AlfalfaGEDB | Msa0686920

M. sativa cultivar zhongmu-4 / Msa0686920

KEGG: K14400
GO: GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005849 GO:0006139 GO:0006351 GO:0006353 GO:0006366 GO:0006369 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009909 GO:0009911 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0019899 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0046483 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:2000026 GO:2000241 GO:2000243
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0686920	XP_013450939.1	84.774	532	76	3	54	580	309	840	0.0	865

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0686920	sp\|Q0WPF2\|PCFS4_ARATH	44.630	540	242	15	64	580	303	808	1.22e-120	378

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0686920	A0A072U797	84.774	532	76	3	54	580	309	840	0.0	865

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TFs/TRs:

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Gene ID	Type	Classification
Msa0686920	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0686920	Msa1343010	0.856422	3.252332e-62	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0686920	MtrunA17_Chr6g0452881	84.774	532	76	3	54	580	309	840	0.0	865
Msa0686920	MtrunA17_Chr6g0452891	73.878	245	35	4	310	553	1	217	6.28e-119	350
Msa0686920	MtrunA17_Chr4g0037071	88.265	196	22	1	372	566	1	196	5.51e-110	328
Msa0686920	MtrunA17_Chr4g0037081	88.950	181	18	1	26	206	1	179	1.40e-106	318
Msa0686920	MtrunA17_Chr7g0265781	33.526	173	110	3	387	556	848	1018	3.55e-31	129
Msa0686920	MtrunA17_Chr1g0179281	34.104	173	107	4	387	554	839	1009	1.25e-29	124

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0686920	AT4G04885.1	44.630	540	242	15	64	580	303	808	1.24e-121	378
Msa0686920	AT1G66500.1	34.722	360	169	14	235	559	66	394	4.98e-47	170
Msa0686920	AT5G43620.1	36.333	300	117	12	304	559	119	388	2.03e-43	160
Msa0686920	AT2G36480.2	32.941	170	106	3	387	556	786	947	2.93e-24	108
Msa0686920	AT2G36480.1	32.941	170	106	3	387	556	786	947	2.93e-24	108

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Find 149 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGCTCTTTCAGTTTCC+TGG	0.223690	4_4:-51536178	Msa0686920:CDS
AAAGAAAGAAGATGAAGAGT+TGG	0.425274	4_4:-51535587	Msa0686920:CDS
AAAGTTGCTGGCAGAACTGG+TGG	0.562453	4_4:+51536612	None:intergenic
AAATTAGAATATCCAACAGT+TGG	0.545058	4_4:+51536060	None:intergenic
AAATTGGTACCACAATCTAA+TGG	0.432780	4_4:+51537278	None:intergenic
AACAAGTTGTGCATTTGGCA+GGG	0.544007	4_4:+51536233	None:intergenic
AACAGCTCTTTCAGTTTCCT+GGG	0.369668	4_4:-51536177	Msa0686920:CDS
AAGAGCTGTTTGCAATTCTT+TGG	0.300209	4_4:+51536190	None:intergenic
AATAGTACCAGTGTGAGTAA+TGG	0.608110	4_4:-51536483	Msa0686920:CDS
AATATAGGAGTTATGCTGGG+AGG	0.735215	4_4:+51536552	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATTGGTACCACAATCTAA+TGG	+	chr4_4:51534857-51534876	None:intergenic	30.0%
TCTTGCCATAAACGAATAAA+GGG	+	chr4_4:51534965-51534984	None:intergenic	30.0%
TTCTTGCCATAAACGAATAA+AGG	+	chr4_4:51534966-51534985	None:intergenic	30.0%
AGAAACCATTACTTCTACTA+TGG	+	chr4_4:51535390-51535409	None:intergenic	30.0%
TCAATATTAGAATTGAGACC+AGG	+	chr4_4:51535493-51535512	None:intergenic	30.0%
AAAGAAAGAAGATGAAGAGT+TGG	-	chr4_4:51536545-51536564	Msa0686920:CDS	30.0%
TCACTGTAAAACTTGTCAAA+AGG	+	chr4_4:51536618-51536637	None:intergenic	30.0%
TTATTCCATTAGGCGTATTA+AGG	+	chr4_4:51536677-51536696	None:intergenic	30.0%
TGCATTTAGCATGAATAATG+GGG	+	chr4_4:51536728-51536747	None:intergenic	30.0%
TCCATCACAAAATATTCAGA+CGG	+	chr4_4:51536765-51536784	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	51534821	51537333	51534821	ID=Msa0686920;Name=Msa0686920
chr4_4	mRNA	51534821	51537333	51534821	ID=Msa0686920-mRNA-1;Parent=Msa0686920;Name=Msa0686920-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0\|0.66\|0.25\|0.75\|0.33\|0.25\|4\|0\|580
chr4_4	exon	51537288	51537333	51537288	ID=Msa0686920-mRNA-1:exon:13414;Parent=Msa0686920-mRNA-1
chr4_4	exon	51536002	51537113	51536002	ID=Msa0686920-mRNA-1:exon:13413;Parent=Msa0686920-mRNA-1
chr4_4	exon	51535363	51535902	51535363	ID=Msa0686920-mRNA-1:exon:13412;Parent=Msa0686920-mRNA-1
chr4_4	exon	51534821	51534865	51534821	ID=Msa0686920-mRNA-1:exon:13411;Parent=Msa0686920-mRNA-1
chr4_4	CDS	51537288	51537333	51537288	ID=Msa0686920-mRNA-1:cds;Parent=Msa0686920-mRNA-1
chr4_4	CDS	51536002	51537113	51536002	ID=Msa0686920-mRNA-1:cds;Parent=Msa0686920-mRNA-1
chr4_4	CDS	51535363	51535902	51535363	ID=Msa0686920-mRNA-1:cds;Parent=Msa0686920-mRNA-1
chr4_4	CDS	51534821	51534865	51534821	ID=Msa0686920-mRNA-1:cds;Parent=Msa0686920-mRNA-1

Gene Sequence

>Msa0686920

TTGAGACCTTGTGAATTTCGCTTTAGATTGTGTCCATTAGATTGTGAATTTGAATTGCTTCTGATAAATCAAAAGATGCTTGCTGATGGTTTTCATCTTGGTGGGAATACTCGGAGCGAAATACCAAAGAATTCTTCATCAGTTATCTCAAACATTCCGCGAAAGAGATGTTTTGATGAGTTAAGCTATCTCAACAACGGACAACCGCGTCAAAATCCAAGAGCTCTAATTGATGCCTATGGTAGTGACAAAAGCCAAGAAACTTCTGGCAGTAAGCCTTTGTTAGTGGAGCGACCGGATAAAAACAGTATGGATAAGTTTATGACAACATCATGGCAGAATACTGAAGAGGAGGAGTTCGATTGGGAAGATATGAGTCCGACACTAGTAGACCATAGTAGAAGTAATGGTTTCTTGCAACCAACTATTGGTTTCTCATCAGAAAAGCCTGTTACCGTTGCAGCAAGTGCAACTACTTCAGCGTCAAGGGTGTTTCCTGGTCTCAATTCTAATATTGAGTACCGTCCACCAGTTCTGCCAGCAACTTTTGAAACGAGGCGCTCCATAAATGTGCATGCTCCGCGTCCTCCCAGCATAACTCCTATATTTCCATCGAAGAATCCTGTTAGGAATCCATTCGAATCAATAAATGCTAATAGTACCAGTGTGAGTAATGGTCTAATTAACAGACCTTTTCCTGTGCATGAACATGGTGTTGAGAACAACAATACCAGTAAAAGAAACCTGTATCAGTTGCCTAATCAGCTACCCGGTCTGATTTCATCTAACCCGCATAACAGTGGACAAACGCCACCATTCCGGTTTTTTCCATCTCAGGATCCAGCAGCGTCACAATTTACTTATAGCACTTCTTTGCCAGGACATTGTGCTGCTATGAGTAACCCCCTGCCAAATGCACAACTTGTTATGCCACTTCCTTCGCCAGGCCAAAGAATTGCAAACAGCTCTTTCAGTTTCCTGGGGGGAGCTTTGCCACCTTTACCTCCAGCTGGCCCACATGCTCTACCCCAGATTCTACCTAATCCCAATCCTGGTCCTTCTGTGTCAAGCCAACAGCCAACTGTTGGATATTCTAATTTGATTAGTTCACTCATGGCCCAAGGTGTTATGTCATTGGCTAATCAAGCCCCTGCGCTGGATTTTGTTGGCATTGAGTTTGATCCAAATCTTCTGAAGGTTCGTCATGAATCTGCAATCAGTGCCTTATATGGCGATCTTCCTAGACAGTGCACAACTTGTGGCCTCCGATTCAAGTCCCAAGATGAGCACAGAAGTCACATGGATTGGCATGTGACTAAGAACCGTATGTCTAAAATCCATAAGCAGAAGCCCTCTCGCAAGTGGTTTGTGAGTGAGACGATGTGGCTAGGTGCAGAGGCATTGGGAGCTGAATCAGCTCCAGGTTTTTTGCCAACCGAGACCACTGAGGAAAAGAAAGAAGATGAAGAGTTGGCAGTTCTTGCTGACGAGGACCAAAATACATGTGCATTATGTAGAGAACCTTTTGACAAGTTTTACAGTGATGAAACGGAGGATTGGATGTATAGAGGAGCTGTATACCTTAATACGCCTAATGGAATAACAACAGGCATGGACAGGTCGCAGTTAGGCCCCATTATTCATGCTAAATGCATATCTGAATCTACCCCGTCTGAATATTTTGTGATGGATGAAGGGGGCACCTATGAAGAAGGCAGCCAAAGAAAACGAATGCAGAGCTGA

Protein sequence

>Msa0686920

LRPCEFRFRLCPLDCEFELLLINQKMLADGFHLGGNTRSEIPKNSSSVISNIPRKRCFDELSYLNNGQPRQNPRALIDAYGSDKSQETSGSKPLLVERPDKNSMDKFMTTSWQNTEEEEFDWEDMSPTLVDHSRSNGFLQPTIGFSSEKPVTVAASATTSASRVFPGLNSNIEYRPPVLPATFETRRSINVHAPRPPSITPIFPSKNPVRNPFESINANSTSVSNGLINRPFPVHEHGVENNNTSKRNLYQLPNQLPGLISSNPHNSGQTPPFRFFPSQDPAASQFTYSTSLPGHCAAMSNPLPNAQLVMPLPSPGQRIANSSFSFLGGALPPLPPAGPHALPQILPNPNPGPSVSSQQPTVGYSNLISSLMAQGVMSLANQAPALDFVGIEFDPNLLKVRHESAISALYGDLPRQCTTCGLRFKSQDEHRSHMDWHVTKNRMSKIHKQKPSRKWFVSETMWLGAEALGAESAPGFLPTETTEEKKEDEELAVLADEDQNTCALCREPFDKFYSDETEDWMYRGAVYLNTPNGITTGMDRSQLGPIIHAKCISESTPSEYFVMDEGGTYEEGSQRKRMQS*