AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0689560


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0689560 MtrunA17_Chr7g0222821 97.449 196 5 0 1 196 1 196 9.61e-139 385
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0689560 AT5G11900.1 77.387 199 41 2 1 196 1 198 3.28e-107 306

Find 59 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAAAGAAAATTGCTCTTTC+TGG 0.074045 4_4:+56656218 None:intergenic
TTAGCCATTAAACATATATT+AGG 0.166614 4_4:-56656050 Msa0689560:three_prime_UTR
ATGCCCTAATATATGTTTAA+TGG 0.250523 4_4:+56656046 None:intergenic
CTTTATAGAAGATGGGAAAA+AGG 0.276019 4_4:-56656201 Msa0689560:CDS
CCTCCTGAATATTGCGAATT+CGG 0.299996 4_4:-56659463 Msa0689560:CDS
GGAAGACGCTTGACCTCTTC+TGG 0.307162 4_4:+56658234 None:intergenic
GGTATAAATCGGGTACGTTT+TGG 0.311925 4_4:+56659404 None:intergenic
TAGAGGCAAAAGAATGAAAA+AGG 0.327300 4_4:-56655973 Msa0689560:three_prime_UTR
GCTGCTGGTGCTGCTTCATC+AGG 0.328517 4_4:-56659194 Msa0689560:intron
CCGCCGAATTCGCAATATTC+AGG 0.334612 4_4:+56659460 None:intergenic
GAAGAGGTCAAGCGTCTTCC+AGG 0.339781 4_4:-56658231 Msa0689560:CDS
TAGCCATTAAACATATATTA+GGG 0.341112 4_4:-56656049 Msa0689560:three_prime_UTR
ATGATACCGTTAAGAAGATT+AGG 0.342031 4_4:+56659382 None:intergenic
TTTCTTCACAGATAACTCTT+AGG 0.344331 4_4:+56655887 None:intergenic
AGGTGGGAAGGTAAAGAAAA+AGG 0.345795 4_4:-56658211 Msa0689560:intron
CAATTTGCTCTTTCTCAGTT+GGG 0.350955 4_4:+56656937 None:intergenic
GGGTTTACATTTCTCAAAAT+CGG 0.356886 4_4:+56659435 None:intergenic
AAGAAGATTAGGGTATAAAT+CGG 0.388595 4_4:+56659393 None:intergenic
TTATACCCTAATCTTCTTAA+CGG 0.393928 4_4:-56659388 Msa0689560:intron
GTATAATACACGAACAGGTT+GGG 0.398021 4_4:+56659504 None:intergenic
TCAATTTGCTCTTTCTCAGT+TGG 0.404644 4_4:+56656936 None:intergenic
CAGGAGGTAAACTGCATACT+TGG 0.429019 4_4:+56659479 None:intergenic
GCTGCTTCTAGTGCTGCTGC+TGG 0.448970 4_4:-56659209 Msa0689560:CDS
TGGCAGTATAATACACGAAC+AGG 0.454220 4_4:+56659499 None:intergenic
GAGGTGAATGAGAAGGAAGT+TGG 0.464532 4_4:-56659272 Msa0689560:CDS
GCTGATAAGTTACAAGGAAC+TGG 0.464731 4_4:-56659242 Msa0689560:CDS
TGATACCGTTAAGAAGATTA+GGG 0.480612 4_4:+56659383 None:intergenic
AATAGTCAAAATCAAGCAGC+TGG 0.484188 4_4:+56656176 None:intergenic
AAAGGAATGGCTGATAAACT+TGG 0.487807 4_4:-56656096 Msa0689560:three_prime_UTR
GAAAAGTTCCAAGCCTTTCA+CGG 0.501659 4_4:+56658023 None:intergenic
AAATCTATCACCACCGTGAA+AGG 0.502555 4_4:-56658036 Msa0689560:CDS
TTGTGTAGAGGTGAATGAGA+AGG 0.511630 4_4:-56659279 Msa0689560:intron
AGTATAATACACGAACAGGT+TGG 0.512737 4_4:+56659503 None:intergenic
TATAATACACGAACAGGTTG+GGG 0.517566 4_4:+56659505 None:intergenic
AATGAACTGTGTGCGTATAG+AGG 0.526626 4_4:-56655990 Msa0689560:three_prime_UTR
TATCACCACCGTGAAAGGCT+TGG 0.527509 4_4:-56658031 Msa0689560:CDS
TACAGGAGCCTCCGTTGTCA+AGG 0.546128 4_4:-56657045 Msa0689560:intron
GCAAGAGGTTATTATTGAGA+AGG 0.547028 4_4:-56658076 Msa0689560:CDS
AGAAGATTAGGGTATAAATC+GGG 0.556799 4_4:+56659394 None:intergenic
AGTGATGCTTCAAAGAAACT+CGG 0.567510 4_4:-56657080 Msa0689560:CDS
AAAGAGCAAATTGATGTACA+AGG 0.568292 4_4:-56656927 Msa0689560:CDS
GTGATGCTTCAAAGAAACTC+GGG 0.575928 4_4:-56657079 Msa0689560:CDS
CAAGCGTCTTCCAGGTGGGA+AGG 0.593558 4_4:-56658223 Msa0689560:CDS
ATTAAACATATATTAGGGCA+TGG 0.599403 4_4:-56656044 Msa0689560:three_prime_UTR
TGGAATTCATTACAGATACA+TGG 0.609023 4_4:-56656884 Msa0689560:CDS
AAGAGCAAATTGATGTACAA+GGG 0.610474 4_4:-56656926 Msa0689560:CDS
AAAGTTGCTGATAAGTTACA+AGG 0.616934 4_4:-56659248 Msa0689560:CDS
AGAGCAAATTGATGTACAAG+GGG 0.617172 4_4:-56656925 Msa0689560:CDS
TTTGGCAGGGAAGCCAGAAG+AGG 0.636115 4_4:-56658247 Msa0689560:intron
ATTTAACTGAAAATACACAT+AGG 0.636288 4_4:+56656020 None:intergenic
GAGGTCAAGCGTCTTCCAGG+TGG 0.642206 4_4:-56658228 Msa0689560:CDS
AGGTCAAGCGTCTTCCAGGT+GGG 0.653523 4_4:-56658227 Msa0689560:CDS
GGATATATCTTATGACGTCG+TGG 0.658599 4_4:-56656904 Msa0689560:CDS
CCTGAATATTGCGAATTCGG+CGG 0.662956 4_4:-56659460 Msa0689560:CDS
CCAATAAACCTTGACAACGG+AGG 0.664564 4_4:+56657037 None:intergenic
ATATCAGTGCATAATAACAA+TGG 0.665339 4_4:-56659536 Msa0689560:exon
CCGAATTCGCAATATTCAGG+AGG 0.677567 4_4:+56659463 None:intergenic
AAGCCAATAAACCTTGACAA+CGG 0.722782 4_4:+56657034 None:intergenic
AAGTTCCAAGCCTTTCACGG+TGG 0.743968 4_4:+56658026 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGTTATTTGAATATAAATT+TGG - chr4_4:56656391-56656410 Msa0689560:intron 10.0%
!!! TGTTATTTGAATATAAATTT+GGG - chr4_4:56656392-56656411 Msa0689560:intron 10.0%
!! ATTGTATAAAAAAATAAAAC+AGG + chr4_4:56658049-56658068 None:intergenic 10.0%
!! AATAAATCACATTAACAAAA+AGG + chr4_4:56656110-56656129 None:intergenic 15.0%
!! AAAAAAAAAACTCAAAATCA+TGG + chr4_4:56656344-56656363 None:intergenic 15.0%
!! ATTAATCACATTCAAATTTA+TGG + chr4_4:56656531-56656550 None:intergenic 15.0%
!! AAATATCAATTGCTAAATAT+GGG + chr4_4:56657598-56657617 None:intergenic 15.0%
!! TAAATATCAATTGCTAAATA+TGG + chr4_4:56657599-56657618 None:intergenic 15.0%
!! AAAGAGATACAATAAAAAAA+TGG + chr4_4:56657714-56657733 None:intergenic 15.0%
!!! AATAAGAAATTAGATTTTTG+AGG - chr4_4:56657803-56657822 Msa0689560:intron 15.0%
!!! CACTTATACTATTTTTTTAT+TGG - chr4_4:56658469-56658488 Msa0689560:intron 15.0%
!!! GAAAAACATGTTATTTAAAT+AGG - chr4_4:56658687-56658706 Msa0689560:intron 15.0%
!!! TGTAATCATAATGTTTTTAA+TGG + chr4_4:56658787-56658806 None:intergenic 15.0%
!! ATCACAATTACAAAAAATAA+CGG - chr4_4:56658878-56658897 Msa0689560:intron 15.0%
!!! TTATAGATCTATATTTTTCT+AGG + chr4_4:56658989-56659008 None:intergenic 15.0%
!! GACTATTTATAAAAAAACTT+TGG - chr4_4:56659277-56659296 Msa0689560:intron 15.0%
!!! TATCAATATTTTAAGTTAGT+TGG - chr4_4:56659524-56659543 Msa0689560:exon 15.0%
!!! ATCAATATTTTAAGTTAGTT+GGG - chr4_4:56659525-56659544 Msa0689560:exon 15.0%
!!! TAATTATTGTTTTTGTGTAG+AGG - chr4_4:56656146-56656165 Msa0689560:three_prime_UTR 20.0%
!!! GTTTTTTTTTTTTTCAGCAT+TGG - chr4_4:56656353-56656372 Msa0689560:intron 20.0%
!! GAATGTGATTAATCAAATTA+AGG - chr4_4:56656538-56656557 Msa0689560:intron 20.0%
!! ATTTGAAAAGTTGAAAATCA+AGG + chr4_4:56656733-56656752 None:intergenic 20.0%
!! GGTTAATTAAGTTCAATTTA+TGG - chr4_4:56656804-56656823 Msa0689560:intron 20.0%
!! TTAAGTTCAATTTATGGTTA+AGG - chr4_4:56656810-56656829 Msa0689560:intron 20.0%
!! AATAATTTAAAAGCTACAAG+AGG + chr4_4:56656927-56656946 None:intergenic 20.0%
!!! ATTTCTGATTTCTTTTTTTG+AGG - chr4_4:56657074-56657093 Msa0689560:CDS 20.0%
!!! AATTCCCTATTTTGATATTT+TGG - chr4_4:56657172-56657191 Msa0689560:intron 20.0%
!!! TCTTTCTCTTACTTTTTTTT+TGG - chr4_4:56657452-56657471 Msa0689560:intron 20.0%
!!! TTATTTTTTTATTTGGGTTG+AGG - chr4_4:56657616-56657635 Msa0689560:intron 20.0%
!!! TATTTTTTTATTTGGGTTGA+GGG - chr4_4:56657617-56657636 Msa0689560:intron 20.0%
!! ATATTTACATAGCAAAAAAC+TGG - chr4_4:56657912-56657931 Msa0689560:intron 20.0%
!! TATTTACATAGCAAAAAACT+GGG - chr4_4:56657913-56657932 Msa0689560:intron 20.0%
!! ATACTTTCTTTATTACCTTA+TGG + chr4_4:56657969-56657988 None:intergenic 20.0%
!!! TACAATGTTTTCACATTTAT+TGG - chr4_4:56658063-56658082 Msa0689560:CDS 20.0%
!!! ACAATGTTTTCACATTTATT+GGG - chr4_4:56658064-56658083 Msa0689560:CDS 20.0%
!!! TCCTTGTTGAATAATATTTT+TGG - chr4_4:56658159-56658178 Msa0689560:intron 20.0%
!! TCCAAAAATATTATTCAACA+AGG + chr4_4:56658163-56658182 None:intergenic 20.0%
!!! ATAATATTTTTGGAATGTAC+CGG - chr4_4:56658169-56658188 Msa0689560:intron 20.0%
!!! GTTATTTTTTGTAATTGTGA+TGG + chr4_4:56658879-56658898 None:intergenic 20.0%
!! AATATAGATCTATAACTAAG+AGG - chr4_4:56658994-56659013 Msa0689560:intron 20.0%
!!! CAATTTTCTTTATAGAAGAT+GGG - chr4_4:56659229-56659248 Msa0689560:CDS 20.0%
!! TTTATAAAAAAACTTTGGAC+TGG - chr4_4:56659282-56659301 Msa0689560:intron 20.0%
!! TTAGCCATTAAACATATATT+AGG - chr4_4:56659387-56659406 Msa0689560:intron 20.0%
!! TAGCCATTAAACATATATTA+GGG - chr4_4:56659388-56659407 Msa0689560:intron 20.0%
!! ATTTAACTGAAAATACACAT+AGG + chr4_4:56659420-56659439 None:intergenic 20.0%
! ATATCAGTGCATAATAACAA+TGG - chr4_4:56655901-56655920 Msa0689560:three_prime_UTR 25.0%
! AAGAAGATTAGGGTATAAAT+CGG + chr4_4:56656047-56656066 None:intergenic 25.0%
! TTATACCCTAATCTTCTTAA+CGG - chr4_4:56656049-56656068 Msa0689560:three_prime_UTR 25.0%
!! AGTATTCCACAGTTTTTAAA+TGG - chr4_4:56656429-56656448 Msa0689560:intron 25.0%
! CTTTAACCATTTAAAAACTG+TGG + chr4_4:56656438-56656457 None:intergenic 25.0%
! ACTTGGATAATAGTTATATC+AGG - chr4_4:56656468-56656487 Msa0689560:intron 25.0%
! TATGACCAATAATTCAATCT+CGG + chr4_4:56656623-56656642 None:intergenic 25.0%
! GTTAATAGTGTTCAAATTTG+TGG - chr4_4:56656783-56656802 Msa0689560:intron 25.0%
! TTATTGTGTTAGAAATGCAT+TGG - chr4_4:56656942-56656961 Msa0689560:CDS 25.0%
! TATTGTGTTAGAAATGCATT+GGG - chr4_4:56656943-56656962 Msa0689560:intron 25.0%
!! AAACTTGACAACTTTTCAAA+TGG + chr4_4:56657026-56657045 None:intergenic 25.0%
! GGAATTGAATAATAACCAAT+AGG + chr4_4:56657158-56657177 None:intergenic 25.0%
!!! GTAAAGAAAAAGGTATGTTT+TGG - chr4_4:56657236-56657255 Msa0689560:intron 25.0%
! TATGTAGAATAGAATGAAAC+CGG - chr4_4:56657489-56657508 Msa0689560:intron 25.0%
!!! TTTTATTTCTTTCAATCCTC+CGG + chr4_4:56657511-56657530 None:intergenic 25.0%
! AAAAAATGGAATGAGATTAG+TGG + chr4_4:56657700-56657719 None:intergenic 25.0%
! TATTTAAATATGGGAACATG+AGG + chr4_4:56658125-56658144 None:intergenic 25.0%
!! CTAATTTGCATATTCATTTG+TGG - chr4_4:56658619-56658638 Msa0689560:intron 25.0%
! TATCAATTAGAAATAGACCA+TGG + chr4_4:56659042-56659061 None:intergenic 25.0%
! TTTCATTTATAAAGAACCTG+TGG + chr4_4:56659131-56659150 None:intergenic 25.0%
!! TAGAGAACTTTTATGTGATT+TGG - chr4_4:56659172-56659191 Msa0689560:intron 25.0%
! ATAAAGAAAATTGCTCTTTC+TGG + chr4_4:56659222-56659241 None:intergenic 25.0%
!! GCAATTTTCTTTATAGAAGA+TGG - chr4_4:56659228-56659247 Msa0689560:CDS 25.0%
! ATGCCCTAATATATGTTTAA+TGG + chr4_4:56659394-56659413 None:intergenic 25.0%
! ATTAAACATATATTAGGGCA+TGG - chr4_4:56659393-56659412 Msa0689560:CDS 25.0%
GGGTTTACATTTCTCAAAAT+CGG + chr4_4:56656005-56656024 None:intergenic 30.0%
!! ATTTTGAGAAATGTAAACCC+TGG - chr4_4:56656005-56656024 Msa0689560:three_prime_UTR 30.0%
AGAAGATTAGGGTATAAATC+GGG + chr4_4:56656046-56656065 None:intergenic 30.0%
TGATACCGTTAAGAAGATTA+GGG + chr4_4:56656057-56656076 None:intergenic 30.0%
ATGATACCGTTAAGAAGATT+AGG + chr4_4:56656058-56656077 None:intergenic 30.0%
AAAGTTGCTGATAAGTTACA+AGG - chr4_4:56656189-56656208 Msa0689560:CDS 30.0%
!! TGAATGTTGATGATGAAGAA+TGG - chr4_4:56656296-56656315 Msa0689560:intron 30.0%
ATGACCAATAATTCAATCTC+GGG + chr4_4:56656622-56656641 None:intergenic 30.0%
CAAGGTTAATTGCATTTCTT+TGG + chr4_4:56656715-56656734 None:intergenic 30.0%
! CAACTTTTCAAATCTACAAG+TGG - chr4_4:56656740-56656759 Msa0689560:intron 30.0%
GTCTATAGGTATATGAAGAT+TGG + chr4_4:56656842-56656861 None:intergenic 30.0%
CACTAATATTGTGTTTGTAG+TGG + chr4_4:56656992-56657011 None:intergenic 30.0%
CCTGCCAAAATATCAAAATA+GGG + chr4_4:56657179-56657198 None:intergenic 30.0%
!!! CCTATTTTGATATTTTGGCA+GGG - chr4_4:56657177-56657196 Msa0689560:intron 30.0%
TGATCACATCAATCAAATGA+TGG + chr4_4:56657315-56657334 None:intergenic 30.0%
!!! TCCAGTGTTTTGAAATGAAA+TGG - chr4_4:56657537-56657556 Msa0689560:intron 30.0%
TCCATTTCATTTCAAAACAC+TGG + chr4_4:56657541-56657560 None:intergenic 30.0%
GCAATGAAATAGATTATACG+AGG - chr4_4:56657658-56657677 Msa0689560:intron 30.0%
TTGCACAATTCTAGATATGT+TGG - chr4_4:56657741-56657760 Msa0689560:intron 30.0%
ATTCTAGATATGTTGGAGTA+CGG - chr4_4:56657748-56657767 Msa0689560:intron 30.0%
! TTTTCCAAAAAACTAGGCTA+TGG - chr4_4:56657773-56657792 Msa0689560:intron 30.0%
!!! ATTACCATAGCCTAGTTTTT+TGG + chr4_4:56657780-56657799 None:intergenic 30.0%
!! CCAATTCTAGTTTCTTATTC+AGG + chr4_4:56657846-56657865 None:intergenic 30.0%
CCTGAATAAGAAACTAGAAT+TGG - chr4_4:56657843-56657862 Msa0689560:intron 30.0%
! TGTCACTTGAAACTGAAATT+AGG - chr4_4:56657882-56657901 Msa0689560:intron 30.0%
GTCACTTGAAACTGAAATTA+GGG - chr4_4:56657883-56657902 Msa0689560:intron 30.0%
TCACTTGAAACTGAAATTAG+GGG - chr4_4:56657884-56657903 Msa0689560:intron 30.0%
CAAAAAACTGGGTAATTGTA+TGG - chr4_4:56657924-56657943 Msa0689560:intron 30.0%
AAGTTGGAAAAGAATCCATA+AGG - chr4_4:56657951-56657970 Msa0689560:intron 30.0%
AATTAAAGCCACATACGTAA+CGG + chr4_4:56658219-56658238 None:intergenic 30.0%
!!! TACGTATGTGGCTTTAATTT+TGG - chr4_4:56658220-56658239 Msa0689560:CDS 30.0%
TGCTGCATTATAAAAACCTA+CGG + chr4_4:56658257-56658276 None:intergenic 30.0%
TATCATTACATACACGTCAT+TGG - chr4_4:56658292-56658311 Msa0689560:intron 30.0%
ATGCATAGTTGCTTAATAGT+TGG - chr4_4:56658439-56658458 Msa0689560:intron 30.0%
!!! ACTATTTTTTTATTGGCGTC+AGG - chr4_4:56658476-56658495 Msa0689560:intron 30.0%
!!! CTATTTTTTTATTGGCGTCA+GGG - chr4_4:56658477-56658496 Msa0689560:intron 30.0%
AAAGAGCAAATTGATGTACA+AGG - chr4_4:56658510-56658529 Msa0689560:intron 30.0%
AAGAGCAAATTGATGTACAA+GGG - chr4_4:56658511-56658530 Msa0689560:intron 30.0%
TGGAATTCATTACAGATACA+TGG - chr4_4:56658553-56658572 Msa0689560:intron 30.0%
!!! ATACTGGTGGATTTTTACTT+GGG - chr4_4:56658647-56658666 Msa0689560:intron 30.0%
AAGTGTTTCATAAATCCCTT+AGG + chr4_4:56658733-56658752 None:intergenic 30.0%
ATGAAACACTTCATTAACCT+AGG - chr4_4:56658742-56658761 Msa0689560:intron 30.0%
ATAGATCTATAACTAAGAGG+TGG - chr4_4:56658997-56659016 Msa0689560:intron 30.0%
TGCATAATATAAAGAGAGCT+AGG + chr4_4:56659103-56659122 None:intergenic 30.0%
! CATAAAAGTTCTCTAGTCTT+GGG + chr4_4:56659167-56659186 None:intergenic 30.0%
ACATAAAAGTTCTCTAGTCT+TGG + chr4_4:56659168-56659187 None:intergenic 30.0%
CTTTATAGAAGATGGGAAAA+AGG - chr4_4:56659236-56659255 Msa0689560:CDS 30.0%
! ATAAAAAAACTTTGGACTGG+TGG - chr4_4:56659285-56659304 Msa0689560:intron 30.0%
!! AAAAGAATCAGCTATTTTGC+TGG - chr4_4:56659312-56659331 Msa0689560:intron 30.0%
! CTATTTTGCTGGATTTTGAA+AGG - chr4_4:56659323-56659342 Msa0689560:intron 30.0%
TAGAGGCAAAAGAATGAAAA+AGG - chr4_4:56659464-56659483 Msa0689560:CDS 30.0%
TATAATACACGAACAGGTTG+GGG + chr4_4:56655935-56655954 None:intergenic 35.0%
GTATAATACACGAACAGGTT+GGG + chr4_4:56655936-56655955 None:intergenic 35.0%
AGTATAATACACGAACAGGT+TGG + chr4_4:56655937-56655956 None:intergenic 35.0%
GTTAAAGCAGTTTGCATACT+TGG - chr4_4:56656451-56656470 Msa0689560:intron 35.0%
AGAACCCGAGATTGAATTAT+TGG - chr4_4:56656615-56656634 Msa0689560:intron 35.0%
ACACAGCATAAGTTGTCTAT+AGG + chr4_4:56656856-56656875 None:intergenic 35.0%
AACAGAGAGAAACAACATTC+AGG + chr4_4:56657106-56657125 None:intergenic 35.0%
!!! CCCTATTTTGATATTTTGGC+AGG - chr4_4:56657176-56657195 Msa0689560:intron 35.0%
CCCTGCCAAAATATCAAAAT+AGG + chr4_4:56657180-56657199 None:intergenic 35.0%
! AGATGCGATGTTTTCTTTTC+AGG - chr4_4:56657334-56657353 Msa0689560:intron 35.0%
GCAAGAGGTTATTATTGAGA+AGG - chr4_4:56657361-56657380 Msa0689560:intron 35.0%
!!! TTTTTTATTTGGGTTGAGGG+AGG - chr4_4:56657620-56657639 Msa0689560:intron 35.0%
TGAGATTAGTGGCTGATATT+CGG + chr4_4:56657689-56657708 None:intergenic 35.0%
TTCTAGATATGTTGGAGTAC+GGG - chr4_4:56657749-56657768 Msa0689560:intron 35.0%
TTGAAACTGAAATTAGGGGA+GGG - chr4_4:56657888-56657907 Msa0689560:intron 35.0%
AAACTGGGTAATTGTATGGT+AGG - chr4_4:56657928-56657947 Msa0689560:intron 35.0%
GTAATTGTATGGTAGGAAGT+TGG - chr4_4:56657935-56657954 Msa0689560:intron 35.0%
AACATGATCGACAGAAGAAT+GGG - chr4_4:56658015-56658034 Msa0689560:intron 35.0%
! TGTTTTCACATTTATTGGGC+TGG - chr4_4:56658068-56658087 Msa0689560:CDS 35.0%
! GTTTTCACATTTATTGGGCT+GGG - chr4_4:56658069-56658088 Msa0689560:CDS 35.0%
! TTTTCACATTTATTGGGCTG+GGG - chr4_4:56658070-56658089 Msa0689560:CDS 35.0%
! CGACACTTTTATTGCATTTC+AGG - chr4_4:56658324-56658343 Msa0689560:intron 35.0%
AGTGATGCTTCAAAGAAACT+CGG - chr4_4:56658357-56658376 Msa0689560:intron 35.0%
AAGCCAATAAACCTTGACAA+CGG + chr4_4:56658406-56658425 None:intergenic 35.0%
!! GTTTATTGGCTTCTACGTAA+TGG - chr4_4:56658414-56658433 Msa0689560:intron 35.0%
! CAATTTGCTCTTTCTCAGTT+GGG + chr4_4:56658503-56658522 None:intergenic 35.0%
! TCAATTTGCTCTTTCTCAGT+TGG + chr4_4:56658504-56658523 None:intergenic 35.0%
AGAGCAAATTGATGTACAAG+GGG - chr4_4:56658512-56658531 Msa0689560:intron 35.0%
AAAAGAATAACACTCACGTC+AGG + chr4_4:56658579-56658598 None:intergenic 35.0%
TTCATTTGTGGAAGAGATAC+TGG - chr4_4:56658631-56658650 Msa0689560:intron 35.0%
!!! GATACTGGTGGATTTTTACT+TGG - chr4_4:56658646-56658665 Msa0689560:intron 35.0%
AACATTGGATGTGTTTCTTG+TGG + chr4_4:56658836-56658855 None:intergenic 35.0%
!! TACGCTAGTGTTTTAAACAG+CGG + chr4_4:56658932-56658951 None:intergenic 35.0%
TATATTATGCATCATGCCAC+AGG - chr4_4:56659112-56659131 Msa0689560:intron 35.0%
GAAATCTATCTTCCTTCTTC+AGG - chr4_4:56659194-56659213 Msa0689560:intron 35.0%
AATAGTCAAAATCAAGCAGC+TGG + chr4_4:56659264-56659283 None:intergenic 35.0%
!! TTGCTGGATTTTGAAAGGAA+TGG - chr4_4:56659328-56659347 Msa0689560:intron 35.0%
AAAGGAATGGCTGATAAACT+TGG - chr4_4:56659341-56659360 Msa0689560:intron 35.0%
TGGCAGTATAATACACGAAC+AGG + chr4_4:56655941-56655960 None:intergenic 40.0%
CCTCCTGAATATTGCGAATT+CGG - chr4_4:56655974-56655993 Msa0689560:three_prime_UTR 40.0%
! GGTATAAATCGGGTACGTTT+TGG + chr4_4:56656036-56656055 None:intergenic 40.0%
TTGTGTAGAGGTGAATGAGA+AGG - chr4_4:56656158-56656177 Msa0689560:three_prime_UTR 40.0%
GCTGATAAGTTACAAGGAAC+TGG - chr4_4:56656195-56656214 Msa0689560:CDS 40.0%
TTCCAGTCAGGATTCAATCT+CGG + chr4_4:56656583-56656602 None:intergenic 40.0%
TTAAACCCTCAGGTTACCAA+GGG + chr4_4:56656690-56656709 None:intergenic 40.0%
!! TTCTTTGGTCTTAAACCCTC+AGG + chr4_4:56656700-56656719 None:intergenic 40.0%
CTACAAGTGGTTGAAATGCA+TGG - chr4_4:56656753-56656772 Msa0689560:intron 40.0%
! AAGCTACAAGAGGTAGCTTT+TGG + chr4_4:56656917-56656936 None:intergenic 40.0%
GTTAGAAATGCATTGGGAAG+TGG - chr4_4:56656949-56656968 Msa0689560:intron 40.0%
GTTTGTAGTGGCGTTTAGTT+AGG + chr4_4:56656980-56656999 None:intergenic 40.0%
! TTTTTCTTTACCTTCCCACC+TGG + chr4_4:56657227-56657246 None:intergenic 40.0%
AGGTGGGAAGGTAAAGAAAA+AGG - chr4_4:56657226-56657245 Msa0689560:intron 40.0%
!! TTCTTTTCAGGACAAGCAAG+AGG - chr4_4:56657346-56657365 Msa0689560:intron 40.0%
AAATCTATCACCACCGTGAA+AGG - chr4_4:56657401-56657420 Msa0689560:intron 40.0%
GAAAAGTTCCAAGCCTTTCA+CGG + chr4_4:56657417-56657436 None:intergenic 40.0%
! GTGAAAGGCTTGGAACTTTT+CGG - chr4_4:56657416-56657435 Msa0689560:intron 40.0%
GTAGAATAGAATGAAACCGG+AGG - chr4_4:56657492-56657511 Msa0689560:intron 40.0%
GAGATTAGTGGCTGATATTC+GGG + chr4_4:56657688-56657707 None:intergenic 40.0%
TCTAGATATGTTGGAGTACG+GGG - chr4_4:56657750-56657769 Msa0689560:intron 40.0%
! ACGGGGTTTTCCAAAAAACT+AGG - chr4_4:56657767-56657786 Msa0689560:intron 40.0%
CTTGAAACTGAAATTAGGGG+AGG - chr4_4:56657887-56657906 Msa0689560:intron 40.0%
TGAAACTGAAATTAGGGGAG+GGG - chr4_4:56657889-56657908 Msa0689560:intron 40.0%
CAACATGATCGACAGAAGAA+TGG - chr4_4:56658014-56658033 Msa0689560:intron 40.0%
ACATGATCGACAGAAGAATG+GGG - chr4_4:56658016-56658035 Msa0689560:intron 40.0%
! TTTCACATTTATTGGGCTGG+GGG - chr4_4:56658071-56658090 Msa0689560:CDS 40.0%
GGTACTTATGGATACGTATC+CGG + chr4_4:56658191-56658210 None:intergenic 40.0%
! TTTGGAGTACATTTGTCCGT+AGG - chr4_4:56658238-56658257 Msa0689560:CDS 40.0%
GTGATGCTTCAAAGAAACTC+GGG - chr4_4:56658358-56658377 Msa0689560:intron 40.0%
GGATATATCTTATGACGTCG+TGG - chr4_4:56658533-56658552 Msa0689560:intron 40.0%
ATTTGTGGAAGAGATACTGG+TGG - chr4_4:56658634-56658653 Msa0689560:intron 40.0%
GTTTCATAAATCCCTTAGGC+TGG + chr4_4:56658729-56658748 None:intergenic 40.0%
CCTTTCAGCACTTATATCCT+AGG + chr4_4:56658762-56658781 None:intergenic 40.0%
!! CCTAGGATATAAGTGCTGAA+AGG - chr4_4:56658759-56658778 Msa0689560:intron 40.0%
TTGGATGTGTTTCTTGTGGT+GGG + chr4_4:56658832-56658851 None:intergenic 40.0%
ATTGGATGTGTTTCTTGTGG+TGG + chr4_4:56658833-56658852 None:intergenic 40.0%
! ACTGGTCTACGCATAAACAT+TGG + chr4_4:56658851-56658870 None:intergenic 40.0%
!! GTAATTGTGATGGACAACAC+TGG + chr4_4:56658869-56658888 None:intergenic 40.0%
! GGTTTGTTCAAAATCTGCCT+AGG - chr4_4:56658899-56658918 Msa0689560:intron 40.0%
TCTATAACTAAGAGGTGGTG+AGG - chr4_4:56659002-56659021 Msa0689560:intron 40.0%
AGGTTGTGTTCTATCTTCCA+TGG - chr4_4:56659022-56659041 Msa0689560:intron 40.0%
AATGAACTGTGTGCGTATAG+AGG - chr4_4:56659447-56659466 Msa0689560:CDS 40.0%
CAGGAGGTAAACTGCATACT+TGG + chr4_4:56655961-56655980 None:intergenic 45.0%
CCGAATTCGCAATATTCAGG+AGG + chr4_4:56655977-56655996 None:intergenic 45.0%
CCTGAATATTGCGAATTCGG+CGG - chr4_4:56655977-56655996 Msa0689560:three_prime_UTR 45.0%
!! GGTACGTTTTGGATCAACCA+GGG + chr4_4:56656025-56656044 None:intergenic 45.0%
GAGGTGAATGAGAAGGAAGT+TGG - chr4_4:56656165-56656184 Msa0689560:three_prime_UTR 45.0%
TCCAGTCAGGATTCAATCTC+GGG + chr4_4:56656582-56656601 None:intergenic 45.0%
TTGAATCCTGACTGGAACGA+TGG - chr4_4:56656586-56656605 Msa0689560:intron 45.0%
ATTGCTAGGTCTCTTTCCCT+TGG - chr4_4:56656671-56656690 Msa0689560:intron 45.0%
! TCTTTCCCTTGGTAACCTGA+GGG - chr4_4:56656682-56656701 Msa0689560:intron 45.0%
CTTAAACCCTCAGGTTACCA+AGG + chr4_4:56656691-56656710 None:intergenic 45.0%
! TTTTCTTTTGTCCAGACGCG+CGG - chr4_4:56656887-56656906 Msa0689560:CDS 45.0%
CAGGTTTGTACCTACCCAAA+CGG - chr4_4:56658096-56658115 Msa0689560:intron 45.0%
!! CTCGGGAAAAAGTTTGCTAC+AGG - chr4_4:56658375-56658394 Msa0689560:intron 45.0%
CCAATAAACCTTGACAACGG+AGG + chr4_4:56658403-56658422 None:intergenic 45.0%
CCTCCGTTGTCAAGGTTTAT+TGG - chr4_4:56658400-56658419 Msa0689560:intron 45.0%
TGTCTTTGACACCAGCCTAA+GGG - chr4_4:56658715-56658734 Msa0689560:intron 45.0%
TAAACAGCGGTCATTCTCCT+AGG + chr4_4:56658919-56658938 None:intergenic 45.0%
!! CTCTTTCTGGAACCTGAAGA+AGG + chr4_4:56659209-56659228 None:intergenic 45.0%
!!! TTGATATTTATTTTTTTATT+TGG - chr4_4:56657609-56657628 Msa0689560:intron 5.0%
!!! TGATATTTATTTTTTTATTT+GGG - chr4_4:56657610-56657629 Msa0689560:intron 5.0%
!! AAAACTAAATATTTAAATAT+GGG + chr4_4:56658134-56658153 None:intergenic 5.0%
!! AAAAACTAAATATTTAAATA+TGG + chr4_4:56658135-56658154 None:intergenic 5.0%
CCGCCGAATTCGCAATATTC+AGG + chr4_4:56655980-56655999 None:intergenic 50.0%
!! GGGTACGTTTTGGATCAACC+AGG + chr4_4:56656026-56656045 None:intergenic 50.0%
ACCCGAGATTGAATCCTGAC+TGG - chr4_4:56656578-56656597 Msa0689560:intron 50.0%
CTCAAACCATCGTTCCAGTC+AGG + chr4_4:56656595-56656614 None:intergenic 50.0%
CATACCGACCAACCAAACTC+CGG - chr4_4:56656648-56656667 Msa0689560:intron 50.0%
CAATCCGGAGTTTGGTTGGT+CGG + chr4_4:56656655-56656674 None:intergenic 50.0%
CTAGCAATCCGGAGTTTGGT+TGG + chr4_4:56656659-56656678 None:intergenic 50.0%
CAACCAAACTCCGGATTGCT+AGG - chr4_4:56656657-56656676 Msa0689560:intron 50.0%
AGACCTAGCAATCCGGAGTT+TGG + chr4_4:56656663-56656682 None:intergenic 50.0%
GGGAAAGAGACCTAGCAATC+CGG + chr4_4:56656670-56656689 None:intergenic 50.0%
! CTCTTTCCCTTGGTAACCTG+AGG - chr4_4:56656681-56656700 Msa0689560:intron 50.0%
GTAACGCGTTGCTTGCCTAT+TGG - chr4_4:56657140-56657159 Msa0689560:intron 50.0%
TATCACCACCGTGAAAGGCT+TGG - chr4_4:56657406-56657425 Msa0689560:intron 50.0%
AAGTTCCAAGCCTTTCACGG+TGG + chr4_4:56657414-56657433 None:intergenic 50.0%
!! TTTGGGTTGAGGGAGGATCA+AGG - chr4_4:56657627-56657646 Msa0689560:intron 50.0%
TGATCGACAGAAGAATGGGG+CGG - chr4_4:56658019-56658038 Msa0689560:intron 50.0%
! ATTTATTGGGCTGGGGGTAC+AGG - chr4_4:56658077-56658096 Msa0689560:CDS 50.0%
! GGAACATGAGGATGCCGTTT+GGG + chr4_4:56658113-56658132 None:intergenic 50.0%
!! GTAACGGACAGGGGTACTTA+TGG + chr4_4:56658203-56658222 None:intergenic 50.0%
!! AGCCACATACGTAACGGACA+GGG + chr4_4:56658213-56658232 None:intergenic 50.0%
!! AAGCCACATACGTAACGGAC+AGG + chr4_4:56658214-56658233 None:intergenic 50.0%
CTGTCTTTGACACCAGCCTA+AGG - chr4_4:56658714-56658733 Msa0689560:intron 50.0%
AGAAGCTAGCAGTCTTCAGC+AGG - chr4_4:56659064-56659083 Msa0689560:intron 50.0%
TAGCAGTCTTCAGCAGGTTG+AGG - chr4_4:56659070-56659089 Msa0689560:intron 50.0%
TTTGGCAGGGAAGCCAGAAG+AGG - chr4_4:56657190-56657209 Msa0689560:intron 55.0%
GGAAGACGCTTGACCTCTTC+TGG + chr4_4:56657206-56657225 None:intergenic 55.0%
GAAGAGGTCAAGCGTCTTCC+AGG - chr4_4:56657206-56657225 Msa0689560:intron 55.0%
AGGTCAAGCGTCTTCCAGGT+GGG - chr4_4:56657210-56657229 Msa0689560:intron 55.0%
! CATGAGGATGCCGTTTGGGT+AGG + chr4_4:56658109-56658128 None:intergenic 55.0%
GGGAACATGAGGATGCCGTT+TGG + chr4_4:56658114-56658133 None:intergenic 55.0%
ACCCCTGTCCGTTACGTATG+TGG - chr4_4:56658208-56658227 Msa0689560:intron 55.0%
!! GCCACATACGTAACGGACAG+GGG + chr4_4:56658212-56658231 None:intergenic 55.0%
TACAGGAGCCTCCGTTGTCA+AGG - chr4_4:56658392-56658411 Msa0689560:intron 55.0%
! GCTGCTTCTAGTGCTGCTGC+TGG - chr4_4:56656228-56656247 Msa0689560:intron 60.0%
!! GCTGCTGGTGCTGCTTCATC+AGG - chr4_4:56656243-56656262 Msa0689560:intron 60.0%
! CTTTTGGACTTCCGCGCGTC+TGG + chr4_4:56656901-56656920 None:intergenic 60.0%
GAGGTCAAGCGTCTTCCAGG+TGG - chr4_4:56657209-56657228 Msa0689560:intron 60.0%
CAAGCGTCTTCCAGGTGGGA+AGG - chr4_4:56657214-56657233 Msa0689560:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 56655890 56659569 56655890 ID=Msa0689560;Name=Msa0689560
chr4_4 mRNA 56655890 56659569 56655890 ID=Msa0689560-mRNA-1;Parent=Msa0689560;Name=Msa0689560-mRNA-1;_AED=0.11;_eAED=0.11;_QI=30|1|1|1|1|1|7|297|196
chr4_4 exon 56655890 56656243 56655890 ID=Msa0689560-mRNA-1:exon:15036;Parent=Msa0689560-mRNA-1
chr4_4 exon 56656878 56656961 56656878 ID=Msa0689560-mRNA-1:exon:15035;Parent=Msa0689560-mRNA-1
chr4_4 exon 56657046 56657113 56657046 ID=Msa0689560-mRNA-1:exon:15034;Parent=Msa0689560-mRNA-1
chr4_4 exon 56658022 56658103 56658022 ID=Msa0689560-mRNA-1:exon:15033;Parent=Msa0689560-mRNA-1
chr4_4 exon 56658212 56658261 56658212 ID=Msa0689560-mRNA-1:exon:15032;Parent=Msa0689560-mRNA-1
chr4_4 exon 56659195 56659293 56659195 ID=Msa0689560-mRNA-1:exon:15031;Parent=Msa0689560-mRNA-1
chr4_4 exon 56659389 56659569 56659389 ID=Msa0689560-mRNA-1:exon:15030;Parent=Msa0689560-mRNA-1
chr4_4 five_prime_UTR 56659540 56659569 56659540 ID=Msa0689560-mRNA-1:five_prime_utr;Parent=Msa0689560-mRNA-1
chr4_4 CDS 56659389 56659539 56659389 ID=Msa0689560-mRNA-1:cds;Parent=Msa0689560-mRNA-1
chr4_4 CDS 56659195 56659293 56659195 ID=Msa0689560-mRNA-1:cds;Parent=Msa0689560-mRNA-1
chr4_4 CDS 56658212 56658261 56658212 ID=Msa0689560-mRNA-1:cds;Parent=Msa0689560-mRNA-1
chr4_4 CDS 56658022 56658103 56658022 ID=Msa0689560-mRNA-1:cds;Parent=Msa0689560-mRNA-1
chr4_4 CDS 56657046 56657113 56657046 ID=Msa0689560-mRNA-1:cds;Parent=Msa0689560-mRNA-1
chr4_4 CDS 56656878 56656961 56656878 ID=Msa0689560-mRNA-1:cds;Parent=Msa0689560-mRNA-1
chr4_4 CDS 56656187 56656243 56656187 ID=Msa0689560-mRNA-1:cds;Parent=Msa0689560-mRNA-1
chr4_4 three_prime_UTR 56655890 56656186 56655890 ID=Msa0689560-mRNA-1:three_prime_utr;Parent=Msa0689560-mRNA-1
Gene Sequence

>Msa0689560

ATGGCAGAGAAACCCCAACCTGTTCGTGTATTATACTGCCAAGTATGCAGTTTACCTCCTGAATATTGCGAATTCGGCGGATCCGATTTTGAGAAATGTAAACCCTGGTTGATCCAAAACGTACCCGATTTATACCCTAATCTTCTTAACGAGGTGAATGAGAAGGAAGTTGGTAAAGTTGCTGATAAGTTACAAGGAACTGGTATTTCTTCTGCTGCTTCTAGTGCTGCTGCTGGTGCTGCTTCATCAGGGAAGCCAGAAGAGGTCAAGCGTCTTCCAGGTGGGAAGGTAAAGAAAAAGGACAAGCAAGAGGTTATTATTGAGAAGGTCGTACGTAACAAACGAAAATCTATCACCACCGTGAAAGGCTTGGAACTTTTCGGCGTCAAGCTCAGTGATGCTTCAAAGAAACTCGGGAAAAAGTTTGCTACAGGAGCCTCCGTTGTCAAGGGCCCAACTGAGAAAGAGCAAATTGATGTACAAGGGGATATATCTTATGACGTCGTGGAATTCATTACAGATACATGGCCTGACGTTCCAGAAAGAGCAATTTTCTTTATAGAAGATGGGAAAAAGGTTCCAGCTGCTTGA

Protein sequence

>Msa0689560

MAEKPQPVRVLYCQVCSLPPEYCEFGGSDFEKCKPWLIQNVPDLYPNLLNEVNEKEVGKVADKLQGTGISSAASSAAAGAASSGKPEEVKRLPGGKVKKKDKQEVIIEKVVRNKRKSITTVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDVVEFITDTWPDVPERAIFFIEDGKKVPAA*