Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1343010 | XP_013450939.1 | 84.962 | 532 | 75 | 3 | 29 | 555 | 309 | 840 | 0.0 | 867 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1343010 | sp|Q0WPF2|PCFS4_ARATH | 44.815 | 540 | 241 | 15 | 39 | 555 | 303 | 808 | 6.43e-122 | 380 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1343010 | A0A072U797 | 84.962 | 532 | 75 | 3 | 29 | 555 | 309 | 840 | 0.0 | 867 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1343010 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0686920 | Msa1343010 | 0.856422 | 3.252332e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1343010 | MtrunA17_Chr6g0452881 | 84.962 | 532 | 75 | 3 | 29 | 555 | 309 | 840 | 0.0 | 867 |
| Msa1343010 | MtrunA17_Chr6g0452891 | 73.878 | 245 | 35 | 4 | 285 | 528 | 1 | 217 | 1.24e-119 | 352 |
| Msa1343010 | MtrunA17_Chr4g0037071 | 88.265 | 196 | 22 | 1 | 347 | 541 | 1 | 196 | 9.49e-111 | 330 |
| Msa1343010 | MtrunA17_Chr4g0037081 | 88.950 | 181 | 18 | 1 | 1 | 181 | 1 | 179 | 4.68e-107 | 318 |
| Msa1343010 | MtrunA17_Chr7g0265781 | 33.526 | 173 | 110 | 3 | 362 | 531 | 848 | 1018 | 1.06e-31 | 130 |
| Msa1343010 | MtrunA17_Chr1g0179281 | 34.104 | 173 | 107 | 4 | 362 | 529 | 839 | 1009 | 3.37e-30 | 126 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1343010 | AT4G04885.1 | 44.815 | 540 | 241 | 15 | 39 | 555 | 303 | 808 | 6.53e-123 | 380 |
| Msa1343010 | AT1G66500.1 | 34.722 | 360 | 169 | 14 | 210 | 534 | 66 | 394 | 2.19e-47 | 171 |
| Msa1343010 | AT5G43620.1 | 36.333 | 300 | 117 | 12 | 279 | 534 | 119 | 388 | 7.98e-44 | 161 |
| Msa1343010 | AT2G36480.2 | 32.941 | 170 | 106 | 3 | 362 | 531 | 786 | 947 | 9.19e-25 | 109 |
| Msa1343010 | AT2G36480.1 | 32.941 | 170 | 106 | 3 | 362 | 531 | 786 | 947 | 9.19e-25 | 109 |
Find 160 sgRNAs with CRISPR-Local
Find 227 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCAATGCACAATTTAAAT+TGG | 0.194558 | tig0006056:-283924 | None:intergenic |
| TACATAATGCACATGTATTT+TGG | 0.206485 | tig0006056:-282918 | None:intergenic |
| AAACAGCTCTTTCAGTTTCC+TGG | 0.223690 | tig0006056:+282285 | Msa1343010:CDS |
| TGCGAGAGGGCTTCTGCTTA+TGG | 0.258664 | tig0006056:-282762 | None:intergenic |
| ACGCGGAGCATGCACATTTA+TGG | 0.263678 | tig0006056:-281888 | None:intergenic |
| ATCCGAAACTAGTAAGTTAC+AGG | 0.281713 | tig0006056:-283698 | None:intergenic |
| TTATTCCATTAGGCGTATTA+AGG | 0.289551 | tig0006056:-283005 | None:intergenic |
| GCACTTGCTGCAACGGTAAC+AGG | 0.291227 | tig0006056:-281773 | None:intergenic |
| TGACGAACCTTCAGAAGATT+TGG | 0.298615 | tig0006056:-282607 | None:intergenic |
| AAGAGCTGTTTGCAATTCTT+TGG | 0.300209 | tig0006056:-282273 | None:intergenic |
| GCTTACTGCCAGAAGTTTCT+TGG | 0.305569 | tig0006056:-281580 | None:intergenic |
| AGGCTTACAGCGAACATAAA+TGG | 0.309826 | tig0006056:-283678 | None:intergenic |
| TCTTTGGCTGCCTTCTTCAT+AGG | 0.310252 | tig0006056:-283627 | None:intergenic |
| ATGCCTGTTGTTATTCCATT+AGG | 0.318753 | tig0006056:-283015 | None:intergenic |
| AGAAACCATTACTTCTACTA+TGG | 0.330076 | tig0006056:-281718 | None:intergenic |
| ATAACTGATGAAGAATTCTT+TGG | 0.332236 | tig0006056:-281449 | None:intergenic |
| ATGCATTTAGCATGAATAAT+GGG | 0.333257 | tig0006056:-283057 | None:intergenic |
| GATTCGAATGGATTCCTAAC+AGG | 0.333615 | tig0006056:-281947 | None:intergenic |
| TCTAGGAAGATCGCCATATA+AGG | 0.342211 | tig0006056:-282647 | None:intergenic |
| AGCCTGTAACTTACTAGTTT+CGG | 0.346002 | tig0006056:+283696 | Msa1343010:three_prime_UTR |
| TCTGCAATCAGTGCCTTATA+TGG | 0.351640 | tig0006056:+282634 | Msa1343010:CDS |
| TACATGTATGTACATAATTT+AGG | 0.354587 | tig0006056:-283742 | None:intergenic |
| GGTTTCTTGCAACCAACTAT+TGG | 0.360158 | tig0006056:+281734 | Msa1343010:CDS |
| TATGCATTTAGCATGAATAA+TGG | 0.367648 | tig0006056:-283058 | None:intergenic |
| GGTAGAGCATGTGGGCCAGC+TGG | 0.367975 | tig0006056:-282331 | None:intergenic |
| AACAGCTCTTTCAGTTTCCT+GGG | 0.369668 | tig0006056:+282286 | Msa1343010:CDS |
| TCAGCGTCAAGGGTGTTTCC+TGG | 0.373151 | tig0006056:+281803 | Msa1343010:CDS |
| TGGCAGTAAGCCTTTGTTAG+TGG | 0.376982 | tig0006056:+281592 | Msa1343010:CDS |
| TCAAAAGTTGCTGGCAGAAC+TGG | 0.381258 | tig0006056:-281854 | None:intergenic |
| GTAAGGTACTGAAAATTTGC+AGG | 0.382947 | tig0006056:-283819 | None:intergenic |
| TAGGCATCAATTAGAGCTCT+TGG | 0.388106 | tig0006056:-281542 | None:intergenic |
| TGTGACTTCTGTGCTCATCT+TGG | 0.389046 | tig0006056:-282702 | None:intergenic |
| GGCATAACAAGTTGTGCATT+TGG | 0.389349 | tig0006056:-282235 | None:intergenic |
| GCTGATTAGGCAACTGATAC+AGG | 0.398235 | tig0006056:-282069 | None:intergenic |
| TAACAAGTTGTGCATTTGGC+AGG | 0.415660 | tig0006056:-282231 | None:intergenic |
| GACAAAAGCCAAGAAACTTC+TGG | 0.416293 | tig0006056:+281572 | Msa1343010:CDS |
| TTGCCACCTTTACCTCCAGC+TGG | 0.419948 | tig0006056:+282316 | Msa1343010:CDS |
| GTGACTTCTGTGCTCATCTT+GGG | 0.422924 | tig0006056:-282701 | None:intergenic |
| GATTGGGATTAGGTAGAATC+TGG | 0.424134 | tig0006056:-282354 | None:intergenic |
| AAAGAAAGAAGATGAAGAGT+TGG | 0.425274 | tig0006056:+282876 | Msa1343010:CDS |
| GGATTCTTCGATGGAAATAT+AGG | 0.431337 | tig0006056:-281926 | None:intergenic |
| CTGTTTGCAATTCTTTGGCC+TGG | 0.431824 | tig0006056:-282268 | None:intergenic |
| GAAGGACCAGGATTGGGATT+AGG | 0.436097 | tig0006056:-282364 | None:intergenic |
| GTGGACAAACGCCACCATTC+CGG | 0.438771 | tig0006056:+282125 | Msa1343010:CDS |
| GTGGCTAGGTGCAGAGGCAT+TGG | 0.444504 | tig0006056:+282807 | Msa1343010:CDS |
| TTCATCTTGGTGGGAATACT+CGG | 0.444524 | tig0006056:+281417 | Msa1343010:CDS |
| GACACAGAAGGACCAGGATT+GGG | 0.445177 | tig0006056:-282370 | None:intergenic |
| GCGTTTGTCCACTGTTATGC+GGG | 0.451893 | tig0006056:-282114 | None:intergenic |
| CTAGCAGAAATAATTATAGA+AGG | 0.452926 | tig0006056:-283985 | None:intergenic |
| GTATACCTTAATACGCCTAA+TGG | 0.453857 | tig0006056:+283000 | Msa1343010:CDS |
| CGCCTCGTTTCAAAAGTTGC+TGG | 0.461501 | tig0006056:-281863 | None:intergenic |
| TGGAAATATAGGAGTTATGC+TGG | 0.461860 | tig0006056:-281915 | None:intergenic |
| TAAGTAAATTGTGACGCTGC+TGG | 0.462016 | tig0006056:-282166 | None:intergenic |
| TTCCATCGAAGAATCCTGTT+AGG | 0.463431 | tig0006056:+281933 | Msa1343010:CDS |
| GCTCATCTTGGGACTTGAAT+CGG | 0.465641 | tig0006056:-282690 | None:intergenic |
| CTTTGGCCTGGCGAAGGAAG+TGG | 0.465990 | tig0006056:-282256 | None:intergenic |
| TTGGGAGCTGAATCAGCTCC+AGG | 0.466055 | tig0006056:+282826 | Msa1343010:CDS |
| TCACTGTAAAACTTGTCAAA+AGG | 0.474303 | tig0006056:-282946 | None:intergenic |
| GCCTTTGTTAGTGGAGCGAC+CGG | 0.474907 | tig0006056:+281601 | Msa1343010:CDS |
| GGCCCAAGGTGTTATGTCAT+TGG | 0.480316 | tig0006056:+282441 | Msa1343010:CDS |
| CCATGTTCATGCACAGGAAA+AGG | 0.480750 | tig0006056:-282016 | None:intergenic |
| TCTGATGAGAAACCAATAGT+TGG | 0.483041 | tig0006056:-281746 | None:intergenic |
| ACTTATAGCACTTCTTTGCC+AGG | 0.484285 | tig0006056:+282184 | Msa1343010:CDS |
| TGTGGGCCAGCTGGAGGTAA+AGG | 0.486896 | tig0006056:-282322 | None:intergenic |
| ACGCCTAATGGAATAACAAC+AGG | 0.488809 | tig0006056:+283012 | Msa1343010:CDS |
| TTAGCATTTATTGATTCGAA+TGG | 0.491940 | tig0006056:-281959 | None:intergenic |
| ATAGATTTAGTTACCAGCGC+AGG | 0.494952 | tig0006056:-282475 | None:intergenic |
| AAGAAATGACAATAAATGTA+AGG | 0.496413 | tig0006056:-283836 | None:intergenic |
| TGGCTAGGTGCAGAGGCATT+GGG | 0.497013 | tig0006056:+282808 | Msa1343010:CDS |
| TGACACAGAAGGACCAGGAT+TGG | 0.501011 | tig0006056:-282371 | None:intergenic |
| ATCAGACCGGGTAGCTGATT+AGG | 0.502180 | tig0006056:-282082 | None:intergenic |
| CTGAAGAGGAGGAGTTCGAT+TGG | 0.502985 | tig0006056:+281669 | Msa1343010:CDS |
| GGCATGGACAGGTCGCAGTT+AGG | 0.505187 | tig0006056:+283033 | Msa1343010:CDS |
| CCACAAGTTGTGCACTGTCT+AGG | 0.505428 | tig0006056:-282664 | None:intergenic |
| TCATCAAAACATCTCTTTCG+CGG | 0.506613 | tig0006056:-281482 | None:intergenic |
| ATTCAAACAGTAAGTGCTCA+TGG | 0.508120 | tig0006056:-283893 | None:intergenic |
| TAATTTGATTAGTTCACTCA+TGG | 0.508846 | tig0006056:+282420 | Msa1343010:CDS |
| AGAGCTCTAATTGATGCCTA+TGG | 0.514260 | tig0006056:+281545 | Msa1343010:CDS |
| AGCCAATGACATAACACCTT+GGG | 0.518658 | tig0006056:-282443 | None:intergenic |
| ACAGTGATGAAACGGAGGAT+TGG | 0.518817 | tig0006056:+282962 | Msa1343010:CDS |
| ACGGAGGATTGGATGTATAG+AGG | 0.522404 | tig0006056:+282973 | Msa1343010:CDS |
| CCATCACAAAATATTCAGAC+GGG | 0.528028 | tig0006056:-283092 | None:intergenic |
| AGCACAGAAGTCACATGGAT+TGG | 0.529243 | tig0006056:+282710 | Msa1343010:CDS |
| TGAAGAGGAGGAGTTCGATT+GGG | 0.536389 | tig0006056:+281670 | Msa1343010:CDS |
| CTCATAGCAGCACAATGTCC+TGG | 0.542263 | tig0006056:-282202 | None:intergenic |
| GGCTAATCAAGCCCCTGCGC+TGG | 0.542720 | tig0006056:+282462 | Msa1343010:CDS |
| AACAAGTTGTGCATTTGGCA+GGG | 0.544007 | tig0006056:-282230 | None:intergenic |
| AATATCCAACAGTTGGCTGT+TGG | 0.544187 | tig0006056:-282396 | None:intergenic |
| AAATTAGAATATCCAACAGT+TGG | 0.545058 | tig0006056:-282403 | None:intergenic |
| TGCAACTACTTCAGCGTCAA+GGG | 0.545212 | tig0006056:+281793 | Msa1343010:CDS |
| AGTTTCGGATCAATGTATGC+AGG | 0.545969 | tig0006056:+283711 | Msa1343010:three_prime_UTR |
| GAATAACAACAGGCATGGAC+AGG | 0.551052 | tig0006056:+283022 | Msa1343010:CDS |
| GCAATTCTTTGGCCTGGCGA+AGG | 0.555122 | tig0006056:-282262 | None:intergenic |
| GTTATGCCACTTCCTTCGCC+AGG | 0.555543 | tig0006056:+282250 | Msa1343010:CDS |
| TAGATTTAGTTACCAGCGCA+GGG | 0.556762 | tig0006056:-282474 | None:intergenic |
| ACAAGTTGTGCATTTGGCAG+GGG | 0.557390 | tig0006056:-282229 | None:intergenic |
| GGCGTTTGTCCACTGTTATG+CGG | 0.558202 | tig0006056:-282115 | None:intergenic |
| GTGCAACTACTTCAGCGTCA+AGG | 0.559076 | tig0006056:+281792 | Msa1343010:CDS |
| AGCAGAAGCCCTCTCGCAAG+TGG | 0.560089 | tig0006056:+282767 | Msa1343010:CDS |
| AGAATCTGGGGTAGAGCATG+TGG | 0.560420 | tig0006056:-282340 | None:intergenic |
| AAAGTTGCTGGCAGAACTGG+TGG | 0.562453 | tig0006056:-281851 | None:intergenic |
| TTCCTAACAGGATTCTTCGA+TGG | 0.563320 | tig0006056:-281935 | None:intergenic |
| CAAGTTGTGCATTTGGCAGG+GGG | 0.563383 | tig0006056:-282228 | None:intergenic |
| AGTAGTTGCACTTGCTGCAA+CGG | 0.563425 | tig0006056:-281780 | None:intergenic |
| AATCAAAAGATGCTTGCTGA+TGG | 0.564765 | tig0006056:+281392 | None:intergenic |
| ATTCTACCTAATCCCAATCC+TGG | 0.565745 | tig0006056:+282358 | Msa1343010:CDS |
| TGGCTTGACACAGAAGGACC+AGG | 0.566253 | tig0006056:-282376 | None:intergenic |
| CTACTATGGTCTACTAGTGT+CGG | 0.567210 | tig0006056:-281704 | None:intergenic |
| GGCTGTTGGCTTGACACAGA+AGG | 0.567803 | tig0006056:-282382 | None:intergenic |
| TCCATCACAAAATATTCAGA+CGG | 0.568109 | tig0006056:-283093 | None:intergenic |
| TCAAGCCAACAGCCAACTGT+TGG | 0.568482 | tig0006056:+282391 | Msa1343010:CDS |
| ATAAGATATGCATGTTACAC+AGG | 0.569170 | tig0006056:-283773 | None:intergenic |
| GACGCTGCTGGATCCTGAGA+TGG | 0.569203 | tig0006056:-282154 | None:intergenic |
| CGGGTTAGATGAAATCAGAC+CGG | 0.570016 | tig0006056:-282095 | None:intergenic |
| GTAGACCATAGTAGAAGTAA+TGG | 0.573238 | tig0006056:+281713 | Msa1343010:CDS |
| ATTAGTTCACTCATGGCCCA+AGG | 0.574805 | tig0006056:+282427 | Msa1343010:CDS |
| GTTTGATCCAAATCTTCTGA+AGG | 0.578645 | tig0006056:+282600 | Msa1343010:CDS |
| GGAGTTATGCTGGGAGGACG+CGG | 0.578950 | tig0006056:-281905 | None:intergenic |
| CAGCTCTTTCAGTTTCCTGG+GGG | 0.579833 | tig0006056:+282288 | Msa1343010:CDS |
| TCCGGTCGCTCCACTAACAA+AGG | 0.582967 | tig0006056:-281602 | None:intergenic |
| ATGCAGGGCACCTATGAAGA+AGG | 0.583079 | tig0006056:+283617 | Msa1343010:intron |
| ACAGCTCTTTCAGTTTCCTG+GGG | 0.586349 | tig0006056:+282287 | Msa1343010:CDS |
| CCTAGACAGTGCACAACTTG+TGG | 0.586792 | tig0006056:+282664 | Msa1343010:CDS |
| TCAACACCATGTTCATGCAC+AGG | 0.588454 | tig0006056:-282022 | None:intergenic |
| GTTGGCAGTTCTTGCTGACG+AGG | 0.590256 | tig0006056:+282894 | Msa1343010:CDS |
| GACGATGTGGCTAGGTGCAG+AGG | 0.597079 | tig0006056:+282801 | Msa1343010:CDS |
| GTGAGTGAGACGATGTGGCT+AGG | 0.601495 | tig0006056:+282793 | Msa1343010:CDS |
| TAATGGAATAACAACAGGCA+TGG | 0.604751 | tig0006056:+283017 | Msa1343010:CDS |
| AATAGTACCAGTGTGAGTAA+TGG | 0.608110 | tig0006056:+281980 | Msa1343010:CDS |
| AGAGCATGTGGGCCAGCTGG+AGG | 0.611285 | tig0006056:-282328 | None:intergenic |
| GGAAATATAGGAGTTATGCT+GGG | 0.611878 | tig0006056:-281914 | None:intergenic |
| AATTAGACCATTACTCACAC+TGG | 0.612003 | tig0006056:-281987 | None:intergenic |
| CTCACAAACCACTTGCGAGA+GGG | 0.612344 | tig0006056:-282775 | None:intergenic |
| GGGTTAGATGAAATCAGACC+GGG | 0.617202 | tig0006056:-282094 | None:intergenic |
| ATTGGGATTAGGTAGAATCT+GGG | 0.617573 | tig0006056:-282353 | None:intergenic |
| ATGTACATAATTTAGGCAAG+AGG | 0.620972 | tig0006056:-283735 | None:intergenic |
| TAGCCAATGACATAACACCT+TGG | 0.621234 | tig0006056:-282444 | None:intergenic |
| TGCATTTAGCATGAATAATG+GGG | 0.625810 | tig0006056:-283056 | None:intergenic |
| ATGGCAGAATACTGAAGAGG+AGG | 0.632607 | tig0006056:+281658 | Msa1343010:CDS |
| ACTCACAAACCACTTGCGAG+AGG | 0.632815 | tig0006056:-282776 | None:intergenic |
| AGCTCTTTCAGTTTCCTGGG+GGG | 0.634048 | tig0006056:+282289 | Msa1343010:CDS |
| GTTTCGGATCAATGTATGCA+GGG | 0.634888 | tig0006056:+283712 | Msa1343010:three_prime_UTR |
| AGATGAGCACAGAAGTCACA+TGG | 0.637659 | tig0006056:+282705 | Msa1343010:CDS |
| GGGCCAGCTGGAGGTAAAGG+TGG | 0.639466 | tig0006056:-282319 | None:intergenic |
| CAGTTGCCTAATCAGCTACC+CGG | 0.639744 | tig0006056:+282076 | Msa1343010:CDS |
| ATAAGTTTATGACAACATCA+TGG | 0.644139 | tig0006056:+281639 | Msa1343010:CDS |
| CATCTTGGGACTTGAATCGG+AGG | 0.650361 | tig0006056:-282687 | None:intergenic |
| TCAATATTAGAATTGAGACC+AGG | 0.653967 | tig0006056:-281821 | None:intergenic |
| ATCATGGCAGAATACTGAAG+AGG | 0.665757 | tig0006056:+281655 | Msa1343010:CDS |
| AGATTTAGTTACCAGCGCAG+GGG | 0.672730 | tig0006056:-282473 | None:intergenic |
| TCATCTAACCCGCATAACAG+TGG | 0.680332 | tig0006056:+282106 | Msa1343010:CDS |
| GAATCTGGGGTAGAGCATGT+GGG | 0.680646 | tig0006056:-282339 | None:intergenic |
| CATCACAAAATATTCAGACG+GGG | 0.686925 | tig0006056:-283091 | None:intergenic |
| TTGGGATTAGGTAGAATCTG+GGG | 0.686989 | tig0006056:-282352 | None:intergenic |
| GCAGCCAAAGAAAACGAATG+CGG | 0.688645 | tig0006056:+283639 | Msa1343010:CDS |
| TTGCTGGCAGAACTGGTGGA+CGG | 0.691595 | tig0006056:-281847 | None:intergenic |
| GAGTTAAGCTATCTCAACAA+CGG | 0.702080 | tig0006056:+281503 | Msa1343010:CDS |
| AATATAGGAGTTATGCTGGG+AGG | 0.735215 | tig0006056:-281911 | None:intergenic |
| GGTTTGTGAGTGAGACGATG+TGG | 0.738502 | tig0006056:+282788 | Msa1343010:CDS |
| TTTGCCAACCGAGACCACTG+AGG | 0.774441 | tig0006056:+282852 | Msa1343010:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAATATAATTGCAAAAT+TGG | - | tig0006056:282554-282573 | None:intergenic | 10.0% |
| !! | AATTATATTATTATGTTTGT+AGG | + | tig0006056:282561-282580 | Msa1343010:intron | 10.0% |
| !! | AGGATATAAAAATTAAACTA+AGG | - | tig0006056:282501-282520 | None:intergenic | 15.0% |
| !!! | ACATTTTATTTTAATGTCAT+TGG | + | tig0006056:284008-284027 | Msa1343010:three_prime_UTR | 15.0% |
| !! | AATGAATTAAAGACATAAAG+TGG | - | tig0006056:283176-283195 | None:intergenic | 20.0% |
| !! | AAATATATGTGCCTATTTAA+TGG | + | tig0006056:283495-283514 | Msa1343010:intron | 20.0% |
| !! | TACATGTATGTACATAATTT+AGG | - | tig0006056:283745-283764 | None:intergenic | 20.0% |
| !! | AAGAAATGACAATAAATGTA+AGG | - | tig0006056:283839-283858 | None:intergenic | 20.0% |
| !!! | CATTTCTTTTACTTCATTTT+TGG | + | tig0006056:283851-283870 | Msa1343010:three_prime_UTR | 20.0% |
| ! | ATAACTGATGAAGAATTCTT+TGG | - | tig0006056:281452-281471 | None:intergenic | 25.0% |
| !!! | TTATCCATACTGTTTTTATC+CGG | - | tig0006056:281623-281642 | None:intergenic | 25.0% |
| ! | ATAAGTTTATGACAACATCA+TGG | + | tig0006056:281639-281658 | Msa1343010:CDS | 25.0% |
| !!! | TTAGCATTTATTGATTCGAA+TGG | - | tig0006056:281962-281981 | None:intergenic | 25.0% |
| ! | AAATTAGAATATCCAACAGT+TGG | - | tig0006056:282406-282425 | None:intergenic | 25.0% |
| !! | TAATTTGATTAGTTCACTCA+TGG | + | tig0006056:282420-282439 | Msa1343010:CDS | 25.0% |
| ! | AACAAAAATGGAAGGAAAAT+AGG | - | tig0006056:282521-282540 | None:intergenic | 25.0% |
| !! | TTATGTTTGTAGGATTTTGT+TGG | + | tig0006056:282571-282590 | Msa1343010:intron | 25.0% |
| !! | TACATAATGCACATGTATTT+TGG | - | tig0006056:282921-282940 | None:intergenic | 25.0% |
| ! | ATGCATTTAGCATGAATAAT+GGG | - | tig0006056:283060-283079 | None:intergenic | 25.0% |
| ! | TATGCATTTAGCATGAATAA+TGG | - | tig0006056:283061-283080 | None:intergenic | 25.0% |
| !!! | AATATTTTGTGATGGATGAA+GGG | + | tig0006056:283100-283119 | Msa1343010:CDS | 25.0% |
| !!! | TTATGTTTTTTCTTTCCCAT+TGG | + | tig0006056:283253-283272 | Msa1343010:intron | 25.0% |
| !! | CAAAAACAAGTTTTACCAAT+GGG | - | tig0006056:283271-283290 | None:intergenic | 25.0% |
| !! | TCAAAAACAAGTTTTACCAA+TGG | - | tig0006056:283272-283291 | None:intergenic | 25.0% |
| !!! | ATTGGTAAAACTTGTTTTTG+AGG | + | tig0006056:283271-283290 | Msa1343010:intron | 25.0% |
| !!! | TTGGTAAAACTTGTTTTTGA+GGG | + | tig0006056:283272-283291 | Msa1343010:intron | 25.0% |
| ! | ATAATAACATCATGTGAAGT+TGG | - | tig0006056:283524-283543 | None:intergenic | 25.0% |
| ! | CATGATGTTATTATTTCAAG+TGG | + | tig0006056:283530-283549 | Msa1343010:intron | 25.0% |
| ! | CATCAATGCACAATTTAAAT+TGG | - | tig0006056:283927-283946 | None:intergenic | 25.0% |
| ! | CTAGCAGAAATAATTATAGA+AGG | - | tig0006056:283988-284007 | None:intergenic | 25.0% |
| AGAAACCATTACTTCTACTA+TGG | - | tig0006056:281721-281740 | None:intergenic | 30.0% | |
| TCAATATTAGAATTGAGACC+AGG | - | tig0006056:281824-281843 | None:intergenic | 30.0% | |
| CACAATCAAACAAAAATGGA+AGG | - | tig0006056:282529-282548 | None:intergenic | 30.0% | |
| GGTACACAATCAAACAAAAA+TGG | - | tig0006056:282533-282552 | None:intergenic | 30.0% | |
| ! | GCTTATGGATTTTAGACATA+CGG | - | tig0006056:282750-282769 | None:intergenic | 30.0% |
| AAAGAAAGAAGATGAAGAGT+TGG | + | tig0006056:282876-282895 | Msa1343010:CDS | 30.0% | |
| TCACTGTAAAACTTGTCAAA+AGG | - | tig0006056:282949-282968 | None:intergenic | 30.0% | |
| ! | CAAGTTTTACAGTGATGAAA+CGG | + | tig0006056:282954-282973 | Msa1343010:CDS | 30.0% |
| TTATTCCATTAGGCGTATTA+AGG | - | tig0006056:283008-283027 | None:intergenic | 30.0% | |
| TGCATTTAGCATGAATAATG+GGG | - | tig0006056:283059-283078 | None:intergenic | 30.0% | |
| TCCATCACAAAATATTCAGA+CGG | - | tig0006056:283096-283115 | None:intergenic | 30.0% | |
| !!! | GAATATTTTGTGATGGATGA+AGG | + | tig0006056:283099-283118 | Msa1343010:CDS | 30.0% |
| !!! | ATATTTTGTGATGGATGAAG+GGG | + | tig0006056:283101-283120 | Msa1343010:CDS | 30.0% |
| ! | ATTGACTGACACATGTTTTT+GGG | + | tig0006056:283193-283212 | Msa1343010:intron | 30.0% |
| AAGTCACCAAAAGAACAATA+TGG | - | tig0006056:283318-283337 | None:intergenic | 30.0% | |
| ACATGCGATTTACGATATAA+TGG | - | tig0006056:283361-283380 | None:intergenic | 30.0% | |
| ! | ATATCGTAAATCGCATGTTT+TGG | + | tig0006056:283363-283382 | Msa1343010:intron | 30.0% |
| AAAAAACAGGACATTGCATT+TGG | - | tig0006056:283396-283415 | None:intergenic | 30.0% | |
| ! | TTAAAATAGCTTGCAACACT+AGG | + | tig0006056:283457-283476 | Msa1343010:intron | 30.0% |
| ATGTACATAATTTAGGCAAG+AGG | - | tig0006056:283738-283757 | None:intergenic | 30.0% | |
| ATAAGATATGCATGTTACAC+AGG | - | tig0006056:283776-283795 | None:intergenic | 30.0% | |
| !!! | TCTTTTACTTCATTTTTGGC+AGG | + | tig0006056:283855-283874 | Msa1343010:three_prime_UTR | 30.0% |
| TCATCAAAACATCTCTTTCG+CGG | - | tig0006056:281485-281504 | None:intergenic | 35.0% | |
| GAGTTAAGCTATCTCAACAA+CGG | + | tig0006056:281503-281522 | Msa1343010:CDS | 35.0% | |
| GTAGACCATAGTAGAAGTAA+TGG | + | tig0006056:281713-281732 | Msa1343010:CDS | 35.0% | |
| TCTGATGAGAAACCAATAGT+TGG | - | tig0006056:281749-281768 | None:intergenic | 35.0% | |
| GGAAATATAGGAGTTATGCT+GGG | - | tig0006056:281917-281936 | None:intergenic | 35.0% | |
| TGGAAATATAGGAGTTATGC+TGG | - | tig0006056:281918-281937 | None:intergenic | 35.0% | |
| GGATTCTTCGATGGAAATAT+AGG | - | tig0006056:281929-281948 | None:intergenic | 35.0% | |
| AATAGTACCAGTGTGAGTAA+TGG | + | tig0006056:281980-281999 | Msa1343010:CDS | 35.0% | |
| AATTAGACCATTACTCACAC+TGG | - | tig0006056:281990-282009 | None:intergenic | 35.0% | |
| ! | CTGATACAGGTTTCTTTTAC+TGG | - | tig0006056:282059-282078 | None:intergenic | 35.0% |
| AAGAGCTGTTTGCAATTCTT+TGG | - | tig0006056:282276-282295 | None:intergenic | 35.0% | |
| ATTGGGATTAGGTAGAATCT+GGG | - | tig0006056:282356-282375 | None:intergenic | 35.0% | |
| GTTTGATCCAAATCTTCTGA+AGG | + | tig0006056:282600-282619 | Msa1343010:CDS | 35.0% | |
| ! | ATCTTCTTTCTTTTCCTCAG+TGG | - | tig0006056:282869-282888 | None:intergenic | 35.0% |
| GTATACCTTAATACGCCTAA+TGG | + | tig0006056:283000-283019 | Msa1343010:CDS | 35.0% | |
| ! | ATGCCTGTTGTTATTCCATT+AGG | - | tig0006056:283018-283037 | None:intergenic | 35.0% |
| TAATGGAATAACAACAGGCA+TGG | + | tig0006056:283017-283036 | Msa1343010:CDS | 35.0% | |
| CATCACAAAATATTCAGACG+GGG | - | tig0006056:283094-283113 | None:intergenic | 35.0% | |
| CCATCACAAAATATTCAGAC+GGG | - | tig0006056:283095-283114 | None:intergenic | 35.0% | |
| !! | CATTGACTGACACATGTTTT+TGG | + | tig0006056:283192-283211 | Msa1343010:intron | 35.0% |
| !! | TTGACTGACACATGTTTTTG+GGG | + | tig0006056:283194-283213 | Msa1343010:intron | 35.0% |
| ACATAGAAGACGGAAAAAAC+AGG | - | tig0006056:283409-283428 | None:intergenic | 35.0% | |
| TATGTCATGTCTTGCAAATG+AGG | + | tig0006056:283424-283443 | Msa1343010:intron | 35.0% | |
| TCTTGCAAATGAGGATATCA+TGG | + | tig0006056:283433-283452 | Msa1343010:intron | 35.0% | |
| ! | TTGTTTTCCTCTTTGTATGC+AGG | + | tig0006056:283601-283620 | Msa1343010:intron | 35.0% |
| ! | TGTTTTCCTCTTTGTATGCA+GGG | + | tig0006056:283602-283621 | Msa1343010:intron | 35.0% |
| ! | AGCCTGTAACTTACTAGTTT+CGG | + | tig0006056:283696-283715 | Msa1343010:three_prime_UTR | 35.0% |
| ATCCGAAACTAGTAAGTTAC+AGG | - | tig0006056:283701-283720 | None:intergenic | 35.0% | |
| !! | GTAAGGTACTGAAAATTTGC+AGG | - | tig0006056:283822-283841 | None:intergenic | 35.0% |
| !!! | CTTCATTTTTGGCAGGAATT+TGG | + | tig0006056:283862-283881 | Msa1343010:three_prime_UTR | 35.0% |
| ATTCAAACAGTAAGTGCTCA+TGG | - | tig0006056:283896-283915 | None:intergenic | 35.0% | |
| ! | CTTGCTGATGGTTTTCATCT+TGG | + | tig0006056:281404-281423 | Msa1343010:CDS | 40.0% |
| ! | CTGATGGTTTTCATCTTGGT+GGG | + | tig0006056:281408-281427 | Msa1343010:CDS | 40.0% |
| TTCATCTTGGTGGGAATACT+CGG | + | tig0006056:281417-281436 | Msa1343010:CDS | 40.0% | |
| TAGGCATCAATTAGAGCTCT+TGG | - | tig0006056:281545-281564 | None:intergenic | 40.0% | |
| ! | AGAGCTCTAATTGATGCCTA+TGG | + | tig0006056:281545-281564 | Msa1343010:CDS | 40.0% |
| !! | TTGGCTTTTGTCACTACCAT+AGG | - | tig0006056:281564-281583 | None:intergenic | 40.0% |
| GACAAAAGCCAAGAAACTTC+TGG | + | tig0006056:281572-281591 | Msa1343010:CDS | 40.0% | |
| ATCATGGCAGAATACTGAAG+AGG | + | tig0006056:281655-281674 | Msa1343010:CDS | 40.0% | |
| CTACTATGGTCTACTAGTGT+CGG | - | tig0006056:281707-281726 | None:intergenic | 40.0% | |
| GGTTTCTTGCAACCAACTAT+TGG | + | tig0006056:281734-281753 | Msa1343010:CDS | 40.0% | |
| AATATAGGAGTTATGCTGGG+AGG | - | tig0006056:281914-281933 | None:intergenic | 40.0% | |
| TTCCATCGAAGAATCCTGTT+AGG | + | tig0006056:281933-281952 | Msa1343010:CDS | 40.0% | |
| TTCCTAACAGGATTCTTCGA+TGG | - | tig0006056:281938-281957 | None:intergenic | 40.0% | |
| ! | GATTCGAATGGATTCCTAAC+AGG | - | tig0006056:281950-281969 | None:intergenic | 40.0% |
| TGAGATGGAAAAAACCGGAA+TGG | - | tig0006056:282142-282161 | None:intergenic | 40.0% | |
| !!! | ATTCCGGTTTTTTCCATCTC+AGG | + | tig0006056:282141-282160 | Msa1343010:CDS | 40.0% |
| GATCCTGAGATGGAAAAAAC+CGG | - | tig0006056:282147-282166 | None:intergenic | 40.0% | |
| TAAGTAAATTGTGACGCTGC+TGG | - | tig0006056:282169-282188 | None:intergenic | 40.0% | |
| ACTTATAGCACTTCTTTGCC+AGG | + | tig0006056:282184-282203 | Msa1343010:CDS | 40.0% | |
| AACAAGTTGTGCATTTGGCA+GGG | - | tig0006056:282233-282252 | None:intergenic | 40.0% | |
| TAACAAGTTGTGCATTTGGC+AGG | - | tig0006056:282234-282253 | None:intergenic | 40.0% | |
| GGCATAACAAGTTGTGCATT+TGG | - | tig0006056:282238-282257 | None:intergenic | 40.0% | |
| AAACAGCTCTTTCAGTTTCC+TGG | + | tig0006056:282285-282304 | Msa1343010:CDS | 40.0% | |
| AACAGCTCTTTCAGTTTCCT+GGG | + | tig0006056:282286-282305 | Msa1343010:CDS | 40.0% | |
| TTGGGATTAGGTAGAATCTG+GGG | - | tig0006056:282355-282374 | None:intergenic | 40.0% | |
| GATTGGGATTAGGTAGAATC+TGG | - | tig0006056:282357-282376 | None:intergenic | 40.0% | |
| ATTCTACCTAATCCCAATCC+TGG | + | tig0006056:282358-282377 | Msa1343010:CDS | 40.0% | |
| AATATCCAACAGTTGGCTGT+TGG | - | tig0006056:282399-282418 | None:intergenic | 40.0% | |
| AGCCAATGACATAACACCTT+GGG | - | tig0006056:282446-282465 | None:intergenic | 40.0% | |
| TAGCCAATGACATAACACCT+TGG | - | tig0006056:282447-282466 | None:intergenic | 40.0% | |
| TAGATTTAGTTACCAGCGCA+GGG | - | tig0006056:282477-282496 | None:intergenic | 40.0% | |
| ATAGATTTAGTTACCAGCGC+AGG | - | tig0006056:282478-282497 | None:intergenic | 40.0% | |
| TGACGAACCTTCAGAAGATT+TGG | - | tig0006056:282610-282629 | None:intergenic | 40.0% | |
| TCTGCAATCAGTGCCTTATA+TGG | + | tig0006056:282634-282653 | Msa1343010:CDS | 40.0% | |
| TCTAGGAAGATCGCCATATA+AGG | - | tig0006056:282650-282669 | None:intergenic | 40.0% | |
| ! | TTTCTTTTCCTCAGTGGTCT+CGG | - | tig0006056:282863-282882 | None:intergenic | 40.0% |
| ! | GTTTTACAGTGATGAAACGG+AGG | + | tig0006056:282957-282976 | Msa1343010:CDS | 40.0% |
| ACGCCTAATGGAATAACAAC+AGG | + | tig0006056:283012-283031 | Msa1343010:CDS | 40.0% | |
| ! | CCCGTCTGAATATTTTGTGA+TGG | + | tig0006056:283092-283111 | Msa1343010:CDS | 40.0% |
| !!! | TGACTGACACATGTTTTTGG+GGG | + | tig0006056:283195-283214 | Msa1343010:intron | 40.0% |
| ACAATATGGCTGCTGAATTC+TGG | - | tig0006056:283304-283323 | None:intergenic | 40.0% | |
| ! | CAGCAGCCATATTGTTCTTT+TGG | + | tig0006056:283309-283328 | Msa1343010:intron | 40.0% |
| GCAAGACATGACATAGAAGA+CGG | - | tig0006056:283419-283438 | None:intergenic | 40.0% | |
| GAAGTTGGCAGCCATTAAAT+AGG | - | tig0006056:283509-283528 | None:intergenic | 40.0% | |
| AGGCTTACAGCGAACATAAA+TGG | - | tig0006056:283681-283700 | None:intergenic | 40.0% | |
| AGTTTCGGATCAATGTATGC+AGG | + | tig0006056:283711-283730 | Msa1343010:three_prime_UTR | 40.0% | |
| GTTTCGGATCAATGTATGCA+GGG | + | tig0006056:283712-283731 | Msa1343010:three_prime_UTR | 40.0% | |
| ! | TTTTGGCAGGAATTTGGCAA+AGG | + | tig0006056:283868-283887 | Msa1343010:three_prime_UTR | 40.0% |
| ! | GCTGATGGTTTTCATCTTGG+TGG | + | tig0006056:281407-281426 | Msa1343010:CDS | 45.0% |
| !! | AGAGCTCTTGGATTTTGACG+CGG | - | tig0006056:281533-281552 | None:intergenic | 45.0% |
| GCTTACTGCCAGAAGTTTCT+TGG | - | tig0006056:281583-281602 | None:intergenic | 45.0% | |
| TGGCAGTAAGCCTTTGTTAG+TGG | + | tig0006056:281592-281611 | Msa1343010:CDS | 45.0% | |
| GCGACCGGATAAAAACAGTA+TGG | + | tig0006056:281616-281635 | Msa1343010:CDS | 45.0% | |
| ATGGCAGAATACTGAAGAGG+AGG | + | tig0006056:281658-281677 | Msa1343010:CDS | 45.0% | |
| TGAAGAGGAGGAGTTCGATT+GGG | + | tig0006056:281670-281689 | Msa1343010:CDS | 45.0% | |
| ! | AGTAGTTGCACTTGCTGCAA+CGG | - | tig0006056:281783-281802 | None:intergenic | 45.0% |
| TGCAACTACTTCAGCGTCAA+GGG | + | tig0006056:281793-281812 | Msa1343010:CDS | 45.0% | |
| TCAAAAGTTGCTGGCAGAAC+TGG | - | tig0006056:281857-281876 | None:intergenic | 45.0% | |
| !!! | TGCCAGCAACTTTTGAAACG+AGG | + | tig0006056:281861-281880 | Msa1343010:CDS | 45.0% |
| CCATGTTCATGCACAGGAAA+AGG | - | tig0006056:282019-282038 | None:intergenic | 45.0% | |
| ! | CCTTTTCCTGTGCATGAACA+TGG | + | tig0006056:282016-282035 | Msa1343010:CDS | 45.0% |
| TCAACACCATGTTCATGCAC+AGG | - | tig0006056:282025-282044 | None:intergenic | 45.0% | |
| GCTGATTAGGCAACTGATAC+AGG | - | tig0006056:282072-282091 | None:intergenic | 45.0% | |
| GGGTTAGATGAAATCAGACC+GGG | - | tig0006056:282097-282116 | None:intergenic | 45.0% | |
| ! | CGGGTTAGATGAAATCAGAC+CGG | - | tig0006056:282098-282117 | None:intergenic | 45.0% |
| TCATCTAACCCGCATAACAG+TGG | + | tig0006056:282106-282125 | Msa1343010:CDS | 45.0% | |
| GATGGAAAAAACCGGAATGG+TGG | - | tig0006056:282139-282158 | None:intergenic | 45.0% | |
| ACAAGTTGTGCATTTGGCAG+GGG | - | tig0006056:282232-282251 | None:intergenic | 45.0% | |
| CTGTTTGCAATTCTTTGGCC+TGG | - | tig0006056:282271-282290 | None:intergenic | 45.0% | |
| ACAGCTCTTTCAGTTTCCTG+GGG | + | tig0006056:282287-282306 | Msa1343010:CDS | 45.0% | |
| ATTAGTTCACTCATGGCCCA+AGG | + | tig0006056:282427-282446 | Msa1343010:CDS | 45.0% | |
| AGATTTAGTTACCAGCGCAG+GGG | - | tig0006056:282476-282495 | None:intergenic | 45.0% | |
| GCTCATCTTGGGACTTGAAT+CGG | - | tig0006056:282693-282712 | None:intergenic | 45.0% | |
| GTGACTTCTGTGCTCATCTT+GGG | - | tig0006056:282704-282723 | None:intergenic | 45.0% | |
| TGTGACTTCTGTGCTCATCT+TGG | - | tig0006056:282705-282724 | None:intergenic | 45.0% | |
| AGATGAGCACAGAAGTCACA+TGG | + | tig0006056:282705-282724 | Msa1343010:CDS | 45.0% | |
| AGCACAGAAGTCACATGGAT+TGG | + | tig0006056:282710-282729 | Msa1343010:CDS | 45.0% | |
| ACAGTGATGAAACGGAGGAT+TGG | + | tig0006056:282962-282981 | Msa1343010:CDS | 45.0% | |
| ACGGAGGATTGGATGTATAG+AGG | + | tig0006056:282973-282992 | Msa1343010:CDS | 45.0% | |
| GAATAACAACAGGCATGGAC+AGG | + | tig0006056:283022-283041 | Msa1343010:CDS | 45.0% | |
| ! | ATAGCTTGCAACACTAGGCA+TGG | + | tig0006056:283462-283481 | Msa1343010:intron | 45.0% |
| TCTTTGGCTGCCTTCTTCAT+AGG | - | tig0006056:283630-283649 | None:intergenic | 45.0% | |
| GCAGCCAAAGAAAACGAATG+CGG | + | tig0006056:283639-283658 | Msa1343010:CDS | 45.0% | |
| ! | AGCTCCGCATTCGTTTTCTT+TGG | - | tig0006056:283646-283665 | None:intergenic | 45.0% |
| CTGAAGAGGAGGAGTTCGAT+TGG | + | tig0006056:281669-281688 | Msa1343010:CDS | 50.0% | |
| GTGCAACTACTTCAGCGTCA+AGG | + | tig0006056:281792-281811 | Msa1343010:CDS | 50.0% | |
| AAAGTTGCTGGCAGAACTGG+TGG | - | tig0006056:281854-281873 | None:intergenic | 50.0% | |
| CGCCTCGTTTCAAAAGTTGC+TGG | - | tig0006056:281866-281885 | None:intergenic | 50.0% | |
| ACGCGGAGCATGCACATTTA+TGG | - | tig0006056:281891-281910 | None:intergenic | 50.0% | |
| CAGTTGCCTAATCAGCTACC+CGG | + | tig0006056:282076-282095 | Msa1343010:CDS | 50.0% | |
| ATCAGACCGGGTAGCTGATT+AGG | - | tig0006056:282085-282104 | None:intergenic | 50.0% | |
| GCGTTTGTCCACTGTTATGC+GGG | - | tig0006056:282117-282136 | None:intergenic | 50.0% | |
| GGCGTTTGTCCACTGTTATG+CGG | - | tig0006056:282118-282137 | None:intergenic | 50.0% | |
| CTCATAGCAGCACAATGTCC+TGG | - | tig0006056:282205-282224 | None:intergenic | 50.0% | |
| CAAGTTGTGCATTTGGCAGG+GGG | - | tig0006056:282231-282250 | None:intergenic | 50.0% | |
| CAGCTCTTTCAGTTTCCTGG+GGG | + | tig0006056:282288-282307 | Msa1343010:CDS | 50.0% | |
| AGCTCTTTCAGTTTCCTGGG+GGG | + | tig0006056:282289-282308 | Msa1343010:CDS | 50.0% | |
| ! | GAATCTGGGGTAGAGCATGT+GGG | - | tig0006056:282342-282361 | None:intergenic | 50.0% |
| ! | AGAATCTGGGGTAGAGCATG+TGG | - | tig0006056:282343-282362 | None:intergenic | 50.0% |
| GAAGGACCAGGATTGGGATT+AGG | - | tig0006056:282367-282386 | None:intergenic | 50.0% | |
| GACACAGAAGGACCAGGATT+GGG | - | tig0006056:282373-282392 | None:intergenic | 50.0% | |
| TGACACAGAAGGACCAGGAT+TGG | - | tig0006056:282374-282393 | None:intergenic | 50.0% | |
| TCAAGCCAACAGCCAACTGT+TGG | + | tig0006056:282391-282410 | Msa1343010:CDS | 50.0% | |
| ! | GGCCCAAGGTGTTATGTCAT+TGG | + | tig0006056:282441-282460 | Msa1343010:CDS | 50.0% |
| CCACAAGTTGTGCACTGTCT+AGG | - | tig0006056:282667-282686 | None:intergenic | 50.0% | |
| CCTAGACAGTGCACAACTTG+TGG | + | tig0006056:282664-282683 | Msa1343010:CDS | 50.0% | |
| CATCTTGGGACTTGAATCGG+AGG | - | tig0006056:282690-282709 | None:intergenic | 50.0% | |
| CTCACAAACCACTTGCGAGA+GGG | - | tig0006056:282778-282797 | None:intergenic | 50.0% | |
| ACTCACAAACCACTTGCGAG+AGG | - | tig0006056:282779-282798 | None:intergenic | 50.0% | |
| GGTTTGTGAGTGAGACGATG+TGG | + | tig0006056:282788-282807 | Msa1343010:CDS | 50.0% | |
| GTCTCGGTTGGCAAAAAACC+TGG | - | tig0006056:282847-282866 | None:intergenic | 50.0% | |
| ! | TTTTCCTCAGTGGTCTCGGT+TGG | - | tig0006056:282859-282878 | None:intergenic | 50.0% |
| TAGGTGCCCTGCATACAAAG+AGG | - | tig0006056:283611-283630 | None:intergenic | 50.0% | |
| ! | ATGCAGGGCACCTATGAAGA+AGG | + | tig0006056:283617-283636 | Msa1343010:intron | 50.0% |
| GCCTTTGTTAGTGGAGCGAC+CGG | + | tig0006056:281601-281620 | Msa1343010:CDS | 55.0% | |
| TCCGGTCGCTCCACTAACAA+AGG | - | tig0006056:281605-281624 | None:intergenic | 55.0% | |
| ! | GCACTTGCTGCAACGGTAAC+AGG | - | tig0006056:281776-281795 | None:intergenic | 55.0% |
| !! | TCAGCGTCAAGGGTGTTTCC+TGG | + | tig0006056:281803-281822 | Msa1343010:CDS | 55.0% |
| TTGCTGGCAGAACTGGTGGA+CGG | - | tig0006056:281850-281869 | None:intergenic | 55.0% | |
| GTGGACAAACGCCACCATTC+CGG | + | tig0006056:282125-282144 | Msa1343010:CDS | 55.0% | |
| ! | GTTATGCCACTTCCTTCGCC+AGG | + | tig0006056:282250-282269 | Msa1343010:CDS | 55.0% |
| GCAATTCTTTGGCCTGGCGA+AGG | - | tig0006056:282265-282284 | None:intergenic | 55.0% | |
| TTGCCACCTTTACCTCCAGC+TGG | + | tig0006056:282316-282335 | Msa1343010:CDS | 55.0% | |
| TGGCTTGACACAGAAGGACC+AGG | - | tig0006056:282379-282398 | None:intergenic | 55.0% | |
| !! | GGCTGTTGGCTTGACACAGA+AGG | - | tig0006056:282385-282404 | None:intergenic | 55.0% |
| TGCGAGAGGGCTTCTGCTTA+TGG | - | tig0006056:282765-282784 | None:intergenic | 55.0% | |
| GTGAGTGAGACGATGTGGCT+AGG | + | tig0006056:282793-282812 | Msa1343010:CDS | 55.0% | |
| !! | TGGCTAGGTGCAGAGGCATT+GGG | + | tig0006056:282808-282827 | Msa1343010:CDS | 55.0% |
| TTGGGAGCTGAATCAGCTCC+AGG | + | tig0006056:282826-282845 | Msa1343010:CDS | 55.0% | |
| TTTGCCAACCGAGACCACTG+AGG | + | tig0006056:282852-282871 | Msa1343010:CDS | 55.0% | |
| GTTGGCAGTTCTTGCTGACG+AGG | + | tig0006056:282894-282913 | Msa1343010:CDS | 55.0% | |
| GGAGTTATGCTGGGAGGACG+CGG | - | tig0006056:281908-281927 | None:intergenic | 60.0% | |
| GACGCTGCTGGATCCTGAGA+TGG | - | tig0006056:282157-282176 | None:intergenic | 60.0% | |
| CTTTGGCCTGGCGAAGGAAG+TGG | - | tig0006056:282259-282278 | None:intergenic | 60.0% | |
| TGTGGGCCAGCTGGAGGTAA+AGG | - | tig0006056:282325-282344 | None:intergenic | 60.0% | |
| AGCAGAAGCCCTCTCGCAAG+TGG | + | tig0006056:282767-282786 | Msa1343010:CDS | 60.0% | |
| GACGATGTGGCTAGGTGCAG+AGG | + | tig0006056:282801-282820 | Msa1343010:CDS | 60.0% | |
| ! | GTGGCTAGGTGCAGAGGCAT+TGG | + | tig0006056:282807-282826 | Msa1343010:CDS | 60.0% |
| GGCATGGACAGGTCGCAGTT+AGG | + | tig0006056:283033-283052 | Msa1343010:CDS | 60.0% | |
| AAGGTGGCAAAGCTCCCCCC+AGG | - | tig0006056:282306-282325 | None:intergenic | 65.0% | |
| GGGCCAGCTGGAGGTAAAGG+TGG | - | tig0006056:282322-282341 | None:intergenic | 65.0% | |
| AGAGCATGTGGGCCAGCTGG+AGG | - | tig0006056:282331-282350 | None:intergenic | 65.0% | |
| GGTAGAGCATGTGGGCCAGC+TGG | - | tig0006056:282334-282353 | None:intergenic | 65.0% | |
| GGCTAATCAAGCCCCTGCGC+TGG | + | tig0006056:282462-282481 | Msa1343010:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0006056 | gene | 281401 | 284056 | 281401 | ID=Msa1343010;Name=Msa1343010 |
| tig0006056 | mRNA | 281401 | 284056 | 281401 | ID=Msa1343010-mRNA-1;Parent=Msa1343010;Name=Msa1343010-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|1|0.66|1|1|1|3|389|555 |
| tig0006056 | exon | 281401 | 282483 | 281401 | ID=Msa1343010-mRNA-1:exon:3826;Parent=Msa1343010-mRNA-1 |
| tig0006056 | exon | 282583 | 283122 | 282583 | ID=Msa1343010-mRNA-1:exon:3827;Parent=Msa1343010-mRNA-1 |
| tig0006056 | exon | 283623 | 284056 | 283623 | ID=Msa1343010-mRNA-1:exon:3828;Parent=Msa1343010-mRNA-1 |
| tig0006056 | CDS | 281401 | 282483 | 281401 | ID=Msa1343010-mRNA-1:cds;Parent=Msa1343010-mRNA-1 |
| tig0006056 | CDS | 282583 | 283122 | 282583 | ID=Msa1343010-mRNA-1:cds;Parent=Msa1343010-mRNA-1 |
| tig0006056 | CDS | 283623 | 283667 | 283623 | ID=Msa1343010-mRNA-1:cds;Parent=Msa1343010-mRNA-1 |
| tig0006056 | three_prime_UTR | 283668 | 284056 | 283668 | ID=Msa1343010-mRNA-1:three_prime_utr;Parent=Msa1343010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
