Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0687550 | XP_024638686.1 | 98.864 | 352 | 3 | 1 | 56 | 406 | 1 | 352 | 0.0 | 705 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0687550 | sp|Q9ASU7|PPAN_ARATH | 72.785 | 316 | 76 | 2 | 68 | 383 | 17 | 322 | 2.96e-156 | 447 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0687550 | A0A396IA18 | 98.864 | 352 | 3 | 1 | 56 | 406 | 1 | 352 | 0.0 | 705 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0612390 | Msa0687550 | 0.803691 | 3.089317e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0687550 | MtrunA17_Chr4g0038221 | 98.864 | 352 | 3 | 1 | 56 | 406 | 1 | 352 | 0.0 | 705 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0687550 | AT5G61770.3 | 76.109 | 293 | 64 | 1 | 68 | 360 | 17 | 303 | 1.68e-162 | 460 |
| Msa0687550 | AT5G61770.2 | 76.109 | 293 | 64 | 1 | 68 | 360 | 17 | 303 | 1.68e-162 | 460 |
| Msa0687550 | AT5G61770.1 | 72.785 | 316 | 76 | 2 | 68 | 383 | 17 | 322 | 3.01e-157 | 447 |
Find 86 sgRNAs with CRISPR-Local
Find 267 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGGGTCATGTTTCATGGATT+TGG | 0.242847 | 4_4:-52437504 | None:intergenic |
| GAAGTCCTCTTCGACGAATT+TGG | 0.262207 | 4_4:+52441513 | Msa0687550:CDS |
| CTCTTCATCTTCATTATCAT+TGG | 0.273538 | 4_4:-52442282 | None:intergenic |
| AACAGCTTCAAATGGATCTT+AGG | 0.299089 | 4_4:+52438013 | Msa0687550:CDS |
| TTATTCTTCTTGATAATAAC+AGG | 0.299950 | 4_4:-52437892 | None:intergenic |
| GGTATCTTCTTTCCAGTAAT+GGG | 0.301868 | 4_4:-52437946 | None:intergenic |
| AATGAACAACGAAAACTTTC+CGG | 0.311191 | 4_4:-52442358 | None:intergenic |
| AAACAGAGGAAGAATCAAAA+AGG | 0.315897 | 4_4:+52437859 | Msa0687550:intron |
| CCTAGTATTGATCCCATTAC+TGG | 0.323015 | 4_4:+52437934 | Msa0687550:CDS |
| GCCATCAAGTTCCTGATCTA+AGG | 0.340037 | 4_4:+52440751 | Msa0687550:CDS |
| AGAGACTTTCTGAATGTTGC+TGG | 0.344183 | 4_4:+52439793 | Msa0687550:CDS |
| TCCATTTGAAGCTGTTTAAG+AGG | 0.355195 | 4_4:-52438006 | None:intergenic |
| GGGAGATATTAGAAGTATAT+CGG | 0.357927 | 4_4:-52437529 | None:intergenic |
| TCGGGCCGGGTCATGTTTCA+TGG | 0.367215 | 4_4:-52437510 | None:intergenic |
| TGAAGCTGTTTAAGAGGAAC+AGG | 0.377362 | 4_4:-52438000 | None:intergenic |
| GGATGACTCTTCAACTAGTT+AGG | 0.382251 | 4_4:+52441466 | Msa0687550:CDS |
| TGGTATCTTCTTTCCAGTAA+TGG | 0.384814 | 4_4:-52437947 | None:intergenic |
| TCTGAATGTTGCTGGACCTA+TGG | 0.387257 | 4_4:+52439801 | Msa0687550:CDS |
| ATTCGCTTTGAAACACCTAT+AGG | 0.388518 | 4_4:-52440711 | None:intergenic |
| TCCTTAGATCAGGAACTTGA+TGG | 0.390780 | 4_4:-52440752 | None:intergenic |
| TTACGGCTGCAACTAGTGTT+AGG | 0.391218 | 4_4:-52437569 | None:intergenic |
| TTGAGACTGAGAGCAGTATA+AGG | 0.391440 | 4_4:-52438048 | None:intergenic |
| TGATTTGTAAGGGCTGGTTA+TGG | 0.404504 | 4_4:+52441330 | Msa0687550:intron |
| TGAAGATGAAGAGCTTGATT+AGG | 0.405051 | 4_4:+52442292 | Msa0687550:CDS |
| GTGACTTTGTCTAGTAATCT+TGG | 0.411075 | 4_4:+52441387 | Msa0687550:CDS |
| GAGAGTGCGAAGTTGGTTTA+CGG | 0.412564 | 4_4:-52437586 | None:intergenic |
| AATTAAGCAACACAATCCTT+TGG | 0.413513 | 4_4:-52440635 | None:intergenic |
| TCTTCATCTTCATTATCATT+GGG | 0.414299 | 4_4:-52442281 | None:intergenic |
| TCAATTAGATTACAACCTAT+AGG | 0.417293 | 4_4:+52440696 | Msa0687550:CDS |
| TCCTCTTAAACAGCTTCAAA+TGG | 0.419326 | 4_4:+52438005 | Msa0687550:CDS |
| TAGGTTTCTTTCGCAGAGAA+TGG | 0.427971 | 4_4:-52437550 | None:intergenic |
| ATTGAGAAGGGACTGTGTTC+TGG | 0.430812 | 4_4:+52441489 | Msa0687550:CDS |
| CTGAATGTTGCTGGACCTAT+GGG | 0.440731 | 4_4:+52439802 | Msa0687550:CDS |
| CCAGTAATGGGATCAATACT+AGG | 0.442643 | 4_4:-52437934 | None:intergenic |
| AATGATGAAGAAGATTTAGA+AGG | 0.444497 | 4_4:+52442221 | Msa0687550:CDS |
| TAAAACTTCACCTTACTTGA+GGG | 0.447002 | 4_4:+52439855 | Msa0687550:CDS |
| TCTTGAAGATTCCTTAGATC+AGG | 0.447271 | 4_4:-52440762 | None:intergenic |
| TTGTCTGAGGTGGAAGATAT+CGG | 0.467432 | 4_4:-52437659 | None:intergenic |
| AGGTTTCTTTCGCAGAGAAT+GGG | 0.474474 | 4_4:-52437549 | None:intergenic |
| CTAAAACTTCACCTTACTTG+AGG | 0.478099 | 4_4:+52439854 | Msa0687550:CDS |
| TCAATACTAGGCTGTGCCTC+TGG | 0.481355 | 4_4:-52437922 | None:intergenic |
| TATGGCAGAGAGTGCGAAGT+TGG | 0.494831 | 4_4:-52437593 | None:intergenic |
| ATGTAAGAGTAGGTCCTTGT+GGG | 0.499307 | 4_4:-52439888 | None:intergenic |
| GGAGATATTAGAAGTATATC+GGG | 0.501028 | 4_4:-52437528 | None:intergenic |
| GCTGTCAGACTTCAAGAGAT+TGG | 0.502359 | 4_4:+52441438 | Msa0687550:CDS |
| TCTCTCTCCGTCTCCTGCGC+CGG | 0.503479 | 4_4:+52437627 | Msa0687550:CDS |
| ACTAGTTGAAGAGTCATCCT+TGG | 0.508593 | 4_4:-52441462 | None:intergenic |
| AGAGAGACGACGGTGAGTTA+TGG | 0.521251 | 4_4:-52437611 | None:intergenic |
| GTAGTTGCAACCCTCAAGTA+AGG | 0.522894 | 4_4:-52439865 | None:intergenic |
| AAGCTTACCATGGTTGTCTG+AGG | 0.549979 | 4_4:-52437672 | None:intergenic |
| AGAAAGTGAAGCAGATGATG+AGG | 0.552650 | 4_4:+52441356 | Msa0687550:CDS |
| TTATACTGCTCTCAGTCTCA+AGG | 0.554961 | 4_4:+52438050 | Msa0687550:CDS |
| TCAGTGGTGATTTACCTCTA+CGG | 0.556377 | 4_4:+52440461 | Msa0687550:CDS |
| TATTAGAAGTATATCGGGCC+GGG | 0.558094 | 4_4:-52437523 | None:intergenic |
| TCAACTAGTTAGGATTGAGA+AGG | 0.559747 | 4_4:+52441476 | Msa0687550:CDS |
| AGGAAATGTGTGACACCCAT+AGG | 0.559784 | 4_4:-52439817 | None:intergenic |
| TTAAACTCTCGTCTTGCCAA+AGG | 0.560394 | 4_4:+52440619 | Msa0687550:CDS |
| TAAGATACAAGAGTATGCAT+TGG | 0.562852 | 4_4:+52439912 | Msa0687550:CDS |
| GTGCTTTCTGGATTTGTCAG+TGG | 0.563201 | 4_4:+52440445 | Msa0687550:CDS |
| CTTACCATGGTTGTCTGAGG+TGG | 0.563723 | 4_4:-52437669 | None:intergenic |
| TCGGAGATTAACACCGGCGC+AGG | 0.563792 | 4_4:-52437640 | None:intergenic |
| ATATTAGAAGTATATCGGGC+CGG | 0.565994 | 4_4:-52437524 | None:intergenic |
| ATTAACACCGGCGCAGGAGA+CGG | 0.572479 | 4_4:-52437634 | None:intergenic |
| TGTCCAGCAACAGGAAAACC+TGG | 0.576194 | 4_4:+52442167 | Msa0687550:intron |
| AGCAGATGATGAGGCAGCAA+CGG | 0.580635 | 4_4:+52441365 | Msa0687550:CDS |
| CAAATCCATGAAACATGACC+CGG | 0.583582 | 4_4:+52437505 | Msa0687550:exon |
| ATGTTCGTTGTAAGCCGTAG+AGG | 0.589274 | 4_4:-52440475 | None:intergenic |
| ACAGGAAAACCTGGTGACAA+AGG | 0.598599 | 4_4:+52442176 | Msa0687550:CDS |
| TATGACACTACAAAGATGAA+AGG | 0.598818 | 4_4:+52442330 | Msa0687550:three_prime_UTR |
| TGTATCTTAAATGTAAGAGT+AGG | 0.599693 | 4_4:-52439898 | None:intergenic |
| CAAATTGTAGCAGCAGCCAC+CGG | 0.604846 | 4_4:-52442381 | None:intergenic |
| GAAGATGATGATGATCAAGA+TGG | 0.609303 | 4_4:+52442248 | Msa0687550:CDS |
| CAACTAGTTAGGATTGAGAA+GGG | 0.618382 | 4_4:+52441477 | Msa0687550:CDS |
| GAGCTTGATTAGGAACATAG+TGG | 0.622310 | 4_4:+52442302 | Msa0687550:exon |
| ATGTACCAAATTCGTCGAAG+AGG | 0.628027 | 4_4:-52441518 | None:intergenic |
| AATGTAAGAGTAGGTCCTTG+TGG | 0.629934 | 4_4:-52439889 | None:intergenic |
| ACAAAGATGAAAGGTGCCAC+CGG | 0.633702 | 4_4:+52442339 | Msa0687550:three_prime_UTR |
| GACTTCAAGAGATTGGTCCA+AGG | 0.646494 | 4_4:+52441445 | Msa0687550:CDS |
| AGGGTTGCAACTACCCCACA+AGG | 0.673136 | 4_4:+52439874 | Msa0687550:CDS |
| AAAAGATCTTTAGGGCATCG+AGG | 0.675531 | 4_4:-52439964 | None:intergenic |
| AAGATATCGGAGATTAACAC+CGG | 0.677716 | 4_4:-52437646 | None:intergenic |
| CAGGAGACGGAGAGAGACGA+CGG | 0.683622 | 4_4:-52437621 | None:intergenic |
| GAAGAATAACAAGCAACCAG+AGG | 0.684893 | 4_4:+52437906 | Msa0687550:CDS |
| GAACAACGAAAACTTTCCGG+TGG | 0.685958 | 4_4:-52442355 | None:intergenic |
| TCTTCCACCTCAGACAACCA+TGG | 0.697883 | 4_4:+52437665 | Msa0687550:CDS |
| TGTAAGAGTAGGTCCTTGTG+GGG | 0.701027 | 4_4:-52439887 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATAAAATAAAGTTCAA+CGG | + | chr4_4:52438369-52438388 | Msa0687550:intron | 10.0% |
| !!! | AATTTTTAAAAAGATCTTTA+GGG | - | chr4_4:52439975-52439994 | None:intergenic | 10.0% |
| !!! | TTGGATTTTTTTTTTTTGAT+GGG | - | chr4_4:52437785-52437804 | None:intergenic | 15.0% |
| !!! | GAATTTTTAAAAAGATCTTT+AGG | - | chr4_4:52439976-52439995 | None:intergenic | 15.0% |
| !! | TTGATGTGATAAAATTTAAT+AGG | - | chr4_4:52440194-52440213 | None:intergenic | 15.0% |
| !! | ATTAATAATAATGCAAACAA+TGG | - | chr4_4:52441091-52441110 | None:intergenic | 15.0% |
| !! | TTGTTTGCATTATTATTAAT+TGG | + | chr4_4:52441091-52441110 | Msa0687550:intron | 15.0% |
| !!! | GTTGGATTTTTTTTTTTTGA+TGG | - | chr4_4:52437786-52437805 | None:intergenic | 20.0% |
| !!! | TTATTCTTCTTGATAATAAC+AGG | - | chr4_4:52437895-52437914 | None:intergenic | 20.0% |
| !!! | CTTGAAAAAACAAAACTTTT+TGG | - | chr4_4:52437970-52437989 | None:intergenic | 20.0% |
| !!! | AAAAGTTTTGTTTTTTCAAG+AGG | + | chr4_4:52437970-52437989 | Msa0687550:CDS | 20.0% |
| !!! | AAAGTTTTGTTTTTTCAAGA+GGG | + | chr4_4:52437971-52437990 | Msa0687550:CDS | 20.0% |
| !!! | AACATTTTAATTTAAGCGAT+TGG | + | chr4_4:52438325-52438344 | Msa0687550:intron | 20.0% |
| !! | AAATAAGCTAAAAACAACTT+AGG | + | chr4_4:52438444-52438463 | Msa0687550:intron | 20.0% |
| !! | AATAAGCTAAAAACAACTTA+GGG | + | chr4_4:52438445-52438464 | Msa0687550:intron | 20.0% |
| !!! | TCTCAACTAAAATAATTTTC+TGG | + | chr4_4:52438831-52438850 | Msa0687550:intron | 20.0% |
| !!! | TTCTGTAAAACAATGTTTTT+TGG | + | chr4_4:52439191-52439210 | Msa0687550:intron | 20.0% |
| !!! | TCTCAACTAAAATAATTTTC+TGG | + | chr4_4:52438831-52438850 | Msa0687550:intron | 20.0% |
| !! | TAAGAAATTAGGAAAAATGA+AGG | - | chr4_4:52439519-52439538 | None:intergenic | 20.0% |
| !! | TTCTCTCAATTTAAGAAATT+AGG | - | chr4_4:52439530-52439549 | None:intergenic | 20.0% |
| !! | TATTGGCAAACTAATTAAAT+GGG | + | chr4_4:52439552-52439571 | Msa0687550:intron | 20.0% |
| !! | TATTCAAATCTTAAACTCTA+TGG | - | chr4_4:52439596-52439615 | None:intergenic | 20.0% |
| !!! | TAGAGTTTAAGATTTGAATA+CGG | + | chr4_4:52439596-52439615 | Msa0687550:intron | 20.0% |
| !!! | TTTTAGTTTTTGACAATATG+AGG | - | chr4_4:52439840-52439859 | None:intergenic | 20.0% |
| !!! | TCTTTTTAAAAATTCTGCAT+TGG | + | chr4_4:52439981-52440000 | Msa0687550:CDS | 20.0% |
| !! | TTCTAGTGATAGTATTTAAA+TGG | + | chr4_4:52440290-52440309 | Msa0687550:intron | 20.0% |
| !! | TCTAGTGATAGTATTTAAAT+GGG | + | chr4_4:52440291-52440310 | Msa0687550:intron | 20.0% |
| !! | AAATGAAGTAAAATTACTTG+AGG | - | chr4_4:52441559-52441578 | None:intergenic | 20.0% |
| ! | TCAAATTTCAATTCTTCAAC+TGG | + | chr4_4:52437739-52437758 | Msa0687550:intron | 25.0% |
| ! | CAAATTTCAATTCTTCAACT+GGG | + | chr4_4:52437740-52437759 | Msa0687550:intron | 25.0% |
| !! | ATCCAACTTTTTAATGTTGT+TGG | + | chr4_4:52437799-52437818 | Msa0687550:intron | 25.0% |
| ! | ATCCAACAACATTAAAAAGT+TGG | - | chr4_4:52437804-52437823 | None:intergenic | 25.0% |
| ! | GAAGAACAACAAACATAAAA+AGG | - | chr4_4:52438086-52438105 | None:intergenic | 25.0% |
| ! | GATAAGCTTAAATAAGACAA+TGG | + | chr4_4:52438512-52438531 | Msa0687550:intron | 25.0% |
| ! | TTAAATAAGACAATGGAAAC+AGG | + | chr4_4:52438519-52438538 | Msa0687550:intron | 25.0% |
| ! | TGTTGTAAAACAATGTTGTT+TGG | + | chr4_4:52438694-52438713 | Msa0687550:intron | 25.0% |
| ! | GTTATAAACTAATCCAAACT+AGG | - | chr4_4:52438800-52438819 | None:intergenic | 25.0% |
| ! | TAGTTTAGTTATTTATGAGC+TGG | + | chr4_4:52439097-52439116 | Msa0687550:intron | 25.0% |
| ! | TATTAAATCTAACTCGTAGA+TGG | + | chr4_4:52439120-52439139 | Msa0687550:intron | 25.0% |
| !! | AATTTCAGGGATTTTTGTTA+AGG | + | chr4_4:52439242-52439261 | Msa0687550:intron | 25.0% |
| ! | TAGGACAATCAATCTAAATA+AGG | - | chr4_4:52439278-52439297 | None:intergenic | 25.0% |
| ! | GTTATAAACTAATCCAAACT+AGG | - | chr4_4:52438800-52438819 | None:intergenic | 25.0% |
| ! | CTTATTTCAACATAAATGAG+AGG | + | chr4_4:52439408-52439427 | Msa0687550:intron | 25.0% |
| ! | CTTAAATTGAGAGAATCTAT+TGG | + | chr4_4:52439535-52439554 | Msa0687550:intron | 25.0% |
| ! | CTATTGGCAAACTAATTAAA+TGG | + | chr4_4:52439551-52439570 | Msa0687550:intron | 25.0% |
| ! | TGTATCTTAAATGTAAGAGT+AGG | - | chr4_4:52439901-52439920 | None:intergenic | 25.0% |
| ! | ATTAGTTAAGACTGCTAAAT+GGG | + | chr4_4:52440165-52440184 | Msa0687550:intron | 25.0% |
| ! | AGCTGATAATAACACAAAAA+TGG | - | chr4_4:52440249-52440268 | None:intergenic | 25.0% |
| ! | CTAGTGATAGTATTTAAATG+GGG | + | chr4_4:52440292-52440311 | Msa0687550:intron | 25.0% |
| ! | AGATCATAATTCATACATAG+TGG | - | chr4_4:52440369-52440388 | None:intergenic | 25.0% |
| ! | CAATTGTTGGAAAAATATTC+TGG | - | chr4_4:52440504-52440523 | None:intergenic | 25.0% |
| ! | TCAATTAGATTACAACCTAT+AGG | + | chr4_4:52440696-52440715 | Msa0687550:CDS | 25.0% |
| ! | ACTTTATGAAGGATTAACAT+GGG | - | chr4_4:52440913-52440932 | None:intergenic | 25.0% |
| ! | TACTTTATGAAGGATTAACA+TGG | - | chr4_4:52440914-52440933 | None:intergenic | 25.0% |
| !!! | CATCATCTTCTCTTTTTTTT+TGG | + | chr4_4:52441007-52441026 | Msa0687550:intron | 25.0% |
| !! | TAAAAAAGAAGCATAAGCAA+TGG | - | chr4_4:52441287-52441306 | None:intergenic | 25.0% |
| !!! | TTTTTCACTTGTGATTTGTA+AGG | + | chr4_4:52441319-52441338 | Msa0687550:intron | 25.0% |
| !!! | TTTTCACTTGTGATTTGTAA+GGG | + | chr4_4:52441320-52441339 | Msa0687550:intron | 25.0% |
| !! | ATTACTTGAGGAAAAAGTAT+AGG | - | chr4_4:52441547-52441566 | None:intergenic | 25.0% |
| ! | AGAAAAGAGTTAATAGTCAT+TGG | - | chr4_4:52441738-52441757 | None:intergenic | 25.0% |
| ! | AAAGATGTCAAGAAACTTAA+TGG | - | chr4_4:52441958-52441977 | None:intergenic | 25.0% |
| ! | CTAAGAAATTATTAAAGACG+AGG | - | chr4_4:52442006-52442025 | None:intergenic | 25.0% |
| ! | AAATCACAATACAATGACTT+GGG | - | chr4_4:52442031-52442050 | None:intergenic | 25.0% |
| ! | AAAATCACAATACAATGACT+TGG | - | chr4_4:52442032-52442051 | None:intergenic | 25.0% |
| ! | CAGAAAACAAGAAGAAAAAT+GGG | - | chr4_4:52442060-52442079 | None:intergenic | 25.0% |
| ! | TCAGAAAACAAGAAGAAAAA+TGG | - | chr4_4:52442061-52442080 | None:intergenic | 25.0% |
| ! | AATGATGAAGAAGATTTAGA+AGG | + | chr4_4:52442221-52442240 | Msa0687550:CDS | 25.0% |
| ! | TCTTCATCTTCATTATCATT+GGG | - | chr4_4:52442284-52442303 | None:intergenic | 25.0% |
| ! | GGAGATATTAGAAGTATATC+GGG | - | chr4_4:52437531-52437550 | None:intergenic | 30.0% |
| ! | GGGAGATATTAGAAGTATAT+CGG | - | chr4_4:52437532-52437551 | None:intergenic | 30.0% |
| ACTCTAAATTAACAAGAGAG+TGG | - | chr4_4:52437709-52437728 | None:intergenic | 30.0% | |
| !! | TTTTGTTGTGAATGAAACAG+AGG | + | chr4_4:52437845-52437864 | Msa0687550:intron | 30.0% |
| AAACAGAGGAAGAATCAAAA+AGG | + | chr4_4:52437859-52437878 | Msa0687550:intron | 30.0% | |
| AACAGAGGAAGAATCAAAAA+GGG | + | chr4_4:52437860-52437879 | Msa0687550:intron | 30.0% | |
| AAACTGTTTATCAGCTATCA+TGG | + | chr4_4:52438179-52438198 | Msa0687550:intron | 30.0% | |
| ! | GCTTGCTAAAAACAACTTAT+AGG | + | chr4_4:52438205-52438224 | Msa0687550:intron | 30.0% |
| AATGCAAATGAGATACATCT+AGG | - | chr4_4:52438546-52438565 | None:intergenic | 30.0% | |
| CTACGAGTTAGATTTAATAC+AGG | - | chr4_4:52438622-52438641 | None:intergenic | 30.0% | |
| CTGTATTAAATCTAACTCGT+AGG | + | chr4_4:52438620-52438639 | Msa0687550:intron | 30.0% | |
| TATTAAATCTAACTCGTAGG+TGG | + | chr4_4:52438623-52438642 | Msa0687550:intron | 30.0% | |
| ! | TTCATGAGTTTGGAGATTTT+TGG | + | chr4_4:52438657-52438676 | Msa0687550:intron | 30.0% |
| ! | GATTTCAGGGATTTTTGTTA+AGG | + | chr4_4:52438745-52438764 | Msa0687550:intron | 30.0% |
| TAGGACAATCAATCTAAACA+AGG | - | chr4_4:52438781-52438800 | None:intergenic | 30.0% | |
| TTAGATTGATTGTCCTAGTT+TGG | + | chr4_4:52438784-52438803 | Msa0687550:intron | 30.0% | |
| ! | TTATTTTCGTAAGCTATCCA+GGG | - | chr4_4:52438430-52438449 | None:intergenic | 30.0% |
| ! | ATTATTTTCGTAAGCTATCC+AGG | - | chr4_4:52438924-52438943 | None:intergenic | 30.0% |
| GACAATGAAATGTTATGTTG+TGG | + | chr4_4:52439070-52439089 | Msa0687550:intron | 30.0% | |
| !! | TTAAGGTGTTTTCATGAGTT+TGG | + | chr4_4:52439144-52439163 | Msa0687550:intron | 30.0% |
| ! | TGAGTGCTGTATTAATTTCA+GGG | + | chr4_4:52439229-52439248 | Msa0687550:intron | 30.0% |
| TTAGATTGATTGTCCTAGTT+TGG | + | chr4_4:52438784-52438803 | Msa0687550:intron | 30.0% | |
| TTGTCACATGTGATTGAAAT+CGG | - | chr4_4:52439699-52439718 | None:intergenic | 30.0% | |
| ! | CTATTTTGCAGGAAAAGAAA+CGG | + | chr4_4:52439761-52439780 | Msa0687550:intron | 30.0% |
| TAAAACTTCACCTTACTTGA+GGG | + | chr4_4:52439855-52439874 | Msa0687550:CDS | 30.0% | |
| ! | TAAGATACAAGAGTATGCAT+TGG | + | chr4_4:52439912-52439931 | Msa0687550:CDS | 30.0% |
| ! | TTAACCTTTTATTCCTATCG+CGG | + | chr4_4:52440122-52440141 | Msa0687550:intron | 30.0% |
| CATTAGTTAAGACTGCTAAA+TGG | + | chr4_4:52440164-52440183 | Msa0687550:intron | 30.0% | |
| TCACGTTAGATAACTACTAA+TGG | - | chr4_4:52440397-52440416 | None:intergenic | 30.0% | |
| !! | ACAGTTTTAACGTCAATTGT+TGG | - | chr4_4:52440517-52440536 | None:intergenic | 30.0% |
| AATTAAGCAACACAATCCTT+TGG | - | chr4_4:52440638-52440657 | None:intergenic | 30.0% | |
| !!! | AGACTAAGCTCATTGATTTT+CGG | + | chr4_4:52440667-52440686 | Msa0687550:CDS | 30.0% |
| AAATGAGCAAGTATCTTACT+TGG | - | chr4_4:52440805-52440824 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTGGTTGTAACTCG+TGG | + | chr4_4:52441020-52441039 | Msa0687550:intron | 30.0% |
| ! | TGTTTGGATTAATGGGTAAT+GGG | + | chr4_4:52441057-52441076 | Msa0687550:intron | 30.0% |
| TATATCTTCCTTTCTCAATC+AGG | - | chr4_4:52441140-52441159 | None:intergenic | 30.0% | |
| GTTTACTTCTGAATGACTTT+GGG | - | chr4_4:52441237-52441256 | None:intergenic | 30.0% | |
| TGTTTACTTCTGAATGACTT+TGG | - | chr4_4:52441238-52441257 | None:intergenic | 30.0% | |
| TTTGCACAAACGTTCAAAAA+TGG | - | chr4_4:52441661-52441680 | None:intergenic | 30.0% | |
| ! | AAACTTAATGGAGTTTTACG+AGG | - | chr4_4:52441946-52441965 | None:intergenic | 30.0% |
| CTCTTCATCTTCATTATCAT+TGG | - | chr4_4:52442285-52442304 | None:intergenic | 30.0% | |
| TATGACACTACAAAGATGAA+AGG | + | chr4_4:52442330-52442349 | Msa0687550:three_prime_UTR | 30.0% | |
| AATGAACAACGAAAACTTTC+CGG | - | chr4_4:52442361-52442380 | None:intergenic | 30.0% | |
| ! | AAAGTTTTCGTTGTTCATTC+CGG | + | chr4_4:52442362-52442381 | Msa0687550:three_prime_UTR | 30.0% |
| !! | AAACATACTAGATTTTTCGG+CGG | - | chr4_4:52442467-52442486 | None:intergenic | 30.0% |
| ! | ATATTAGAAGTATATCGGGC+CGG | - | chr4_4:52437527-52437546 | None:intergenic | 35.0% |
| AAGATATCGGAGATTAACAC+CGG | - | chr4_4:52437649-52437668 | None:intergenic | 35.0% | |
| AAATGAGGTTAAGCTTACCA+TGG | - | chr4_4:52437685-52437704 | None:intergenic | 35.0% | |
| TAACAAGAGAGTGGTAAATG+AGG | - | chr4_4:52437700-52437719 | None:intergenic | 35.0% | |
| TAATGTTGTTGGATTGAGCT+TGG | + | chr4_4:52437810-52437829 | Msa0687550:intron | 35.0% | |
| GGTATCTTCTTTCCAGTAAT+GGG | - | chr4_4:52437949-52437968 | None:intergenic | 35.0% | |
| TGGTATCTTCTTTCCAGTAA+TGG | - | chr4_4:52437950-52437969 | None:intergenic | 35.0% | |
| TCCTCTTAAACAGCTTCAAA+TGG | + | chr4_4:52438005-52438024 | Msa0687550:CDS | 35.0% | |
| ! | TCCATTTGAAGCTGTTTAAG+AGG | - | chr4_4:52438009-52438028 | None:intergenic | 35.0% |
| AACAGCTTCAAATGGATCTT+AGG | + | chr4_4:52438013-52438032 | Msa0687550:CDS | 35.0% | |
| CTTGAGAGAACTTATGGAAA+GGG | - | chr4_4:52438242-52438261 | None:intergenic | 35.0% | |
| !! | AAATGAGCTATGGCTTTGTT+TGG | + | chr4_4:52438299-52438318 | Msa0687550:intron | 35.0% |
| !! | CTTATTTTCGTAAGCTATCC+AGG | - | chr4_4:52438431-52438450 | None:intergenic | 35.0% |
| ! | AGACAGTGAAATGTTTGTTG+TGG | + | chr4_4:52438573-52438592 | Msa0687550:intron | 35.0% |
| !! | TGAGTGCTGTATTGATTTCA+GGG | + | chr4_4:52438732-52438751 | Msa0687550:intron | 35.0% |
| !!! | TTCTGGTTTTTACTCTCGAA+AGG | + | chr4_4:52438848-52438867 | Msa0687550:intron | 35.0% |
| GAGCTTATGACATCTCTATA+AGG | - | chr4_4:52438957-52438976 | None:intergenic | 35.0% | |
| TCAAATAAGCCAGTTGAAAC+AGG | + | chr4_4:52439015-52439034 | Msa0687550:intron | 35.0% | |
| !! | TCTAACTCGTAGATGGATTA+AGG | + | chr4_4:52439127-52439146 | Msa0687550:intron | 35.0% |
| !! | TTCATGAGTTTGGAGTCTTT+TGG | + | chr4_4:52439154-52439173 | Msa0687550:intron | 35.0% |
| ! | GTGAGTGCTGTATTAATTTC+AGG | + | chr4_4:52439228-52439247 | Msa0687550:intron | 35.0% |
| AGAGGTAATTTGAATGAGAG+AGG | + | chr4_4:52439363-52439382 | Msa0687550:intron | 35.0% | |
| CAACATAAATGAGAGGCTAT+TGG | + | chr4_4:52439415-52439434 | Msa0687550:intron | 35.0% | |
| TATTGAGAAGCTTGTCATAC+TGG | + | chr4_4:52439493-52439512 | Msa0687550:intron | 35.0% | |
| CTACAAGAGTCAATTTCTCT+GGG | - | chr4_4:52439639-52439658 | None:intergenic | 35.0% | |
| ! | CAGAGAAATTGACTCTTGTA+GGG | + | chr4_4:52439638-52439657 | Msa0687550:intron | 35.0% |
| GATTTCAATCACATGTGACA+AGG | + | chr4_4:52439698-52439717 | Msa0687550:intron | 35.0% | |
| ! | CGTTTCTTTTCCTGCAAAAT+AGG | - | chr4_4:52439763-52439782 | None:intergenic | 35.0% |
| CTAAAACTTCACCTTACTTG+AGG | + | chr4_4:52439854-52439873 | Msa0687550:CDS | 35.0% | |
| TTGCTAATGAAATGCGAGAA+AGG | + | chr4_4:52440082-52440101 | Msa0687550:intron | 35.0% | |
| TGCTAATGAAATGCGAGAAA+GGG | + | chr4_4:52440083-52440102 | Msa0687550:intron | 35.0% | |
| AGTCTTAACTGATTGCAAAC+GGG | - | chr4_4:52440325-52440344 | None:intergenic | 35.0% | |
| CAGTCTTAACTGATTGCAAA+CGG | - | chr4_4:52440326-52440345 | None:intergenic | 35.0% | |
| GTAGTTATCTAACGTGATGT+TGG | + | chr4_4:52440400-52440419 | Msa0687550:intron | 35.0% | |
| ! | TTTTACCAGATTGTGCTTTC+TGG | + | chr4_4:52440433-52440452 | Msa0687550:intron | 35.0% |
| GTTTAACCTGAAATATACCG+CGG | - | chr4_4:52440605-52440624 | None:intergenic | 35.0% | |
| !! | ATTCGCTTTGAAACACCTAT+AGG | - | chr4_4:52440714-52440733 | None:intergenic | 35.0% |
| TCTTGAAGATTCCTTAGATC+AGG | - | chr4_4:52440765-52440784 | None:intergenic | 35.0% | |
| TGCAATGCTAATGACAGAAA+AGG | - | chr4_4:52440890-52440909 | None:intergenic | 35.0% | |
| CAGACTTGCATACTTTATGA+AGG | - | chr4_4:52440924-52440943 | None:intergenic | 35.0% | |
| ! | TGTAACTCGTGGTTTTTCTA+AGG | + | chr4_4:52441031-52441050 | Msa0687550:intron | 35.0% |
| ! | GTAACTCGTGGTTTTTCTAA+GGG | + | chr4_4:52441032-52441051 | Msa0687550:intron | 35.0% |
| ! | TAAGGGTGTGTTTGGATTAA+TGG | + | chr4_4:52441049-52441068 | Msa0687550:intron | 35.0% |
| ! | AAGGGTGTGTTTGGATTAAT+GGG | + | chr4_4:52441050-52441069 | Msa0687550:intron | 35.0% |
| ! | GTGTTTGGATTAATGGGTAA+TGG | + | chr4_4:52441056-52441075 | Msa0687550:intron | 35.0% |
| AATATCAGCCTGATTGAGAA+AGG | + | chr4_4:52441129-52441148 | Msa0687550:intron | 35.0% | |
| GTGACTTTGTCTAGTAATCT+TGG | + | chr4_4:52441387-52441406 | Msa0687550:CDS | 35.0% | |
| TCAACTAGTTAGGATTGAGA+AGG | + | chr4_4:52441476-52441495 | Msa0687550:CDS | 35.0% | |
| CAACTAGTTAGGATTGAGAA+GGG | + | chr4_4:52441477-52441496 | Msa0687550:CDS | 35.0% | |
| ! | CTATCATCTTTTACTGTCTC+AGG | + | chr4_4:52441609-52441628 | Msa0687550:intron | 35.0% |
| CGAAATCATACACATGGATT+GGG | - | chr4_4:52441825-52441844 | None:intergenic | 35.0% | |
| ACGAAATCATACACATGGAT+TGG | - | chr4_4:52441826-52441845 | None:intergenic | 35.0% | |
| AATCCATGTGTATGATTTCG+TGG | + | chr4_4:52441825-52441844 | Msa0687550:intron | 35.0% | |
| ! | CTTCACTCTTGTTATCTTTC+TGG | + | chr4_4:52441886-52441905 | Msa0687550:intron | 35.0% |
| CAGATACAAAAGAGATGAGA+GGG | - | chr4_4:52442115-52442134 | None:intergenic | 35.0% | |
| TCAGATACAAAAGAGATGAG+AGG | - | chr4_4:52442116-52442135 | None:intergenic | 35.0% | |
| ! | GAAGATGATGATGATCAAGA+TGG | + | chr4_4:52442248-52442267 | Msa0687550:CDS | 35.0% |
| TGAAGATGAAGAGCTTGATT+AGG | + | chr4_4:52442292-52442311 | Msa0687550:CDS | 35.0% | |
| CAAATCCATGAAACATGACC+CGG | + | chr4_4:52437505-52437524 | Msa0687550:exon | 40.0% | |
| ! | TATTAGAAGTATATCGGGCC+GGG | - | chr4_4:52437526-52437545 | None:intergenic | 40.0% |
| AGGTTTCTTTCGCAGAGAAT+GGG | - | chr4_4:52437552-52437571 | None:intergenic | 40.0% | |
| TAGGTTTCTTTCGCAGAGAA+TGG | - | chr4_4:52437553-52437572 | None:intergenic | 40.0% | |
| ! | TTGTCTGAGGTGGAAGATAT+CGG | - | chr4_4:52437662-52437681 | None:intergenic | 40.0% |
| GAAGAATAACAAGCAACCAG+AGG | + | chr4_4:52437906-52437925 | Msa0687550:CDS | 40.0% | |
| ! | CCAGTAATGGGATCAATACT+AGG | - | chr4_4:52437937-52437956 | None:intergenic | 40.0% |
| !! | CCTAGTATTGATCCCATTAC+TGG | + | chr4_4:52437934-52437953 | Msa0687550:CDS | 40.0% |
| TGAAGCTGTTTAAGAGGAAC+AGG | - | chr4_4:52438003-52438022 | None:intergenic | 40.0% | |
| TTGAGACTGAGAGCAGTATA+AGG | - | chr4_4:52438051-52438070 | None:intergenic | 40.0% | |
| TTATACTGCTCTCAGTCTCA+AGG | + | chr4_4:52438050-52438069 | Msa0687550:CDS | 40.0% | |
| GCTTGAGAGAACTTATGGAA+AGG | - | chr4_4:52438243-52438262 | None:intergenic | 40.0% | |
| AGACAGCTTGAGAGAACTTA+TGG | - | chr4_4:52438248-52438267 | None:intergenic | 40.0% | |
| ACACAAGTGCTTATGTGAGT+AGG | + | chr4_4:52438269-52438288 | Msa0687550:intron | 40.0% | |
| AGGTAAGCTCAAATGAGCTA+TGG | + | chr4_4:52438289-52438308 | Msa0687550:intron | 40.0% | |
| !! | TCTAACTCGTAGGTGGATTA+AGG | + | chr4_4:52438630-52438649 | Msa0687550:intron | 40.0% |
| TTAAGGTGGCTTCATGAGTT+TGG | + | chr4_4:52438647-52438666 | Msa0687550:intron | 40.0% | |
| !! | GTGAGTGCTGTATTGATTTC+AGG | + | chr4_4:52438731-52438750 | Msa0687550:intron | 40.0% |
| !!! | TTCTGGTTTTTACTCTCGAG+AGG | + | chr4_4:52439345-52439364 | Msa0687550:intron | 40.0% |
| CCTACAAGAGTCAATTTCTC+TGG | - | chr4_4:52439640-52439659 | None:intergenic | 40.0% | |
| ! | CCAGAGAAATTGACTCTTGT+AGG | + | chr4_4:52439637-52439656 | Msa0687550:intron | 40.0% |
| TTCAATCACATGTGACAAGG+TGG | + | chr4_4:52439701-52439720 | Msa0687550:intron | 40.0% | |
| ! | TCTCATGTCTCCTATTTTGC+AGG | + | chr4_4:52439750-52439769 | Msa0687550:intron | 40.0% |
| AGAGACTTTCTGAATGTTGC+TGG | + | chr4_4:52439793-52439812 | Msa0687550:CDS | 40.0% | |
| ATGTAAGAGTAGGTCCTTGT+GGG | - | chr4_4:52439891-52439910 | None:intergenic | 40.0% | |
| AATGTAAGAGTAGGTCCTTG+TGG | - | chr4_4:52439892-52439911 | None:intergenic | 40.0% | |
| !! | AAAAGATCTTTAGGGCATCG+AGG | - | chr4_4:52439967-52439986 | None:intergenic | 40.0% |
| TTCACCGCGATAGGAATAAA+AGG | - | chr4_4:52440129-52440148 | None:intergenic | 40.0% | |
| CTATCGCGGTGAAGAATTAA+GGG | + | chr4_4:52440136-52440155 | Msa0687550:intron | 40.0% | |
| ! | CAAATCCAGAAAGCACAATC+TGG | - | chr4_4:52440441-52440460 | None:intergenic | 40.0% |
| TCAGTGGTGATTTACCTCTA+CGG | + | chr4_4:52440461-52440480 | Msa0687550:CDS | 40.0% | |
| TTAAACTCTCGTCTTGCCAA+AGG | + | chr4_4:52440619-52440638 | Msa0687550:CDS | 40.0% | |
| TCCTTAGATCAGGAACTTGA+TGG | - | chr4_4:52440755-52440774 | None:intergenic | 40.0% | |
| !! | GGTTTTTCTAAGGGTGTGTT+TGG | + | chr4_4:52441041-52441060 | Msa0687550:intron | 40.0% |
| !! | TGATTTGTAAGGGCTGGTTA+TGG | + | chr4_4:52441330-52441349 | Msa0687550:intron | 40.0% |
| AGAAAGTGAAGCAGATGATG+AGG | + | chr4_4:52441356-52441375 | Msa0687550:CDS | 40.0% | |
| ACTAGTTGAAGAGTCATCCT+TGG | - | chr4_4:52441465-52441484 | None:intergenic | 40.0% | |
| GGATGACTCTTCAACTAGTT+AGG | + | chr4_4:52441466-52441485 | Msa0687550:CDS | 40.0% | |
| ATGTACCAAATTCGTCGAAG+AGG | - | chr4_4:52441521-52441540 | None:intergenic | 40.0% | |
| GACGAGGAAAGAAAAGAACA+AGG | - | chr4_4:52441990-52442009 | None:intergenic | 40.0% | |
| ! | TCAGTTTTTCCTTTGTCACC+AGG | - | chr4_4:52442188-52442207 | None:intergenic | 40.0% |
| GAGCTTGATTAGGAACATAG+TGG | + | chr4_4:52442302-52442321 | Msa0687550:exon | 40.0% | |
| CGGGTCATGTTTCATGGATT+TGG | - | chr4_4:52437507-52437526 | None:intergenic | 45.0% | |
| TTACGGCTGCAACTAGTGTT+AGG | - | chr4_4:52437572-52437591 | None:intergenic | 45.0% | |
| ! | GAGAGTGCGAAGTTGGTTTA+CGG | - | chr4_4:52437589-52437608 | None:intergenic | 45.0% |
| AAGCTTACCATGGTTGTCTG+AGG | - | chr4_4:52437675-52437694 | None:intergenic | 45.0% | |
| ! | ACTGTTTTCGTAAGCTGTCC+TGG | + | chr4_4:52438410-52438429 | Msa0687550:intron | 45.0% |
| !! | AACTCGTAGGTGGATTAAGG+TGG | + | chr4_4:52438633-52438652 | Msa0687550:intron | 45.0% |
| ! | ACTATTTTCGTAAGCTGCCC+TGG | + | chr4_4:52438903-52438922 | Msa0687550:intron | 45.0% |
| AGCCAGTTGAAACAGGTCTT+AGG | + | chr4_4:52439022-52439041 | Msa0687550:intron | 45.0% | |
| CACCTAAGACCTGTTTCAAC+TGG | - | chr4_4:52439027-52439046 | None:intergenic | 45.0% | |
| TCTGAATGTTGCTGGACCTA+TGG | + | chr4_4:52439801-52439820 | Msa0687550:CDS | 45.0% | |
| CTGAATGTTGCTGGACCTAT+GGG | + | chr4_4:52439802-52439821 | Msa0687550:CDS | 45.0% | |
| AGGAAATGTGTGACACCCAT+AGG | - | chr4_4:52439820-52439839 | None:intergenic | 45.0% | |
| GTAGTTGCAACCCTCAAGTA+AGG | - | chr4_4:52439868-52439887 | None:intergenic | 45.0% | |
| TGTAAGAGTAGGTCCTTGTG+GGG | - | chr4_4:52439890-52439909 | None:intergenic | 45.0% | |
| CCTTAATTCTTCACCGCGAT+AGG | - | chr4_4:52440138-52440157 | None:intergenic | 45.0% | |
| CCTATCGCGGTGAAGAATTA+AGG | + | chr4_4:52440135-52440154 | Msa0687550:intron | 45.0% | |
| GTGCTTTCTGGATTTGTCAG+TGG | + | chr4_4:52440445-52440464 | Msa0687550:CDS | 45.0% | |
| ATGTTCGTTGTAAGCCGTAG+AGG | - | chr4_4:52440478-52440497 | None:intergenic | 45.0% | |
| CTGAAATATACCGCGGCATT+AGG | - | chr4_4:52440598-52440617 | None:intergenic | 45.0% | |
| CTAATGCCGCGGTATATTTC+AGG | + | chr4_4:52440596-52440615 | Msa0687550:intron | 45.0% | |
| GCCATCAAGTTCCTGATCTA+AGG | + | chr4_4:52440751-52440770 | Msa0687550:CDS | 45.0% | |
| !! | GGATTAATGGGTAATGGGAC+AGG | + | chr4_4:52441062-52441081 | Msa0687550:intron | 45.0% |
| ! | CACTTGTGATTTGTAAGGGC+TGG | + | chr4_4:52441324-52441343 | Msa0687550:intron | 45.0% |
| GCTGTCAGACTTCAAGAGAT+TGG | + | chr4_4:52441438-52441457 | Msa0687550:CDS | 45.0% | |
| ! | GACTTCAAGAGATTGGTCCA+AGG | + | chr4_4:52441445-52441464 | Msa0687550:CDS | 45.0% |
| ATTGAGAAGGGACTGTGTTC+TGG | + | chr4_4:52441489-52441508 | Msa0687550:CDS | 45.0% | |
| GAAGTCCTCTTCGACGAATT+TGG | + | chr4_4:52441513-52441532 | Msa0687550:CDS | 45.0% | |
| ACGCCACGAAATCATACACA+TGG | - | chr4_4:52441831-52441850 | None:intergenic | 45.0% | |
| CGAGGATATGCGATCAGAAA+GGG | - | chr4_4:52441928-52441947 | None:intergenic | 45.0% | |
| ACGAGGATATGCGATCAGAA+AGG | - | chr4_4:52441929-52441948 | None:intergenic | 45.0% | |
| ACAAAAGAGATGAGAGGGAG+AGG | - | chr4_4:52442110-52442129 | None:intergenic | 45.0% | |
| ACAGGAAAACCTGGTGACAA+AGG | + | chr4_4:52442176-52442195 | Msa0687550:CDS | 45.0% | |
| !! | ACAAAGATGAAAGGTGCCAC+CGG | + | chr4_4:52442339-52442358 | Msa0687550:three_prime_UTR | 45.0% |
| GAACAACGAAAACTTTCCGG+TGG | - | chr4_4:52442358-52442377 | None:intergenic | 45.0% | |
| ! | GTTTTCGTTGTTCATTCCGG+TGG | + | chr4_4:52442365-52442384 | Msa0687550:three_prime_UTR | 45.0% |
| ! | TATGGCAGAGAGTGCGAAGT+TGG | - | chr4_4:52437596-52437615 | None:intergenic | 50.0% |
| AGAGAGACGACGGTGAGTTA+TGG | - | chr4_4:52437614-52437633 | None:intergenic | 50.0% | |
| TCTTCCACCTCAGACAACCA+TGG | + | chr4_4:52437665-52437684 | Msa0687550:CDS | 50.0% | |
| CTTACCATGGTTGTCTGAGG+TGG | - | chr4_4:52437672-52437691 | None:intergenic | 50.0% | |
| TCAATACTAGGCTGTGCCTC+TGG | - | chr4_4:52437925-52437944 | None:intergenic | 50.0% | |
| AAGTCGATCTCCTAATGCCG+CGG | + | chr4_4:52440585-52440604 | Msa0687550:intron | 50.0% | |
| AGCAGATGATGAGGCAGCAA+CGG | + | chr4_4:52441365-52441384 | Msa0687550:CDS | 50.0% | |
| !! | ACATGGATTGGGTGCTGAAG+TGG | - | chr4_4:52441814-52441833 | None:intergenic | 50.0% |
| ! | GGTTTTCCTGTTGCTGGACA+AGG | - | chr4_4:52442167-52442186 | None:intergenic | 50.0% |
| TGTCCAGCAACAGGAAAACC+TGG | + | chr4_4:52442167-52442186 | Msa0687550:intron | 50.0% | |
| ! | TCACCAGGTTTTCCTGTTGC+TGG | - | chr4_4:52442173-52442192 | None:intergenic | 50.0% |
| CAAATTGTAGCAGCAGCCAC+CGG | - | chr4_4:52442384-52442403 | None:intergenic | 50.0% | |
| ATTAACACCGGCGCAGGAGA+CGG | - | chr4_4:52437637-52437656 | None:intergenic | 55.0% | |
| AGGGTTGCAACTACCCCACA+AGG | + | chr4_4:52439874-52439893 | Msa0687550:CDS | 55.0% | |
| GTTCTGCCTTGTCCAGCAAC+AGG | + | chr4_4:52442158-52442177 | Msa0687550:intron | 55.0% | |
| TCGGGCCGGGTCATGTTTCA+TGG | - | chr4_4:52437513-52437532 | None:intergenic | 60.0% | |
| CAGGAGACGGAGAGAGACGA+CGG | - | chr4_4:52437624-52437643 | None:intergenic | 60.0% | |
| TCGGAGATTAACACCGGCGC+AGG | - | chr4_4:52437643-52437662 | None:intergenic | 60.0% | |
| TCTCTCTCCGTCTCCTGCGC+CGG | + | chr4_4:52437627-52437646 | Msa0687550:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 52437497 | 52442487 | 52437497 | ID=Msa0687550;Name=Msa0687550 |
| chr4_4 | mRNA | 52437497 | 52442487 | 52437497 | ID=Msa0687550-mRNA-1;Parent=Msa0687550;Name=Msa0687550-mRNA-1;_AED=0.04;_eAED=0.04;_QI=22|1|1|1|1|1|7|174|406 |
| chr4_4 | exon | 52437497 | 52437686 | 52437497 | ID=Msa0687550-mRNA-1:exon:13729;Parent=Msa0687550-mRNA-1 |
| chr4_4 | exon | 52437865 | 52438071 | 52437865 | ID=Msa0687550-mRNA-1:exon:13730;Parent=Msa0687550-mRNA-1 |
| chr4_4 | exon | 52439772 | 52440002 | 52439772 | ID=Msa0687550-mRNA-1:exon:13731;Parent=Msa0687550-mRNA-1 |
| chr4_4 | exon | 52440442 | 52440534 | 52440442 | ID=Msa0687550-mRNA-1:exon:13732;Parent=Msa0687550-mRNA-1 |
| chr4_4 | exon | 52440618 | 52440805 | 52440618 | ID=Msa0687550-mRNA-1:exon:13733;Parent=Msa0687550-mRNA-1 |
| chr4_4 | exon | 52441341 | 52441534 | 52441341 | ID=Msa0687550-mRNA-1:exon:13734;Parent=Msa0687550-mRNA-1 |
| chr4_4 | exon | 52442174 | 52442487 | 52442174 | ID=Msa0687550-mRNA-1:exon:13735;Parent=Msa0687550-mRNA-1 |
| chr4_4 | five_prime_UTR | 52437497 | 52437518 | 52437497 | ID=Msa0687550-mRNA-1:five_prime_utr;Parent=Msa0687550-mRNA-1 |
| chr4_4 | CDS | 52437519 | 52437686 | 52437519 | ID=Msa0687550-mRNA-1:cds;Parent=Msa0687550-mRNA-1 |
| chr4_4 | CDS | 52437865 | 52438071 | 52437865 | ID=Msa0687550-mRNA-1:cds;Parent=Msa0687550-mRNA-1 |
| chr4_4 | CDS | 52439772 | 52440002 | 52439772 | ID=Msa0687550-mRNA-1:cds;Parent=Msa0687550-mRNA-1 |
| chr4_4 | CDS | 52440442 | 52440534 | 52440442 | ID=Msa0687550-mRNA-1:cds;Parent=Msa0687550-mRNA-1 |
| chr4_4 | CDS | 52440618 | 52440805 | 52440618 | ID=Msa0687550-mRNA-1:cds;Parent=Msa0687550-mRNA-1 |
| chr4_4 | CDS | 52441341 | 52441534 | 52441341 | ID=Msa0687550-mRNA-1:cds;Parent=Msa0687550-mRNA-1 |
| chr4_4 | CDS | 52442174 | 52442313 | 52442174 | ID=Msa0687550-mRNA-1:cds;Parent=Msa0687550-mRNA-1 |
| chr4_4 | three_prime_UTR | 52442314 | 52442487 | 52442314 | ID=Msa0687550-mRNA-1:three_prime_utr;Parent=Msa0687550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
