0.316903 | 3_4:-48900162 | None:intergenic |
| CACCAGAGTTTACTCTCTTC+AGG | 0.343822 | 3_4:-48900879 | None:intergenic |
| TCAACATTTATGCAGACATA+TGG | 0.362672 | 3_4:+48899742 | Msa0504430:intron |
| TGGACTGATTACCGACTTGC+TGG | 0.372757 | 3_4:+48899280 | Msa0504430:CDS |
| TACCGACTTGCTGGTGCTCT+TGG | 0.377091 | 3_4:+48899289 | Msa0504430:CDS |
| TTTATGCAGACATATGGAAA+TGG | 0.389922 | 3_4:+48899748 | Msa0504430:intron |
| TGTAACACTTGAAACACATT+TGG | 0.405912 | 3_4:-48900176 | None:intergenic |
| TCAGGGCATTAGGCCATCCT+AGG | 0.423010 | 3_4:+48899182 | Msa0504430:intron |
| GAGTAAACTCTGGTGACCTT+TGG | 0.424393 | 3_4:+48900887 | Msa0504430:CDS |
| ACAGGAATGTGGAGTTTGCT+TGG | 0.445145 | 3_4:+48900116 | Msa0504430:CDS |
| CTTCAGGCTATCCCGGCAAA+AGG | 0.462552 | 3_4:-48900863 | None:intergenic |
| AACACTTGAAACACATTTGG+TGG | 0.465530 | 3_4:-48900173 | None:intergenic |
| TTCAGGCTATCCCGGCAAAA+GGG | 0.465840 | 3_4:-48900862 | None:intergenic |
| TAGGACACATGTCTTGGGTC+TGG | 0.466508 | 3_4:-48901009 | None:intergenic |
| CATCCTCCTTCTTTATCCCT+AGG | 0.472773 | 3_4:-48899199 | None:intergenic |
| GGATCATAGGACACATGTCT+TGG | 0.474901 | 3_4:-48901015 | None:intergenic |
| CTTGGGTCTGGAATAATAAG+AGG | 0.478210 | 3_4:-48900997 | None:intergenic |
| CTCCTTCTTTATCCCTAGGA+TGG | 0.478340 | 3_4:-48899195 | None:intergenic |
| GTTTCAAGTGTTACAGAGAA+TGG | 0.480502 | 3_4:+48900184 | Msa0504430:CDS |
| TTACTCTCTTCAGGCTATCC+CGG | 0.484027 | 3_4:-48900870 | None:intergenic |
| TTCTGAAGTTGCAATAGAGC+AGG | 0.493865 | 3_4:-48899982 | None:intergenic |
| AATTGACATTGAAAGAGAAC+AGG | 0.495415 | 3_4:+48900098 | Msa0504430:CDS |
| GATCATAGGACACATGTCTT+GGG | 0.498896 | 3_4:-48901014 | None:intergenic |
| CAAGTGACATTGTTGATGTT+GGG | 0.499712 | 3_4:+48900923 | Msa0504430:CDS |
| TTATGCAGACATATGGAAAT+GGG | 0.508592 | 3_4:+48899749 | Msa0504430:intron |
| GTGTCACAGATTTGGAAGAA+AGG | 0.513362 | 3_4:+48900007 | Msa0504430:CDS |
| AAGGAGGATGCTTTCAAATG+AGG | 0.531201 | 3_4:+48899212 | Msa0504430:CDS |
| ACAAGTGACATTGTTGATGT+TGG | 0.533887 | 3_4:+48900922 | Msa0504430:CDS |
| GCTCAGAATTCTAATCTATG+TGG | 0.548859 | 3_4:+48899315 | Msa0504430:CDS |
| GGATTTACAAGTACAATGAA+AGG | 0.553386 | 3_4:-48901066 | None:intergenic |
| CAGGGCATTAGGCCATCCTA+GGG | 0.562794 | 3_4:+48899183 | Msa0504430:intron |
| CTACTATTTCAATATATGAA+AGG | 0.564225 | 3_4:+48899776 | Msa0504430:CDS |
| GATTTACAAGTACAATGAAA+GGG | 0.577355 | 3_4:-48901065 | None:intergenic |
| GCTCTATTGCAACTTCAGAA+AGG | 0.581652 | 3_4:+48899985 | Msa0504430:CDS |
| TTGTGTCTGTGTAAATCCAA+AGG | 0.597551 | 3_4:-48900903 | None:intergenic |
| ATTGAAAGAGAACAGGAATG+TGG | 0.606235 | 3_4:+48900105 | Msa0504430:CDS |
| GGCCATCCTAGGGATAAAGA+AGG | 0.611630 | 3_4:+48899193 | Msa0504430:CDS |
| TCAGGCTATCCCGGCAAAAG+GGG | 0.616325 | 3_4:-48900861 | None:intergenic |
| CATCCTAGGGATAAAGAAGG+AGG | 0.651855 | 3_4:+48899196 | Msa0504430:CDS |
| AACCAAGAGCACCAGCAAGT+CGG | 0.654588 | 3_4:-48899291 | None:intergenic |
| AGCCTGAAGAGAGTAAACTC+TGG | 0.666391 | 3_4:+48900877 | Msa0504430:CDS |
| GAGGCTATCATATAGTCCAG+TGG | 0.703150 | 3_4:+48899231 | Msa0504430:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAGATTAAATTTTTAATCT+GGG | - | chr3_4:48898490-48898509 | None:intergenic | 10.0% |
| !!! | AAAAGATTAAATTTTTAATC+TGG | - | chr3_4:48898491-48898510 | None:intergenic | 10.0% |
| !!! | ATAAAACTAAGTTTAATTTT+TGG | + | chr3_4:48900290-48900309 | Msa0504430:intron | 10.0% |
| !! | TTGAAAAAAATTAAAATCAA+TGG | - | chr3_4:48900660-48900679 | None:intergenic | 10.0% |
| !!! | TTTTTTTGTGAAGAATTTTT+GGG | + | chr3_4:48898507-48898526 | Msa0504430:intron | 15.0% |
| !!! | ACATTTTAGTGTTTTTTTTT+TGG | + | chr3_4:48899059-48899078 | Msa0504430:intron | 15.0% |
| !!! | CCAATAATTTTTAAAAGTAA+GGG | - | chr3_4:48899521-48899540 | None:intergenic | 15.0% |
| !!! | CCTTACTTTTAAAAATTATT+GGG | + | chr3_4:48899519-48899538 | Msa0504430:intron | 15.0% |
| !!! | ACAATTTTATTGTAAGTTTA+AGG | + | chr3_4:48899813-48899832 | Msa0504430:intron | 15.0% |
| !! | AAAATGTCAAATATAAAACT+TGG | - | chr3_4:48900325-48900344 | None:intergenic | 15.0% |
| !!! | TAATCAACTTTTTTAAAAGT+AGG | + | chr3_4:48900442-48900461 | Msa0504430:intron | 15.0% |
| !!! | AAATTTCAGTGAAAATCTTT+TGG | + | chr3_4:48898293-48898312 | Msa0504430:CDS | 20.0% |
| !!! | AATTTCAGTGAAAATCTTTT+GGG | + | chr3_4:48898294-48898313 | Msa0504430:CDS | 20.0% |
| !!! | TCTTCAAATTCACTTTTTTT+AGG | + | chr3_4:48898400-48898419 | Msa0504430:intron | 20.0% |
| !!! | CTTCAAATTCACTTTTTTTA+GGG | + | chr3_4:48898401-48898420 | Msa0504430:intron | 20.0% |
| !!! | CTTTTTTTGTGAAGAATTTT+TGG | + | chr3_4:48898506-48898525 | Msa0504430:intron | 20.0% |
| !!! | TCATCAACATTGATTAAAAA+AGG | - | chr3_4:48898773-48898792 | None:intergenic | 20.0% |
| !! | AAAGAATTTGTATGATACTT+GGG | + | chr3_4:48898899-48898918 | Msa0504430:intron | 20.0% |
| !! | CTTAAGTATGTATATTGTTT+AGG | - | chr3_4:48899348-48899367 | None:intergenic | 20.0% |
| !!! | ATGCGTAAAAAAATTGTTTT+CGG | + | chr3_4:48899371-48899390 | Msa0504430:intron | 20.0% |
| !!! | CCCTTACTTTTAAAAATTAT+TGG | + | chr3_4:48899518-48899537 | Msa0504430:intron | 20.0% |
| !!! | CCCAATAATTTTTAAAAGTA+AGG | - | chr3_4:48899522-48899541 | None:intergenic | 20.0% |
| !! | CTACTATTTCAATATATGAA+AGG | + | chr3_4:48899776-48899795 | Msa0504430:CDS | 20.0% |
| !! | ATAAGAATGTAATGTTATCT+TGG | + | chr3_4:48899842-48899861 | Msa0504430:intron | 20.0% |
| !! | TAACAATCTTTAAATTCATG+AGG | - | chr3_4:48900606-48900625 | None:intergenic | 20.0% |
| !! | TGAATTTAAAGATTGTTATC+CGG | + | chr3_4:48900608-48900627 | Msa0504430:intron | 20.0% |
| !!! | TTTTATAAAGTAAAAGCAAC+CGG | - | chr3_4:48900630-48900649 | None:intergenic | 20.0% |
| !! | AGAATAAACTAGTAACTAAT+TGG | - | chr3_4:48900777-48900796 | None:intergenic | 20.0% |
| !! | AGTTAAATTATTGTCCAAAA+TGG | - | chr3_4:48901090-48901109 | None:intergenic | 20.0% |
| !! | GATTTTTCTTGAAGTTTAGT+TGG | + | chr3_4:48898826-48898845 | Msa0504430:intron | 25.0% |
| ! | CAAGTATCATACAAATTCTT+TGG | - | chr3_4:48898900-48898919 | None:intergenic | 25.0% |
| ! | CAAAGAATTTGTATGATACT+TGG | + | chr3_4:48898898-48898917 | Msa0504430:intron | 25.0% |
| !!! | AATTTGCATGTTTGTTGTAT+TGG | + | chr3_4:48898967-48898986 | Msa0504430:intron | 25.0% |
| ! | GTGAAAAACATCTCAAAATT+TGG | - | chr3_4:48899156-48899175 | None:intergenic | 25.0% |
| !!! | ATGTTTTTCACTGTTTTTCA+GGG | + | chr3_4:48899165-48899184 | Msa0504430:intron | 25.0% |
| !!! | TTTAAAAGTAAGGGTTTTAG+TGG | - | chr3_4:48899512-48899531 | None:intergenic | 25.0% |
| !!! | ACTTTTAAAAATTATTGGGC+CGG | + | chr3_4:48899523-48899542 | Msa0504430:intron | 25.0% |
| !!! | AATGACTATTTTTTAACGAG+TGG | + | chr3_4:48899638-48899657 | Msa0504430:intron | 25.0% |
| ! | TTATCATCGAGAACATAAAA+TGG | - | chr3_4:48899907-48899926 | None:intergenic | 25.0% |
| ! | ATATAACTGGAAACAATCTA+AGG | - | chr3_4:48900249-48900268 | None:intergenic | 25.0% |
| ! | TATGATCAAGTGTATATAAC+TGG | - | chr3_4:48900262-48900281 | None:intergenic | 25.0% |
| ! | TTGATATCAAAGATGTTATG+TGG | - | chr3_4:48900526-48900545 | None:intergenic | 25.0% |
| ! | ACATCTTTGATATCAATGAA+AGG | + | chr3_4:48900530-48900549 | Msa0504430:intron | 25.0% |
| ! | TTTGACTAAAAATATGAGAC+AGG | - | chr3_4:48900567-48900586 | None:intergenic | 25.0% |
| ! | TTACCTAAAAAATGGATCAT+AGG | - | chr3_4:48901031-48901050 | None:intergenic | 25.0% |
| !!! | ATGATCCATTTTTTAGGTAA+AGG | + | chr3_4:48901031-48901050 | Msa0504430:CDS | 25.0% |
| ! | AACAACCTTTACCTAAAAAA+TGG | - | chr3_4:48901039-48901058 | None:intergenic | 25.0% |
| ! | GATTTACAAGTACAATGAAA+GGG | - | chr3_4:48901068-48901087 | None:intergenic | 25.0% |
| !! | TTGTACTTGTAAATCCATTT+TGG | + | chr3_4:48901073-48901092 | Msa0504430:three_prime_UTR | 25.0% |
| !!! | AGTGAAAATCTTTTGGGATA+TGG | + | chr3_4:48898300-48898319 | Msa0504430:CDS | 30.0% |
| !!! | GTGAAAATCTTTTGGGATAT+GGG | + | chr3_4:48898301-48898320 | Msa0504430:CDS | 30.0% |
| CATAGATTTCAACACAAAAG+TGG | - | chr3_4:48898591-48898610 | None:intergenic | 30.0% | |
| ! | ATGTCTTCGATCAAAAGTAT+CGG | - | chr3_4:48898619-48898638 | None:intergenic | 30.0% |
| TTGAACATAATCACATGTGT+CGG | - | chr3_4:48898656-48898675 | None:intergenic | 30.0% | |
| TCACAAAATTGATCATGCAA+TGG | - | chr3_4:48898808-48898827 | None:intergenic | 30.0% | |
| AATGAAGCTGTTTGATAAAC+TGG | + | chr3_4:48898873-48898892 | Msa0504430:intron | 30.0% | |
| ATGAAGCTGTTTGATAAACT+GGG | + | chr3_4:48898874-48898893 | Msa0504430:intron | 30.0% | |
| TAACTAACTCAAACACATCA+AGG | - | chr3_4:48899128-48899147 | None:intergenic | 30.0% | |
| !! | GATGTTTTTCACTGTTTTTC+AGG | + | chr3_4:48899164-48899183 | Msa0504430:intron | 30.0% |
| ! | TTTTTCTCTCTCTTGTTCAA+TGG | + | chr3_4:48899260-48899279 | Msa0504430:CDS | 30.0% |
| AGTACACAAAACGGAAATTA+TGG | - | chr3_4:48899678-48899697 | None:intergenic | 30.0% | |
| TCAACATTTATGCAGACATA+TGG | + | chr3_4:48899742-48899761 | Msa0504430:intron | 30.0% | |
| TTTATGCAGACATATGGAAA+TGG | + | chr3_4:48899748-48899767 | Msa0504430:intron | 30.0% | |
| TTATGCAGACATATGGAAAT+GGG | + | chr3_4:48899749-48899768 | Msa0504430:intron | 30.0% | |
| AATTGACATTGAAAGAGAAC+AGG | + | chr3_4:48900098-48900117 | Msa0504430:CDS | 30.0% | |
| TGTAACACTTGAAACACATT+TGG | - | chr3_4:48900179-48900198 | None:intergenic | 30.0% | |
| ! | TGACATTTTGTCAATCCTTT+TGG | + | chr3_4:48900336-48900355 | Msa0504430:intron | 30.0% |
| GCAGAATGTTAAAAGCAAAA+TGG | - | chr3_4:48900384-48900403 | None:intergenic | 30.0% | |
| CAATAAGATCTATAGAGGAA+AGG | - | chr3_4:48900470-48900489 | None:intergenic | 30.0% | |
| GTGATCAATAAGATCTATAG+AGG | - | chr3_4:48900475-48900494 | None:intergenic | 30.0% | |
| GATCACTTAGATGATATCAA+TGG | + | chr3_4:48900489-48900508 | Msa0504430:intron | 30.0% | |
| AAATATGAGACAGGAAATTC+AGG | - | chr3_4:48900558-48900577 | None:intergenic | 30.0% | |
| ATTGGTGTAAGATACACTAT+AGG | - | chr3_4:48900759-48900778 | None:intergenic | 30.0% | |
| !!! | ACAAAGCTGTTTTTTGATTC+AGG | + | chr3_4:48900818-48900837 | Msa0504430:intron | 30.0% |
| !!! | TTTTTTGATTCAGGTGTCTT+AGG | + | chr3_4:48900827-48900846 | Msa0504430:intron | 30.0% |
| CAGAATCTTACAATTCTCTT+TGG | - | chr3_4:48900956-48900975 | None:intergenic | 30.0% | |
| !!! | TGTCCTATGATCCATTTTTT+AGG | + | chr3_4:48901025-48901044 | Msa0504430:CDS | 30.0% |
| GGATTTACAAGTACAATGAA+AGG | - | chr3_4:48901069-48901088 | None:intergenic | 30.0% | |
| GTTTGTGCTTTGTAGATTGA+AGG | + | chr3_4:48898729-48898748 | Msa0504430:intron | 35.0% | |
| ! | GTTTAGTTGGAATTTGAAGC+TGG | + | chr3_4:48898839-48898858 | Msa0504430:intron | 35.0% |
| !! | TTGCATGTTTGTTGTATTGG+TGG | + | chr3_4:48898970-48898989 | Msa0504430:intron | 35.0% |
| !! | TGCATGTTTGTTGTATTGGT+GGG | + | chr3_4:48898971-48898990 | Msa0504430:intron | 35.0% |
| AACAAGAGAGAGAAAAAGTG+GGG | - | chr3_4:48899257-48899276 | None:intergenic | 35.0% | |
| GAACAAGAGAGAGAAAAAGT+GGG | - | chr3_4:48899258-48899277 | None:intergenic | 35.0% | |
| TGAACAAGAGAGAGAAAAAG+TGG | - | chr3_4:48899259-48899278 | None:intergenic | 35.0% | |
| GCTCAGAATTCTAATCTATG+TGG | + | chr3_4:48899315-48899334 | Msa0504430:CDS | 35.0% | |
| !!! | AATTGCTTTTGTTGTTGTGC+AGG | + | chr3_4:48899468-48899487 | Msa0504430:intron | 35.0% |
| !!! | ATTGCTTTTGTTGTTGTGCA+GGG | + | chr3_4:48899469-48899488 | Msa0504430:intron | 35.0% |
| AACGGAAATTATGGAAGAAC+TGG | - | chr3_4:48899669-48899688 | None:intergenic | 35.0% | |
| GACAATGCAAGTACACAAAA+CGG | - | chr3_4:48899687-48899706 | None:intergenic | 35.0% | |
| ! | TTTTGCCTATTGCTCATTCA+GGG | + | chr3_4:48899869-48899888 | Msa0504430:intron | 35.0% |
| ATTGAAAGAGAACAGGAATG+TGG | + | chr3_4:48900105-48900124 | Msa0504430:CDS | 35.0% | |
| AACACTTGAAACACATTTGG+TGG | - | chr3_4:48900176-48900195 | None:intergenic | 35.0% | |
| ! | GTTTCAAGTGTTACAGAGAA+TGG | + | chr3_4:48900184-48900203 | Msa0504430:CDS | 35.0% |
| ACTGGAAACAATCTAAGGAT+GGG | - | chr3_4:48900244-48900263 | None:intergenic | 35.0% | |
| AACTGGAAACAATCTAAGGA+TGG | - | chr3_4:48900245-48900264 | None:intergenic | 35.0% | |
| AATGGCAACATTACAACTCT+AGG | - | chr3_4:48900366-48900385 | None:intergenic | 35.0% | |
| AGTCAAAAAAGTTGAGAGTG+AGG | + | chr3_4:48900580-48900599 | Msa0504430:intron | 35.0% | |
| !! | CCAATCTCTAAAGTGTAAAG+AGG | - | chr3_4:48900692-48900711 | None:intergenic | 35.0% |
| ! | CCTCTTTACACTTTAGAGAT+TGG | + | chr3_4:48900689-48900708 | Msa0504430:intron | 35.0% |
| TTGTGTCTGTGTAAATCCAA+AGG | - | chr3_4:48900906-48900925 | None:intergenic | 35.0% | |
| ACAAGTGACATTGTTGATGT+TGG | + | chr3_4:48900922-48900941 | Msa0504430:CDS | 35.0% | |
| CAAGTGACATTGTTGATGTT+GGG | + | chr3_4:48900923-48900942 | Msa0504430:CDS | 35.0% | |
| GAGACACAAATTCGAGACAT+CGG | - | chr3_4:48898708-48898727 | None:intergenic | 40.0% | |
| !!! | TCACTGTTTTTCAGGGCATT+AGG | + | chr3_4:48899172-48899191 | Msa0504430:intron | 40.0% |
| AAGGAGGATGCTTTCAAATG+AGG | + | chr3_4:48899212-48899231 | Msa0504430:CDS | 40.0% | |
| TTGTCAAATAGTAGCTGCAG+CGG | + | chr3_4:48899581-48899600 | Msa0504430:intron | 40.0% | |
| ! | GTTTTGCCTATTGCTCATTC+AGG | + | chr3_4:48899868-48899887 | Msa0504430:intron | 40.0% |
| !! | TTCTGAAGTTGCAATAGAGC+AGG | - | chr3_4:48899985-48900004 | None:intergenic | 40.0% |
| GCTCTATTGCAACTTCAGAA+AGG | + | chr3_4:48899985-48900004 | Msa0504430:CDS | 40.0% | |
| !! | TCAGAAAGGTGTCACAGATT+TGG | + | chr3_4:48899999-48900018 | Msa0504430:CDS | 40.0% |
| GTGTCACAGATTTGGAAGAA+AGG | + | chr3_4:48900007-48900026 | Msa0504430:CDS | 40.0% | |
| ! | CACATTTGGTGGCAACAATT+AGG | - | chr3_4:48900165-48900184 | None:intergenic | 40.0% |
| ! | GCAACATTACAACTCTAGGA+TGG | - | chr3_4:48900362-48900381 | None:intergenic | 40.0% |
| ! | CTTGGGTCTGGAATAATAAG+AGG | - | chr3_4:48901000-48901019 | None:intergenic | 40.0% |
| GATCATAGGACACATGTCTT+GGG | - | chr3_4:48901017-48901036 | None:intergenic | 40.0% | |
| CTCCTTCTTTATCCCTAGGA+TGG | - | chr3_4:48899198-48899217 | None:intergenic | 45.0% | |
| CATCCTAGGGATAAAGAAGG+AGG | + | chr3_4:48899196-48899215 | Msa0504430:CDS | 45.0% | |
| CATCCTCCTTCTTTATCCCT+AGG | - | chr3_4:48899202-48899221 | None:intergenic | 45.0% | |
| GAGGCTATCATATAGTCCAG+TGG | + | chr3_4:48899231-48899250 | Msa0504430:CDS | 45.0% | |
| !! | GTTTTAGTGGCCTTACCCTT+AGG | - | chr3_4:48899499-48899518 | None:intergenic | 45.0% |
| AGACACCCTGAATGAGCAAT+AGG | - | chr3_4:48899877-48899896 | None:intergenic | 45.0% | |
| ! | TTGCTCATTCAGGGTGTCTT+TGG | + | chr3_4:48899878-48899897 | Msa0504430:intron | 45.0% |
| ! | ACAGGAATGTGGAGTTTGCT+TGG | + | chr3_4:48900116-48900135 | Msa0504430:CDS | 45.0% |
| !! | ACAACTCTAGGATGGCCAAA+AGG | - | chr3_4:48900354-48900373 | None:intergenic | 45.0% |
| TTACTCTCTTCAGGCTATCC+CGG | - | chr3_4:48900873-48900892 | None:intergenic | 45.0% | |
| AGCCTGAAGAGAGTAAACTC+TGG | + | chr3_4:48900877-48900896 | Msa0504430:CDS | 45.0% | |
| CACCAGAGTTTACTCTCTTC+AGG | - | chr3_4:48900882-48900901 | None:intergenic | 45.0% | |
| GAGTAAACTCTGGTGACCTT+TGG | + | chr3_4:48900887-48900906 | Msa0504430:CDS | 45.0% | |
| GGATCATAGGACACATGTCT+TGG | - | chr3_4:48901018-48901037 | None:intergenic | 45.0% | |
| GGCCATCCTAGGGATAAAGA+AGG | + | chr3_4:48899193-48899212 | Msa0504430:CDS | 50.0% | |
| !! | TGGACTGATTACCGACTTGC+TGG | + | chr3_4:48899280-48899299 | Msa0504430:CDS | 50.0% |
| !! | AACCAAGAGCACCAGCAAGT+CGG | - | chr3_4:48899294-48899313 | None:intergenic | 50.0% |
| !!! | CTTTTGTTGTTGTGCAGGGC+CGG | + | chr3_4:48899473-48899492 | Msa0504430:intron | 50.0% |
| AAATAGCGCACCGCACAACA+GGG | - | chr3_4:48899549-48899568 | None:intergenic | 50.0% | |
| TAAATAGCGCACCGCACAAC+AGG | - | chr3_4:48899550-48899569 | None:intergenic | 50.0% | |
| GCTATGGCACTACAGTGTAG+CGG | + | chr3_4:48899605-48899624 | Msa0504430:intron | 50.0% | |
| ! | CTCAATCTTGCCCCTTTTGC+CGG | + | chr3_4:48900851-48900870 | Msa0504430:CDS | 50.0% |
| ! | TCAATCTTGCCCCTTTTGCC+GGG | + | chr3_4:48900852-48900871 | Msa0504430:CDS | 50.0% |
| TTCAGGCTATCCCGGCAAAA+GGG | - | chr3_4:48900865-48900884 | None:intergenic | 50.0% | |
| TAGGACACATGTCTTGGGTC+TGG | - | chr3_4:48901012-48901031 | None:intergenic | 50.0% | |
| ! | TCAGGGCATTAGGCCATCCT+AGG | + | chr3_4:48899182-48899201 | Msa0504430:intron | 55.0% |
| ! | CAGGGCATTAGGCCATCCTA+GGG | + | chr3_4:48899183-48899202 | Msa0504430:intron | 55.0% |
| GAGAGAAAAAGTGGGGCCAC+TGG | - | chr3_4:48899250-48899269 | None:intergenic | 55.0% | |
| !! | TACCGACTTGCTGGTGCTCT+TGG | + | chr3_4:48899289-48899308 | Msa0504430:CDS | 55.0% |
| ! | TAGTGGCCTTACCCTTAGGC+CGG | - | chr3_4:48899495-48899514 | None:intergenic | 55.0% |
| ! | TAGTAGCTGCAGCGGTGCTA+TGG | + | chr3_4:48899589-48899608 | Msa0504430:intron | 55.0% |
| TCAGGCTATCCCGGCAAAAG+GGG | - | chr3_4:48900864-48900883 | None:intergenic | 55.0% | |
| CTTCAGGCTATCCCGGCAAA+AGG | - | chr3_4:48900866-48900885 | None:intergenic | 55.0% | |
| TGTTGTGCAGGGCCGGCCTA+AGG | + | chr3_4:48899480-48899499 | Msa0504430:intron | 65.0% | |
| GTTGTGCAGGGCCGGCCTAA+GGG | + | chr3_4:48899481-48899500 | Msa0504430:intron | 65.0% | |
| ATTGGGCCGGCCCTGTTGTG+CGG | + | chr3_4:48899536-48899555 | Msa0504430:intron | 65.0% | |
| GCAGGGCCGGCCTAAGGGTA+AGG | + | chr3_4:48899486-48899505 | Msa0504430:intron | 70.0% | |
| AGCGCACCGCACAACAGGGC+CGG | - | chr3_4:48899545-48899564 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 48898271 | 48901133 | 48898271 | ID=Msa0504430;Name=Msa0504430 |
| chr3_4 | mRNA | 48898271 | 48901133 | 48898271 | ID=Msa0504430-mRNA-1;Parent=Msa0504430;Name=Msa0504430-mRNA-1;_AED=0.12;_eAED=0.12;_QI=12|1|1|1|1|1|5|83|255 |
| chr3_4 | exon | 48898271 | 48898386 | 48898271 | ID=Msa0504430-mRNA-1:exon:10521;Parent=Msa0504430-mRNA-1 |
| chr3_4 | exon | 48899186 | 48899336 | 48899186 | ID=Msa0504430-mRNA-1:exon:10522;Parent=Msa0504430-mRNA-1 |
| chr3_4 | exon | 48899757 | 48899823 | 48899757 | ID=Msa0504430-mRNA-1:exon:10523;Parent=Msa0504430-mRNA-1 |
| chr3_4 | exon | 48899971 | 48900205 | 48899971 | ID=Msa0504430-mRNA-1:exon:10524;Parent=Msa0504430-mRNA-1 |
| chr3_4 | exon | 48900840 | 48901133 | 48900840 | ID=Msa0504430-mRNA-1:exon:10525;Parent=Msa0504430-mRNA-1 |
| chr3_4 | five_prime_UTR | 48898271 | 48898282 | 48898271 | ID=Msa0504430-mRNA-1:five_prime_utr;Parent=Msa0504430-mRNA-1 |
| chr3_4 | CDS | 48898283 | 48898386 | 48898283 | ID=Msa0504430-mRNA-1:cds;Parent=Msa0504430-mRNA-1 |
| chr3_4 | CDS | 48899186 | 48899336 | 48899186 | ID=Msa0504430-mRNA-1:cds;Parent=Msa0504430-mRNA-1 |
| chr3_4 | CDS | 48899757 | 48899823 | 48899757 | ID=Msa0504430-mRNA-1:cds;Parent=Msa0504430-mRNA-1 |
| chr3_4 | CDS | 48899971 | 48900205 | 48899971 | ID=Msa0504430-mRNA-1:cds;Parent=Msa0504430-mRNA-1 |
| chr3_4 | CDS | 48900840 | 48901050 | 48900840 | ID=Msa0504430-mRNA-1:cds;Parent=Msa0504430-mRNA-1 |
| chr3_4 | three_prime_UTR | 48901051 | 48901133 | 48901051 | ID=Msa0504430-mRNA-1:three_prime_utr;Parent=Msa0504430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
