Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0686290 | XP_003606934.1 | 92.982 | 285 | 20 | 0 | 2 | 286 | 46 | 330 | 0.0 | 553 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0686290 | sp|O81355|PYRC5_PYRCO | 62.595 | 262 | 98 | 0 | 3 | 264 | 45 | 306 | 4.86e-123 | 356 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0686290 | G7JHC1 | 92.982 | 285 | 20 | 0 | 2 | 286 | 46 | 330 | 0.0 | 553 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0550390 | Msa0686290 | 0.818945 | 1.504155e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0686290 | MtrunA17_Chr4g0035111 | 92.982 | 285 | 20 | 0 | 2 | 286 | 46 | 330 | 0.0 | 553 |
| Msa0686290 | MtrunA17_Chr4g0035131 | 63.669 | 278 | 101 | 0 | 3 | 280 | 85 | 362 | 6.96e-129 | 370 |
| Msa0686290 | MtrunA17_Chr3g0144701 | 62.595 | 262 | 98 | 0 | 3 | 264 | 49 | 310 | 6.41e-121 | 348 |
| Msa0686290 | MtrunA17_Chr3g0141691 | 59.004 | 261 | 107 | 0 | 3 | 263 | 45 | 305 | 3.34e-113 | 328 |
| Msa0686290 | MtrunA17_Chr3g0141681 | 57.955 | 264 | 109 | 1 | 3 | 264 | 45 | 308 | 1.42e-110 | 322 |
| Msa0686290 | MtrunA17_Chr5g0404471 | 56.923 | 260 | 112 | 0 | 3 | 262 | 46 | 305 | 4.70e-108 | 315 |
| Msa0686290 | MtrunA17_Chr5g0404481 | 52.290 | 262 | 124 | 1 | 3 | 264 | 56 | 316 | 2.26e-87 | 263 |
| Msa0686290 | MtrunA17_Chr5g0404511 | 51.908 | 262 | 125 | 1 | 3 | 264 | 56 | 316 | 4.21e-87 | 263 |
| Msa0686290 | MtrunA17_Chr4g0035121 | 38.783 | 263 | 159 | 1 | 3 | 263 | 44 | 306 | 4.72e-69 | 216 |
| Msa0686290 | MtrunA17_Chr8g0369391 | 43.295 | 261 | 141 | 3 | 9 | 263 | 50 | 309 | 7.88e-66 | 208 |
| Msa0686290 | MtrunA17_Chr5g0409641 | 40.520 | 269 | 152 | 3 | 1 | 263 | 42 | 308 | 6.94e-62 | 198 |
| Msa0686290 | MtrunA17_Chr5g0409651 | 40.149 | 269 | 153 | 3 | 1 | 263 | 42 | 308 | 1.08e-61 | 197 |
| Msa0686290 | MtrunA17_Chr3g0078901 | 38.403 | 263 | 157 | 3 | 2 | 264 | 46 | 303 | 9.92e-61 | 195 |
| Msa0686290 | MtrunA17_Chr3g0078831 | 37.879 | 264 | 159 | 3 | 1 | 264 | 45 | 303 | 2.33e-58 | 189 |
| Msa0686290 | MtrunA17_Chr1g0198771 | 33.208 | 265 | 175 | 1 | 1 | 263 | 51 | 315 | 5.50e-48 | 163 |
| Msa0686290 | MtrunA17_Chr3g0078941 | 35.678 | 199 | 123 | 3 | 62 | 260 | 12 | 205 | 2.60e-39 | 137 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0686290 | AT4G39230.1 | 60.618 | 259 | 102 | 0 | 2 | 260 | 44 | 302 | 3.11e-112 | 327 |
| Msa0686290 | AT1G75290.1 | 55.894 | 263 | 114 | 1 | 2 | 262 | 45 | 307 | 2.06e-101 | 299 |
| Msa0686290 | AT1G75280.1 | 57.252 | 262 | 109 | 2 | 3 | 262 | 46 | 306 | 3.14e-101 | 298 |
| Msa0686290 | AT1G75290.2 | 55.894 | 263 | 114 | 1 | 2 | 262 | 72 | 334 | 7.39e-101 | 299 |
| Msa0686290 | AT1G75300.1 | 51.439 | 278 | 116 | 3 | 3 | 264 | 46 | 320 | 1.59e-89 | 269 |
| Msa0686290 | AT1G19540.1 | 48.485 | 264 | 132 | 2 | 3 | 262 | 43 | 306 | 1.07e-82 | 251 |
| Msa0686290 | AT4G34540.1 | 41.825 | 263 | 153 | 0 | 1 | 263 | 41 | 303 | 7.49e-75 | 231 |
| Msa0686290 | AT1G19540.2 | 49.296 | 213 | 104 | 2 | 3 | 211 | 43 | 255 | 2.84e-65 | 205 |
| Msa0686290 | AT4G13660.1 | 42.697 | 267 | 145 | 3 | 3 | 263 | 50 | 314 | 7.61e-64 | 203 |
| Msa0686290 | AT4G13660.2 | 42.697 | 267 | 145 | 3 | 3 | 263 | 50 | 314 | 7.61e-64 | 203 |
| Msa0686290 | AT1G32100.1 | 41.948 | 267 | 147 | 3 | 2 | 262 | 49 | 313 | 1.24e-63 | 203 |
Find 76 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATAACCAATTTAAGTAAAA+TGG | 0.121188 | 4_4:-50718307 | None:intergenic |
| CTCAATGGCCCTACGAAATT+TGG | 0.190021 | 4_4:-50717144 | None:intergenic |
| GTCACCTTATCCTGTAAATA+TGG | 0.192397 | 4_4:+50718135 | Msa0686290:CDS |
| ACAAATCAATTTCTTTGTTA+TGG | 0.218072 | 4_4:+50718394 | Msa0686290:three_prime_UTR |
| CACCCAATGTATTGAAATTC+TGG | 0.222739 | 4_4:-50714752 | None:intergenic |
| GCTAGTATATTGTTTAATTA+AGG | 0.246395 | 4_4:+50718367 | Msa0686290:three_prime_UTR |
| AGGTTCTTTCCATCTGAATT+TGG | 0.248424 | 4_4:+50717062 | Msa0686290:CDS |
| ATCTTCAGTACTTGCTTTCC+TGG | 0.255833 | 4_4:-50717692 | None:intergenic |
| CAAATCAATTTCTTTGTTAT+GGG | 0.263323 | 4_4:+50718395 | Msa0686290:three_prime_UTR |
| TCTATCTTTGACTCTATTGA+TGG | 0.297913 | 4_4:-50718453 | None:intergenic |
| ATTGCAAGGCCCATATTTAC+AGG | 0.311260 | 4_4:-50718145 | None:intergenic |
| CTTCATTCACTCCATGATTT+CGG | 0.323639 | 4_4:-50717097 | None:intergenic |
| ACAATGACCTAGTATCTCTT+TGG | 0.331162 | 4_4:+50717630 | Msa0686290:CDS |
| TGTCTCAATGATTTATTACT+TGG | 0.334727 | 4_4:-50718520 | None:intergenic |
| ATTGGGTGTCAACGTAGTTT+TGG | 0.338808 | 4_4:+50714767 | Msa0686290:CDS |
| AGGATAATAACTGAATCTAA+TGG | 0.357946 | 4_4:-50717257 | None:intergenic |
| TAGATTCAGTTATTATCCTT+GGG | 0.359380 | 4_4:+50717261 | Msa0686290:CDS |
| ATAACCAATTTAAGTAAAAT+GGG | 0.369317 | 4_4:-50718306 | None:intergenic |
| TCTCAATGATATATGAATAA+AGG | 0.385704 | 4_4:+50718550 | Msa0686290:three_prime_UTR |
| CAAGGTTCTTGGATCATCAA+TGG | 0.395204 | 4_4:-50717564 | None:intergenic |
| GGCCTTGCAATTTGTCTGGC+TGG | 0.398360 | 4_4:+50718157 | Msa0686290:CDS |
| CACTTTGGATGAGTACTTTG+AGG | 0.399801 | 4_4:+50718267 | Msa0686290:CDS |
| TTAGATTCAGTTATTATCCT+TGG | 0.404938 | 4_4:+50717260 | Msa0686290:CDS |
| ATCCAGAATTTCAATACATT+GGG | 0.406000 | 4_4:+50714750 | Msa0686290:CDS |
| TATATACGACCACCAGAGTT+TGG | 0.407580 | 4_4:+50716646 | Msa0686290:CDS |
| CAATGACCTAGTATCTCTTT+GGG | 0.423107 | 4_4:+50717631 | Msa0686290:CDS |
| TATGGGCCTTGCAATTTGTC+TGG | 0.430083 | 4_4:+50718153 | Msa0686290:CDS |
| CATCCAGAATTTCAATACAT+TGG | 0.439717 | 4_4:+50714749 | Msa0686290:CDS |
| AGGCCCATATTTACAGGATA+AGG | 0.455077 | 4_4:-50718139 | None:intergenic |
| TAAAGAGGCGGGAAACGTTA+AGG | 0.462126 | 4_4:+50716754 | Msa0686290:CDS |
| AAAGTGATATATTTGACATC+AGG | 0.462962 | 4_4:-50718250 | None:intergenic |
| CAAGTACTGAAGATGATTCA+AGG | 0.467947 | 4_4:+50717701 | Msa0686290:CDS |
| AATGGCTGTATTTGATACTA+AGG | 0.470877 | 4_4:+50717121 | Msa0686290:CDS |
| TCACCTTATCCTGTAAATAT+GGG | 0.480725 | 4_4:+50718136 | Msa0686290:CDS |
| CGTAGGGCCATTGAGGATGA+AGG | 0.491914 | 4_4:+50717152 | Msa0686290:CDS |
| TTATGACTTTAACCAAACTC+TGG | 0.495669 | 4_4:-50716658 | None:intergenic |
| AGTTTGCAACCACATAGGTA+TGG | 0.497796 | 4_4:-50717181 | None:intergenic |
| TCAGTTATTATCCTTGGGGA+TGG | 0.500827 | 4_4:+50717266 | Msa0686290:CDS |
| TGTATTGAAATTCTGGATGA+TGG | 0.504017 | 4_4:-50714745 | None:intergenic |
| CAAATTTCGTAGGGCCATTG+AGG | 0.507301 | 4_4:+50717145 | Msa0686290:CDS |
| CGAAATCATGGAGTGAATGA+AGG | 0.517474 | 4_4:+50717098 | Msa0686290:CDS |
| ACATCATTTCCAAATTCAGA+TGG | 0.518619 | 4_4:-50717071 | None:intergenic |
| ATACTAAGGCCAAATTTCGT+AGG | 0.520792 | 4_4:+50717135 | Msa0686290:CDS |
| GGGAATTCCTTCATCCTCAA+TGG | 0.522128 | 4_4:-50717159 | None:intergenic |
| TATGAAATTGATCCCTCCAC+TGG | 0.530505 | 4_4:+50718205 | Msa0686290:CDS |
| GTTTGCAACCACATAGGTAT+GGG | 0.531410 | 4_4:-50717180 | None:intergenic |
| CTTGCTGCTATTAAAGAGGC+GGG | 0.539482 | 4_4:+50716743 | Msa0686290:CDS |
| TGATGTCAAATATATCACTT+TGG | 0.539498 | 4_4:+50718252 | Msa0686290:CDS |
| TTCTGAAGCTTCTATTCCAG+TGG | 0.539530 | 4_4:-50718221 | None:intergenic |
| AATGATGTGGACCGAAATCA+TGG | 0.540715 | 4_4:+50717086 | Msa0686290:CDS |
| TACTAAGGCCAAATTTCGTA+GGG | 0.556755 | 4_4:+50717136 | Msa0686290:CDS |
| CTTTGGTATTTCCATCCCCA+AGG | 0.559911 | 4_4:-50717277 | None:intergenic |
| ATCTGAATTTGGAAATGATG+TGG | 0.563360 | 4_4:+50717073 | Msa0686290:CDS |
| TCAATAAGTTGTGATTGAGT+TGG | 0.574854 | 4_4:-50717224 | None:intergenic |
| TAAGTTGTGATTGAGTTGGT+AGG | 0.575098 | 4_4:-50717220 | None:intergenic |
| TGAAGCTTCTATTCCAGTGG+AGG | 0.580751 | 4_4:-50718218 | None:intergenic |
| TCTTCTCCCAAAGAGATACT+AGG | 0.582651 | 4_4:-50717637 | None:intergenic |
| ATTGTATGACAATGTGTTCG+TGG | 0.582720 | 4_4:-50717612 | None:intergenic |
| GGTTAAAGTCATAAAGCAAG+TGG | 0.584445 | 4_4:+50716667 | Msa0686290:CDS |
| GATCCTTGCTGCTATTAAAG+AGG | 0.586795 | 4_4:+50716739 | Msa0686290:CDS |
| AGATTCAGTTATTATCCTTG+GGG | 0.592266 | 4_4:+50717262 | Msa0686290:CDS |
| TGTCTGGCTGGATATGTGAA+TGG | 0.595623 | 4_4:+50718169 | Msa0686290:CDS |
| TGACTTTAACCAAACTCTGG+TGG | 0.598483 | 4_4:-50716655 | None:intergenic |
| CCGCCTCTTTAATAGCAGCA+AGG | 0.600823 | 4_4:-50716742 | None:intergenic |
| CTTGGGGATGGAAATACCAA+AGG | 0.606722 | 4_4:+50717278 | Msa0686290:CDS |
| TCATGGAGTGAATGAAGGAA+TGG | 0.610573 | 4_4:+50717103 | Msa0686290:CDS |
| CCTTGCTGCTATTAAAGAGG+CGG | 0.611304 | 4_4:+50716742 | Msa0686290:CDS |
| GAGAAAGTTTGCAACCACAT+AGG | 0.622252 | 4_4:-50717186 | None:intergenic |
| TGGTTATTATCACTTAACAA+AGG | 0.628967 | 4_4:+50718322 | Msa0686290:CDS |
| ATCCAGCCAGACAAATTGCA+AGG | 0.631936 | 4_4:-50718159 | None:intergenic |
| TTGTATGACAATGTGTTCGT+GGG | 0.632280 | 4_4:-50717611 | None:intergenic |
| AGGAATTCCCCATACCTATG+TGG | 0.644732 | 4_4:+50717172 | Msa0686290:CDS |
| GAAGCTTCTATTCCAGTGGA+GGG | 0.644987 | 4_4:-50718217 | None:intergenic |
| TAACCAATTTAAGTAAAATG+GGG | 0.651754 | 4_4:-50718305 | None:intergenic |
| TATGACAATGTGTTCGTGGG+AGG | 0.672276 | 4_4:-50717608 | None:intergenic |
| TTTGCAACCACATAGGTATG+GGG | 0.684763 | 4_4:-50717179 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATACTAAAATTAATATGA+CGG | - | chr4_4:50715256-50715275 | None:intergenic | 10.0% |
| !! | AATATTTAATAACTGTAATT+CGG | + | chr4_4:50715332-50715351 | Msa0686290:intron | 10.0% |
| !!! | TTTTTTTTACAAACTTTATA+AGG | - | chr4_4:50715602-50715621 | None:intergenic | 10.0% |
| !! | TTTGTAAAAAAAAAAAAAGA+TGG | + | chr4_4:50715609-50715628 | Msa0686290:intron | 10.0% |
| !! | TAGATAATTAAAGATATTAA+CGG | + | chr4_4:50716418-50716437 | Msa0686290:intron | 10.0% |
| !! | ATAAATCAATAATAATTATG+AGG | - | chr4_4:50716545-50716564 | None:intergenic | 10.0% |
| !!! | TAATGAATAACTTTTTTTTT+TGG | + | chr4_4:50716914-50716933 | Msa0686290:intron | 10.0% |
| !!! | AAGTAAATTTCTAATTTTAA+AGG | - | chr4_4:50717320-50717339 | None:intergenic | 10.0% |
| !!! | TTTTTGTTTATATTTAAAAC+CGG | - | chr4_4:50717357-50717376 | None:intergenic | 10.0% |
| !! | AAAAAAAAAATACTATTATG+CGG | + | chr4_4:50718428-50718447 | Msa0686290:three_prime_UTR | 10.0% |
| !! | TTAAAGCAAATAAAATAGTT+AGG | - | chr4_4:50715211-50715230 | None:intergenic | 15.0% |
| !! | TATACTAAAATTAATATGAC+GGG | - | chr4_4:50715255-50715274 | None:intergenic | 15.0% |
| !!! | GTATTAAATCTAGTTTAATT+TGG | - | chr4_4:50715374-50715393 | None:intergenic | 15.0% |
| !! | TAAACTAGATTTAATACAAA+TGG | + | chr4_4:50715377-50715396 | Msa0686290:intron | 15.0% |
| !!! | TTTTTCTTTGTTTTATGATT+TGG | - | chr4_4:50715535-50715554 | None:intergenic | 15.0% |
| !! | TATACATTAGTTAAAAAGTA+TGG | - | chr4_4:50716314-50716333 | None:intergenic | 15.0% |
| !!! | AATAATTTTTCAAGTAATTG+AGG | + | chr4_4:50717799-50717818 | Msa0686290:intron | 15.0% |
| !! | TTTAGTGTAATTATATGTAT+CGG | - | chr4_4:50717963-50717982 | None:intergenic | 15.0% |
| !! | TTAAGATTATATGCATATTA+AGG | + | chr4_4:50718071-50718090 | Msa0686290:intron | 15.0% |
| !! | ATAACCAATTTAAGTAAAAT+GGG | - | chr4_4:50718309-50718328 | None:intergenic | 15.0% |
| !! | AATAACCAATTTAAGTAAAA+TGG | - | chr4_4:50718310-50718329 | None:intergenic | 15.0% |
| !!! | ATTTGCAGCTTTAAAAAAAA+TGG | - | chr4_4:50714883-50714902 | None:intergenic | 20.0% |
| !!! | TCTATGGTTTTCTTTTAAAT+CGG | - | chr4_4:50714949-50714968 | None:intergenic | 20.0% |
| !! | TAGATTTAATACAAATGGAT+TGG | + | chr4_4:50715382-50715401 | Msa0686290:intron | 20.0% |
| !!! | TTATTTTATCCAAAGTAGTT+TGG | - | chr4_4:50715431-50715450 | None:intergenic | 20.0% |
| !!! | GATAAGTGGTATTTTTTTTT+TGG | + | chr4_4:50715638-50715657 | Msa0686290:intron | 20.0% |
| !!! | TTTTTTTTGACAAGTATTAG+CGG | + | chr4_4:50715697-50715716 | Msa0686290:intron | 20.0% |
| !! | ATGATAATAAGTGGTTAATT+TGG | - | chr4_4:50715792-50715811 | None:intergenic | 20.0% |
| !! | TTAGTTGACTAAAATAAGAT+AGG | + | chr4_4:50715856-50715875 | Msa0686290:intron | 20.0% |
| !!! | ATTTGTATTTTGGTAAACAA+CGG | - | chr4_4:50715914-50715933 | None:intergenic | 20.0% |
| !! | TATAATTCTTTCTTATACAG+AGG | + | chr4_4:50717042-50717061 | Msa0686290:intron | 20.0% |
| !!! | AATATAGAGAATTTTGTTCA+AGG | - | chr4_4:50717585-50717604 | None:intergenic | 20.0% |
| !! | CTTAAAAAAATCTATATTCC+AGG | + | chr4_4:50717674-50717693 | Msa0686290:CDS | 20.0% |
| !!! | AGTATTGATTTATTCATTCA+AGG | + | chr4_4:50717843-50717862 | Msa0686290:intron | 20.0% |
| !! | TAACCAATTTAAGTAAAATG+GGG | - | chr4_4:50718308-50718327 | None:intergenic | 20.0% |
| !! | GCTAGTATATTGTTTAATTA+AGG | + | chr4_4:50718367-50718386 | Msa0686290:three_prime_UTR | 20.0% |
| !! | ACAAATCAATTTCTTTGTTA+TGG | + | chr4_4:50718394-50718413 | Msa0686290:three_prime_UTR | 20.0% |
| !!! | CAAATCAATTTCTTTGTTAT+GGG | + | chr4_4:50718395-50718414 | Msa0686290:three_prime_UTR | 20.0% |
| !! | TCTCAATGATATATGAATAA+AGG | + | chr4_4:50718550-50718569 | Msa0686290:three_prime_UTR | 20.0% |
| ! | ATCCAGAATTTCAATACATT+GGG | + | chr4_4:50714750-50714769 | Msa0686290:CDS | 25.0% |
| !!! | AGTATTGATATTTATGTGTG+CGG | - | chr4_4:50715093-50715112 | None:intergenic | 25.0% |
| ! | TATAATCTTCCAAACTACTT+TGG | + | chr4_4:50715419-50715438 | Msa0686290:intron | 25.0% |
| ! | TTTGAATACCCTTGTATTTA+GGG | - | chr4_4:50715493-50715512 | None:intergenic | 25.0% |
| !!! | TTTTTGGTACAAATGATAAG+TGG | + | chr4_4:50715654-50715673 | Msa0686290:intron | 25.0% |
| !! | GATAAGTGGTATTTTATTAG+CGG | + | chr4_4:50715668-50715687 | Msa0686290:intron | 25.0% |
| !! | ATAATAAGTGGTTAATTTGG+TGG | - | chr4_4:50715789-50715808 | None:intergenic | 25.0% |
| !! | ATAATCCATGAACTTTTCTA+AGG | + | chr4_4:50715981-50716000 | Msa0686290:intron | 25.0% |
| ! | TCATTTACTTAGTAGATTGA+CGG | - | chr4_4:50716038-50716057 | None:intergenic | 25.0% |
| ! | ACTAAGTAAATGATATCTAC+CGG | + | chr4_4:50716045-50716064 | Msa0686290:intron | 25.0% |
| !!! | ATTGGACATGTATTTTGAAA+CGG | - | chr4_4:50716255-50716274 | None:intergenic | 25.0% |
| ! | TGATTTATAACACGTTGTTA+TGG | + | chr4_4:50716557-50716576 | Msa0686290:intron | 25.0% |
| ! | GATTTATAACACGTTGTTAT+GGG | + | chr4_4:50716558-50716577 | Msa0686290:intron | 25.0% |
| ! | ATTTATAACACGTTGTTATG+GGG | + | chr4_4:50716559-50716578 | Msa0686290:intron | 25.0% |
| !!! | ATTGATGTTGATTTTTTGAC+AGG | + | chr4_4:50716619-50716638 | Msa0686290:intron | 25.0% |
| !!! | TTGATGTTGATTTTTTGACA+GGG | + | chr4_4:50716620-50716639 | Msa0686290:intron | 25.0% |
| !! | ATTTTGTATTTATGCACTGT+CGG | - | chr4_4:50717005-50717024 | None:intergenic | 25.0% |
| ! | AGGATAATAACTGAATCTAA+TGG | - | chr4_4:50717260-50717279 | None:intergenic | 25.0% |
| ! | TTAGATTCAGTTATTATCCT+TGG | + | chr4_4:50717260-50717279 | Msa0686290:CDS | 25.0% |
| ! | TAGATTCAGTTATTATCCTT+GGG | + | chr4_4:50717261-50717280 | Msa0686290:CDS | 25.0% |
| !!! | ATATTTGTGCTTTTTACCTT+TGG | - | chr4_4:50717297-50717316 | None:intergenic | 25.0% |
| !! | TGTTTATATTTAAAACCGGA+GGG | - | chr4_4:50717353-50717372 | None:intergenic | 25.0% |
| !! | TTGTTTATATTTAAAACCGG+AGG | - | chr4_4:50717354-50717373 | None:intergenic | 25.0% |
| ! | AAAGTGATATATTTGACATC+AGG | - | chr4_4:50718253-50718272 | None:intergenic | 25.0% |
| ! | TGATGTCAAATATATCACTT+TGG | + | chr4_4:50718252-50718271 | Msa0686290:CDS | 25.0% |
| ! | TGGTTATTATCACTTAACAA+AGG | + | chr4_4:50718322-50718341 | Msa0686290:CDS | 25.0% |
| !! | AAATTTTACAACTCAAGACA+AGG | - | chr4_4:50718494-50718513 | None:intergenic | 25.0% |
| ! | TGTCTCAATGATTTATTACT+TGG | - | chr4_4:50718523-50718542 | None:intergenic | 25.0% |
| TGTATTGAAATTCTGGATGA+TGG | - | chr4_4:50714748-50714767 | None:intergenic | 30.0% | |
| CATCCAGAATTTCAATACAT+TGG | + | chr4_4:50714749-50714768 | Msa0686290:CDS | 30.0% | |
| AACAAAGTCATGAAAAGAAC+TGG | - | chr4_4:50714854-50714873 | None:intergenic | 30.0% | |
| ! | GGTTTTCTTTTAAATCGGTT+AGG | - | chr4_4:50714944-50714963 | None:intergenic | 30.0% |
| !! | CAGTTTTTCAGATCAATCTA+TGG | - | chr4_4:50714965-50714984 | None:intergenic | 30.0% |
| ! | GTTCTTTTGTAAAAACCTCT+CGG | + | chr4_4:50715025-50715044 | Msa0686290:intron | 30.0% |
| TTGTAAACACCCTAAATACA+AGG | + | chr4_4:50715481-50715500 | Msa0686290:intron | 30.0% | |
| TGTAAACACCCTAAATACAA+GGG | + | chr4_4:50715482-50715501 | Msa0686290:intron | 30.0% | |
| GTTTGAATACCCTTGTATTT+AGG | - | chr4_4:50715494-50715513 | None:intergenic | 30.0% | |
| AGCTGTAGAATGATAATAAG+TGG | - | chr4_4:50715801-50715820 | None:intergenic | 30.0% | |
| AAAGTCCTTAGAAAAGTTCA+TGG | - | chr4_4:50715989-50716008 | None:intergenic | 30.0% | |
| TAAAATAATCTAGATGTCGC+CGG | - | chr4_4:50716067-50716086 | None:intergenic | 30.0% | |
| ATAGTGCACATTGCAAAAAT+TGG | - | chr4_4:50716273-50716292 | None:intergenic | 30.0% | |
| !! | CTTGGACATGTATTTTGAAA+CGG | + | chr4_4:50716476-50716495 | Msa0686290:intron | 30.0% |
| GTACGTTGTTTGGTATTTAT+TGG | + | chr4_4:50716584-50716603 | Msa0686290:intron | 30.0% | |
| GTTGTTTGGTATTTATTGGT+AGG | + | chr4_4:50716588-50716607 | Msa0686290:intron | 30.0% | |
| TTATGACTTTAACCAAACTC+TGG | - | chr4_4:50716661-50716680 | None:intergenic | 30.0% | |
| ACATCATTTCCAAATTCAGA+TGG | - | chr4_4:50717074-50717093 | None:intergenic | 30.0% | |
| ATCTGAATTTGGAAATGATG+TGG | + | chr4_4:50717073-50717092 | Msa0686290:CDS | 30.0% | |
| AATGGCTGTATTTGATACTA+AGG | + | chr4_4:50717121-50717140 | Msa0686290:CDS | 30.0% | |
| TCAATAAGTTGTGATTGAGT+TGG | - | chr4_4:50717227-50717246 | None:intergenic | 30.0% | |
| AGATTCAGTTATTATCCTTG+GGG | + | chr4_4:50717262-50717281 | Msa0686290:CDS | 30.0% | |
| ! | AGAATTTTGTTCAAGGTTCT+TGG | - | chr4_4:50717578-50717597 | None:intergenic | 30.0% |
| ATGAATGCAGATACAAACAT+TGG | - | chr4_4:50718042-50718061 | None:intergenic | 30.0% | |
| TCACCTTATCCTGTAAATAT+GGG | + | chr4_4:50718136-50718155 | Msa0686290:CDS | 30.0% | |
| TCTATCTTTGACTCTATTGA+TGG | - | chr4_4:50718456-50718475 | None:intergenic | 30.0% | |
| CACCCAATGTATTGAAATTC+TGG | - | chr4_4:50714755-50714774 | None:intergenic | 35.0% | |
| AAAAACCTCTCGGATGAAAT+TGG | + | chr4_4:50715035-50715054 | Msa0686290:intron | 35.0% | |
| AAAATCCAATTTCATCCGAG+AGG | - | chr4_4:50715043-50715062 | None:intergenic | 35.0% | |
| TGATATTTATGTGTGCGGTA+TGG | - | chr4_4:50715088-50715107 | None:intergenic | 35.0% | |
| ! | AGGGTGTTTACAATGTTGTT+TGG | - | chr4_4:50715474-50715493 | None:intergenic | 35.0% |
| ! | AGTGGTTAATTTGGTGGTTT+GGG | - | chr4_4:50715783-50715802 | None:intergenic | 35.0% |
| ! | AAGTGGTTAATTTGGTGGTT+TGG | - | chr4_4:50715784-50715803 | None:intergenic | 35.0% |
| !!! | GACATGTATTTTGAAACGGA+GGG | - | chr4_4:50716480-50716499 | None:intergenic | 35.0% |
| TAACGGTCAAAATTGTGCAT+TGG | + | chr4_4:50716435-50716454 | Msa0686290:intron | 35.0% | |
| CATATGTGATATGGTTGACT+TGG | + | chr4_4:50716458-50716477 | Msa0686290:intron | 35.0% | |
| !!! | GACATGTATTTTGAAACGGA+GGG | + | chr4_4:50716480-50716499 | Msa0686290:intron | 35.0% |
| GGTTAAAGTCATAAAGCAAG+TGG | + | chr4_4:50716667-50716686 | Msa0686290:CDS | 35.0% | |
| AGGTTCTTTCCATCTGAATT+TGG | + | chr4_4:50717062-50717081 | Msa0686290:CDS | 35.0% | |
| CTTCATTCACTCCATGATTT+CGG | - | chr4_4:50717100-50717119 | None:intergenic | 35.0% | |
| ATACTAAGGCCAAATTTCGT+AGG | + | chr4_4:50717135-50717154 | Msa0686290:CDS | 35.0% | |
| TACTAAGGCCAAATTTCGTA+GGG | + | chr4_4:50717136-50717155 | Msa0686290:CDS | 35.0% | |
| !! | TAAGTTGTGATTGAGTTGGT+AGG | - | chr4_4:50717223-50717242 | None:intergenic | 35.0% |
| TTGTATGACAATGTGTTCGT+GGG | - | chr4_4:50717614-50717633 | None:intergenic | 35.0% | |
| ATTGTATGACAATGTGTTCG+TGG | - | chr4_4:50717615-50717634 | None:intergenic | 35.0% | |
| ACAATGACCTAGTATCTCTT+TGG | + | chr4_4:50717630-50717649 | Msa0686290:CDS | 35.0% | |
| CAATGACCTAGTATCTCTTT+GGG | + | chr4_4:50717631-50717650 | Msa0686290:CDS | 35.0% | |
| !! | CAAGTACTGAAGATGATTCA+AGG | + | chr4_4:50717701-50717720 | Msa0686290:CDS | 35.0% |
| ACACAAACACTCCTAAGATT+AGG | + | chr4_4:50717891-50717910 | Msa0686290:intron | 35.0% | |
| TACAAACATTGGACATGACA+AGG | - | chr4_4:50718031-50718050 | None:intergenic | 35.0% | |
| GTCACCTTATCCTGTAAATA+TGG | + | chr4_4:50718135-50718154 | Msa0686290:CDS | 35.0% | |
| ! | GCACCCCATTTTACTTAAAT+TGG | + | chr4_4:50718302-50718321 | Msa0686290:CDS | 35.0% |
| ! | ATTGGGTGTCAACGTAGTTT+TGG | + | chr4_4:50714767-50714786 | Msa0686290:CDS | 40.0% |
| TTTATGTGTGCGGTATGGTT+CGG | - | chr4_4:50715083-50715102 | None:intergenic | 40.0% | |
| AAAGATGGACACGTGATAAG+TGG | + | chr4_4:50715624-50715643 | Msa0686290:intron | 40.0% | |
| !!! | GGACATGTATTTTGAAACGG+AGG | - | chr4_4:50716479-50716498 | None:intergenic | 40.0% |
| ! | GTGCATTGGCATATGTGATA+TGG | + | chr4_4:50716449-50716468 | Msa0686290:intron | 40.0% |
| !!! | GGACATGTATTTTGAAACGG+AGG | + | chr4_4:50716479-50716498 | Msa0686290:intron | 40.0% |
| TTATGGGGTAGTACGTTGTT+TGG | + | chr4_4:50716574-50716593 | Msa0686290:intron | 40.0% | |
| TATATACGACCACCAGAGTT+TGG | + | chr4_4:50716646-50716665 | Msa0686290:CDS | 40.0% | |
| TGACTTTAACCAAACTCTGG+TGG | - | chr4_4:50716658-50716677 | None:intergenic | 40.0% | |
| GATCCTTGCTGCTATTAAAG+AGG | + | chr4_4:50716739-50716758 | Msa0686290:CDS | 40.0% | |
| AATGATGTGGACCGAAATCA+TGG | + | chr4_4:50717086-50717105 | Msa0686290:CDS | 40.0% | |
| CGAAATCATGGAGTGAATGA+AGG | + | chr4_4:50717098-50717117 | Msa0686290:CDS | 40.0% | |
| TCATGGAGTGAATGAAGGAA+TGG | + | chr4_4:50717103-50717122 | Msa0686290:CDS | 40.0% | |
| TTTGCAACCACATAGGTATG+GGG | - | chr4_4:50717182-50717201 | None:intergenic | 40.0% | |
| GTTTGCAACCACATAGGTAT+GGG | - | chr4_4:50717183-50717202 | None:intergenic | 40.0% | |
| AGTTTGCAACCACATAGGTA+TGG | - | chr4_4:50717184-50717203 | None:intergenic | 40.0% | |
| GAGAAAGTTTGCAACCACAT+AGG | - | chr4_4:50717189-50717208 | None:intergenic | 40.0% | |
| TCAGTTATTATCCTTGGGGA+TGG | + | chr4_4:50717266-50717285 | Msa0686290:CDS | 40.0% | |
| CAAGGTTCTTGGATCATCAA+TGG | - | chr4_4:50717567-50717586 | None:intergenic | 40.0% | |
| TCTTCTCCCAAAGAGATACT+AGG | - | chr4_4:50717640-50717659 | None:intergenic | 40.0% | |
| ATCTTCAGTACTTGCTTTCC+TGG | - | chr4_4:50717695-50717714 | None:intergenic | 40.0% | |
| TACAACACATGTCTCACACT+GGG | - | chr4_4:50717922-50717941 | None:intergenic | 40.0% | |
| ATACAACACATGTCTCACAC+TGG | - | chr4_4:50717923-50717942 | None:intergenic | 40.0% | |
| AGGCCCATATTTACAGGATA+AGG | - | chr4_4:50718142-50718161 | None:intergenic | 40.0% | |
| ATTGCAAGGCCCATATTTAC+AGG | - | chr4_4:50718148-50718167 | None:intergenic | 40.0% | |
| TATGAAATTGATCCCTCCAC+TGG | + | chr4_4:50718205-50718224 | Msa0686290:CDS | 40.0% | |
| !! | TTCTGAAGCTTCTATTCCAG+TGG | - | chr4_4:50718224-50718243 | None:intergenic | 40.0% |
| CACTTTGGATGAGTACTTTG+AGG | + | chr4_4:50718267-50718286 | Msa0686290:CDS | 40.0% | |
| ! | GTGGTTTGGGAGGAGATATT+GGG | - | chr4_4:50715770-50715789 | None:intergenic | 45.0% |
| ! | GGTTAATTTGGTGGTTTGGG+AGG | - | chr4_4:50715780-50715799 | None:intergenic | 45.0% |
| CCTTGCTGCTATTAAAGAGG+CGG | + | chr4_4:50716742-50716761 | Msa0686290:CDS | 45.0% | |
| CTTGCTGCTATTAAAGAGGC+GGG | + | chr4_4:50716743-50716762 | Msa0686290:CDS | 45.0% | |
| TAAAGAGGCGGGAAACGTTA+AGG | + | chr4_4:50716754-50716773 | Msa0686290:CDS | 45.0% | |
| CTCAATGGCCCTACGAAATT+TGG | - | chr4_4:50717147-50717166 | None:intergenic | 45.0% | |
| CAAATTTCGTAGGGCCATTG+AGG | + | chr4_4:50717145-50717164 | Msa0686290:CDS | 45.0% | |
| GGGAATTCCTTCATCCTCAA+TGG | - | chr4_4:50717162-50717181 | None:intergenic | 45.0% | |
| AGGAATTCCCCATACCTATG+TGG | + | chr4_4:50717172-50717191 | Msa0686290:CDS | 45.0% | |
| CTTTGGTATTTCCATCCCCA+AGG | - | chr4_4:50717280-50717299 | None:intergenic | 45.0% | |
| CTTGGGGATGGAAATACCAA+AGG | + | chr4_4:50717278-50717297 | Msa0686290:CDS | 45.0% | |
| TACTTATCACACACACCCTC+CGG | + | chr4_4:50717335-50717354 | Msa0686290:intron | 45.0% | |
| TATGACAATGTGTTCGTGGG+AGG | - | chr4_4:50717611-50717630 | None:intergenic | 45.0% | |
| TATGGGCCTTGCAATTTGTC+TGG | + | chr4_4:50718153-50718172 | Msa0686290:CDS | 45.0% | |
| ATCCAGCCAGACAAATTGCA+AGG | - | chr4_4:50718162-50718181 | None:intergenic | 45.0% | |
| TGTCTGGCTGGATATGTGAA+TGG | + | chr4_4:50718169-50718188 | Msa0686290:CDS | 45.0% | |
| GAAGCTTCTATTCCAGTGGA+GGG | - | chr4_4:50718220-50718239 | None:intergenic | 45.0% | |
| TGAAGCTTCTATTCCAGTGG+AGG | - | chr4_4:50718221-50718240 | None:intergenic | 45.0% | |
| !!! | ATTAATATAAATTTGTATTT+TGG | - | chr4_4:50715924-50715943 | None:intergenic | 5.0% |
| !!! | TAATATTTTTAATAATTTGA+TGG | + | chr4_4:50716945-50716964 | Msa0686290:intron | 5.0% |
| ! | GGTGGTTTGGGAGGAGATAT+TGG | - | chr4_4:50715771-50715790 | None:intergenic | 50.0% |
| GGAGTACATGTCAAGAGCTC+AGG | - | chr4_4:50716230-50716249 | None:intergenic | 50.0% | |
| CCGCCTCTTTAATAGCAGCA+AGG | - | chr4_4:50716745-50716764 | None:intergenic | 50.0% | |
| ACTGGGACACGCCTAATCTT+AGG | - | chr4_4:50717905-50717924 | None:intergenic | 50.0% | |
| CGTAGGGCCATTGAGGATGA+AGG | + | chr4_4:50717152-50717171 | Msa0686290:CDS | 55.0% | |
| GGCCTTGCAATTTGTCTGGC+TGG | + | chr4_4:50718157-50718176 | Msa0686290:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 50714732 | 50718592 | 50714732 | ID=Msa0686290;Name=Msa0686290 |
| chr4_4 | mRNA | 50714732 | 50718592 | 50714732 | ID=Msa0686290-mRNA-1;Parent=Msa0686290;Name=Msa0686290-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|1|0.8|1|1|1|5|232|286 |
| chr4_4 | exon | 50714732 | 50714788 | 50714732 | ID=Msa0686290-mRNA-1:exon:13005;Parent=Msa0686290-mRNA-1 |
| chr4_4 | exon | 50716641 | 50716775 | 50716641 | ID=Msa0686290-mRNA-1:exon:13006;Parent=Msa0686290-mRNA-1 |
| chr4_4 | exon | 50717062 | 50717299 | 50717062 | ID=Msa0686290-mRNA-1:exon:13007;Parent=Msa0686290-mRNA-1 |
| chr4_4 | exon | 50717519 | 50717722 | 50717519 | ID=Msa0686290-mRNA-1:exon:13008;Parent=Msa0686290-mRNA-1 |
| chr4_4 | exon | 50718134 | 50718592 | 50718134 | ID=Msa0686290-mRNA-1:exon:13009;Parent=Msa0686290-mRNA-1 |
| chr4_4 | CDS | 50714732 | 50714788 | 50714732 | ID=Msa0686290-mRNA-1:cds;Parent=Msa0686290-mRNA-1 |
| chr4_4 | CDS | 50716641 | 50716775 | 50716641 | ID=Msa0686290-mRNA-1:cds;Parent=Msa0686290-mRNA-1 |
| chr4_4 | CDS | 50717062 | 50717299 | 50717062 | ID=Msa0686290-mRNA-1:cds;Parent=Msa0686290-mRNA-1 |
| chr4_4 | CDS | 50717519 | 50717722 | 50717519 | ID=Msa0686290-mRNA-1:cds;Parent=Msa0686290-mRNA-1 |
| chr4_4 | CDS | 50718134 | 50718360 | 50718134 | ID=Msa0686290-mRNA-1:cds;Parent=Msa0686290-mRNA-1 |
| chr4_4 | three_prime_UTR | 50718361 | 50718592 | 50718361 | ID=Msa0686290-mRNA-1:three_prime_utr;Parent=Msa0686290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
