Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1229740 | XP_013443975.1 | 97.921 | 433 | 9 | 0 | 1 | 433 | 1 | 433 | 0.0 | 868 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1229740 | A0A072TKP9 | 97.921 | 433 | 9 | 0 | 1 | 433 | 1 | 433 | 0.0 | 868 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0689350 | Msa1229740 | 0.963197 | 8.607714e-122 | -8.615850e-47 |
| Msa0930270 | Msa1229740 | 0.806974 | 6.338331e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1229740 | MtrunA17_Chr8g0337321 | 93.995 | 433 | 9 | 1 | 1 | 433 | 1 | 416 | 0.0 | 825 |
| Msa1229740 | MtrunA17_Chr3g0140721 | 39.207 | 454 | 239 | 12 | 1 | 427 | 1 | 444 | 2.03e-91 | 284 |
| Msa1229740 | MtrunA17_Chr6g0487371 | 38.235 | 442 | 232 | 11 | 1 | 429 | 1 | 414 | 1.17e-84 | 265 |
| Msa1229740 | MtrunA17_Chr5g0393941 | 36.283 | 452 | 230 | 12 | 1 | 430 | 64 | 479 | 1.17e-78 | 251 |
| Msa1229740 | MtrunA17_Chr8g0389691 | 45.178 | 197 | 82 | 4 | 235 | 427 | 2 | 176 | 2.26e-43 | 150 |
| Msa1229740 | MtrunA17_Chr8g0389701 | 38.532 | 109 | 64 | 2 | 95 | 203 | 53 | 158 | 1.50e-14 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1229740 | AT5G17640.1 | 73.349 | 424 | 103 | 6 | 1 | 420 | 1 | 418 | 0.0 | 597 |
| Msa1229740 | AT1G10020.1 | 39.262 | 461 | 238 | 13 | 1 | 427 | 1 | 453 | 2.22e-90 | 281 |
| Msa1229740 | AT4G29310.1 | 39.636 | 439 | 227 | 10 | 1 | 427 | 1 | 413 | 3.26e-89 | 277 |
| Msa1229740 | AT3G19680.1 | 34.747 | 495 | 246 | 13 | 1 | 430 | 1 | 483 | 8.78e-74 | 239 |
| Msa1229740 | AT1G50040.1 | 36.229 | 472 | 241 | 15 | 1 | 431 | 1 | 453 | 1.90e-67 | 222 |
| Msa1229740 | AT4G29310.2 | 38.507 | 335 | 183 | 8 | 1 | 323 | 1 | 324 | 1.27e-60 | 200 |
Find 139 sgRNAs with CRISPR-Local
Find 290 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCTACTCATTTCAGCTTT+TGG | 0.241096 | 8_2:+5680283 | Msa1229740:five_prime_UTR |
| TTTCAATGTTGCTGTGCTTT+TGG | 0.250928 | 8_2:-5680097 | None:intergenic |
| GGTTTCCCTTCACCCCATTC+AGG | 0.254809 | 8_2:-5682522 | None:intergenic |
| TTCCATCTTCAGGTTGTGAT+TGG | 0.257792 | 8_2:+5683709 | Msa1229740:CDS |
| GGAATTCAACACTGCTATAA+AGG | 0.273384 | 8_2:+5680304 | Msa1229740:five_prime_UTR |
| ACTCCATTTGTTCCATCTTC+AGG | 0.295514 | 8_2:+5683699 | Msa1229740:CDS |
| TGGATCCCCAGGCCTTTATT+AGG | 0.311476 | 8_2:+5682148 | Msa1229740:CDS |
| TAGGTTGTCGATAGGCTCTC+TGG | 0.312333 | 8_2:+5682167 | Msa1229740:CDS |
| ACCAAAGTCTCCGCTACTTT+GGG | 0.330454 | 8_2:-5684009 | None:intergenic |
| CTATAATCCTCATGCATGTT+TGG | 0.342455 | 8_2:+5682410 | Msa1229740:CDS |
| ATTGTGGAGTTGGTGTTAAA+AGG | 0.354539 | 8_2:+5682466 | Msa1229740:CDS |
| GAACCGAACACTGGAAAATC+TGG | 0.358986 | 8_2:+5682210 | Msa1229740:CDS |
| GATCAGTCGTGACAAGTATA+TGG | 0.365855 | 8_2:+5682128 | Msa1229740:exon |
| TTTGGTTGCAAATGCTTTGT+AGG | 0.376814 | 8_2:-5680079 | None:intergenic |
| CTAAACTTGCAACTGAAGAT+TGG | 0.389372 | 8_2:-5682723 | None:intergenic |
| TCAAACCGGAACACGTATCT+AGG | 0.390399 | 8_2:-5682645 | None:intergenic |
| TCCCCACGGCTGCCAGCTCT+CGG | 0.391454 | 8_2:-5683790 | None:intergenic |
| CTTCAGTTGCAAGTTTAGTA+AGG | 0.396399 | 8_2:+5682728 | Msa1229740:CDS |
| GACATTTCTGACTTAGAATC+CGG | 0.396894 | 8_2:+5683600 | Msa1229740:CDS |
| GCCTATCGACAACCTAATAA+AGG | 0.397474 | 8_2:-5682160 | None:intergenic |
| CACCAAAGTCTCCGCTACTT+TGG | 0.403157 | 8_2:-5684010 | None:intergenic |
| CTACTTTGGGGACTAGGTAT+TGG | 0.403650 | 8_2:-5683996 | None:intergenic |
| TTTAACGGATGGACATGTAT+TGG | 0.403761 | 8_2:+5682555 | Msa1229740:CDS |
| TCTCCGCTACTTTGGGGACT+AGG | 0.411180 | 8_2:-5684002 | None:intergenic |
| CTGATCCTAGATACGTGTTC+CGG | 0.418994 | 8_2:+5682640 | Msa1229740:CDS |
| CGCAATGCCAGCTGTACTAA+TGG | 0.422674 | 8_2:-5684101 | None:intergenic |
| AATTCATATAAATGCCGAAA+AGG | 0.425545 | 8_2:+5683914 | Msa1229740:CDS |
| TCCCTCTTCTGATCTTCCTT+CGG | 0.425944 | 8_2:-5684208 | None:intergenic |
| TTTAACTTTCAAATGCAATT+CGG | 0.430158 | 8_2:-5682610 | None:intergenic |
| GTCATGAGCTGTAGAGTTCA+AGG | 0.432518 | 8_2:+5684059 | Msa1229740:CDS |
| AAATGCAGGTTGGCCCTGAA+TGG | 0.434195 | 8_2:+5682508 | Msa1229740:CDS |
| AAGAATGGAGACAGATTTGT+TGG | 0.437841 | 8_2:+5680118 | Msa1229740:five_prime_UTR |
| GGAGGATGCTGCCATCTTCA+TGG | 0.442367 | 8_2:+5684139 | Msa1229740:CDS |
| GTGAAGATACATGATCTATC+TGG | 0.443249 | 8_2:+5683648 | Msa1229740:CDS |
| CAACCTGAAGATGGAACAAA+TGG | 0.444232 | 8_2:-5683702 | None:intergenic |
| TTCAAATGCAATTCGGCACC+TGG | 0.448516 | 8_2:-5682603 | None:intergenic |
| TCCCTTCTTCCCTGAAAATA+CGG | 0.451160 | 8_2:-5682439 | None:intergenic |
| CATGAGAACTGTGGCTTCTA+CGG | 0.453039 | 8_2:+5683968 | Msa1229740:CDS |
| CACTGAGTCCGGTTGTTGGA+GGG | 0.453922 | 8_2:+5684033 | Msa1229740:CDS |
| ATGACAAACCCTCCAACAAC+CGG | 0.456528 | 8_2:-5684041 | None:intergenic |
| GCACAGCAACATTGAAAGAA+TGG | 0.457187 | 8_2:+5680103 | Msa1229740:five_prime_UTR |
| CGAACAATCAACCAAGCTCC+TGG | 0.461063 | 8_2:-5683747 | None:intergenic |
| AGACTTTGGTGCACTGAGTC+CGG | 0.461560 | 8_2:+5684022 | Msa1229740:CDS |
| TTAAAAGCGTTGTTAGCTCC+TGG | 0.463507 | 8_2:+5682381 | Msa1229740:CDS |
| TATTTGACAAACAAGGCTAA+TGG | 0.468098 | 8_2:+5684241 | Msa1229740:exon |
| ACAAACAAGGCTAATGGTAA+TGG | 0.472418 | 8_2:+5684247 | Msa1229740:exon |
| TCCATCTTCAGGTTGTGATT+GGG | 0.472477 | 8_2:+5683710 | Msa1229740:CDS |
| GGGACTGATGATGTTTGAAC+AGG | 0.472804 | 8_2:-5682285 | None:intergenic |
| GGTGCACTGAGTCCGGTTGT+TGG | 0.478743 | 8_2:+5684029 | Msa1229740:CDS |
| CGACAACCTAATAAAGGCCT+GGG | 0.480173 | 8_2:-5682154 | None:intergenic |
| GTTTCCCTTCACCCCATTCA+GGG | 0.481122 | 8_2:-5682521 | None:intergenic |
| TCGACAACCTAATAAAGGCC+TGG | 0.481266 | 8_2:-5682155 | None:intergenic |
| CCCCAAAGTAGCGGAGACTT+TGG | 0.482551 | 8_2:+5684008 | Msa1229740:CDS |
| TCCGGGAGGAGAGAGAGAAA+AGG | 0.486246 | 8_2:+5683618 | Msa1229740:CDS |
| GATCCGAGAGCTGGCAGCCG+TGG | 0.487143 | 8_2:+5683787 | Msa1229740:CDS |
| AACTTCGGCAGAGGTTATCA+AGG | 0.487315 | 8_2:-5682307 | None:intergenic |
| ATTGCCTCCATCTTGAGGTT+CGG | 0.487757 | 8_2:-5683877 | None:intergenic |
| GGAAGATCAGAAGAGGGATT+CGG | 0.491187 | 8_2:+5684213 | Msa1229740:CDS |
| GAGAGAGAGAAAAGGGTGGA+AGG | 0.491297 | 8_2:+5683626 | Msa1229740:CDS |
| CCGGGAGGAGAGAGAGAAAA+GGG | 0.498010 | 8_2:+5683619 | Msa1229740:CDS |
| CGGAACACGTATCTAGGATC+AGG | 0.500149 | 8_2:-5682639 | None:intergenic |
| CTTCTGATCTTCCTTCGGAA+AGG | 0.500164 | 8_2:-5684203 | None:intergenic |
| CTCGTTGAGCACATACTGGT+CGG | 0.500573 | 8_2:+5683569 | Msa1229740:CDS |
| TGCGGCAAGTGCCATGAAGA+TGG | 0.500784 | 8_2:-5684150 | None:intergenic |
| GTTGGCCCTGAATGGGGTGA+AGG | 0.501092 | 8_2:+5682516 | Msa1229740:CDS |
| AAGGGATCTCATTGTGGAGT+TGG | 0.502031 | 8_2:+5682456 | Msa1229740:CDS |
| TCGGATCTACCAACCACATC+GGG | 0.502382 | 8_2:-5683771 | None:intergenic |
| CAAGATCCAACCCAGGAGCT+TGG | 0.503040 | 8_2:+5683736 | Msa1229740:CDS |
| ATGTATTGGCAAGAACAAAC+AGG | 0.506986 | 8_2:+5682569 | Msa1229740:CDS |
| CTTGAGGTTCGGATAGAAGA+TGG | 0.507376 | 8_2:-5683866 | None:intergenic |
| GTTGCAAGTTTAGTAAGGAC+AGG | 0.508269 | 8_2:+5682733 | Msa1229740:CDS |
| GGCAAGAACAAACAGGAGAA+TGG | 0.510514 | 8_2:+5682576 | Msa1229740:CDS |
| ATTCATATAAATGCCGAAAA+GGG | 0.511316 | 8_2:+5683915 | Msa1229740:CDS |
| AATGCAGGTTGGCCCTGAAT+GGG | 0.514543 | 8_2:+5682509 | Msa1229740:CDS |
| ACCCAATCACAACCTGAAGA+TGG | 0.516099 | 8_2:-5683711 | None:intergenic |
| GCCTTTATTAGGTTGTCGAT+AGG | 0.516364 | 8_2:+5682159 | Msa1229740:CDS |
| GTTTGTGAGATACGACTTCG+AGG | 0.518240 | 8_2:+5682258 | Msa1229740:CDS |
| ATGTTGTTATATCTTCAAAC+CGG | 0.520294 | 8_2:-5682659 | None:intergenic |
| TGGTAAACCATTAGTACAGC+TGG | 0.521217 | 8_2:+5684094 | Msa1229740:CDS |
| AAAATTGATACTTGAAGAAG+GGG | 0.523445 | 8_2:-5680261 | None:intergenic |
| TCTCTGGGTTTGAGAAGTAC+TGG | 0.531608 | 8_2:+5682183 | Msa1229740:CDS |
| CTTGAAGCATGGCGCGAGCG+TGG | 0.532811 | 8_2:+5683816 | Msa1229740:CDS |
| ATCCGAGAGCTGGCAGCCGT+GGG | 0.537636 | 8_2:+5683788 | Msa1229740:CDS |
| GGTGTTAAAAGGCAGCAAAT+CGG | 0.539455 | 8_2:+5682477 | Msa1229740:CDS |
| AGGTTGTCGATAGGCTCTCT+GGG | 0.543318 | 8_2:+5682168 | Msa1229740:CDS |
| TTGGCCCTGAATGGGGTGAA+GGG | 0.544814 | 8_2:+5682517 | Msa1229740:CDS |
| TTGACTCGTTGAGCACATAC+TGG | 0.554206 | 8_2:+5683565 | Msa1229740:CDS |
| GATTCTAAGTCAGAAATGTC+AGG | 0.555492 | 8_2:-5683597 | None:intergenic |
| CTTCTATCCGAACCTCAAGA+TGG | 0.556068 | 8_2:+5683870 | Msa1229740:CDS |
| GCACTGAGTCCGGTTGTTGG+AGG | 0.556371 | 8_2:+5684032 | Msa1229740:CDS |
| TCGTTGAGCACATACTGGTC+GGG | 0.560757 | 8_2:+5683570 | Msa1229740:CDS |
| AGAAGATTGCCTCCATCTTG+AGG | 0.562373 | 8_2:-5683882 | None:intergenic |
| AATCAACCAAGCTCCTGGGT+TGG | 0.563544 | 8_2:-5683742 | None:intergenic |
| TGACAAGTATATGGATCCCC+AGG | 0.575787 | 8_2:+5682137 | Msa1229740:exon |
| AGCTGTAGAGTTCAAGGTGA+AGG | 0.578146 | 8_2:+5684065 | Msa1229740:CDS |
| ACTGGAATTGAACCGAACAC+TGG | 0.584986 | 8_2:+5682201 | Msa1229740:CDS |
| TGGTTGGTAGATCCGAGAGC+TGG | 0.587077 | 8_2:+5683778 | Msa1229740:CDS |
| CATGCTTCAAGCTTTCCCCA+CGG | 0.589453 | 8_2:-5683804 | None:intergenic |
| TCCGAAGGAAGATCAGAAGA+GGG | 0.596281 | 8_2:+5684207 | Msa1229740:CDS |
| CGTGGGGAAAGCTTGAAGCA+TGG | 0.596348 | 8_2:+5683805 | Msa1229740:CDS |
| AGATCACGAGGACAAGAAGA+AGG | 0.597587 | 8_2:-5680171 | None:intergenic |
| ATTACATCAATGAAAAGCAA+AGG | 0.598757 | 8_2:-5684281 | None:intergenic |
| ACATTTCTGACTTAGAATCC+GGG | 0.603126 | 8_2:+5683601 | Msa1229740:CDS |
| ATCACGTATAACTTCGGCAG+AGG | 0.604581 | 8_2:-5682316 | None:intergenic |
| CATATAAATGCCGAAAAGGG+TGG | 0.606361 | 8_2:+5683918 | Msa1229740:CDS |
| TTCCGAAGGAAGATCAGAAG+AGG | 0.606799 | 8_2:+5684206 | Msa1229740:CDS |
| GAACAATCAACCAAGCTCCT+GGG | 0.607466 | 8_2:-5683746 | None:intergenic |
| CTGTGTATCACGTATAACTT+CGG | 0.610865 | 8_2:-5682322 | None:intergenic |
| ATTGTTCGTCCCGATGTGGT+TGG | 0.613008 | 8_2:+5683762 | Msa1229740:CDS |
| AACAAATGGAGTTGTTATGA+AGG | 0.614304 | 8_2:-5683688 | None:intergenic |
| CTGAGAGTGCACAGATCACG+AGG | 0.620566 | 8_2:-5680183 | None:intergenic |
| GGAACTCTATTTGACAAACA+AGG | 0.622049 | 8_2:+5684234 | Msa1229740:exon |
| GCTTGCATGCCTCAATGCTG+AGG | 0.626470 | 8_2:-5684181 | None:intergenic |
| AGCTGTTGACCTCAGCATTG+AGG | 0.627543 | 8_2:+5684172 | Msa1229740:CDS |
| ACTTCGGCAGAGGTTATCAA+GGG | 0.632357 | 8_2:-5682306 | None:intergenic |
| CCTCAGATAGTTCTGCTGCA+AGG | 0.634975 | 8_2:+5682687 | Msa1229740:CDS |
| AGGCATGCAAGCCTTTCCGA+AGG | 0.638060 | 8_2:+5684192 | Msa1229740:CDS |
| CTCGGATCTACCAACCACAT+CGG | 0.640213 | 8_2:-5683772 | None:intergenic |
| AAACAGGAGAATGGAAAACC+AGG | 0.643217 | 8_2:+5682585 | Msa1229740:CDS |
| GGGAAGAAGGGATCTCATTG+TGG | 0.645030 | 8_2:+5682450 | Msa1229740:CDS |
| CCAAAGTCTCCGCTACTTTG+GGG | 0.645734 | 8_2:-5684008 | None:intergenic |
| CCTTGCAGCAGAACTATCTG+AGG | 0.650920 | 8_2:-5682687 | None:intergenic |
| GTTGATTGTTCGTCCCGATG+TGG | 0.653420 | 8_2:+5683758 | Msa1229740:CDS |
| CTATCCGAACCTCAAGATGG+AGG | 0.654553 | 8_2:+5683873 | Msa1229740:CDS |
| GGAGGAGAGAGAGAAAAGGG+TGG | 0.657083 | 8_2:+5683622 | Msa1229740:CDS |
| TAGTACCATAGATAAAATGA+CGG | 0.658183 | 8_2:+5682106 | Msa1229740:five_prime_UTR |
| ATACCTAGTCCCCAAAGTAG+CGG | 0.662442 | 8_2:+5683999 | Msa1229740:CDS |
| TCCGAGAGCTGGCAGCCGTG+GGG | 0.668783 | 8_2:+5683789 | Msa1229740:CDS |
| GCGATCTCCAAACATGCATG+AGG | 0.673993 | 8_2:-5682417 | None:intergenic |
| ATTGCGACACGTGACGTGCG+TGG | 0.677610 | 8_2:+5684118 | Msa1229740:CDS |
| ATGCAGGTTGGCCCTGAATG+GGG | 0.680133 | 8_2:+5682510 | Msa1229740:CDS |
| AATGCTGAGGTCAACAGCTG+CGG | 0.681482 | 8_2:-5684168 | None:intergenic |
| TGAGGATTATAGAAACAACC+AGG | 0.699777 | 8_2:-5682399 | None:intergenic |
| TGGGTTGCAAGATCCAACCC+AGG | 0.701236 | 8_2:+5683729 | Msa1229740:CDS |
| GTTCAAGGTGAAGGAAAGCG+TGG | 0.702926 | 8_2:+5684074 | Msa1229740:CDS |
| CTTCGGCAGAGGTTATCAAG+GGG | 0.718907 | 8_2:-5682305 | None:intergenic |
| TTTCTGACTTAGAATCCGGG+AGG | 0.722320 | 8_2:+5683604 | Msa1229740:CDS |
| GACAACCTAATAAAGGCCTG+GGG | 0.731055 | 8_2:-5682153 | None:intergenic |
| GCGACACGTGACGTGCGTGG+AGG | 0.761972 | 8_2:+5684121 | Msa1229740:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACATGTATAAAAAATTAAA+AGG | - | chr8_2:5680400-5680419 | None:intergenic | 10.0% |
| !! | AATTTAATTACAGAAAATAA+GGG | - | chr8_2:5681331-5681350 | None:intergenic | 10.0% |
| !! | TAATTTAATTACAGAAAATA+AGG | - | chr8_2:5681332-5681351 | None:intergenic | 10.0% |
| !! | TTAAATTAAATTTCAAAACA+AGG | + | chr8_2:5681344-5681363 | Msa1229740:intron | 10.0% |
| !! | GCAAAAAAAAATTAAAAAAA+TGG | + | chr8_2:5683019-5683038 | Msa1229740:intron | 10.0% |
| !!! | TTTTCTAACATTTCATTTAT+TGG | + | chr8_2:5681503-5681522 | Msa1229740:intron | 15.0% |
| !! | CAATAATACTATATGTATAT+CGG | - | chr8_2:5681540-5681559 | None:intergenic | 15.0% |
| !!! | ACTTTTTTTTTTCTTATCTA+TGG | + | chr8_2:5681682-5681701 | Msa1229740:intron | 15.0% |
| !!! | CTTTTTTTTTTCTTATCTAT+GGG | + | chr8_2:5681683-5681702 | Msa1229740:intron | 15.0% |
| !!! | AAAGTGATTAATTTTATAGT+AGG | - | chr8_2:5682971-5682990 | None:intergenic | 15.0% |
| !!! | CATACATTTTATTAACATTT+TGG | - | chr8_2:5683482-5683501 | None:intergenic | 15.0% |
| !! | AAAAATTGATACTTGAAGAA+GGG | - | chr8_2:5680265-5680284 | None:intergenic | 20.0% |
| !!! | AAAAAGAATGGATTTTTAAG+TGG | - | chr8_2:5680360-5680379 | None:intergenic | 20.0% |
| !! | AAAAGAGTCAAATAACTTAT+GGG | - | chr8_2:5681158-5681177 | None:intergenic | 20.0% |
| !! | AAAAAGAGTCAAATAACTTA+TGG | - | chr8_2:5681159-5681178 | None:intergenic | 20.0% |
| !! | TTAATATGTATAAAGACCTT+AGG | - | chr8_2:5681404-5681423 | None:intergenic | 20.0% |
| !!! | AAACCTATGATTCTTTTTAA+CGG | + | chr8_2:5682540-5682559 | Msa1229740:CDS | 20.0% |
| !!! | TTTAACTTTCAAATGCAATT+CGG | - | chr8_2:5682613-5682632 | None:intergenic | 20.0% |
| !!! | GCATTCAAATTTTAAAATCA+AGG | + | chr8_2:5682828-5682847 | Msa1229740:intron | 20.0% |
| !!! | TTATGATAATGGTGAATATA+CGG | + | chr8_2:5683197-5683216 | Msa1229740:intron | 20.0% |
| !!! | TTTGATAGTTATTAAATGAC+AGG | + | chr8_2:5683532-5683551 | Msa1229740:intron | 20.0% |
| !!! | TTGATAGTTATTAAATGACA+GGG | + | chr8_2:5683533-5683552 | Msa1229740:intron | 20.0% |
| ! | AAAATTGATACTTGAAGAAG+GGG | - | chr8_2:5680264-5680283 | None:intergenic | 25.0% |
| ! | CAAAAATTGATACTTGAAGA+AGG | - | chr8_2:5680266-5680285 | None:intergenic | 25.0% |
| !! | AAAGTGTCAGAAAAAAAGAA+TGG | - | chr8_2:5680372-5680391 | None:intergenic | 25.0% |
| ! | CATGTATATGTTTATGTAAG+AGG | + | chr8_2:5680414-5680433 | Msa1229740:intron | 25.0% |
| ! | TATATGTTTATGTAAGAGGT+TGG | + | chr8_2:5680418-5680437 | Msa1229740:intron | 25.0% |
| !! | AGTTAGTTGAATTTGCATTT+TGG | + | chr8_2:5680467-5680486 | Msa1229740:intron | 25.0% |
| !! | GTTTTGTCTGATACTATTTA+TGG | + | chr8_2:5680590-5680609 | Msa1229740:intron | 25.0% |
| !! | GTTAAAACACATTTTTCACT+TGG | + | chr8_2:5680621-5680640 | Msa1229740:intron | 25.0% |
| ! | AAATTATTCACTCATCAGAT+AGG | + | chr8_2:5680869-5680888 | Msa1229740:intron | 25.0% |
| ! | TATGTCAATCATAGTTAGAT+AGG | + | chr8_2:5680949-5680968 | Msa1229740:intron | 25.0% |
| ! | ATGTCAATCATAGTTAGATA+GGG | + | chr8_2:5680950-5680969 | Msa1229740:intron | 25.0% |
| !! | GTTAGCTCAAATTTGTTTAA+AGG | - | chr8_2:5681135-5681154 | None:intergenic | 25.0% |
| ! | AAAGAGTCAAATAACTTATG+GGG | - | chr8_2:5681157-5681176 | None:intergenic | 25.0% |
| ! | AATTTGAGAAAACTTATGTG+AGG | + | chr8_2:5681238-5681257 | Msa1229740:intron | 25.0% |
| !!! | AAACTTTTTAACTTGCTAAC+TGG | - | chr8_2:5681621-5681640 | None:intergenic | 25.0% |
| ! | AAACCTAACCTATCATAAAA+TGG | + | chr8_2:5681714-5681733 | Msa1229740:intron | 25.0% |
| ! | AACCTAACCTATCATAAAAT+GGG | + | chr8_2:5681715-5681734 | Msa1229740:intron | 25.0% |
| !! | TAAAGATCCCATTTTATGAT+AGG | - | chr8_2:5681725-5681744 | None:intergenic | 25.0% |
| ! | CCAAAAAAAAAAGAGATCAA+AGG | - | chr8_2:5681867-5681886 | None:intergenic | 25.0% |
| !!! | CCTTTGATCTCTTTTTTTTT+TGG | + | chr8_2:5681864-5681883 | Msa1229740:intron | 25.0% |
| !!! | TTGATCTCTTTTTTTTTTGG+TGG | + | chr8_2:5681867-5681886 | Msa1229740:intron | 25.0% |
| ! | AGTTCTGTCTTATATTTAAC+AGG | + | chr8_2:5682063-5682082 | Msa1229740:intron | 25.0% |
| ! | TAGTACCATAGATAAAATGA+CGG | + | chr8_2:5682106-5682125 | Msa1229740:five_prime_UTR | 25.0% |
| ! | ATGTTGTTATATCTTCAAAC+CGG | - | chr8_2:5682662-5682681 | None:intergenic | 25.0% |
| ! | ACAAATCAATATCTTTCACT+TGG | + | chr8_2:5683171-5683190 | Msa1229740:intron | 25.0% |
| ! | AATATACGGTAAGGTTAATT+TGG | + | chr8_2:5683211-5683230 | Msa1229740:intron | 25.0% |
| ! | AATTCATATAAATGCCGAAA+AGG | + | chr8_2:5683914-5683933 | Msa1229740:CDS | 25.0% |
| ! | ATTCATATAAATGCCGAAAA+GGG | + | chr8_2:5683915-5683934 | Msa1229740:CDS | 25.0% |
| ! | ATTACATCAATGAAAAGCAA+AGG | - | chr8_2:5684284-5684303 | None:intergenic | 25.0% |
| TGATATGAAAAATGAAGCAG+TGG | - | chr8_2:5680221-5680240 | None:intergenic | 30.0% | |
| !!! | AAAGGTGAGATTTTTTCATC+TGG | + | chr8_2:5680322-5680341 | Msa1229740:intron | 30.0% |
| !!! | AAGGTGAGATTTTTTCATCT+GGG | + | chr8_2:5680323-5680342 | Msa1229740:intron | 30.0% |
| ! | TAGTTGAATTTGCATTTTGG+TGG | + | chr8_2:5680470-5680489 | Msa1229740:intron | 30.0% |
| AATAAGTGAAGAACAAGAAC+AGG | - | chr8_2:5680564-5680583 | None:intergenic | 30.0% | |
| !! | TAGGGTATTTGAGTTTGTTA+TGG | + | chr8_2:5680797-5680816 | Msa1229740:intron | 30.0% |
| !! | GTATTTGAGTTTGTTATGGT+TGG | + | chr8_2:5680801-5680820 | Msa1229740:intron | 30.0% |
| !! | TCAATTTCTAGAGTTTGTTG+TGG | + | chr8_2:5680825-5680844 | Msa1229740:intron | 30.0% |
| ! | CATTACTTGATAGTTTCACA+TGG | + | chr8_2:5680907-5680926 | Msa1229740:intron | 30.0% |
| ! | GAAACATGTGATAGAAGTTT+TGG | + | chr8_2:5681083-5681102 | Msa1229740:intron | 30.0% |
| !!! | TAGAAGTTTTGGATGAAAAG+AGG | + | chr8_2:5681094-5681113 | Msa1229740:intron | 30.0% |
| !!! | AGAAGTTTTGGATGAAAAGA+GGG | + | chr8_2:5681095-5681114 | Msa1229740:intron | 30.0% |
| AGATGAAACAACATGAACTT+TGG | - | chr8_2:5681206-5681225 | None:intergenic | 30.0% | |
| GATAAAGTTCAAAGTCATGA+TGG | - | chr8_2:5681307-5681326 | None:intergenic | 30.0% | |
| GTATAAAGACCTTAGGTTTA+TGG | - | chr8_2:5681397-5681416 | None:intergenic | 30.0% | |
| CTATATGTATATCGGTATGT+TGG | - | chr8_2:5681532-5681551 | None:intergenic | 30.0% | |
| TTAAATGCAGACTGTGATTA+AGG | + | chr8_2:5681641-5681660 | Msa1229740:intron | 30.0% | |
| TTTCTTATCTATGGGTTCTA+AGG | + | chr8_2:5681691-5681710 | Msa1229740:intron | 30.0% | |
| ! | ATCCCATTTTATGATAGGTT+AGG | - | chr8_2:5681720-5681739 | None:intergenic | 30.0% |
| !! | GTTGATGGTTATTTGTTGAA+GGG | + | chr8_2:5681787-5681806 | Msa1229740:intron | 30.0% |
| CAAATGCAATGTAACTACAA+TGG | - | chr8_2:5681819-5681838 | None:intergenic | 30.0% | |
| !!! | ATCTCTTTTTTTTTTGGTGG+TGG | + | chr8_2:5681870-5681889 | Msa1229740:intron | 30.0% |
| TGCATAAAATATGCAAAGTC+CGG | - | chr8_2:5681910-5681929 | None:intergenic | 30.0% | |
| TACTAATCAAACAAGTGCTT+TGG | + | chr8_2:5682009-5682028 | Msa1229740:intron | 30.0% | |
| !! | GGTATATTTTGTTTCATTGC+TGG | + | chr8_2:5682030-5682049 | Msa1229740:intron | 30.0% |
| ! | CTTTTAAATCAGATTCTTCG+AGG | - | chr8_2:5682368-5682387 | None:intergenic | 30.0% |
| !!! | AATCGGCATTTTTAAAATGC+AGG | + | chr8_2:5682494-5682513 | Msa1229740:CDS | 30.0% |
| CATCCGTTAAAAAGAATCAT+AGG | - | chr8_2:5682546-5682565 | None:intergenic | 30.0% | |
| ! | CTATGATTCTTTTTAACGGA+TGG | + | chr8_2:5682544-5682563 | Msa1229740:CDS | 30.0% |
| !!! | TTTTTTTTGCAAAAGCCAGA+GGG | - | chr8_2:5683009-5683028 | None:intergenic | 30.0% |
| !!! | TTTTTTTTTGCAAAAGCCAG+AGG | - | chr8_2:5683010-5683029 | None:intergenic | 30.0% |
| GCAAAAAATAACTGTCTGAA+TGG | + | chr8_2:5683082-5683101 | Msa1229740:intron | 30.0% | |
| !! | TCACTTGGCTTTTATGATAA+TGG | + | chr8_2:5683186-5683205 | Msa1229740:intron | 30.0% |
| ATAATGGTGAATATACGGTA+AGG | + | chr8_2:5683202-5683221 | Msa1229740:intron | 30.0% | |
| AACAAATGGAGTTGTTATGA+AGG | - | chr8_2:5683691-5683710 | None:intergenic | 30.0% | |
| TATTTGACAAACAAGGCTAA+TGG | + | chr8_2:5684241-5684260 | Msa1229740:exon | 30.0% | |
| TTTGGTTGCAAATGCTTTGT+AGG | - | chr8_2:5680082-5680101 | None:intergenic | 35.0% | |
| ! | TTTCAATGTTGCTGTGCTTT+TGG | - | chr8_2:5680100-5680119 | None:intergenic | 35.0% |
| AAGAATGGAGACAGATTTGT+TGG | + | chr8_2:5680118-5680137 | Msa1229740:five_prime_UTR | 35.0% | |
| ! | TTGCTACTCATTTCAGCTTT+TGG | + | chr8_2:5680283-5680302 | Msa1229740:five_prime_UTR | 35.0% |
| GGAATTCAACACTGCTATAA+AGG | + | chr8_2:5680304-5680323 | Msa1229740:five_prime_UTR | 35.0% | |
| ATTCCTTAAATCTCCACTCT+AGG | + | chr8_2:5680778-5680797 | Msa1229740:intron | 35.0% | |
| TTCCTTAAATCTCCACTCTA+GGG | + | chr8_2:5680779-5680798 | Msa1229740:intron | 35.0% | |
| !!! | GTTGAGTTGACTTTGTCTTT+TGG | + | chr8_2:5681034-5681053 | Msa1229740:intron | 35.0% |
| !!! | GAAGTTTTGGATGAAAAGAG+GGG | + | chr8_2:5681096-5681115 | Msa1229740:intron | 35.0% |
| !!! | AAGTTTTGGATGAAAAGAGG+GGG | + | chr8_2:5681097-5681116 | Msa1229740:intron | 35.0% |
| TAGGTTTATGGTGTAGCAAA+TGG | - | chr8_2:5681385-5681404 | None:intergenic | 35.0% | |
| TTTGCTACACCATAAACCTA+AGG | + | chr8_2:5681385-5681404 | Msa1229740:intron | 35.0% | |
| GTTGCTAGCTAACATATGAA+TGG | - | chr8_2:5681428-5681447 | None:intergenic | 35.0% | |
| !! | TGGGATCTTTAGAACTAAGT+CGG | + | chr8_2:5681734-5681753 | Msa1229740:intron | 35.0% |
| ! | CCTTGTTATCCTTTGATACA+TGG | - | chr8_2:5681768-5681787 | None:intergenic | 35.0% |
| CCATGTATCAAAGGATAACA+AGG | + | chr8_2:5681765-5681784 | Msa1229740:intron | 35.0% | |
| TCAAAGGATAACAAGGTTGA+TGG | + | chr8_2:5681772-5681791 | Msa1229740:intron | 35.0% | |
| !! | GGTTGATGGTTATTTGTTGA+AGG | + | chr8_2:5681786-5681805 | Msa1229740:intron | 35.0% |
| AGTTACATTGCATTTGCAAG+AGG | + | chr8_2:5681823-5681842 | Msa1229740:intron | 35.0% | |
| CATAAAATATGCAAAGTCCG+GGG | - | chr8_2:5681908-5681927 | None:intergenic | 35.0% | |
| GCATAAAATATGCAAAGTCC+GGG | - | chr8_2:5681909-5681928 | None:intergenic | 35.0% | |
| ! | CTATTTTCGCAAAACTCAGA+TGG | - | chr8_2:5682089-5682108 | None:intergenic | 35.0% |
| !! | CTGATCCGTCATTTTATCTA+TGG | - | chr8_2:5682114-5682133 | None:intergenic | 35.0% |
| ! | ATTCCAGATTTTCCAGTGTT+CGG | - | chr8_2:5682216-5682235 | None:intergenic | 35.0% |
| CTGTGTATCACGTATAACTT+CGG | - | chr8_2:5682325-5682344 | None:intergenic | 35.0% | |
| TGAGGATTATAGAAACAACC+AGG | - | chr8_2:5682402-5682421 | None:intergenic | 35.0% | |
| CTATAATCCTCATGCATGTT+TGG | + | chr8_2:5682410-5682429 | Msa1229740:CDS | 35.0% | |
| !! | ATTGTGGAGTTGGTGTTAAA+AGG | + | chr8_2:5682466-5682485 | Msa1229740:CDS | 35.0% |
| !!! | GGCATTTTTAAAATGCAGGT+TGG | + | chr8_2:5682498-5682517 | Msa1229740:CDS | 35.0% |
| ! | TTTAACGGATGGACATGTAT+TGG | + | chr8_2:5682555-5682574 | Msa1229740:CDS | 35.0% |
| ! | ATGTATTGGCAAGAACAAAC+AGG | + | chr8_2:5682569-5682588 | Msa1229740:CDS | 35.0% |
| CTAAACTTGCAACTGAAGAT+TGG | - | chr8_2:5682726-5682745 | None:intergenic | 35.0% | |
| CTTCAGTTGCAAGTTTAGTA+AGG | + | chr8_2:5682728-5682747 | Msa1229740:CDS | 35.0% | |
| TGTACCTCAAGCAACATATT+TGG | - | chr8_2:5682895-5682914 | None:intergenic | 35.0% | |
| GCTAATGTGACACTCATAAT+GGG | - | chr8_2:5683064-5683083 | None:intergenic | 35.0% | |
| TGCTAATGTGACACTCATAA+TGG | - | chr8_2:5683065-5683084 | None:intergenic | 35.0% | |
| ! | TTTCTTTGCAATCTGAAGCA+TGG | + | chr8_2:5683438-5683457 | Msa1229740:intron | 35.0% |
| GATTCTAAGTCAGAAATGTC+AGG | - | chr8_2:5683600-5683619 | None:intergenic | 35.0% | |
| GACATTTCTGACTTAGAATC+CGG | + | chr8_2:5683600-5683619 | Msa1229740:CDS | 35.0% | |
| ACATTTCTGACTTAGAATCC+GGG | + | chr8_2:5683601-5683620 | Msa1229740:CDS | 35.0% | |
| GTGAAGATACATGATCTATC+TGG | + | chr8_2:5683648-5683667 | Msa1229740:CDS | 35.0% | |
| ! | CACAGTTCTCATGTGTTTTT+CGG | - | chr8_2:5683961-5683980 | None:intergenic | 35.0% |
| GGAACTCTATTTGACAAACA+AGG | + | chr8_2:5684234-5684253 | Msa1229740:exon | 35.0% | |
| ACAAACAAGGCTAATGGTAA+TGG | + | chr8_2:5684247-5684266 | Msa1229740:exon | 35.0% | |
| GCACAGCAACATTGAAAGAA+TGG | + | chr8_2:5680103-5680122 | Msa1229740:five_prime_UTR | 40.0% | |
| AGGAACAGGAACAATCATAC+AGG | - | chr8_2:5680544-5680563 | None:intergenic | 40.0% | |
| TGAAGAACAAGAACAGGAAC+AGG | - | chr8_2:5680558-5680577 | None:intergenic | 40.0% | |
| TCAGAAGTTTCTCAACTGCT+TGG | + | chr8_2:5680693-5680712 | Msa1229740:intron | 40.0% | |
| TACCCTAGAGTGGAGATTTA+AGG | - | chr8_2:5680784-5680803 | None:intergenic | 40.0% | |
| CAAACTCAAATACCCTAGAG+TGG | - | chr8_2:5680794-5680813 | None:intergenic | 40.0% | |
| !!! | AGTTTTGGATGAAAAGAGGG+GGG | + | chr8_2:5681098-5681117 | Msa1229740:intron | 40.0% |
| !! | CTTTGGAGTGAGGCAAAATT+TGG | - | chr8_2:5681189-5681208 | None:intergenic | 40.0% |
| !! | ACAACATGAACTTTGGAGTG+AGG | - | chr8_2:5681199-5681218 | None:intergenic | 40.0% |
| TAGACATGTTATCGCAACCT+TGG | + | chr8_2:5681273-5681292 | Msa1229740:intron | 40.0% | |
| !! | GGGATCTTTAGAACTAAGTC+GGG | + | chr8_2:5681735-5681754 | Msa1229740:intron | 40.0% |
| GGATTGTCACCATGTATCAA+AGG | + | chr8_2:5681756-5681775 | Msa1229740:intron | 40.0% | |
| !!! | CTTTTTTTTTTGGTGGTGGC+CGG | + | chr8_2:5681874-5681893 | Msa1229740:intron | 40.0% |
| !!! | TTTTTTTTTTGGTGGTGGCC+GGG | + | chr8_2:5681875-5681894 | Msa1229740:intron | 40.0% |
| CCATGTGACTAAGAGATCAA+AGG | - | chr8_2:5681970-5681989 | None:intergenic | 40.0% | |
| CCTTTGATCTCTTAGTCACA+TGG | + | chr8_2:5681967-5681986 | Msa1229740:intron | 40.0% | |
| GATCAGTCGTGACAAGTATA+TGG | + | chr8_2:5682128-5682147 | Msa1229740:exon | 40.0% | |
| ! | GCCTTTATTAGGTTGTCGAT+AGG | + | chr8_2:5682159-5682178 | Msa1229740:CDS | 40.0% |
| GCCTATCGACAACCTAATAA+AGG | - | chr8_2:5682163-5682182 | None:intergenic | 40.0% | |
| !! | TTAAAAGCGTTGTTAGCTCC+TGG | + | chr8_2:5682381-5682400 | Msa1229740:CDS | 40.0% |
| TCCCTTCTTCCCTGAAAATA+CGG | - | chr8_2:5682442-5682461 | None:intergenic | 40.0% | |
| GGTGTTAAAAGGCAGCAAAT+CGG | + | chr8_2:5682477-5682496 | Msa1229740:CDS | 40.0% | |
| AAACAGGAGAATGGAAAACC+AGG | + | chr8_2:5682585-5682604 | Msa1229740:CDS | 40.0% | |
| GTTGCAAGTTTAGTAAGGAC+AGG | + | chr8_2:5682733-5682752 | Msa1229740:CDS | 40.0% | |
| ACATATTTGGACCAAGGACA+TGG | - | chr8_2:5682882-5682901 | None:intergenic | 40.0% | |
| CAAGCAACATATTTGGACCA+AGG | - | chr8_2:5682888-5682907 | None:intergenic | 40.0% | |
| ! | TGGTCCAAATATGTTGCTTG+AGG | + | chr8_2:5682888-5682907 | Msa1229740:intron | 40.0% |
| !! | CTAAGCTTGCTGCATGATAT+AGG | + | chr8_2:5682926-5682945 | Msa1229740:intron | 40.0% |
| ATAGTAGGAATGACACAGTC+AGG | - | chr8_2:5682956-5682975 | None:intergenic | 40.0% | |
| ACTCCATTTGTTCCATCTTC+AGG | + | chr8_2:5683699-5683718 | Msa1229740:CDS | 40.0% | |
| CAACCTGAAGATGGAACAAA+TGG | - | chr8_2:5683705-5683724 | None:intergenic | 40.0% | |
| !! | TTCCATCTTCAGGTTGTGAT+TGG | + | chr8_2:5683709-5683728 | Msa1229740:CDS | 40.0% |
| !! | TCCATCTTCAGGTTGTGATT+GGG | + | chr8_2:5683710-5683729 | Msa1229740:CDS | 40.0% |
| CATATAAATGCCGAAAAGGG+TGG | + | chr8_2:5683918-5683937 | Msa1229740:CDS | 40.0% | |
| CGAAAAACACATGAGAACTG+TGG | + | chr8_2:5683959-5683978 | Msa1229740:CDS | 40.0% | |
| TGGTAAACCATTAGTACAGC+TGG | + | chr8_2:5684094-5684113 | Msa1229740:CDS | 40.0% | |
| AGATCACGAGGACAAGAAGA+AGG | - | chr8_2:5680174-5680193 | None:intergenic | 45.0% | |
| TCTCAACTGCTTGGACTTTG+TGG | + | chr8_2:5680702-5680721 | Msa1229740:intron | 45.0% | |
| !! | GTTTTGGATGAAAAGAGGGG+GGG | + | chr8_2:5681099-5681118 | Msa1229740:intron | 45.0% |
| AGTTCAAAGTCATGATGGCC+TGG | - | chr8_2:5681302-5681321 | None:intergenic | 45.0% | |
| !!! | TTTTTTTTTGGTGGTGGCCG+GGG | + | chr8_2:5681876-5681895 | Msa1229740:intron | 45.0% |
| ! | TGAGCATAGCTCAGTTGGTA+TGG | - | chr8_2:5681937-5681956 | None:intergenic | 45.0% |
| TGACAAGTATATGGATCCCC+AGG | + | chr8_2:5682137-5682156 | Msa1229740:exon | 45.0% | |
| GACAACCTAATAAAGGCCTG+GGG | - | chr8_2:5682156-5682175 | None:intergenic | 45.0% | |
| CGACAACCTAATAAAGGCCT+GGG | - | chr8_2:5682157-5682176 | None:intergenic | 45.0% | |
| TCGACAACCTAATAAAGGCC+TGG | - | chr8_2:5682158-5682177 | None:intergenic | 45.0% | |
| ! | TCTCTGGGTTTGAGAAGTAC+TGG | + | chr8_2:5682183-5682202 | Msa1229740:CDS | 45.0% |
| ACTGGAATTGAACCGAACAC+TGG | + | chr8_2:5682201-5682220 | Msa1229740:CDS | 45.0% | |
| GAACCGAACACTGGAAAATC+TGG | + | chr8_2:5682210-5682229 | Msa1229740:CDS | 45.0% | |
| GTTTGTGAGATACGACTTCG+AGG | + | chr8_2:5682258-5682277 | Msa1229740:CDS | 45.0% | |
| ! | GGGACTGATGATGTTTGAAC+AGG | - | chr8_2:5682288-5682307 | None:intergenic | 45.0% |
| ACTTCGGCAGAGGTTATCAA+GGG | - | chr8_2:5682309-5682328 | None:intergenic | 45.0% | |
| AACTTCGGCAGAGGTTATCA+AGG | - | chr8_2:5682310-5682329 | None:intergenic | 45.0% | |
| ATCACGTATAACTTCGGCAG+AGG | - | chr8_2:5682319-5682338 | None:intergenic | 45.0% | |
| ! | TTGGAGATCGCCGTATTTTC+AGG | + | chr8_2:5682429-5682448 | Msa1229740:CDS | 45.0% |
| ! | TGGAGATCGCCGTATTTTCA+GGG | + | chr8_2:5682430-5682449 | Msa1229740:CDS | 45.0% |
| !! | GCCGTATTTTCAGGGAAGAA+GGG | + | chr8_2:5682438-5682457 | Msa1229740:CDS | 45.0% |
| AAGGGATCTCATTGTGGAGT+TGG | + | chr8_2:5682456-5682475 | Msa1229740:CDS | 45.0% | |
| GGCAAGAACAAACAGGAGAA+TGG | + | chr8_2:5682576-5682595 | Msa1229740:CDS | 45.0% | |
| TTCAAATGCAATTCGGCACC+TGG | - | chr8_2:5682606-5682625 | None:intergenic | 45.0% | |
| CTGATCCTAGATACGTGTTC+CGG | + | chr8_2:5682640-5682659 | Msa1229740:CDS | 45.0% | |
| TCAAACCGGAACACGTATCT+AGG | - | chr8_2:5682648-5682667 | None:intergenic | 45.0% | |
| ACCATAACACTCCATGTCCT+TGG | + | chr8_2:5682868-5682887 | Msa1229740:intron | 45.0% | |
| ! | ACCAAGGACATGGAGTGTTA+TGG | - | chr8_2:5682872-5682891 | None:intergenic | 45.0% |
| GCATTAGAGATTACTCCCTC+TGG | + | chr8_2:5682991-5683010 | Msa1229740:intron | 45.0% | |
| ACCAGATGTGACACTCACAA+TGG | + | chr8_2:5683289-5683308 | Msa1229740:intron | 45.0% | |
| CCAGATGTGACACTCACAAT+GGG | + | chr8_2:5683290-5683309 | Msa1229740:intron | 45.0% | |
| ! | TTGACTCGTTGAGCACATAC+TGG | + | chr8_2:5683565-5683584 | Msa1229740:CDS | 45.0% |
| TTTCTGACTTAGAATCCGGG+AGG | + | chr8_2:5683604-5683623 | Msa1229740:CDS | 45.0% | |
| ACCCAATCACAACCTGAAGA+TGG | - | chr8_2:5683714-5683733 | None:intergenic | 45.0% | |
| GAACAATCAACCAAGCTCCT+GGG | - | chr8_2:5683749-5683768 | None:intergenic | 45.0% | |
| CTTGAGGTTCGGATAGAAGA+TGG | - | chr8_2:5683869-5683888 | None:intergenic | 45.0% | |
| CTTCTATCCGAACCTCAAGA+TGG | + | chr8_2:5683870-5683889 | Msa1229740:CDS | 45.0% | |
| ATTGCCTCCATCTTGAGGTT+CGG | - | chr8_2:5683880-5683899 | None:intergenic | 45.0% | |
| AGAAGATTGCCTCCATCTTG+AGG | - | chr8_2:5683885-5683904 | None:intergenic | 45.0% | |
| ! | GAAAAACTCGCCACCCTTTT+CGG | - | chr8_2:5683931-5683950 | None:intergenic | 45.0% |
| CATGAGAACTGTGGCTTCTA+CGG | + | chr8_2:5683968-5683987 | Msa1229740:CDS | 45.0% | |
| ! | CTACTTTGGGGACTAGGTAT+TGG | - | chr8_2:5683999-5684018 | None:intergenic | 45.0% |
| ATACCTAGTCCCCAAAGTAG+CGG | + | chr8_2:5683999-5684018 | Msa1229740:CDS | 45.0% | |
| ! | ACCAAAGTCTCCGCTACTTT+GGG | - | chr8_2:5684012-5684031 | None:intergenic | 45.0% |
| ATGACAAACCCTCCAACAAC+CGG | - | chr8_2:5684044-5684063 | None:intergenic | 45.0% | |
| GTCATGAGCTGTAGAGTTCA+AGG | + | chr8_2:5684059-5684078 | Msa1229740:CDS | 45.0% | |
| AGCTGTAGAGTTCAAGGTGA+AGG | + | chr8_2:5684065-5684084 | Msa1229740:CDS | 45.0% | |
| CTTCTGATCTTCCTTCGGAA+AGG | - | chr8_2:5684206-5684225 | None:intergenic | 45.0% | |
| TTCCGAAGGAAGATCAGAAG+AGG | + | chr8_2:5684206-5684225 | Msa1229740:CDS | 45.0% | |
| TCCGAAGGAAGATCAGAAGA+GGG | + | chr8_2:5684207-5684226 | Msa1229740:CDS | 45.0% | |
| TCCCTCTTCTGATCTTCCTT+CGG | - | chr8_2:5684211-5684230 | None:intergenic | 45.0% | |
| GGAAGATCAGAAGAGGGATT+CGG | + | chr8_2:5684213-5684232 | Msa1229740:CDS | 45.0% | |
| CAACTGAGCTATGCTCACGA+GGG | + | chr8_2:5681940-5681959 | Msa1229740:intron | 50.0% | |
| TGGATCCCCAGGCCTTTATT+AGG | + | chr8_2:5682148-5682167 | Msa1229740:CDS | 50.0% | |
| TAGGTTGTCGATAGGCTCTC+TGG | + | chr8_2:5682167-5682186 | Msa1229740:CDS | 50.0% | |
| AGGTTGTCGATAGGCTCTCT+GGG | + | chr8_2:5682168-5682187 | Msa1229740:CDS | 50.0% | |
| CTTCGGCAGAGGTTATCAAG+GGG | - | chr8_2:5682308-5682327 | None:intergenic | 50.0% | |
| GCGATCTCCAAACATGCATG+AGG | - | chr8_2:5682420-5682439 | None:intergenic | 50.0% | |
| !! | CGCCGTATTTTCAGGGAAGA+AGG | + | chr8_2:5682437-5682456 | Msa1229740:CDS | 50.0% |
| GGGAAGAAGGGATCTCATTG+TGG | + | chr8_2:5682450-5682469 | Msa1229740:CDS | 50.0% | |
| ! | AAATGCAGGTTGGCCCTGAA+TGG | + | chr8_2:5682508-5682527 | Msa1229740:CDS | 50.0% |
| ! | AATGCAGGTTGGCCCTGAAT+GGG | + | chr8_2:5682509-5682528 | Msa1229740:CDS | 50.0% |
| GTTTCCCTTCACCCCATTCA+GGG | - | chr8_2:5682524-5682543 | None:intergenic | 50.0% | |
| ! | CGGAACACGTATCTAGGATC+AGG | - | chr8_2:5682642-5682661 | None:intergenic | 50.0% |
| CCTTGCAGCAGAACTATCTG+AGG | - | chr8_2:5682690-5682709 | None:intergenic | 50.0% | |
| ! | CCTCAGATAGTTCTGCTGCA+AGG | + | chr8_2:5682687-5682706 | Msa1229740:CDS | 50.0% |
| CCCATTGTGAGTGTCACATC+TGG | - | chr8_2:5683293-5683312 | None:intergenic | 50.0% | |
| TGACACTCACAATGGGACAG+AGG | + | chr8_2:5683297-5683316 | Msa1229740:intron | 50.0% | |
| GACACTCACAATGGGACAGA+GGG | + | chr8_2:5683298-5683317 | Msa1229740:intron | 50.0% | |
| CTCGTTGAGCACATACTGGT+CGG | + | chr8_2:5683569-5683588 | Msa1229740:CDS | 50.0% | |
| TCGTTGAGCACATACTGGTC+GGG | + | chr8_2:5683570-5683589 | Msa1229740:CDS | 50.0% | |
| GAGAGAGAGAAAAGGGTGGA+AGG | + | chr8_2:5683626-5683645 | Msa1229740:CDS | 50.0% | |
| AATCAACCAAGCTCCTGGGT+TGG | - | chr8_2:5683745-5683764 | None:intergenic | 50.0% | |
| CGAACAATCAACCAAGCTCC+TGG | - | chr8_2:5683750-5683769 | None:intergenic | 50.0% | |
| GTTGATTGTTCGTCCCGATG+TGG | + | chr8_2:5683758-5683777 | Msa1229740:CDS | 50.0% | |
| ATTGTTCGTCCCGATGTGGT+TGG | + | chr8_2:5683762-5683781 | Msa1229740:CDS | 50.0% | |
| TCGGATCTACCAACCACATC+GGG | - | chr8_2:5683774-5683793 | None:intergenic | 50.0% | |
| CTCGGATCTACCAACCACAT+CGG | - | chr8_2:5683775-5683794 | None:intergenic | 50.0% | |
| CATGCTTCAAGCTTTCCCCA+CGG | - | chr8_2:5683807-5683826 | None:intergenic | 50.0% | |
| CTATCCGAACCTCAAGATGG+AGG | + | chr8_2:5683873-5683892 | Msa1229740:CDS | 50.0% | |
| ! | CCAAAGTCTCCGCTACTTTG+GGG | - | chr8_2:5684011-5684030 | None:intergenic | 50.0% |
| CACCAAAGTCTCCGCTACTT+TGG | - | chr8_2:5684013-5684032 | None:intergenic | 50.0% | |
| ! | AGACTTTGGTGCACTGAGTC+CGG | + | chr8_2:5684022-5684041 | Msa1229740:CDS | 50.0% |
| GTTCAAGGTGAAGGAAAGCG+TGG | + | chr8_2:5684074-5684093 | Msa1229740:CDS | 50.0% | |
| CGCAATGCCAGCTGTACTAA+TGG | - | chr8_2:5684104-5684123 | None:intergenic | 50.0% | |
| AATGCTGAGGTCAACAGCTG+CGG | - | chr8_2:5684171-5684190 | None:intergenic | 50.0% | |
| AGCTGTTGACCTCAGCATTG+AGG | + | chr8_2:5684172-5684191 | Msa1229740:CDS | 50.0% | |
| ! | CTGAGAGTGCACAGATCACG+AGG | - | chr8_2:5680186-5680205 | None:intergenic | 55.0% |
| TTGGATGAAAAGAGGGGGGG+TGG | + | chr8_2:5681102-5681121 | Msa1229740:intron | 55.0% | |
| TTATCGCAACCTTGGCGACC+AGG | + | chr8_2:5681281-5681300 | Msa1229740:intron | 55.0% | |
| AAAGTCCGGGGTTCAAACCC+CGG | - | chr8_2:5681896-5681915 | None:intergenic | 55.0% | |
| CCTCGTGAGCATAGCTCAGT+TGG | - | chr8_2:5681942-5681961 | None:intergenic | 55.0% | |
| CCAACTGAGCTATGCTCACG+AGG | + | chr8_2:5681939-5681958 | Msa1229740:intron | 55.0% | |
| ! | ATGCAGGTTGGCCCTGAATG+GGG | + | chr8_2:5682510-5682529 | Msa1229740:CDS | 55.0% |
| TTGGCCCTGAATGGGGTGAA+GGG | + | chr8_2:5682517-5682536 | Msa1229740:CDS | 55.0% | |
| GGTTTCCCTTCACCCCATTC+AGG | - | chr8_2:5682525-5682544 | None:intergenic | 55.0% | |
| TCCGGGAGGAGAGAGAGAAA+AGG | + | chr8_2:5683618-5683637 | Msa1229740:CDS | 55.0% | |
| ! | CCCTTTTCTCTCTCTCCTCC+CGG | - | chr8_2:5683622-5683641 | None:intergenic | 55.0% |
| CCGGGAGGAGAGAGAGAAAA+GGG | + | chr8_2:5683619-5683638 | Msa1229740:CDS | 55.0% | |
| GGAGGAGAGAGAGAAAAGGG+TGG | + | chr8_2:5683622-5683641 | Msa1229740:CDS | 55.0% | |
| TGGGTTGCAAGATCCAACCC+AGG | + | chr8_2:5683729-5683748 | Msa1229740:CDS | 55.0% | |
| CAAGATCCAACCCAGGAGCT+TGG | + | chr8_2:5683736-5683755 | Msa1229740:CDS | 55.0% | |
| !! | TGGTTGGTAGATCCGAGAGC+TGG | + | chr8_2:5683778-5683797 | Msa1229740:CDS | 55.0% |
| CGTGGGGAAAGCTTGAAGCA+TGG | + | chr8_2:5683805-5683824 | Msa1229740:CDS | 55.0% | |
| ! | TCTCCGCTACTTTGGGGACT+AGG | - | chr8_2:5684005-5684024 | None:intergenic | 55.0% |
| ! | CCCCAAAGTAGCGGAGACTT+TGG | + | chr8_2:5684008-5684027 | Msa1229740:CDS | 55.0% |
| CACTGAGTCCGGTTGTTGGA+GGG | + | chr8_2:5684033-5684052 | Msa1229740:CDS | 55.0% | |
| GGAGGATGCTGCCATCTTCA+TGG | + | chr8_2:5684139-5684158 | Msa1229740:CDS | 55.0% | |
| TGCGGCAAGTGCCATGAAGA+TGG | - | chr8_2:5684153-5684172 | None:intergenic | 55.0% | |
| GCTTGCATGCCTCAATGCTG+AGG | - | chr8_2:5684184-5684203 | None:intergenic | 55.0% | |
| AGGCATGCAAGCCTTTCCGA+AGG | + | chr8_2:5684192-5684211 | Msa1229740:CDS | 55.0% | |
| TCATGATGGCCTGGTCGCCA+AGG | - | chr8_2:5681293-5681312 | None:intergenic | 60.0% | |
| GTTGGCCCTGAATGGGGTGA+AGG | + | chr8_2:5682516-5682535 | Msa1229740:CDS | 60.0% | |
| GGTGCACTGAGTCCGGTTGT+TGG | + | chr8_2:5684029-5684048 | Msa1229740:CDS | 60.0% | |
| GCACTGAGTCCGGTTGTTGG+AGG | + | chr8_2:5684032-5684051 | Msa1229740:CDS | 60.0% | |
| ATTGCGACACGTGACGTGCG+TGG | + | chr8_2:5684118-5684137 | Msa1229740:CDS | 60.0% | |
| ATCCGAGAGCTGGCAGCCGT+GGG | + | chr8_2:5683788-5683807 | Msa1229740:CDS | 65.0% | |
| CTTGAAGCATGGCGCGAGCG+TGG | + | chr8_2:5683816-5683835 | Msa1229740:CDS | 65.0% | |
| GGTGGCCGGGGTTTGAACCC+CGG | + | chr8_2:5681888-5681907 | Msa1229740:intron | 70.0% | |
| GATCCGAGAGCTGGCAGCCG+TGG | + | chr8_2:5683787-5683806 | Msa1229740:CDS | 70.0% | |
| TCCGAGAGCTGGCAGCCGTG+GGG | + | chr8_2:5683789-5683808 | Msa1229740:CDS | 70.0% | |
| TCCCCACGGCTGCCAGCTCT+CGG | - | chr8_2:5683793-5683812 | None:intergenic | 70.0% | |
| GCGACACGTGACGTGCGTGG+AGG | + | chr8_2:5684121-5684140 | Msa1229740:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 5680060 | 5684469 | 5680060 | ID=Msa1229740;Name=Msa1229740 |
| chr8_2 | mRNA | 5680060 | 5684469 | 5680060 | ID=Msa1229740-mRNA-1;Parent=Msa1229740;Name=Msa1229740-mRNA-1;_AED=0.13;_eAED=0.13;_QI=328|1|1|1|0.5|0.33|3|222|433 |
| chr8_2 | exon | 5680060 | 5680325 | 5680060 | ID=Msa1229740-mRNA-1:exon:1933;Parent=Msa1229740-mRNA-1 |
| chr8_2 | exon | 5682085 | 5682754 | 5682085 | ID=Msa1229740-mRNA-1:exon:1934;Parent=Msa1229740-mRNA-1 |
| chr8_2 | exon | 5683554 | 5684469 | 5683554 | ID=Msa1229740-mRNA-1:exon:1935;Parent=Msa1229740-mRNA-1 |
| chr8_2 | five_prime_UTR | 5680060 | 5680325 | 5680060 | ID=Msa1229740-mRNA-1:five_prime_utr;Parent=Msa1229740-mRNA-1 |
| chr8_2 | five_prime_UTR | 5682085 | 5682146 | 5682085 | ID=Msa1229740-mRNA-1:five_prime_utr;Parent=Msa1229740-mRNA-1 |
| chr8_2 | CDS | 5682147 | 5682754 | 5682147 | ID=Msa1229740-mRNA-1:cds;Parent=Msa1229740-mRNA-1 |
| chr8_2 | CDS | 5683554 | 5684247 | 5683554 | ID=Msa1229740-mRNA-1:cds;Parent=Msa1229740-mRNA-1 |
| chr8_2 | three_prime_UTR | 5684248 | 5684469 | 5684248 | ID=Msa1229740-mRNA-1:three_prime_utr;Parent=Msa1229740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
