Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0687720 | RDX58157.1 | 63.014 | 73 | 22 | 1 | 29 | 96 | 23 | 95 | 1.41e-21 | 94.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0687720 | sp|Q9ZPS3|DCE4_ARATH | 58.462 | 65 | 22 | 1 | 28 | 87 | 26 | 90 | 3.38e-18 | 81.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0687720 | A0A371E038 | 63.014 | 73 | 22 | 1 | 29 | 96 | 23 | 95 | 6.75e-22 | 94.4 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0623960 | Msa0687720 | 0.877145 | 7.947909e-69 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0687720 | MtrunA17_Chr8g0375301 | 60.811 | 74 | 24 | 1 | 28 | 96 | 26 | 99 | 1.10e-23 | 93.2 |
| Msa0687720 | MtrunA17_Chr5g0433921 | 56.061 | 66 | 24 | 1 | 27 | 87 | 25 | 90 | 2.61e-19 | 75.9 |
| Msa0687720 | MtrunA17_Chr3g0109901 | 49.333 | 75 | 33 | 1 | 27 | 96 | 25 | 99 | 8.39e-18 | 76.6 |
| Msa0687720 | MtrunA17_Chr6g0480631 | 44.595 | 74 | 36 | 1 | 28 | 96 | 29 | 102 | 2.13e-16 | 72.8 |
| Msa0687720 | MtrunA17_Chr4g0038791 | 73.684 | 38 | 10 | 0 | 34 | 71 | 1 | 38 | 5.15e-13 | 58.2 |
| Msa0687720 | MtrunA17_Chr4g0038801 | 65.385 | 52 | 14 | 2 | 24 | 73 | 9 | 58 | 8.24e-13 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0687720 | AT2G02010.1 | 58.462 | 65 | 22 | 1 | 28 | 87 | 26 | 90 | 3.44e-19 | 81.3 |
| Msa0687720 | AT2G02010.2 | 58.462 | 65 | 22 | 1 | 28 | 87 | 78 | 142 | 5.20e-19 | 80.5 |
| Msa0687720 | AT5G17330.1 | 57.576 | 66 | 23 | 1 | 27 | 87 | 25 | 90 | 6.74e-19 | 80.1 |
| Msa0687720 | AT3G17760.2 | 45.205 | 73 | 35 | 1 | 29 | 96 | 26 | 98 | 2.30e-16 | 73.2 |
| Msa0687720 | AT3G17760.1 | 45.205 | 73 | 35 | 1 | 29 | 96 | 26 | 98 | 2.30e-16 | 73.2 |
| Msa0687720 | AT1G65960.2 | 44.000 | 75 | 37 | 1 | 27 | 96 | 24 | 98 | 2.08e-15 | 70.5 |
| Msa0687720 | AT2G02000.1 | 43.243 | 74 | 37 | 1 | 28 | 96 | 26 | 99 | 3.05e-13 | 64.3 |
Find 35 sgRNAs with CRISPR-Local
Find 252 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTGTTTGTCCAAGAATT+TGG | 0.102194 | 4_4:+52686806 | None:intergenic |
| TTGGCTTATACAATTAAATA+AGG | 0.257234 | 4_4:+52686496 | None:intergenic |
| AGAACCAAACGAAGCAAATA+AGG | 0.330837 | 4_4:-52687053 | Msa0687720:exon |
| TATTCCTTATTTGCTTCGTT+TGG | 0.353520 | 4_4:+52687049 | None:intergenic |
| ATGGAAATCATGTTCAACTT+TGG | 0.357144 | 4_4:+52687158 | None:intergenic |
| TGGAAATCATGTTCAACTTT+GGG | 0.363923 | 4_4:+52687159 | None:intergenic |
| TTATGGTATACAACTTCCTT+TGG | 0.381162 | 4_4:+52687212 | None:intergenic |
| ATTTGTGTCACAATAATCAT+TGG | 0.382968 | 4_4:+52686609 | None:intergenic |
| CATACATGATAAGCTGTTGT+TGG | 0.391560 | 4_4:-52687189 | Msa0687720:CDS |
| ACAGCTTATCATGTATGTTA+TGG | 0.438601 | 4_4:+52687195 | None:intergenic |
| AGGAATAGCGTTGGTGGAAA+AGG | 0.441467 | 4_4:-52687033 | Msa0687720:intron |
| ACATATACTGCAATGTGGTA+TGG | 0.442915 | 4_4:+52686832 | None:intergenic |
| TTCTAGCATATGTAGGTATC+CGG | 0.451200 | 4_4:+52686870 | None:intergenic |
| CATATACTGCAATGTGGTAT+GGG | 0.464419 | 4_4:+52686833 | None:intergenic |
| CTACCAGCACAAGGAGTATC+CGG | 0.486689 | 4_4:-52686703 | Msa0687720:three_prime_UTR |
| CAAATAAGGAATAGCGTTGG+TGG | 0.493624 | 4_4:-52687039 | Msa0687720:exon |
| CTTAGAACTCTGTTGCTGTC+CGG | 0.499683 | 4_4:+52686660 | None:intergenic |
| TTTATTGCACTCTTCGTCCA+TGG | 0.503420 | 4_4:+52687139 | None:intergenic |
| GTGGAGACAAATCATAAATC+CGG | 0.503730 | 4_4:-52686889 | Msa0687720:three_prime_UTR |
| TATCCGGATACTCCTTGTGC+TGG | 0.524751 | 4_4:+52686700 | None:intergenic |
| AAAGTTGAACATGATTTCCA+TGG | 0.534777 | 4_4:-52687156 | Msa0687720:CDS |
| CAGCTTCTTCTAGCATATGT+AGG | 0.535315 | 4_4:+52686863 | None:intergenic |
| TTATACAATTAAATAAGGTA+TGG | 0.535450 | 4_4:+52686501 | None:intergenic |
| CGGATACTCCTTGTGCTGGT+AGG | 0.539807 | 4_4:+52686704 | None:intergenic |
| CTACATATGCTAGAAGAAGC+TGG | 0.564277 | 4_4:-52686862 | Msa0687720:three_prime_UTR |
| GGGTAATGATGTTAATGTCA+AGG | 0.584717 | 4_4:+52690420 | None:intergenic |
| GGAATTAGAGATAATGACAA+TGG | 0.586826 | 4_4:-52686782 | Msa0687720:three_prime_UTR |
| AAGCAAATAAGGAATAGCGT+TGG | 0.633491 | 4_4:-52687042 | Msa0687720:exon |
| CAAATGTGCTTCATATTATG+CGG | 0.636821 | 4_4:-52686911 | Msa0687720:three_prime_UTR |
| ACTCGATTCCTACCAGCACA+AGG | 0.647018 | 4_4:-52686712 | Msa0687720:three_prime_UTR |
| ATGTGCTTCATATTATGCGG+TGG | 0.654013 | 4_4:-52686908 | Msa0687720:three_prime_UTR |
| TGACATTAACATCATTACCC+AGG | 0.660047 | 4_4:-52690417 | Msa0687720:intron |
| AATTCTTGGACAAACAAGAG+AGG | 0.663272 | 4_4:-52686803 | Msa0687720:three_prime_UTR |
| ATATACTGCAATGTGGTATG+GGG | 0.700671 | 4_4:+52686834 | None:intergenic |
| GGAAAACATATACTGCAATG+TGG | 0.704265 | 4_4:+52686827 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTTATTTTAAAAATTT+AGG | + | chr4_4:52688644-52688663 | None:intergenic | 0.0% |
| !! | AAAAATTGTCATTATAATAA+TGG | + | chr4_4:52686606-52686625 | None:intergenic | 10.0% |
| !!! | AAAATAAGTATTTTTATTCT+AGG | - | chr4_4:52686664-52686683 | Msa0687720:three_prime_UTR | 10.0% |
| !!! | AAAAAATTCTAATTTTTTTC+AGG | - | chr4_4:52687044-52687063 | Msa0687720:exon | 10.0% |
| !! | AAAAAATTGACATATTTATA+GGG | - | chr4_4:52687178-52687197 | Msa0687720:CDS | 10.0% |
| !!! | AATCTTAATTATTTTATAGT+TGG | - | chr4_4:52687260-52687279 | Msa0687720:intron | 10.0% |
| !!! | ATCTTAATTATTTTATAGTT+GGG | - | chr4_4:52687261-52687280 | Msa0687720:intron | 10.0% |
| !! | CAATTTATAGAAAAAAATTA+TGG | + | chr4_4:52688009-52688028 | None:intergenic | 10.0% |
| !!! | TTTTCTATAAATTGATTATT+AGG | - | chr4_4:52688015-52688034 | Msa0687720:intron | 10.0% |
| !!! | TTTTGTATTTTAATTAGTTA+GGG | + | chr4_4:52688599-52688618 | None:intergenic | 10.0% |
| !!! | TTTTGTATTTTAATTAGTTA+GGG | - | chr4_4:52688599-52688618 | Msa0687720:intron | 10.0% |
| !!! | TTTCTTATGTATTTTTTTAT+TGG | - | chr4_4:52689287-52689306 | Msa0687720:intron | 10.0% |
| !! | GAATATATCAACAAATATAA+TGG | + | chr4_4:52686697-52686716 | None:intergenic | 15.0% |
| !!! | ATTTTGTTGTCTTTTTATTA+TGG | - | chr4_4:52686717-52686736 | Msa0687720:three_prime_UTR | 15.0% |
| !!! | TTTTGTTGTCTTTTTATTAT+GGG | - | chr4_4:52686718-52686737 | Msa0687720:three_prime_UTR | 15.0% |
| !!! | TGAAGATTGAAAATTTTATA+GGG | + | chr4_4:52686835-52686854 | None:intergenic | 15.0% |
| !!! | ATTCATATTTAATTTGTGTT+TGG | - | chr4_4:52687019-52687038 | Msa0687720:intron | 15.0% |
| !!! | ACATAAATTAAGTTGAAAAT+AGG | - | chr4_4:52687117-52687136 | Msa0687720:CDS | 15.0% |
| !!! | CATAAATTAAGTTGAAAATA+GGG | - | chr4_4:52687118-52687137 | Msa0687720:CDS | 15.0% |
| !! | CAAAAAATTGACATATTTAT+AGG | - | chr4_4:52687177-52687196 | Msa0687720:CDS | 15.0% |
| !! | TAATAATATTCAATTGCAAA+TGG | - | chr4_4:52688214-52688233 | Msa0687720:intron | 15.0% |
| !! | AATAATATTCAATTGCAAAT+GGG | - | chr4_4:52688215-52688234 | Msa0687720:intron | 15.0% |
| !!! | TTTGTATTTTAATTAGTTAG+GGG | + | chr4_4:52688600-52688619 | None:intergenic | 15.0% |
| !!! | GTTTTGTATTTTAATTAGTT+AGG | + | chr4_4:52688598-52688617 | None:intergenic | 15.0% |
| !!! | GTTTTGTATTTTAATTAGTT+AGG | - | chr4_4:52688598-52688617 | Msa0687720:intron | 15.0% |
| !!! | TTTGTATTTTAATTAGTTAG+GGG | - | chr4_4:52688600-52688619 | Msa0687720:intron | 15.0% |
| !!! | TAATATTAGTTTTGAAAACT+GGG | + | chr4_4:52688842-52688861 | None:intergenic | 15.0% |
| !!! | TTAATATTAGTTTTGAAAAC+TGG | + | chr4_4:52688843-52688862 | None:intergenic | 15.0% |
| !!! | TTTTTTCAATGATTTAACAT+TGG | + | chr4_4:52689022-52689041 | None:intergenic | 15.0% |
| !! | AAAAAAAATTCTTAGTCTAA+AGG | - | chr4_4:52689036-52689055 | Msa0687720:intron | 15.0% |
| !! | AGTATACTATTGTTAAAAAA+AGG | + | chr4_4:52689324-52689343 | None:intergenic | 15.0% |
| !!! | TGTTATTTAAACTTAAGATA+AGG | - | chr4_4:52689344-52689363 | Msa0687720:intron | 15.0% |
| !! | TAAAATATATAAAGCTACAA+GGG | + | chr4_4:52689651-52689670 | None:intergenic | 15.0% |
| !! | ATAAAATATATAAAGCTACA+AGG | + | chr4_4:52689652-52689671 | None:intergenic | 15.0% |
| !!! | TTGAGTTTATTTTTTTTTTG+TGG | - | chr4_4:52689682-52689701 | Msa0687720:intron | 15.0% |
| !! | TAATGAAATAAGATCTAATT+TGG | - | chr4_4:52689714-52689733 | Msa0687720:intron | 15.0% |
| !! | TTATACAATTAAATAAGGTA+TGG | + | chr4_4:52690487-52690506 | None:intergenic | 15.0% |
| !!! | TTATTATGGGTTTTTTTTGT+AGG | - | chr4_4:52686731-52686750 | Msa0687720:three_prime_UTR | 20.0% |
| !!! | TATTATGGGTTTTTTTTGTA+GGG | - | chr4_4:52686732-52686751 | Msa0687720:three_prime_UTR | 20.0% |
| !! | GAAAAGTTGACATATTTATA+GGG | + | chr4_4:52686775-52686794 | None:intergenic | 20.0% |
| !!! | AGTTGAAAGAAAATTTTAGA+GGG | + | chr4_4:52686806-52686825 | None:intergenic | 20.0% |
| !!! | AAGTTGAAAGAAAATTTTAG+AGG | + | chr4_4:52686807-52686826 | None:intergenic | 20.0% |
| !!! | GTGAAGATTGAAAATTTTAT+AGG | + | chr4_4:52686836-52686855 | None:intergenic | 20.0% |
| !!! | AAATTTTCAATCTTCACTTT+TGG | - | chr4_4:52686839-52686858 | Msa0687720:three_prime_UTR | 20.0% |
| !!! | TATGAGTTTACTTTAAAAGA+GGG | + | chr4_4:52686866-52686885 | None:intergenic | 20.0% |
| !!! | ATATGAGTTTACTTTAAAAG+AGG | + | chr4_4:52686867-52686886 | None:intergenic | 20.0% |
| !!! | TAAAATTTTCCTTCAACTTT+TGG | + | chr4_4:52687145-52687164 | None:intergenic | 20.0% |
| !!! | AAAAGGGTTAAATATGTTTT+TGG | + | chr4_4:52687205-52687224 | None:intergenic | 20.0% |
| !! | AATGATACGTATACAAAAAA+GGG | + | chr4_4:52687221-52687240 | None:intergenic | 20.0% |
| !! | AAATGATACGTATACAAAAA+AGG | + | chr4_4:52687222-52687241 | None:intergenic | 20.0% |
| !! | ACCTAACATATGATTATATA+GGG | + | chr4_4:52687847-52687866 | None:intergenic | 20.0% |
| !! | AACCTAACATATGATTATAT+AGG | + | chr4_4:52687848-52687867 | None:intergenic | 20.0% |
| !! | ATATAATCATATGTTAGGTT+AGG | - | chr4_4:52687848-52687867 | Msa0687720:intron | 20.0% |
| !!! | GATTACTTTGTTATTTCATT+TGG | - | chr4_4:52687940-52687959 | Msa0687720:intron | 20.0% |
| !!! | ATGAATGTTTTTGAGTATTA+TGG | + | chr4_4:52688186-52688205 | None:intergenic | 20.0% |
| !!! | TGGTAGTTGTATTAAATTTT+TGG | - | chr4_4:52688339-52688358 | Msa0687720:intron | 20.0% |
| !!! | TTGTATTTTAATTAGTTAGG+GGG | + | chr4_4:52688601-52688620 | None:intergenic | 20.0% |
| !!! | TTGTATTTTAATTAGTTAGG+GGG | - | chr4_4:52688601-52688620 | Msa0687720:intron | 20.0% |
| !! | AGAATGAGCATAATATTTAA+GGG | - | chr4_4:52688782-52688801 | Msa0687720:intron | 20.0% |
| !!! | TGATTTTCTCTTTTTTCATA+TGG | - | chr4_4:52688940-52688959 | Msa0687720:intron | 20.0% |
| !! | AATACACATTTATACTACAT+GGG | - | chr4_4:52689436-52689455 | Msa0687720:intron | 20.0% |
| !!! | TGAATTGTTCTAGAAATAAT+AGG | - | chr4_4:52689615-52689634 | Msa0687720:intron | 20.0% |
| !! | AAAATATATAAAGCTACAAG+GGG | + | chr4_4:52689650-52689669 | None:intergenic | 20.0% |
| !! | GTCAATAAACAAAAATTATG+TGG | - | chr4_4:52689880-52689899 | Msa0687720:intron | 20.0% |
| !! | TAAAAAAGAAATTGTGATGT+CGG | - | chr4_4:52690226-52690245 | Msa0687720:intron | 20.0% |
| !! | TGTAGGGTTAAATATGTTTT+TGG | - | chr4_4:52686748-52686767 | Msa0687720:three_prime_UTR | 25.0% |
| ! | CGAAAAGTTGACATATTTAT+AGG | + | chr4_4:52686776-52686795 | None:intergenic | 25.0% |
| !! | AAGTTGAAGGAAAATTTTAG+AGG | - | chr4_4:52687146-52687165 | Msa0687720:CDS | 25.0% |
| !! | AGTTGAAGGAAAATTTTAGA+GGG | - | chr4_4:52687147-52687166 | Msa0687720:CDS | 25.0% |
| ! | TCTAAGAGTTCAGTATTTAT+AGG | + | chr4_4:52687704-52687723 | None:intergenic | 25.0% |
| ! | TCCCTATATAATCATATGTT+AGG | - | chr4_4:52687843-52687862 | Msa0687720:intron | 25.0% |
| ! | TACATGAACAACTAATTACA+TGG | + | chr4_4:52687891-52687910 | None:intergenic | 25.0% |
| !!! | TTGCAACTTTTGAAAAGATA+GGG | + | chr4_4:52688384-52688403 | None:intergenic | 25.0% |
| !!! | ATTGCAACTTTTGAAAAGAT+AGG | + | chr4_4:52688385-52688404 | None:intergenic | 25.0% |
| !! | CTTTTCAAAAGTTGCAATTT+TGG | - | chr4_4:52688387-52688406 | Msa0687720:intron | 25.0% |
| ! | GAGAATGAGCATAATATTTA+AGG | - | chr4_4:52688781-52688800 | Msa0687720:intron | 25.0% |
| ! | TTAAACTTAAGATAAGGAAG+TGG | - | chr4_4:52689350-52689369 | Msa0687720:intron | 25.0% |
| ! | GAATACACATTTATACTACA+TGG | - | chr4_4:52689435-52689454 | Msa0687720:intron | 25.0% |
| ! | GCAATTATTAAACACAAAAG+AGG | - | chr4_4:52689493-52689512 | Msa0687720:intron | 25.0% |
| !! | TTCCTTTGGCATAAAATTTT+CGG | + | chr4_4:52689762-52689781 | None:intergenic | 25.0% |
| ! | AAACAAAAATTATGTGGACA+TGG | - | chr4_4:52689886-52689905 | Msa0687720:intron | 25.0% |
| ! | CAAACTTCAAAGATGTATAT+TGG | + | chr4_4:52690027-52690046 | None:intergenic | 25.0% |
| !! | GTATATGTTTTCCAAATTCT+TGG | - | chr4_4:52690168-52690187 | Msa0687720:intron | 25.0% |
| ! | AAAAAAGAAATTGTGATGTC+GGG | - | chr4_4:52690227-52690246 | Msa0687720:intron | 25.0% |
| ! | ATTTGTGTCACAATAATCAT+TGG | + | chr4_4:52690379-52690398 | None:intergenic | 25.0% |
| CAAAAACAATGTCATATACG+TGG | - | chr4_4:52686533-52686552 | Msa0687720:three_prime_UTR | 30.0% | |
| ! | CTTTTCAATAAACGTGTCTT+TGG | - | chr4_4:52687411-52687430 | Msa0687720:intron | 30.0% |
| ! | ATAATTTGCATCTTCCAGTT+GGG | + | chr4_4:52687501-52687520 | None:intergenic | 30.0% |
| !!! | CTTTGTTTTGTAAAGCGATA+AGG | - | chr4_4:52687590-52687609 | Msa0687720:intron | 30.0% |
| AACCAATTTCCCTAAAACTT+AGG | - | chr4_4:52687668-52687687 | Msa0687720:intron | 30.0% | |
| ACCAATTTCCCTAAAACTTA+GGG | - | chr4_4:52687669-52687688 | Msa0687720:intron | 30.0% | |
| ! | GGATAAAAAAGCATGAGAAA+AGG | + | chr4_4:52687826-52687845 | None:intergenic | 30.0% |
| ACCTAGTTTAACCATTCAAT+CGG | - | chr4_4:52688073-52688092 | Msa0687720:intron | 30.0% | |
| TTTAACCATTCAATCGGTTA+GGG | - | chr4_4:52688079-52688098 | Msa0687720:intron | 30.0% | |
| ! | ACAAGCATGTGATATTTTGT+TGG | - | chr4_4:52688158-52688177 | Msa0687720:intron | 30.0% |
| ACTCAAAAACATTCATGTCA+TGG | - | chr4_4:52688190-52688209 | Msa0687720:intron | 30.0% | |
| AATATTCAATTGCAAATGGG+TGG | - | chr4_4:52688218-52688237 | Msa0687720:intron | 30.0% | |
| ACTATATAGCATACCTCTTA+CGG | + | chr4_4:52688281-52688300 | None:intergenic | 30.0% | |
| !!! | TTTTGGCTTAATTGCACTTT+TGG | - | chr4_4:52688356-52688375 | Msa0687720:intron | 30.0% |
| !! | TGCAACTTTTGAAAAGATAG+GGG | + | chr4_4:52688383-52688402 | None:intergenic | 30.0% |
| !!! | TTAGTTTTGAAAACTGGGTT+TGG | + | chr4_4:52688837-52688856 | None:intergenic | 30.0% |
| ! | TATCATTGATGACAAGAACA+TGG | + | chr4_4:52688911-52688930 | None:intergenic | 30.0% |
| TTACGTAGAAGCAACATTTA+TGG | - | chr4_4:52689103-52689122 | Msa0687720:intron | 30.0% | |
| !!! | TGCTTCTTTTTTTCTGTTGA+AGG | - | chr4_4:52689126-52689145 | Msa0687720:intron | 30.0% |
| !!! | CTTTTTTTCTGTTGAAGGAA+TGG | - | chr4_4:52689131-52689150 | Msa0687720:intron | 30.0% |
| TAATTTCACAACTGGTCATT+TGG | - | chr4_4:52689160-52689179 | Msa0687720:intron | 30.0% | |
| ! | CATTTGGTGAAAACCATTTA+TGG | - | chr4_4:52689176-52689195 | Msa0687720:intron | 30.0% |
| AAATAAGACCGAATGATTGA+TGG | + | chr4_4:52689554-52689573 | None:intergenic | 30.0% | |
| ! | TCCTTTGGCATAAAATTTTC+GGG | + | chr4_4:52689761-52689780 | None:intergenic | 30.0% |
| TTATGGTATACAACTTCCTT+TGG | + | chr4_4:52689776-52689795 | None:intergenic | 30.0% | |
| ACAGCTTATCATGTATGTTA+TGG | + | chr4_4:52689793-52689812 | None:intergenic | 30.0% | |
| TGGAAATCATGTTCAACTTT+GGG | + | chr4_4:52689829-52689848 | None:intergenic | 30.0% | |
| ATGGAAATCATGTTCAACTT+TGG | + | chr4_4:52689830-52689849 | None:intergenic | 30.0% | |
| AAAGTTGAACATGATTTCCA+TGG | - | chr4_4:52689829-52689848 | Msa0687720:intron | 30.0% | |
| ! | TATTCCTTATTTGCTTCGTT+TGG | + | chr4_4:52689939-52689958 | None:intergenic | 30.0% |
| CAAATGTGCTTCATATTATG+CGG | - | chr4_4:52690074-52690093 | Msa0687720:intron | 30.0% | |
| GGAATTAGAGATAATGACAA+TGG | - | chr4_4:52690203-52690222 | Msa0687720:intron | 30.0% | |
| !!! | TACTTTTTCTGGTTTCTATC+CGG | + | chr4_4:52690304-52690323 | None:intergenic | 30.0% |
| !! | TAGAAACCAGAAAAAGTATC+CGG | - | chr4_4:52690306-52690325 | Msa0687720:intron | 30.0% |
| GGGTAATGATGTTAATGTCA+AGG | + | chr4_4:52686568-52686587 | None:intergenic | 35.0% | |
| TGACATTAACATCATTACCC+AGG | - | chr4_4:52686568-52686587 | Msa0687720:three_prime_UTR | 35.0% | |
| TTAACATCATTACCCAGGTA+AGG | - | chr4_4:52686573-52686592 | Msa0687720:three_prime_UTR | 35.0% | |
| AATGGTAATAGTCCTTACCT+GGG | + | chr4_4:52686588-52686607 | None:intergenic | 35.0% | |
| TAATGGTAATAGTCCTTACC+TGG | + | chr4_4:52686589-52686608 | None:intergenic | 35.0% | |
| AAATAGGGACCAAAAGTTGA+AGG | - | chr4_4:52687133-52687152 | Msa0687720:CDS | 35.0% | |
| AGACTACAACTTGAGCATAA+AGG | - | chr4_4:52687287-52687306 | Msa0687720:intron | 35.0% | |
| ACAAATATCTTCAACCCAAC+TGG | - | chr4_4:52687484-52687503 | Msa0687720:intron | 35.0% | |
| ! | CATAATTTGCATCTTCCAGT+TGG | + | chr4_4:52687502-52687521 | None:intergenic | 35.0% |
| TTGTAAAGCGATAAGGTCAT+AGG | - | chr4_4:52687597-52687616 | Msa0687720:intron | 35.0% | |
| TACCTCACATTGCAAAGTAT+AGG | - | chr4_4:52687634-52687653 | Msa0687720:intron | 35.0% | |
| !!! | ACCCTAAGTTTTAGGGAAAT+TGG | + | chr4_4:52687673-52687692 | None:intergenic | 35.0% |
| ! | AACCATGATTTTCGAAGGAT+TGG | - | chr4_4:52687755-52687774 | Msa0687720:intron | 35.0% |
| TTCCAATCCTTCGAAAATCA+TGG | + | chr4_4:52687760-52687779 | None:intergenic | 35.0% | |
| ! | ATCATCGATTGATGATACCT+TGG | + | chr4_4:52687803-52687822 | None:intergenic | 35.0% |
| AGGTCAAGACAACAAAGTTA+GGG | + | chr4_4:52688057-52688076 | None:intergenic | 35.0% | |
| TAGGTCAAGACAACAAAGTT+AGG | + | chr4_4:52688058-52688077 | None:intergenic | 35.0% | |
| ACCGATTGAATGGTTAAACT+AGG | + | chr4_4:52688077-52688096 | None:intergenic | 35.0% | |
| GTTTAACCATTCAATCGGTT+AGG | - | chr4_4:52688078-52688097 | Msa0687720:intron | 35.0% | |
| !!! | TTAGGGTTTTGACTTCTTGT+GGG | - | chr4_4:52688096-52688115 | Msa0687720:intron | 35.0% |
| CATATTGCTGGTGATAACAA+AGG | - | chr4_4:52688132-52688151 | Msa0687720:intron | 35.0% | |
| ! | TACGGTATTTAGGATCAACA+AGG | + | chr4_4:52688263-52688282 | None:intergenic | 35.0% |
| TTGATCCTAAATACCGTAAG+AGG | - | chr4_4:52688265-52688284 | Msa0687720:intron | 35.0% | |
| !! | GCAACTTTTGAAAAGATAGG+GGG | + | chr4_4:52688382-52688401 | None:intergenic | 35.0% |
| TGCCAAAGATCCAATACATA+GGG | + | chr4_4:52688571-52688590 | None:intergenic | 35.0% | |
| ! | TATTGGATCTTTGGCAGTTT+TGG | - | chr4_4:52688447-52688466 | Msa0687720:intron | 35.0% |
| ! | TATTGGATCTTTGGCAGTTT+TGG | + | chr4_4:52688447-52688466 | None:intergenic | 35.0% |
| TGCCAAAGATCCAATACATA+AGG | - | chr4_4:52688571-52688590 | Msa0687720:intron | 35.0% | |
| GCCAAAGATCCAATACATAA+GGG | - | chr4_4:52688572-52688591 | Msa0687720:intron | 35.0% | |
| CCAAAGATCCAATACATAAG+GGG | - | chr4_4:52688573-52688592 | Msa0687720:intron | 35.0% | |
| ! | ACAGTTTGAGATTTGTCCTA+CGG | - | chr4_4:52688678-52688697 | Msa0687720:intron | 35.0% |
| !!! | TCGATGACATGGGTTTTTTA+CGG | + | chr4_4:52688763-52688782 | None:intergenic | 35.0% |
| CTACGTAAAATTGCATAGCT+TGG | + | chr4_4:52689091-52689110 | None:intergenic | 35.0% | |
| !!! | GGTGCTTTTAATTTCACAAC+TGG | - | chr4_4:52689152-52689171 | Msa0687720:intron | 35.0% |
| ! | CAGTAAAAGCACACCATAAA+TGG | + | chr4_4:52689192-52689211 | None:intergenic | 35.0% |
| ! | ACTACATGGGTGCTATAAAT+TGG | - | chr4_4:52689449-52689468 | Msa0687720:intron | 35.0% |
| ! | CTACATGGGTGCTATAAATT+GGG | - | chr4_4:52689450-52689469 | Msa0687720:intron | 35.0% |
| ! | TACATGGGTGCTATAAATTG+GGG | - | chr4_4:52689451-52689470 | Msa0687720:intron | 35.0% |
| !! | ATCTAATTTGGTGTTGATGC+AGG | - | chr4_4:52689726-52689745 | Msa0687720:intron | 35.0% |
| CATACATGATAAGCTGTTGT+TGG | - | chr4_4:52689796-52689815 | Msa0687720:intron | 35.0% | |
| AGAACCAAACGAAGCAAATA+AGG | - | chr4_4:52689932-52689951 | Msa0687720:intron | 35.0% | |
| AAGCAAATAAGGAATAGCGT+TGG | - | chr4_4:52689943-52689962 | Msa0687720:intron | 35.0% | |
| GTGGAGACAAATCATAAATC+CGG | - | chr4_4:52690096-52690115 | Msa0687720:intron | 35.0% | |
| TTCTAGCATATGTAGGTATC+CGG | + | chr4_4:52690118-52690137 | None:intergenic | 35.0% | |
| ATATACTGCAATGTGGTATG+GGG | + | chr4_4:52690154-52690173 | None:intergenic | 35.0% | |
| CATATACTGCAATGTGGTAT+GGG | + | chr4_4:52690155-52690174 | None:intergenic | 35.0% | |
| ACATATACTGCAATGTGGTA+TGG | + | chr4_4:52690156-52690175 | None:intergenic | 35.0% | |
| GGAAAACATATACTGCAATG+TGG | + | chr4_4:52690161-52690180 | None:intergenic | 35.0% | |
| ! | CTCTTGTTTGTCCAAGAATT+TGG | + | chr4_4:52690182-52690201 | None:intergenic | 35.0% |
| AATTCTTGGACAAACAAGAG+AGG | - | chr4_4:52690182-52690201 | Msa0687720:intron | 35.0% | |
| TTCCCTAAAACTTAGGGTCA+TGG | - | chr4_4:52687675-52687694 | Msa0687720:intron | 40.0% | |
| ! | GTCCATGACCCTAAGTTTTA+GGG | + | chr4_4:52687680-52687699 | None:intergenic | 40.0% |
| ! | AAAAACACCTTTTGACGAGC+AGG | - | chr4_4:52687723-52687742 | Msa0687720:intron | 40.0% |
| ! | GGCAAAACCATGATTTTCGA+AGG | - | chr4_4:52687750-52687769 | Msa0687720:intron | 40.0% |
| ATGATACCTTGGTTTCCGAA+TGG | + | chr4_4:52687792-52687811 | None:intergenic | 40.0% | |
| CAAAACCCTAACCGATTGAA+TGG | + | chr4_4:52688087-52688106 | None:intergenic | 40.0% | |
| !!! | GTTAGGGTTTTGACTTCTTG+TGG | - | chr4_4:52688095-52688114 | Msa0687720:intron | 40.0% |
| TAGGATCAACAAGGTTGTGA+AGG | + | chr4_4:52688254-52688273 | None:intergenic | 40.0% | |
| GCATACCTCTTACGGTATTT+AGG | + | chr4_4:52688273-52688292 | None:intergenic | 40.0% | |
| CCAAAGATCCAATACATAGG+GGG | + | chr4_4:52688441-52688460 | None:intergenic | 40.0% | |
| GCCAAAGATCCAATACATAG+GGG | + | chr4_4:52688442-52688461 | None:intergenic | 40.0% | |
| CTGCCAAAGATCCAATACAT+AGG | + | chr4_4:52688570-52688589 | None:intergenic | 40.0% | |
| ! | TTAAGTCAAAAGTGGCCTTG+GGG | + | chr4_4:52688474-52688493 | None:intergenic | 40.0% |
| CTTAAGTCAAAAGTGGCCTT+GGG | + | chr4_4:52688475-52688494 | None:intergenic | 40.0% | |
| ACTTAAGTCAAAAGTGGCCT+TGG | + | chr4_4:52688476-52688495 | None:intergenic | 40.0% | |
| CACCTCACTTAAGTCAAAAG+TGG | + | chr4_4:52688482-52688501 | None:intergenic | 40.0% | |
| AGCGAAGACTAAGTCAAAAG+TGG | - | chr4_4:52688532-52688551 | Msa0687720:intron | 40.0% | |
| ACTAAGTCAAAAGTGGCCTT+GGG | - | chr4_4:52688539-52688558 | Msa0687720:intron | 40.0% | |
| CCCCTTATGTATTGGATCTT+TGG | + | chr4_4:52688576-52688595 | None:intergenic | 40.0% | |
| CAAAACAGCCCCTTATGTAT+TGG | + | chr4_4:52688584-52688603 | None:intergenic | 40.0% | |
| CAACAACTGATATTGACCGT+AGG | + | chr4_4:52688697-52688716 | None:intergenic | 40.0% | |
| !!! | GACATGGGTTTTTTACGGTA+TGG | + | chr4_4:52688758-52688777 | None:intergenic | 40.0% |
| ATGCTCATTCTCGATGACAT+GGG | + | chr4_4:52688773-52688792 | None:intergenic | 40.0% | |
| TATGCTCATTCTCGATGACA+TGG | + | chr4_4:52688774-52688793 | None:intergenic | 40.0% | |
| TAATTATGCCACCCACATGA+GGG | + | chr4_4:52689238-52689257 | None:intergenic | 40.0% | |
| ATAATTATGCCACCCACATG+AGG | + | chr4_4:52689239-52689258 | None:intergenic | 40.0% | |
| TAGCGCACTTTCTCTTCATT+TGG | + | chr4_4:52689389-52689408 | None:intergenic | 40.0% | |
| ! | GCCCGAAAATTTTATGCCAA+AGG | - | chr4_4:52689757-52689776 | Msa0687720:intron | 40.0% |
| TTTATTGCACTCTTCGTCCA+TGG | + | chr4_4:52689849-52689868 | None:intergenic | 40.0% | |
| ! | CAAATAAGGAATAGCGTTGG+TGG | - | chr4_4:52689946-52689965 | Msa0687720:intron | 40.0% |
| ATGTGCTTCATATTATGCGG+TGG | - | chr4_4:52690077-52690096 | Msa0687720:intron | 40.0% | |
| CAGCTTCTTCTAGCATATGT+AGG | + | chr4_4:52690125-52690144 | None:intergenic | 40.0% | |
| CTACATATGCTAGAAGAAGC+TGG | - | chr4_4:52690123-52690142 | Msa0687720:intron | 40.0% | |
| ACTTCAATGCTGTCATGCGT+AGG | + | chr4_4:52687326-52687345 | None:intergenic | 45.0% | |
| GGCCTATACTTTGCAATGTG+AGG | + | chr4_4:52687639-52687658 | None:intergenic | 45.0% | |
| !! | GGGAAATTGGTTCGTGATGT+AGG | + | chr4_4:52687660-52687679 | None:intergenic | 45.0% |
| ! | CGTCCATGACCCTAAGTTTT+AGG | + | chr4_4:52687681-52687700 | None:intergenic | 45.0% |
| !!! | GGTTTTGACTTCTTGTGGGA+TGG | - | chr4_4:52688100-52688119 | Msa0687720:intron | 45.0% |
| ! | TTTGACTTCTTGTGGGATGG+AGG | - | chr4_4:52688103-52688122 | Msa0687720:intron | 45.0% |
| TTGACTTCTTGTGGGATGGA+GGG | - | chr4_4:52688104-52688123 | Msa0687720:intron | 45.0% | |
| !! | TGGAGGGAGTATCATATTGC+TGG | - | chr4_4:52688120-52688139 | Msa0687720:intron | 45.0% |
| GAATAGCACACGATACATGC+TGG | - | chr4_4:52688319-52688338 | Msa0687720:intron | 45.0% | |
| CAAAACAGCCCCCTATGTAT+TGG | - | chr4_4:52688430-52688449 | Msa0687720:intron | 45.0% | |
| CCCCCTATGTATTGGATCTT+TGG | - | chr4_4:52688438-52688457 | Msa0687720:intron | 45.0% | |
| ! | TAAGTCAAAAGTGGCCTTGG+GGG | + | chr4_4:52688541-52688560 | None:intergenic | 45.0% |
| !!! | GGCCACTTTTGACTTAAGTG+AGG | - | chr4_4:52688477-52688496 | Msa0687720:intron | 45.0% |
| GACTAAGTCAAAAGTGGCCT+TGG | - | chr4_4:52688538-52688557 | Msa0687720:intron | 45.0% | |
| ! | CTAAGTCAAAAGTGGCCTTG+GGG | - | chr4_4:52688540-52688559 | Msa0687720:intron | 45.0% |
| ! | TAAGTCAAAAGTGGCCTTGG+GGG | - | chr4_4:52688541-52688560 | Msa0687720:intron | 45.0% |
| TTCATATGGTTCATGCGCAG+TGG | - | chr4_4:52688954-52688973 | Msa0687720:intron | 45.0% | |
| AGCTTGGTACACGAAAACGA+TGG | + | chr4_4:52689075-52689094 | None:intergenic | 45.0% | |
| GCATGTGGCCATCAATCATT+CGG | - | chr4_4:52689543-52689562 | Msa0687720:intron | 45.0% | |
| !! | AGGAATAGCGTTGGTGGAAA+AGG | - | chr4_4:52689952-52689971 | Msa0687720:intron | 45.0% |
| !!! | TGCTGTCCGGATACTTTTTC+TGG | + | chr4_4:52690315-52690334 | None:intergenic | 45.0% |
| CTTAGAACTCTGTTGCTGTC+CGG | + | chr4_4:52690328-52690347 | None:intergenic | 45.0% | |
| !!! | AAAAAATTCTAAATTTTTTT+TGG | + | chr4_4:52686951-52686970 | None:intergenic | 5.0% |
| !!! | ATGAATTTTTATATTTTTTA+CGG | - | chr4_4:52686990-52687009 | Msa0687720:intron | 5.0% |
| !! | AAGATTAATATTAAATATAA+TGG | + | chr4_4:52687246-52687265 | None:intergenic | 5.0% |
| !!! | ATAAATAAATTTTTAAAATG+AGG | + | chr4_4:52687441-52687460 | None:intergenic | 5.0% |
| TTGGAACAACCAGCGCCATT+CGG | - | chr4_4:52687774-52687793 | Msa0687720:intron | 50.0% | |
| TGCCACATGTCGACCATTGT+GGG | - | chr4_4:52688500-52688519 | Msa0687720:intron | 50.0% | |
| ! | TGACTTAGTCTTCGCTGACG+TGG | + | chr4_4:52688528-52688547 | None:intergenic | 50.0% |
| CATGCATGCAGTAGCACTAG+TGG | - | chr4_4:52688989-52689008 | Msa0687720:intron | 50.0% | |
| ACACAAGAGTGAGCTGCATG+TGG | - | chr4_4:52689528-52689547 | Msa0687720:intron | 50.0% | |
| ! | GCGTTGGTGGAAAAGGTGAA+AGG | - | chr4_4:52689959-52689978 | Msa0687720:intron | 50.0% |
| ACTCGATTCCTACCAGCACA+AGG | - | chr4_4:52690273-52690292 | Msa0687720:intron | 50.0% | |
| !! | CTACCAGCACAAGGAGTATC+CGG | - | chr4_4:52690282-52690301 | Msa0687720:intron | 50.0% |
| TATCCGGATACTCCTTGTGC+TGG | + | chr4_4:52690288-52690307 | None:intergenic | 50.0% | |
| ! | ACCTTTTGACGAGCAGGCGA+AGG | - | chr4_4:52687729-52687748 | Msa0687720:intron | 55.0% |
| !! | TTTGGCAGTTTTGGCCCCCA+AGG | - | chr4_4:52688456-52688475 | Msa0687720:intron | 55.0% |
| GTGCCACATGTCGACCATTG+TGG | - | chr4_4:52688499-52688518 | Msa0687720:intron | 55.0% | |
| CACCCACAATGGTCGACATG+TGG | + | chr4_4:52688505-52688524 | None:intergenic | 55.0% | |
| !! | TTTGGCAGTTTTGGCCCCCA+AGG | + | chr4_4:52688456-52688475 | None:intergenic | 55.0% |
| CATGCAGTAGCACTAGTGGC+TGG | - | chr4_4:52688993-52689012 | Msa0687720:intron | 55.0% | |
| ! | TGATGATGCCAGCCCTCATG+TGG | - | chr4_4:52689223-52689242 | Msa0687720:intron | 55.0% |
| GATGATGCCAGCCCTCATGT+GGG | - | chr4_4:52689224-52689243 | Msa0687720:intron | 55.0% | |
| ! | CGGATACTCCTTGTGCTGGT+AGG | + | chr4_4:52690284-52690303 | None:intergenic | 55.0% |
| GCCTTCGCCTGCTCGTCAAA+AGG | + | chr4_4:52687733-52687752 | None:intergenic | 60.0% | |
| CCTTGGTTTCCGAATGGCGC+TGG | + | chr4_4:52687786-52687805 | None:intergenic | 60.0% | |
| CCAGCGCCATTCGGAAACCA+AGG | - | chr4_4:52687783-52687802 | Msa0687720:intron | 60.0% | |
| TATGCCACCCACATGAGGGC+TGG | + | chr4_4:52689234-52689253 | None:intergenic | 60.0% | |
| CGCTGACGTGGCACCCACAA+TGG | + | chr4_4:52688516-52688535 | None:intergenic | 65.0% | |
| GATGCCAGCCCTCATGTGGG+TGG | - | chr4_4:52689227-52689246 | Msa0687720:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 52686498 | 52690509 | 52686498 | ID=Msa0687720;Name=Msa0687720 |
| chr4_4 | mRNA | 52686498 | 52690509 | 52686498 | ID=Msa0687720-mRNA-1;Parent=Msa0687720;Name=Msa0687720-mRNA-1;_AED=0.35;_eAED=0.35;_QI=0|0.5|0.66|0.66|0|0|3|467|98 |
| chr4_4 | exon | 52686498 | 52686943 | 52686498 | ID=Msa0687720-mRNA-1:exon:13928;Parent=Msa0687720-mRNA-1 |
| chr4_4 | exon | 52687034 | 52687259 | 52687034 | ID=Msa0687720-mRNA-1:exon:13927;Parent=Msa0687720-mRNA-1 |
| chr4_4 | exon | 52690418 | 52690509 | 52690418 | ID=Msa0687720-mRNA-1:exon:13926;Parent=Msa0687720-mRNA-1 |
| chr4_4 | CDS | 52690418 | 52690509 | 52690418 | ID=Msa0687720-mRNA-1:cds;Parent=Msa0687720-mRNA-1 |
| chr4_4 | CDS | 52687055 | 52687259 | 52687055 | ID=Msa0687720-mRNA-1:cds;Parent=Msa0687720-mRNA-1 |
| chr4_4 | three_prime_UTR | 52687034 | 52687054 | 52687034 | ID=Msa0687720-mRNA-1:three_prime_utr;Parent=Msa0687720-mRNA-1 |
| chr4_4 | three_prime_UTR | 52686498 | 52686943 | 52686498 | ID=Msa0687720-mRNA-1:three_prime_utr;Parent=Msa0687720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
