Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0689350 | XP_013443975.1 | 97.921 | 433 | 9 | 0 | 1 | 433 | 1 | 433 | 0.0 | 868 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0689350 | A0A072TKP9 | 97.921 | 433 | 9 | 0 | 1 | 433 | 1 | 433 | 0.0 | 868 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0689350 | Msa1229740 | 0.963197 | 8.607714e-122 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0689350 | MtrunA17_Chr8g0337321 | 93.995 | 433 | 9 | 1 | 1 | 433 | 1 | 416 | 0.0 | 825 |
| Msa0689350 | MtrunA17_Chr3g0140721 | 39.207 | 454 | 239 | 12 | 1 | 427 | 1 | 444 | 2.03e-91 | 284 |
| Msa0689350 | MtrunA17_Chr6g0487371 | 38.235 | 442 | 232 | 11 | 1 | 429 | 1 | 414 | 1.17e-84 | 265 |
| Msa0689350 | MtrunA17_Chr5g0393941 | 36.283 | 452 | 230 | 12 | 1 | 430 | 64 | 479 | 1.17e-78 | 251 |
| Msa0689350 | MtrunA17_Chr8g0389691 | 45.178 | 197 | 82 | 4 | 235 | 427 | 2 | 176 | 2.26e-43 | 150 |
| Msa0689350 | MtrunA17_Chr8g0389701 | 38.532 | 109 | 64 | 2 | 95 | 203 | 53 | 158 | 1.50e-14 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0689350 | AT5G17640.1 | 73.349 | 424 | 103 | 6 | 1 | 420 | 1 | 418 | 0.0 | 597 |
| Msa0689350 | AT1G10020.1 | 39.262 | 461 | 238 | 13 | 1 | 427 | 1 | 453 | 2.22e-90 | 281 |
| Msa0689350 | AT4G29310.1 | 39.636 | 439 | 227 | 10 | 1 | 427 | 1 | 413 | 3.26e-89 | 277 |
| Msa0689350 | AT3G19680.1 | 34.747 | 495 | 246 | 13 | 1 | 430 | 1 | 483 | 8.78e-74 | 239 |
| Msa0689350 | AT1G50040.1 | 36.229 | 472 | 241 | 15 | 1 | 431 | 1 | 453 | 1.90e-67 | 222 |
| Msa0689350 | AT4G29310.2 | 38.507 | 335 | 183 | 8 | 1 | 323 | 1 | 324 | 1.27e-60 | 200 |
Find 137 sgRNAs with CRISPR-Local
Find 289 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCTACTCATTTCAGCTTT+TGG | 0.241096 | 4_4:-56401788 | Msa0689350:five_prime_UTR |
| TTTCAATGTTGCTGTGCTTT+TGG | 0.250928 | 4_4:+56401974 | None:intergenic |
| GGTTTCCCTTCACCCCATTC+AGG | 0.254809 | 4_4:+56399543 | None:intergenic |
| TTCCATCTTCAGGTTGTGAT+TGG | 0.257792 | 4_4:-56398357 | Msa0689350:CDS |
| GGAATTCAACACTGCTATAA+AGG | 0.273384 | 4_4:-56401767 | Msa0689350:intron |
| ACTCCATTTGTTCCATCTTC+AGG | 0.295514 | 4_4:-56398367 | Msa0689350:CDS |
| TGGATCCCCAGGCCTTTATT+AGG | 0.311476 | 4_4:-56399917 | Msa0689350:CDS |
| TAGGTTGTCGATAGGCTCTC+TGG | 0.312333 | 4_4:-56399898 | Msa0689350:CDS |
| ACCAAAGTCTCCGCTACTTT+GGG | 0.330454 | 4_4:+56398057 | None:intergenic |
| CTATAATCCTCATGCATGTT+TGG | 0.342455 | 4_4:-56399655 | Msa0689350:CDS |
| ATTGTGGAGTTGGTGTTAAA+AGG | 0.354539 | 4_4:-56399599 | Msa0689350:CDS |
| GAACCGAACACTGGAAAATC+TGG | 0.358986 | 4_4:-56399855 | Msa0689350:CDS |
| GATCAGTCGTGACAAGTATA+TGG | 0.365855 | 4_4:-56399937 | Msa0689350:exon |
| TTTGGTTGCAAATGCTTTGT+AGG | 0.376814 | 4_4:+56401992 | None:intergenic |
| CTAAACTTGCAACTGAAGAT+TGG | 0.389372 | 4_4:+56399342 | None:intergenic |
| TCAAACCGGAACACGTATCT+AGG | 0.390399 | 4_4:+56399420 | None:intergenic |
| TCCCCACGGCTGCCAGCTCT+CGG | 0.391454 | 4_4:+56398276 | None:intergenic |
| CTTCAGTTGCAAGTTTAGTA+AGG | 0.396399 | 4_4:-56399337 | Msa0689350:CDS |
| GACATTTCTGACTTAGAATC+CGG | 0.396894 | 4_4:-56398466 | Msa0689350:CDS |
| GCCTATCGACAACCTAATAA+AGG | 0.397474 | 4_4:+56399905 | None:intergenic |
| CACCAAAGTCTCCGCTACTT+TGG | 0.403157 | 4_4:+56398056 | None:intergenic |
| CTACTTTGGGGACTAGGTAT+TGG | 0.403650 | 4_4:+56398070 | None:intergenic |
| TTTAACGGATGGACATGTAT+TGG | 0.403761 | 4_4:-56399510 | Msa0689350:CDS |
| TCTCCGCTACTTTGGGGACT+AGG | 0.411180 | 4_4:+56398064 | None:intergenic |
| CTGATCCTAGATACGTGTTC+CGG | 0.418994 | 4_4:-56399425 | Msa0689350:CDS |
| CGCAATGCCAGCTGTACTAA+TGG | 0.422674 | 4_4:+56397965 | None:intergenic |
| AATTCATATAAATGCCGAAA+AGG | 0.425545 | 4_4:-56398152 | Msa0689350:CDS |
| CTTCTGATCTTCCTTCGAAA+AGG | 0.428055 | 4_4:+56397863 | None:intergenic |
| TTTAACTTTCAAATGCAATT+CGG | 0.430158 | 4_4:+56399455 | None:intergenic |
| GTCATGAGCTGTAGAGTTCA+AGG | 0.432518 | 4_4:-56398007 | Msa0689350:CDS |
| AAATGCAGGTTGGCCCTGAA+TGG | 0.434195 | 4_4:-56399557 | Msa0689350:CDS |
| AAGAATGGAGACAGATTTGT+TGG | 0.437841 | 4_4:-56401953 | Msa0689350:five_prime_UTR |
| GGAGGATGCTGCCATCTTCA+TGG | 0.442367 | 4_4:-56397927 | Msa0689350:CDS |
| GTGAAGATACATGATCTATC+TGG | 0.443249 | 4_4:-56398418 | Msa0689350:CDS |
| CAACCTGAAGATGGAACAAA+TGG | 0.444232 | 4_4:+56398364 | None:intergenic |
| TTCAAATGCAATTCGGCACC+TGG | 0.448516 | 4_4:+56399462 | None:intergenic |
| TCCCTTCTTCCCTGAAAATA+CGG | 0.451160 | 4_4:+56399626 | None:intergenic |
| CATGAGAACTGTGGCTTCTA+CGG | 0.453039 | 4_4:-56398098 | Msa0689350:CDS |
| CACTGAGTCCGGTTGTTGGA+GGG | 0.453922 | 4_4:-56398033 | Msa0689350:CDS |
| ATGACAAACCCTCCAACAAC+CGG | 0.456528 | 4_4:+56398025 | None:intergenic |
| GCACAGCAACATTGAAAGAA+TGG | 0.457187 | 4_4:-56401968 | Msa0689350:five_prime_UTR |
| CGAACAATCAACCAAGCTCC+TGG | 0.461063 | 4_4:+56398319 | None:intergenic |
| AGACTTTGGTGCACTGAGTC+CGG | 0.461560 | 4_4:-56398044 | Msa0689350:CDS |
| TTAAAAGCGTTGTTAGCTCC+TGG | 0.463507 | 4_4:-56399684 | Msa0689350:CDS |
| TATTTGACAAACAAGGCTAA+TGG | 0.468098 | 4_4:-56397825 | Msa0689350:exon |
| ACAAACAAGGCTAATGGTAA+TGG | 0.472418 | 4_4:-56397819 | Msa0689350:three_prime_UTR |
| TCCATCTTCAGGTTGTGATT+GGG | 0.472477 | 4_4:-56398356 | Msa0689350:CDS |
| GGGACTGATGATGTTTGAAC+AGG | 0.472804 | 4_4:+56399780 | None:intergenic |
| GGTGCACTGAGTCCGGTTGT+TGG | 0.478743 | 4_4:-56398037 | Msa0689350:CDS |
| CGACAACCTAATAAAGGCCT+GGG | 0.480173 | 4_4:+56399911 | None:intergenic |
| GTTTCCCTTCACCCCATTCA+GGG | 0.481122 | 4_4:+56399544 | None:intergenic |
| TCGACAACCTAATAAAGGCC+TGG | 0.481266 | 4_4:+56399910 | None:intergenic |
| CCCCAAAGTAGCGGAGACTT+TGG | 0.482551 | 4_4:-56398058 | Msa0689350:CDS |
| TCCGGGAGGAGAGAGAGAAA+AGG | 0.486246 | 4_4:-56398448 | Msa0689350:CDS |
| GATCCGAGAGCTGGCAGCCG+TGG | 0.487143 | 4_4:-56398279 | Msa0689350:CDS |
| AACTTCGGCAGAGGTTATCA+AGG | 0.487315 | 4_4:+56399758 | None:intergenic |
| ATTGCCTCCATCTTGAGGTT+CGG | 0.487757 | 4_4:+56398189 | None:intergenic |
| GGAAGATCAGAAGAGGGATT+CGG | 0.491187 | 4_4:-56397853 | Msa0689350:CDS |
| GAGAGAGAGAAAAGGGTGGA+AGG | 0.491297 | 4_4:-56398440 | Msa0689350:CDS |
| CCGGGAGGAGAGAGAGAAAA+GGG | 0.498010 | 4_4:-56398447 | Msa0689350:CDS |
| CGGAACACGTATCTAGGATC+AGG | 0.500149 | 4_4:+56399426 | None:intergenic |
| CTCGTTGAGCACATACTGGT+CGG | 0.500573 | 4_4:-56398497 | Msa0689350:CDS |
| TGCGGCAAGTGCCATGAAGA+TGG | 0.500784 | 4_4:+56397916 | None:intergenic |
| GTTGGCCCTGAATGGGGTGA+AGG | 0.501092 | 4_4:-56399549 | Msa0689350:CDS |
| AAGGGATCTCATTGTGGAGT+TGG | 0.502031 | 4_4:-56399609 | Msa0689350:CDS |
| TCGGATCTACCAACCACATC+GGG | 0.502382 | 4_4:+56398295 | None:intergenic |
| CAAGATCCAACCCAGGAGCT+TGG | 0.503040 | 4_4:-56398330 | Msa0689350:CDS |
| ATGTATTGGCAAGAACAAAC+AGG | 0.506986 | 4_4:-56399496 | Msa0689350:CDS |
| CTTGAGGTTCGGATAGAAGA+TGG | 0.507376 | 4_4:+56398200 | None:intergenic |
| GTTGCAAGTTTAGTAAGGAC+AGG | 0.508269 | 4_4:-56399332 | Msa0689350:intron |
| GGCAAGAACAAACAGGAGAA+TGG | 0.510514 | 4_4:-56399489 | Msa0689350:CDS |
| ATTCATATAAATGCCGAAAA+GGG | 0.511316 | 4_4:-56398151 | Msa0689350:CDS |
| AATGCAGGTTGGCCCTGAAT+GGG | 0.514543 | 4_4:-56399556 | Msa0689350:CDS |
| ACCCAATCACAACCTGAAGA+TGG | 0.516099 | 4_4:+56398355 | None:intergenic |
| GCCTTTATTAGGTTGTCGAT+AGG | 0.516364 | 4_4:-56399906 | Msa0689350:CDS |
| GTTTGTGAGATACGACTTCG+AGG | 0.518240 | 4_4:-56399807 | Msa0689350:CDS |
| ATGTTGTTATATCTTCAAAC+CGG | 0.520294 | 4_4:+56399406 | None:intergenic |
| TGGTAAACCATTAGTACAGC+TGG | 0.521217 | 4_4:-56397972 | Msa0689350:CDS |
| AAAATTGATACTTGAAGAAG+GGG | 0.523445 | 4_4:+56401810 | None:intergenic |
| TCTCTGGGTTTGAGAAGTAC+TGG | 0.531608 | 4_4:-56399882 | Msa0689350:CDS |
| CTTGAAGCATGGCGCGAGCG+TGG | 0.532811 | 4_4:-56398250 | Msa0689350:CDS |
| ATCCGAGAGCTGGCAGCCGT+GGG | 0.537636 | 4_4:-56398278 | Msa0689350:CDS |
| GGTGTTAAAAGGCAGCAAAT+CGG | 0.539455 | 4_4:-56399588 | Msa0689350:CDS |
| AGGTTGTCGATAGGCTCTCT+GGG | 0.543318 | 4_4:-56399897 | Msa0689350:CDS |
| TTGGCCCTGAATGGGGTGAA+GGG | 0.544814 | 4_4:-56399548 | Msa0689350:CDS |
| TTGACTCGTTGAGCACATAC+TGG | 0.554206 | 4_4:-56398501 | Msa0689350:CDS |
| GATTCTAAGTCAGAAATGTC+AGG | 0.555492 | 4_4:+56398469 | None:intergenic |
| CTTCTATCCGAACCTCAAGA+TGG | 0.556068 | 4_4:-56398196 | Msa0689350:CDS |
| GCACTGAGTCCGGTTGTTGG+AGG | 0.556371 | 4_4:-56398034 | Msa0689350:CDS |
| TTCGAAGGAAGATCAGAAGA+GGG | 0.558928 | 4_4:-56397859 | Msa0689350:CDS |
| TCGTTGAGCACATACTGGTC+GGG | 0.560757 | 4_4:-56398496 | Msa0689350:CDS |
| AGAAGATTGCCTCCATCTTG+AGG | 0.562373 | 4_4:+56398184 | None:intergenic |
| AATCAACCAAGCTCCTGGGT+TGG | 0.563544 | 4_4:+56398324 | None:intergenic |
| TGACAAGTATATGGATCCCC+AGG | 0.575787 | 4_4:-56399928 | Msa0689350:exon |
| AGCTGTAGAGTTCAAGGTGA+AGG | 0.578146 | 4_4:-56398001 | Msa0689350:CDS |
| ACTGGAATTGAACCGAACAC+TGG | 0.584986 | 4_4:-56399864 | Msa0689350:CDS |
| TGGTTGGTAGATCCGAGAGC+TGG | 0.587077 | 4_4:-56398288 | Msa0689350:CDS |
| CATGCTTCAAGCTTTCCCCA+CGG | 0.589453 | 4_4:+56398262 | None:intergenic |
| CGTGGGGAAAGCTTGAAGCA+TGG | 0.596348 | 4_4:-56398261 | Msa0689350:CDS |
| AGATCACGAGGACAAGAAGA+AGG | 0.597587 | 4_4:+56401900 | None:intergenic |
| ATTACATCAATGAAAAGCAA+AGG | 0.598757 | 4_4:+56397785 | None:intergenic |
| ACATTTCTGACTTAGAATCC+GGG | 0.603126 | 4_4:-56398465 | Msa0689350:CDS |
| ATCACGTATAACTTCGGCAG+AGG | 0.604581 | 4_4:+56399749 | None:intergenic |
| CATATAAATGCCGAAAAGGG+TGG | 0.606361 | 4_4:-56398148 | Msa0689350:CDS |
| GAACAATCAACCAAGCTCCT+GGG | 0.607466 | 4_4:+56398320 | None:intergenic |
| TTTCGAAGGAAGATCAGAAG+AGG | 0.610704 | 4_4:-56397860 | Msa0689350:CDS |
| CTGTGTATCACGTATAACTT+CGG | 0.610865 | 4_4:+56399743 | None:intergenic |
| ATTGTTCGTCCCGATGTGGT+TGG | 0.613008 | 4_4:-56398304 | Msa0689350:CDS |
| AACAAATGGAGTTGTTATGA+AGG | 0.614304 | 4_4:+56398378 | None:intergenic |
| CTGAGAGTGCACAGATCACG+AGG | 0.620566 | 4_4:+56401888 | None:intergenic |
| GGAACTCTATTTGACAAACA+AGG | 0.622049 | 4_4:-56397832 | Msa0689350:exon |
| GCTTGCATGCCTCAATGCTG+AGG | 0.626470 | 4_4:+56397885 | None:intergenic |
| AGCTGTTGACCTCAGCATTG+AGG | 0.627543 | 4_4:-56397894 | Msa0689350:CDS |
| ACTTCGGCAGAGGTTATCAA+GGG | 0.632357 | 4_4:+56399759 | None:intergenic |
| CCTCAGATAGTTCTGCTGCA+AGG | 0.634975 | 4_4:-56399378 | Msa0689350:CDS |
| CTCGGATCTACCAACCACAT+CGG | 0.640213 | 4_4:+56398294 | None:intergenic |
| AAACAGGAGAATGGAAAACC+AGG | 0.643217 | 4_4:-56399480 | Msa0689350:CDS |
| GGGAAGAAGGGATCTCATTG+TGG | 0.645030 | 4_4:-56399615 | Msa0689350:CDS |
| CCAAAGTCTCCGCTACTTTG+GGG | 0.645734 | 4_4:+56398058 | None:intergenic |
| CCTTGCAGCAGAACTATCTG+AGG | 0.650920 | 4_4:+56399378 | None:intergenic |
| GTTGATTGTTCGTCCCGATG+TGG | 0.653420 | 4_4:-56398308 | Msa0689350:CDS |
| CTATCCGAACCTCAAGATGG+AGG | 0.654553 | 4_4:-56398193 | Msa0689350:CDS |
| GGAGGAGAGAGAGAAAAGGG+TGG | 0.657083 | 4_4:-56398444 | Msa0689350:CDS |
| TAGTACCATAGATAAAATGA+CGG | 0.658183 | 4_4:-56399959 | Msa0689350:five_prime_UTR |
| ATACCTAGTCCCCAAAGTAG+CGG | 0.662442 | 4_4:-56398067 | Msa0689350:CDS |
| TCCGAGAGCTGGCAGCCGTG+GGG | 0.668783 | 4_4:-56398277 | Msa0689350:CDS |
| GCGATCTCCAAACATGCATG+AGG | 0.673993 | 4_4:+56399648 | None:intergenic |
| ATTGCGACACGTGACGTGCG+TGG | 0.677610 | 4_4:-56397948 | Msa0689350:CDS |
| ATGCAGGTTGGCCCTGAATG+GGG | 0.680133 | 4_4:-56399555 | Msa0689350:CDS |
| AATGCTGAGGTCAACAGCTG+CGG | 0.681482 | 4_4:+56397898 | None:intergenic |
| TGAGGATTATAGAAACAACC+AGG | 0.699777 | 4_4:+56399666 | None:intergenic |
| TGGGTTGCAAGATCCAACCC+AGG | 0.701236 | 4_4:-56398337 | Msa0689350:CDS |
| GTTCAAGGTGAAGGAAAGCG+TGG | 0.702926 | 4_4:-56397992 | Msa0689350:CDS |
| CTTCGGCAGAGGTTATCAAG+GGG | 0.718907 | 4_4:+56399760 | None:intergenic |
| TTTCTGACTTAGAATCCGGG+AGG | 0.722320 | 4_4:-56398462 | Msa0689350:CDS |
| GACAACCTAATAAAGGCCTG+GGG | 0.731055 | 4_4:+56399912 | None:intergenic |
| GCGACACGTGACGTGCGTGG+AGG | 0.761972 | 4_4:-56397945 | Msa0689350:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACATGTATAAAAAATTAAA+AGG | + | chr4_4:56397960-56397979 | None:intergenic | 10.0% |
| !! | AATTTAATTACAGAAAATAA+GGG | + | chr4_4:56398897-56398916 | None:intergenic | 10.0% |
| !! | TAATTTAATTACAGAAAATA+AGG | + | chr4_4:56398898-56398917 | None:intergenic | 10.0% |
| !! | TTAAATTAAATTTCAAAACA+AGG | - | chr4_4:56398910-56398929 | Msa0689350:intron | 10.0% |
| !! | GCAAAAAAAAATTAAAAAAA+TGG | - | chr4_4:56400585-56400604 | Msa0689350:intron | 10.0% |
| !!! | TTTTCTAACATTTCATTTAT+TGG | - | chr4_4:56399069-56399088 | Msa0689350:intron | 15.0% |
| !! | CAATAATACTATATGTATAT+CGG | + | chr4_4:56399106-56399125 | None:intergenic | 15.0% |
| !!! | ACTTTTTTTTTTCTTATCTA+TGG | - | chr4_4:56399248-56399267 | Msa0689350:intron | 15.0% |
| !!! | CTTTTTTTTTTCTTATCTAT+GGG | - | chr4_4:56399249-56399268 | Msa0689350:intron | 15.0% |
| !!! | AAAGTGATTAATTTTATAGT+AGG | + | chr4_4:56400537-56400556 | None:intergenic | 15.0% |
| !!! | CATACATTTTATTAACATTT+TGG | + | chr4_4:56401047-56401066 | None:intergenic | 15.0% |
| !! | AAAAATTGATACTTGAAGAA+GGG | + | chr4_4:56397825-56397844 | None:intergenic | 20.0% |
| !! | AAAAGAGTCAAATAACTTAT+GGG | + | chr4_4:56398724-56398743 | None:intergenic | 20.0% |
| !! | AAAAAGAGTCAAATAACTTA+TGG | + | chr4_4:56398725-56398744 | None:intergenic | 20.0% |
| !! | TTAATATGTATAAAGACCTT+AGG | + | chr4_4:56398970-56398989 | None:intergenic | 20.0% |
| !!! | AAACCTATGATTCTTTTTAA+CGG | - | chr4_4:56400106-56400125 | Msa0689350:intron | 20.0% |
| !!! | TTTAACTTTCAAATGCAATT+CGG | + | chr4_4:56400179-56400198 | None:intergenic | 20.0% |
| !!! | GCATTCAAATTTTAAAATCA+AGG | - | chr4_4:56400394-56400413 | Msa0689350:intron | 20.0% |
| !!! | TTATGATAATGGTGAATATA+CGG | - | chr4_4:56400763-56400782 | Msa0689350:intron | 20.0% |
| !!! | TTTGATAGTTATTAAATGAC+AGG | - | chr4_4:56401097-56401116 | Msa0689350:intron | 20.0% |
| !!! | TTGATAGTTATTAAATGACA+GGG | - | chr4_4:56401098-56401117 | Msa0689350:intron | 20.0% |
| ! | AAAATTGATACTTGAAGAAG+GGG | + | chr4_4:56397824-56397843 | None:intergenic | 25.0% |
| ! | CAAAAATTGATACTTGAAGA+AGG | + | chr4_4:56397826-56397845 | None:intergenic | 25.0% |
| !!! | AAAAAGAACGGATTTTTAAG+TGG | + | chr4_4:56397920-56397939 | None:intergenic | 25.0% |
| !! | AAAGTGTCAGAAAAAAAGAA+CGG | + | chr4_4:56397932-56397951 | None:intergenic | 25.0% |
| ! | CATGTATATGTTTATGTTAG+AGG | - | chr4_4:56397974-56397993 | Msa0689350:CDS | 25.0% |
| ! | TATATGTTTATGTTAGAGGT+TGG | - | chr4_4:56397978-56397997 | Msa0689350:CDS | 25.0% |
| !! | AGTTAGTTGAATTTGCATTT+TGG | - | chr4_4:56398027-56398046 | Msa0689350:CDS | 25.0% |
| !! | GTTTTGTCTGATACTATTTA+TGG | - | chr4_4:56398156-56398175 | Msa0689350:CDS | 25.0% |
| !! | GTTAAAACACATTTTTCACT+TGG | - | chr4_4:56398187-56398206 | Msa0689350:CDS | 25.0% |
| ! | AAATTATTCACTCATCAGAT+AGG | - | chr4_4:56398435-56398454 | Msa0689350:CDS | 25.0% |
| ! | TATGTCAATCATAGTTAGAT+AGG | - | chr4_4:56398515-56398534 | Msa0689350:CDS | 25.0% |
| ! | ATGTCAATCATAGTTAGATA+GGG | - | chr4_4:56398516-56398535 | Msa0689350:intron | 25.0% |
| !! | GTTAGCTCAAATTTGTTTAA+AGG | + | chr4_4:56398701-56398720 | None:intergenic | 25.0% |
| ! | AAAGAGTCAAATAACTTATG+GGG | + | chr4_4:56398723-56398742 | None:intergenic | 25.0% |
| ! | AATTTGAGAAAACTTATGTG+AGG | - | chr4_4:56398804-56398823 | Msa0689350:intron | 25.0% |
| !!! | AAACTTTTTAACTTGCTAAC+TGG | + | chr4_4:56399187-56399206 | None:intergenic | 25.0% |
| ! | AAACCTAACCTATCATAAAA+TGG | - | chr4_4:56399280-56399299 | Msa0689350:intron | 25.0% |
| ! | AACCTAACCTATCATAAAAT+GGG | - | chr4_4:56399281-56399300 | Msa0689350:intron | 25.0% |
| !! | TAAAGATCCCATTTTATGAT+AGG | + | chr4_4:56399291-56399310 | None:intergenic | 25.0% |
| ! | AGTTCTGTCTTATATTTAAC+AGG | - | chr4_4:56399629-56399648 | Msa0689350:CDS | 25.0% |
| ! | TAGTACCATAGATAAAATGA+CGG | - | chr4_4:56399672-56399691 | Msa0689350:CDS | 25.0% |
| ! | ATGTTGTTATATCTTCAAAC+CGG | + | chr4_4:56400228-56400247 | None:intergenic | 25.0% |
| ! | ACAAATCAATATCTTTCACT+TGG | - | chr4_4:56400737-56400756 | Msa0689350:intron | 25.0% |
| ! | AATATACGGTAAGGTTAATT+TGG | - | chr4_4:56400777-56400796 | Msa0689350:intron | 25.0% |
| ! | AATTCATATAAATGCCGAAA+AGG | - | chr4_4:56401479-56401498 | Msa0689350:intron | 25.0% |
| ! | ATTCATATAAATGCCGAAAA+GGG | - | chr4_4:56401480-56401499 | Msa0689350:intron | 25.0% |
| ! | ATTACATCAATGAAAAGCAA+AGG | + | chr4_4:56401849-56401868 | None:intergenic | 25.0% |
| TGATATGAAAAATGAAGCAG+TGG | + | chr4_4:56397781-56397800 | None:intergenic | 30.0% | |
| !!! | AAAGGTGAGATTTTTTCATC+TGG | - | chr4_4:56397882-56397901 | Msa0689350:CDS | 30.0% |
| !!! | AAGGTGAGATTTTTTCATCT+GGG | - | chr4_4:56397883-56397902 | Msa0689350:CDS | 30.0% |
| ! | TAGTTGAATTTGCATTTTGG+TGG | - | chr4_4:56398030-56398049 | Msa0689350:CDS | 30.0% |
| !! | TAGGGTATTTGAGTTTGTTA+TGG | - | chr4_4:56398363-56398382 | Msa0689350:CDS | 30.0% |
| !! | GTATTTGAGTTTGTTATGGT+TGG | - | chr4_4:56398367-56398386 | Msa0689350:CDS | 30.0% |
| !! | TCAATTTCTAGAGTTTGTTG+TGG | - | chr4_4:56398391-56398410 | Msa0689350:CDS | 30.0% |
| ! | CATTACTTGATAGTTTCACA+TGG | - | chr4_4:56398473-56398492 | Msa0689350:CDS | 30.0% |
| ! | GAAACATGTGATAGAAGTTT+TGG | - | chr4_4:56398649-56398668 | Msa0689350:intron | 30.0% |
| !!! | TAGAAGTTTTGGATGAAAAG+AGG | - | chr4_4:56398660-56398679 | Msa0689350:intron | 30.0% |
| !!! | AGAAGTTTTGGATGAAAAGA+GGG | - | chr4_4:56398661-56398680 | Msa0689350:intron | 30.0% |
| AGATGAAACAACATGAACTT+TGG | + | chr4_4:56398772-56398791 | None:intergenic | 30.0% | |
| GATAAAGTTCAAAGTCATGA+TGG | + | chr4_4:56398873-56398892 | None:intergenic | 30.0% | |
| GTATAAAGACCTTAGGTTTA+TGG | + | chr4_4:56398963-56398982 | None:intergenic | 30.0% | |
| CTATATGTATATCGGTATGT+TGG | + | chr4_4:56399098-56399117 | None:intergenic | 30.0% | |
| TTAAATGCAGACTGTGATTA+AGG | - | chr4_4:56399207-56399226 | Msa0689350:intron | 30.0% | |
| TTTCTTATCTATGGGTTCTA+AGG | - | chr4_4:56399257-56399276 | Msa0689350:intron | 30.0% | |
| ! | ATCCCATTTTATGATAGGTT+AGG | + | chr4_4:56399286-56399305 | None:intergenic | 30.0% |
| !! | GTTGATGGTTATTTGTTGAA+GGG | - | chr4_4:56399353-56399372 | Msa0689350:CDS | 30.0% |
| CAAATGCAATGTAACTACAA+TGG | + | chr4_4:56399385-56399404 | None:intergenic | 30.0% | |
| CCAAAAAAAAGAGAGATCAA+AGG | + | chr4_4:56399433-56399452 | None:intergenic | 30.0% | |
| !!! | CCTTTGATCTCTCTTTTTTT+TGG | - | chr4_4:56399430-56399449 | Msa0689350:CDS | 30.0% |
| !!! | TTGATCTCTCTTTTTTTTGG+TGG | - | chr4_4:56399433-56399452 | Msa0689350:CDS | 30.0% |
| TGCATAAAATATGCAAAGTC+CGG | + | chr4_4:56399476-56399495 | None:intergenic | 30.0% | |
| TACTAATCAAACAAGTGCTT+TGG | - | chr4_4:56399575-56399594 | Msa0689350:CDS | 30.0% | |
| !! | GGTATATTTTGTTTCATTGC+TGG | - | chr4_4:56399596-56399615 | Msa0689350:CDS | 30.0% |
| ! | CTTTTAAATCAGATTCTTCG+AGG | + | chr4_4:56399934-56399953 | None:intergenic | 30.0% |
| !!! | AATCGGCATTTTTAAAATGC+AGG | - | chr4_4:56400060-56400079 | Msa0689350:intron | 30.0% |
| CATCCGTTAAAAAGAATCAT+AGG | + | chr4_4:56400112-56400131 | None:intergenic | 30.0% | |
| ! | CTATGATTCTTTTTAACGGA+TGG | - | chr4_4:56400110-56400129 | Msa0689350:intron | 30.0% |
| !!! | TTTTTTTTGCAAAAGCCAGA+GGG | + | chr4_4:56400575-56400594 | None:intergenic | 30.0% |
| !!! | TTTTTTTTTGCAAAAGCCAG+AGG | + | chr4_4:56400576-56400595 | None:intergenic | 30.0% |
| !! | TCACTTGGCTTTTATGATAA+TGG | - | chr4_4:56400752-56400771 | Msa0689350:intron | 30.0% |
| ATAATGGTGAATATACGGTA+AGG | - | chr4_4:56400768-56400787 | Msa0689350:intron | 30.0% | |
| AACAAATGGAGTTGTTATGA+AGG | + | chr4_4:56401256-56401275 | None:intergenic | 30.0% | |
| TATTTGACAAACAAGGCTAA+TGG | - | chr4_4:56401806-56401825 | Msa0689350:five_prime_UTR | 30.0% | |
| TTTGGTTGCAAATGCTTTGT+AGG | + | chr4_4:56397642-56397661 | None:intergenic | 35.0% | |
| ! | TTTCAATGTTGCTGTGCTTT+TGG | + | chr4_4:56397660-56397679 | None:intergenic | 35.0% |
| AAGAATGGAGACAGATTTGT+TGG | - | chr4_4:56397678-56397697 | Msa0689350:three_prime_UTR | 35.0% | |
| ! | TTGCTACTCATTTCAGCTTT+TGG | - | chr4_4:56397843-56397862 | Msa0689350:CDS | 35.0% |
| GGAATTCAACACTGCTATAA+AGG | - | chr4_4:56397864-56397883 | Msa0689350:CDS | 35.0% | |
| TGAAGAACAAGAACAAGAAC+AGG | + | chr4_4:56398124-56398143 | None:intergenic | 35.0% | |
| ATTCCTTAAATCTCCACTCT+AGG | - | chr4_4:56398344-56398363 | Msa0689350:CDS | 35.0% | |
| TTCCTTAAATCTCCACTCTA+GGG | - | chr4_4:56398345-56398364 | Msa0689350:CDS | 35.0% | |
| !!! | GTTGAGTTGACTTTGTCTTT+TGG | - | chr4_4:56398600-56398619 | Msa0689350:intron | 35.0% |
| !!! | GAAGTTTTGGATGAAAAGAG+GGG | - | chr4_4:56398662-56398681 | Msa0689350:intron | 35.0% |
| !!! | AAGTTTTGGATGAAAAGAGG+GGG | - | chr4_4:56398663-56398682 | Msa0689350:intron | 35.0% |
| TAGGTTTATGGTGTAGCAAA+TGG | + | chr4_4:56398951-56398970 | None:intergenic | 35.0% | |
| TTTGCTACACCATAAACCTA+AGG | - | chr4_4:56398951-56398970 | Msa0689350:intron | 35.0% | |
| GTTGCTAGCTAACATATGAA+TGG | + | chr4_4:56398994-56399013 | None:intergenic | 35.0% | |
| !! | TGGGATCTTTAGAACTAAGT+CGG | - | chr4_4:56399300-56399319 | Msa0689350:intron | 35.0% |
| ! | CCTTGTTATCCTTTGATACA+TGG | + | chr4_4:56399334-56399353 | None:intergenic | 35.0% |
| CCATGTATCAAAGGATAACA+AGG | - | chr4_4:56399331-56399350 | Msa0689350:intron | 35.0% | |
| TCAAAGGATAACAAGGTTGA+TGG | - | chr4_4:56399338-56399357 | Msa0689350:CDS | 35.0% | |
| !! | GGTTGATGGTTATTTGTTGA+AGG | - | chr4_4:56399352-56399371 | Msa0689350:CDS | 35.0% |
| AGTTACATTGCATTTGCAAG+AGG | - | chr4_4:56399389-56399408 | Msa0689350:CDS | 35.0% | |
| !!! | ATCTCTCTTTTTTTTGGTGG+TGG | - | chr4_4:56399436-56399455 | Msa0689350:CDS | 35.0% |
| CATAAAATATGCAAAGTCCG+GGG | + | chr4_4:56399474-56399493 | None:intergenic | 35.0% | |
| GCATAAAATATGCAAAGTCC+GGG | + | chr4_4:56399475-56399494 | None:intergenic | 35.0% | |
| ! | CTATTTTCGCAAAACTCAGA+TGG | + | chr4_4:56399655-56399674 | None:intergenic | 35.0% |
| !! | CTGATCCGTCATTTTATCTA+TGG | + | chr4_4:56399680-56399699 | None:intergenic | 35.0% |
| ! | ATTCCAGATTTTCCAGTGTT+CGG | + | chr4_4:56399782-56399801 | None:intergenic | 35.0% |
| CTGTGTATCACGTATAACTT+CGG | + | chr4_4:56399891-56399910 | None:intergenic | 35.0% | |
| TGAGGATTATAGAAACAACC+AGG | + | chr4_4:56399968-56399987 | None:intergenic | 35.0% | |
| CTATAATCCTCATGCATGTT+TGG | - | chr4_4:56399976-56399995 | Msa0689350:five_prime_UTR | 35.0% | |
| !! | ATTGTGGAGTTGGTGTTAAA+AGG | - | chr4_4:56400032-56400051 | Msa0689350:intron | 35.0% |
| !!! | GGCATTTTTAAAATGCAGGT+TGG | - | chr4_4:56400064-56400083 | Msa0689350:intron | 35.0% |
| ! | TTTAACGGATGGACATGTAT+TGG | - | chr4_4:56400121-56400140 | Msa0689350:intron | 35.0% |
| ! | ATGTATTGGCAAGAACAAAC+AGG | - | chr4_4:56400135-56400154 | Msa0689350:intron | 35.0% |
| CTAAACTTGCAACTGAAGAT+TGG | + | chr4_4:56400292-56400311 | None:intergenic | 35.0% | |
| CTTCAGTTGCAAGTTTAGTA+AGG | - | chr4_4:56400294-56400313 | Msa0689350:intron | 35.0% | |
| TGTACCTCAAGCAACATATT+TGG | + | chr4_4:56400461-56400480 | None:intergenic | 35.0% | |
| GCTAATGTGACACTCATAAT+GGG | + | chr4_4:56400630-56400649 | None:intergenic | 35.0% | |
| TGCTAATGTGACACTCATAA+TGG | + | chr4_4:56400631-56400650 | None:intergenic | 35.0% | |
| GCAAAAAGTAACTGTCTGAA+TGG | - | chr4_4:56400648-56400667 | Msa0689350:intron | 35.0% | |
| ! | TTTCTTTGCAATCTGAAGCA+TGG | - | chr4_4:56401003-56401022 | Msa0689350:intron | 35.0% |
| GATTCTAAGTCAGAAATGTC+AGG | + | chr4_4:56401165-56401184 | None:intergenic | 35.0% | |
| GACATTTCTGACTTAGAATC+CGG | - | chr4_4:56401165-56401184 | Msa0689350:intron | 35.0% | |
| ACATTTCTGACTTAGAATCC+GGG | - | chr4_4:56401166-56401185 | Msa0689350:intron | 35.0% | |
| GTGAAGATACATGATCTATC+TGG | - | chr4_4:56401213-56401232 | Msa0689350:intron | 35.0% | |
| ! | CACAGTTCTCATGTGTTTTT+CGG | + | chr4_4:56401526-56401545 | None:intergenic | 35.0% |
| GGAACTCTATTTGACAAACA+AGG | - | chr4_4:56401799-56401818 | Msa0689350:five_prime_UTR | 35.0% | |
| ACAAACAAGGCTAATGGTAA+TGG | - | chr4_4:56401812-56401831 | Msa0689350:five_prime_UTR | 35.0% | |
| GCACAGCAACATTGAAAGAA+TGG | - | chr4_4:56397663-56397682 | Msa0689350:three_prime_UTR | 40.0% | |
| AGGAACAGGAACAATCATAC+AGG | + | chr4_4:56398104-56398123 | None:intergenic | 40.0% | |
| ACAAGAACAAGAACAGGAAC+AGG | + | chr4_4:56398118-56398137 | None:intergenic | 40.0% | |
| TCAGAAGTTTCTCAACTGCT+TGG | - | chr4_4:56398259-56398278 | Msa0689350:CDS | 40.0% | |
| TACCCTAGAGTGGAGATTTA+AGG | + | chr4_4:56398350-56398369 | None:intergenic | 40.0% | |
| CAAACTCAAATACCCTAGAG+TGG | + | chr4_4:56398360-56398379 | None:intergenic | 40.0% | |
| !!! | AGTTTTGGATGAAAAGAGGG+GGG | - | chr4_4:56398664-56398683 | Msa0689350:intron | 40.0% |
| !! | CTTTGGAGTGAGGCAAAATT+TGG | + | chr4_4:56398755-56398774 | None:intergenic | 40.0% |
| !! | ACAACATGAACTTTGGAGTG+AGG | + | chr4_4:56398765-56398784 | None:intergenic | 40.0% |
| TAGACATGTTATCGCAACCT+TGG | - | chr4_4:56398839-56398858 | Msa0689350:intron | 40.0% | |
| !! | GGGATCTTTAGAACTAAGTC+GGG | - | chr4_4:56399301-56399320 | Msa0689350:intron | 40.0% |
| GGATTGTCACCATGTATCAA+AGG | - | chr4_4:56399322-56399341 | Msa0689350:intron | 40.0% | |
| CCATGTGACTAAGAGATCAA+AGG | + | chr4_4:56399536-56399555 | None:intergenic | 40.0% | |
| CCTTTGATCTCTTAGTCACA+TGG | - | chr4_4:56399533-56399552 | Msa0689350:CDS | 40.0% | |
| GATCAGTCGTGACAAGTATA+TGG | - | chr4_4:56399694-56399713 | Msa0689350:CDS | 40.0% | |
| ! | GCCTTTATTAGGTTGTCGAT+AGG | - | chr4_4:56399725-56399744 | Msa0689350:CDS | 40.0% |
| GCCTATCGACAACCTAATAA+AGG | + | chr4_4:56399729-56399748 | None:intergenic | 40.0% | |
| !! | TTAAAAGCGTTGTTAGCTCC+TGG | - | chr4_4:56399947-56399966 | Msa0689350:five_prime_UTR | 40.0% |
| TCCCTTCTTCCCTGAAAATA+CGG | + | chr4_4:56400008-56400027 | None:intergenic | 40.0% | |
| GGTGTTAAAAGGCAGCAAAT+CGG | - | chr4_4:56400043-56400062 | Msa0689350:intron | 40.0% | |
| AAACAGGAGAATGGAAAACC+AGG | - | chr4_4:56400151-56400170 | Msa0689350:intron | 40.0% | |
| GTTGCAAGTTTAGTAAGGAC+AGG | - | chr4_4:56400299-56400318 | Msa0689350:intron | 40.0% | |
| ACATATTTGGACCAAGGACA+TGG | + | chr4_4:56400448-56400467 | None:intergenic | 40.0% | |
| CAAGCAACATATTTGGACCA+AGG | + | chr4_4:56400454-56400473 | None:intergenic | 40.0% | |
| ! | TGGTCCAAATATGTTGCTTG+AGG | - | chr4_4:56400454-56400473 | Msa0689350:intron | 40.0% |
| !! | CTAAGCTTGCTGCATGATAT+AGG | - | chr4_4:56400492-56400511 | Msa0689350:intron | 40.0% |
| ATAGTAGGAATGACACAGTC+AGG | + | chr4_4:56400522-56400541 | None:intergenic | 40.0% | |
| ACTCCATTTGTTCCATCTTC+AGG | - | chr4_4:56401264-56401283 | Msa0689350:intron | 40.0% | |
| CAACCTGAAGATGGAACAAA+TGG | + | chr4_4:56401270-56401289 | None:intergenic | 40.0% | |
| !! | TTCCATCTTCAGGTTGTGAT+TGG | - | chr4_4:56401274-56401293 | Msa0689350:intron | 40.0% |
| !! | TCCATCTTCAGGTTGTGATT+GGG | - | chr4_4:56401275-56401294 | Msa0689350:intron | 40.0% |
| CATATAAATGCCGAAAAGGG+TGG | - | chr4_4:56401483-56401502 | Msa0689350:intron | 40.0% | |
| CGAAAAACACATGAGAACTG+TGG | - | chr4_4:56401524-56401543 | Msa0689350:intron | 40.0% | |
| TGGTAAACCATTAGTACAGC+TGG | - | chr4_4:56401659-56401678 | Msa0689350:intron | 40.0% | |
| CTTCTGATCTTCCTTCGAAA+AGG | + | chr4_4:56401771-56401790 | None:intergenic | 40.0% | |
| TTTCGAAGGAAGATCAGAAG+AGG | - | chr4_4:56401771-56401790 | Msa0689350:five_prime_UTR | 40.0% | |
| TTCGAAGGAAGATCAGAAGA+GGG | - | chr4_4:56401772-56401791 | Msa0689350:five_prime_UTR | 40.0% | |
| AGATCACGAGGACAAGAAGA+AGG | + | chr4_4:56397734-56397753 | None:intergenic | 45.0% | |
| TCTCAACTGCTTGGACTTTG+TGG | - | chr4_4:56398268-56398287 | Msa0689350:CDS | 45.0% | |
| !! | GTTTTGGATGAAAAGAGGGG+GGG | - | chr4_4:56398665-56398684 | Msa0689350:intron | 45.0% |
| AGTTCAAAGTCATGATGGCC+TGG | + | chr4_4:56398868-56398887 | None:intergenic | 45.0% | |
| !!! | CTCTTTTTTTTGGTGGTGGC+CGG | - | chr4_4:56399440-56399459 | Msa0689350:CDS | 45.0% |
| !!! | TCTTTTTTTTGGTGGTGGCC+GGG | - | chr4_4:56399441-56399460 | Msa0689350:CDS | 45.0% |
| ! | TGAGCATAGCTCAGTTGGTA+TGG | + | chr4_4:56399503-56399522 | None:intergenic | 45.0% |
| TGACAAGTATATGGATCCCC+AGG | - | chr4_4:56399703-56399722 | Msa0689350:CDS | 45.0% | |
| GACAACCTAATAAAGGCCTG+GGG | + | chr4_4:56399722-56399741 | None:intergenic | 45.0% | |
| CGACAACCTAATAAAGGCCT+GGG | + | chr4_4:56399723-56399742 | None:intergenic | 45.0% | |
| TCGACAACCTAATAAAGGCC+TGG | + | chr4_4:56399724-56399743 | None:intergenic | 45.0% | |
| ! | TCTCTGGGTTTGAGAAGTAC+TGG | - | chr4_4:56399749-56399768 | Msa0689350:CDS | 45.0% |
| ACTGGAATTGAACCGAACAC+TGG | - | chr4_4:56399767-56399786 | Msa0689350:CDS | 45.0% | |
| GAACCGAACACTGGAAAATC+TGG | - | chr4_4:56399776-56399795 | Msa0689350:CDS | 45.0% | |
| GTTTGTGAGATACGACTTCG+AGG | - | chr4_4:56399824-56399843 | Msa0689350:CDS | 45.0% | |
| ! | GGGACTGATGATGTTTGAAC+AGG | + | chr4_4:56399854-56399873 | None:intergenic | 45.0% |
| ACTTCGGCAGAGGTTATCAA+GGG | + | chr4_4:56399875-56399894 | None:intergenic | 45.0% | |
| AACTTCGGCAGAGGTTATCA+AGG | + | chr4_4:56399876-56399895 | None:intergenic | 45.0% | |
| ATCACGTATAACTTCGGCAG+AGG | + | chr4_4:56399885-56399904 | None:intergenic | 45.0% | |
| ! | TTGGAGATCGCCGTATTTTC+AGG | - | chr4_4:56399995-56400014 | Msa0689350:intron | 45.0% |
| ! | TGGAGATCGCCGTATTTTCA+GGG | - | chr4_4:56399996-56400015 | Msa0689350:intron | 45.0% |
| !! | GCCGTATTTTCAGGGAAGAA+GGG | - | chr4_4:56400004-56400023 | Msa0689350:intron | 45.0% |
| AAGGGATCTCATTGTGGAGT+TGG | - | chr4_4:56400022-56400041 | Msa0689350:intron | 45.0% | |
| GGCAAGAACAAACAGGAGAA+TGG | - | chr4_4:56400142-56400161 | Msa0689350:intron | 45.0% | |
| TTCAAATGCAATTCGGCACC+TGG | + | chr4_4:56400172-56400191 | None:intergenic | 45.0% | |
| CTGATCCTAGATACGTGTTC+CGG | - | chr4_4:56400206-56400225 | Msa0689350:intron | 45.0% | |
| TCAAACCGGAACACGTATCT+AGG | + | chr4_4:56400214-56400233 | None:intergenic | 45.0% | |
| ACCATAACACTCCATGTCCT+TGG | - | chr4_4:56400434-56400453 | Msa0689350:intron | 45.0% | |
| ! | ACCAAGGACATGGAGTGTTA+TGG | + | chr4_4:56400438-56400457 | None:intergenic | 45.0% |
| GCATTAGAGATTACTCCCTC+TGG | - | chr4_4:56400557-56400576 | Msa0689350:intron | 45.0% | |
| ACCAGATGTGACACTCACAA+TGG | - | chr4_4:56400855-56400874 | Msa0689350:intron | 45.0% | |
| CCAGATGTGACACTCACAAT+GGG | - | chr4_4:56400856-56400875 | Msa0689350:intron | 45.0% | |
| ATGTGACACTCACAATGGGA+CGG | - | chr4_4:56400860-56400879 | Msa0689350:intron | 45.0% | |
| ! | TTGACTCGTTGAGCACATAC+TGG | - | chr4_4:56401130-56401149 | Msa0689350:intron | 45.0% |
| TTTCTGACTTAGAATCCGGG+AGG | - | chr4_4:56401169-56401188 | Msa0689350:intron | 45.0% | |
| ACCCAATCACAACCTGAAGA+TGG | + | chr4_4:56401279-56401298 | None:intergenic | 45.0% | |
| GAACAATCAACCAAGCTCCT+GGG | + | chr4_4:56401314-56401333 | None:intergenic | 45.0% | |
| CTTGAGGTTCGGATAGAAGA+TGG | + | chr4_4:56401434-56401453 | None:intergenic | 45.0% | |
| CTTCTATCCGAACCTCAAGA+TGG | - | chr4_4:56401435-56401454 | Msa0689350:intron | 45.0% | |
| ATTGCCTCCATCTTGAGGTT+CGG | + | chr4_4:56401445-56401464 | None:intergenic | 45.0% | |
| AGAAGATTGCCTCCATCTTG+AGG | + | chr4_4:56401450-56401469 | None:intergenic | 45.0% | |
| ! | GAAAAACTCGCCACCCTTTT+CGG | + | chr4_4:56401496-56401515 | None:intergenic | 45.0% |
| CATGAGAACTGTGGCTTCTA+CGG | - | chr4_4:56401533-56401552 | Msa0689350:intron | 45.0% | |
| ! | CTACTTTGGGGACTAGGTAT+TGG | + | chr4_4:56401564-56401583 | None:intergenic | 45.0% |
| ATACCTAGTCCCCAAAGTAG+CGG | - | chr4_4:56401564-56401583 | Msa0689350:intron | 45.0% | |
| ! | ACCAAAGTCTCCGCTACTTT+GGG | + | chr4_4:56401577-56401596 | None:intergenic | 45.0% |
| ATGACAAACCCTCCAACAAC+CGG | + | chr4_4:56401609-56401628 | None:intergenic | 45.0% | |
| GTCATGAGCTGTAGAGTTCA+AGG | - | chr4_4:56401624-56401643 | Msa0689350:intron | 45.0% | |
| AGCTGTAGAGTTCAAGGTGA+AGG | - | chr4_4:56401630-56401649 | Msa0689350:intron | 45.0% | |
| GGAAGATCAGAAGAGGGATT+CGG | - | chr4_4:56401778-56401797 | Msa0689350:five_prime_UTR | 45.0% | |
| !!! | CTTTTTTTTGGTGGTGGCCG+GGG | - | chr4_4:56399442-56399461 | Msa0689350:CDS | 50.0% |
| TGGATCCCCAGGCCTTTATT+AGG | - | chr4_4:56399714-56399733 | Msa0689350:CDS | 50.0% | |
| TAGGTTGTCGATAGGCTCTC+TGG | - | chr4_4:56399733-56399752 | Msa0689350:CDS | 50.0% | |
| AGGTTGTCGATAGGCTCTCT+GGG | - | chr4_4:56399734-56399753 | Msa0689350:CDS | 50.0% | |
| CTTCGGCAGAGGTTATCAAG+GGG | + | chr4_4:56399874-56399893 | None:intergenic | 50.0% | |
| GCGATCTCCAAACATGCATG+AGG | + | chr4_4:56399986-56400005 | None:intergenic | 50.0% | |
| !! | CGCCGTATTTTCAGGGAAGA+AGG | - | chr4_4:56400003-56400022 | Msa0689350:intron | 50.0% |
| GGGAAGAAGGGATCTCATTG+TGG | - | chr4_4:56400016-56400035 | Msa0689350:intron | 50.0% | |
| ! | AAATGCAGGTTGGCCCTGAA+TGG | - | chr4_4:56400074-56400093 | Msa0689350:intron | 50.0% |
| ! | AATGCAGGTTGGCCCTGAAT+GGG | - | chr4_4:56400075-56400094 | Msa0689350:intron | 50.0% |
| GTTTCCCTTCACCCCATTCA+GGG | + | chr4_4:56400090-56400109 | None:intergenic | 50.0% | |
| ! | CGGAACACGTATCTAGGATC+AGG | + | chr4_4:56400208-56400227 | None:intergenic | 50.0% |
| CCTTGCAGCAGAACTATCTG+AGG | + | chr4_4:56400256-56400275 | None:intergenic | 50.0% | |
| ! | CCTCAGATAGTTCTGCTGCA+AGG | - | chr4_4:56400253-56400272 | Msa0689350:intron | 50.0% |
| CCCATTGTGAGTGTCACATC+TGG | + | chr4_4:56400859-56400878 | None:intergenic | 50.0% | |
| CTCGTTGAGCACATACTGGT+CGG | - | chr4_4:56401134-56401153 | Msa0689350:intron | 50.0% | |
| TCGTTGAGCACATACTGGTC+GGG | - | chr4_4:56401135-56401154 | Msa0689350:intron | 50.0% | |
| GAGAGAGAGAAAAGGGTGGA+AGG | - | chr4_4:56401191-56401210 | Msa0689350:intron | 50.0% | |
| AATCAACCAAGCTCCTGGGT+TGG | + | chr4_4:56401310-56401329 | None:intergenic | 50.0% | |
| CGAACAATCAACCAAGCTCC+TGG | + | chr4_4:56401315-56401334 | None:intergenic | 50.0% | |
| GTTGATTGTTCGTCCCGATG+TGG | - | chr4_4:56401323-56401342 | Msa0689350:intron | 50.0% | |
| ATTGTTCGTCCCGATGTGGT+TGG | - | chr4_4:56401327-56401346 | Msa0689350:intron | 50.0% | |
| TCGGATCTACCAACCACATC+GGG | + | chr4_4:56401339-56401358 | None:intergenic | 50.0% | |
| CTCGGATCTACCAACCACAT+CGG | + | chr4_4:56401340-56401359 | None:intergenic | 50.0% | |
| CATGCTTCAAGCTTTCCCCA+CGG | + | chr4_4:56401372-56401391 | None:intergenic | 50.0% | |
| CTATCCGAACCTCAAGATGG+AGG | - | chr4_4:56401438-56401457 | Msa0689350:intron | 50.0% | |
| ! | CCAAAGTCTCCGCTACTTTG+GGG | + | chr4_4:56401576-56401595 | None:intergenic | 50.0% |
| CACCAAAGTCTCCGCTACTT+TGG | + | chr4_4:56401578-56401597 | None:intergenic | 50.0% | |
| ! | AGACTTTGGTGCACTGAGTC+CGG | - | chr4_4:56401587-56401606 | Msa0689350:intron | 50.0% |
| GTTCAAGGTGAAGGAAAGCG+TGG | - | chr4_4:56401639-56401658 | Msa0689350:intron | 50.0% | |
| CGCAATGCCAGCTGTACTAA+TGG | + | chr4_4:56401669-56401688 | None:intergenic | 50.0% | |
| AATGCTGAGGTCAACAGCTG+CGG | + | chr4_4:56401736-56401755 | None:intergenic | 50.0% | |
| AGCTGTTGACCTCAGCATTG+AGG | - | chr4_4:56401737-56401756 | Msa0689350:intron | 50.0% | |
| ! | AGGCATGCAAGCCTTTTCGA+AGG | - | chr4_4:56401757-56401776 | Msa0689350:intron | 50.0% |
| ! | CTGAGAGTGCACAGATCACG+AGG | + | chr4_4:56397746-56397765 | None:intergenic | 55.0% |
| TTGGATGAAAAGAGGGGGGG+TGG | - | chr4_4:56398668-56398687 | Msa0689350:intron | 55.0% | |
| TTATCGCAACCTTGGCGACC+AGG | - | chr4_4:56398847-56398866 | Msa0689350:intron | 55.0% | |
| AAAGTCCGGGGTTCAAACCC+CGG | + | chr4_4:56399462-56399481 | None:intergenic | 55.0% | |
| CCTCGTGAGCATAGCTCAGT+TGG | + | chr4_4:56399508-56399527 | None:intergenic | 55.0% | |
| CCAACTGAGCTATGCTCACG+AGG | - | chr4_4:56399505-56399524 | Msa0689350:CDS | 55.0% | |
| ! | ATGCAGGTTGGCCCTGAATG+GGG | - | chr4_4:56400076-56400095 | Msa0689350:intron | 55.0% |
| TTGGCCCTGAATGGGGTGAA+GGG | - | chr4_4:56400083-56400102 | Msa0689350:intron | 55.0% | |
| GGTTTCCCTTCACCCCATTC+AGG | + | chr4_4:56400091-56400110 | None:intergenic | 55.0% | |
| TGACACTCACAATGGGACGG+AGG | - | chr4_4:56400863-56400882 | Msa0689350:intron | 55.0% | |
| GACACTCACAATGGGACGGA+GGG | - | chr4_4:56400864-56400883 | Msa0689350:intron | 55.0% | |
| TCCGGGAGGAGAGAGAGAAA+AGG | - | chr4_4:56401183-56401202 | Msa0689350:intron | 55.0% | |
| ! | CCCTTTTCTCTCTCTCCTCC+CGG | + | chr4_4:56401187-56401206 | None:intergenic | 55.0% |
| CCGGGAGGAGAGAGAGAAAA+GGG | - | chr4_4:56401184-56401203 | Msa0689350:intron | 55.0% | |
| GGAGGAGAGAGAGAAAAGGG+TGG | - | chr4_4:56401187-56401206 | Msa0689350:intron | 55.0% | |
| TGGGTTGCAAGATCCAACCC+AGG | - | chr4_4:56401294-56401313 | Msa0689350:intron | 55.0% | |
| CAAGATCCAACCCAGGAGCT+TGG | - | chr4_4:56401301-56401320 | Msa0689350:intron | 55.0% | |
| !! | TGGTTGGTAGATCCGAGAGC+TGG | - | chr4_4:56401343-56401362 | Msa0689350:intron | 55.0% |
| CGTGGGGAAAGCTTGAAGCA+TGG | - | chr4_4:56401370-56401389 | Msa0689350:intron | 55.0% | |
| ! | TCTCCGCTACTTTGGGGACT+AGG | + | chr4_4:56401570-56401589 | None:intergenic | 55.0% |
| ! | CCCCAAAGTAGCGGAGACTT+TGG | - | chr4_4:56401573-56401592 | Msa0689350:intron | 55.0% |
| CACTGAGTCCGGTTGTTGGA+GGG | - | chr4_4:56401598-56401617 | Msa0689350:intron | 55.0% | |
| GGAGGATGCTGCCATCTTCA+TGG | - | chr4_4:56401704-56401723 | Msa0689350:intron | 55.0% | |
| TGCGGCAAGTGCCATGAAGA+TGG | + | chr4_4:56401718-56401737 | None:intergenic | 55.0% | |
| GCTTGCATGCCTCAATGCTG+AGG | + | chr4_4:56401749-56401768 | None:intergenic | 55.0% | |
| TCATGATGGCCTGGTCGCCA+AGG | + | chr4_4:56398859-56398878 | None:intergenic | 60.0% | |
| GTTGGCCCTGAATGGGGTGA+AGG | - | chr4_4:56400082-56400101 | Msa0689350:intron | 60.0% | |
| GGTGCACTGAGTCCGGTTGT+TGG | - | chr4_4:56401594-56401613 | Msa0689350:intron | 60.0% | |
| GCACTGAGTCCGGTTGTTGG+AGG | - | chr4_4:56401597-56401616 | Msa0689350:intron | 60.0% | |
| ATTGCGACACGTGACGTGCG+TGG | - | chr4_4:56401683-56401702 | Msa0689350:intron | 60.0% | |
| ATCCGAGAGCTGGCAGCCGT+GGG | - | chr4_4:56401353-56401372 | Msa0689350:intron | 65.0% | |
| CTTGAAGCATGGCGCGAGCG+TGG | - | chr4_4:56401381-56401400 | Msa0689350:intron | 65.0% | |
| GGTGGCCGGGGTTTGAACCC+CGG | - | chr4_4:56399454-56399473 | Msa0689350:CDS | 70.0% | |
| GATCCGAGAGCTGGCAGCCG+TGG | - | chr4_4:56401352-56401371 | Msa0689350:intron | 70.0% | |
| TCCGAGAGCTGGCAGCCGTG+GGG | - | chr4_4:56401354-56401373 | Msa0689350:intron | 70.0% | |
| TCCCCACGGCTGCCAGCTCT+CGG | + | chr4_4:56401358-56401377 | None:intergenic | 70.0% | |
| GCGACACGTGACGTGCGTGG+AGG | - | chr4_4:56401686-56401705 | Msa0689350:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 56397619 | 56402034 | 56397619 | ID=Msa0689350;Name=Msa0689350 |
| chr4_4 | mRNA | 56397619 | 56402034 | 56397619 | ID=Msa0689350-mRNA-1;Parent=Msa0689350;Name=Msa0689350-mRNA-1;_AED=0.13;_eAED=0.13;_QI=329|1|1|1|0.5|0.33|3|222|433 |
| chr4_4 | exon | 56397619 | 56398534 | 56397619 | ID=Msa0689350-mRNA-1:exon:14892;Parent=Msa0689350-mRNA-1 |
| chr4_4 | exon | 56399333 | 56400002 | 56399333 | ID=Msa0689350-mRNA-1:exon:14891;Parent=Msa0689350-mRNA-1 |
| chr4_4 | exon | 56401768 | 56402034 | 56401768 | ID=Msa0689350-mRNA-1:exon:14890;Parent=Msa0689350-mRNA-1 |
| chr4_4 | five_prime_UTR | 56401768 | 56402034 | 56401768 | ID=Msa0689350-mRNA-1:five_prime_utr;Parent=Msa0689350-mRNA-1 |
| chr4_4 | five_prime_UTR | 56399941 | 56400002 | 56399941 | ID=Msa0689350-mRNA-1:five_prime_utr;Parent=Msa0689350-mRNA-1 |
| chr4_4 | CDS | 56399333 | 56399940 | 56399333 | ID=Msa0689350-mRNA-1:cds;Parent=Msa0689350-mRNA-1 |
| chr4_4 | CDS | 56397841 | 56398534 | 56397841 | ID=Msa0689350-mRNA-1:cds;Parent=Msa0689350-mRNA-1 |
| chr4_4 | three_prime_UTR | 56397619 | 56397840 | 56397619 | ID=Msa0689350-mRNA-1:three_prime_utr;Parent=Msa0689350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
