AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0321960


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0321960 MtrunA17_Chr7g0222821 97.449 196 5 0 1 196 1 196 9.61e-139 385
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0321960 AT5G11900.1 77.387 199 41 2 1 196 1 198 3.28e-107 306

Find 59 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAAAGAAAATTGCTCTTTC+TGG 0.074045 2_4:+24059593 None:intergenic
TTAGCCATTAAACATATATT+AGG 0.166614 2_4:-24059425 Msa0321960:three_prime_UTR
ATGCCCTAATATATGTTTAA+TGG 0.250523 2_4:+24059421 None:intergenic
CTTTATAGAAGATGGGAAAA+AGG 0.276019 2_4:-24059576 Msa0321960:CDS
CCTCCTGAATATTGCGAATT+CGG 0.299996 2_4:-24062838 Msa0321960:CDS
GGAAGACGCTTGACCTCTTC+TGG 0.307162 2_4:+24061609 None:intergenic
GGTATAAATCGGGTACGTTT+TGG 0.311925 2_4:+24062779 None:intergenic
TAGAGGCAAAAGAATGAAAA+AGG 0.327300 2_4:-24059348 Msa0321960:three_prime_UTR
GCTGCTGGTGCTGCTTCATC+AGG 0.328517 2_4:-24062569 Msa0321960:intron
CCGCCGAATTCGCAATATTC+AGG 0.334612 2_4:+24062835 None:intergenic
GAAGAGGTCAAGCGTCTTCC+AGG 0.339781 2_4:-24061606 Msa0321960:CDS
TAGCCATTAAACATATATTA+GGG 0.341112 2_4:-24059424 Msa0321960:three_prime_UTR
ATGATACCGTTAAGAAGATT+AGG 0.342031 2_4:+24062757 None:intergenic
TTTCTTCACAGATAACTCTT+AGG 0.344331 2_4:+24059262 None:intergenic
AGGTGGGAAGGTAAAGAAAA+AGG 0.345795 2_4:-24061586 Msa0321960:intron
CAATTTGCTCTTTCTCAGTT+GGG 0.350955 2_4:+24060312 None:intergenic
GGGTTTACATTTCTCAAAAT+CGG 0.356886 2_4:+24062810 None:intergenic
AAGAAGATTAGGGTATAAAT+CGG 0.388595 2_4:+24062768 None:intergenic
TTATACCCTAATCTTCTTAA+CGG 0.393928 2_4:-24062763 Msa0321960:intron
GTATAATACACGAACAGGTT+GGG 0.398021 2_4:+24062879 None:intergenic
TCAATTTGCTCTTTCTCAGT+TGG 0.404644 2_4:+24060311 None:intergenic
CAGGAGGTAAACTGCATACT+TGG 0.429019 2_4:+24062854 None:intergenic
GCTGCTTCTAGTGCTGCTGC+TGG 0.448970 2_4:-24062584 Msa0321960:CDS
TGGCAGTATAATACACGAAC+AGG 0.454220 2_4:+24062874 None:intergenic
GAGGTGAATGAGAAGGAAGT+TGG 0.464532 2_4:-24062647 Msa0321960:CDS
GCTGATAAGTTACAAGGAAC+TGG 0.464731 2_4:-24062617 Msa0321960:CDS
TGATACCGTTAAGAAGATTA+GGG 0.480612 2_4:+24062758 None:intergenic
AATAGTCAAAATCAAGCAGC+TGG 0.484188 2_4:+24059551 None:intergenic
AAAGGAATGGCTGATAAACT+TGG 0.487807 2_4:-24059471 Msa0321960:three_prime_UTR
GAAAAGTTCCAAGCCTTTCA+CGG 0.501659 2_4:+24061398 None:intergenic
AAATCTATCACCACCGTGAA+AGG 0.502555 2_4:-24061411 Msa0321960:CDS
TTGTGTAGAGGTGAATGAGA+AGG 0.511630 2_4:-24062654 Msa0321960:intron
AGTATAATACACGAACAGGT+TGG 0.512737 2_4:+24062878 None:intergenic
TATAATACACGAACAGGTTG+GGG 0.517566 2_4:+24062880 None:intergenic
AATGAACTGTGTGCGTATAG+AGG 0.526626 2_4:-24059365 Msa0321960:three_prime_UTR
TATCACCACCGTGAAAGGCT+TGG 0.527509 2_4:-24061406 Msa0321960:CDS
TACAGGAGCCTCCGTTGTCA+AGG 0.546128 2_4:-24060420 Msa0321960:intron
GCAAGAGGTTATTATTGAGA+AGG 0.547028 2_4:-24061451 Msa0321960:CDS
AGAAGATTAGGGTATAAATC+GGG 0.556799 2_4:+24062769 None:intergenic
AGTGATGCTTCAAAGAAACT+CGG 0.567510 2_4:-24060455 Msa0321960:CDS
AAAGAGCAAATTGATGTACA+AGG 0.568292 2_4:-24060302 Msa0321960:CDS
GTGATGCTTCAAAGAAACTC+GGG 0.575928 2_4:-24060454 Msa0321960:CDS
CAAGCGTCTTCCAGGTGGGA+AGG 0.593558 2_4:-24061598 Msa0321960:CDS
ATTAAACATATATTAGGGCA+TGG 0.599403 2_4:-24059419 Msa0321960:three_prime_UTR
TGGAATTCATTACAGATACA+TGG 0.609023 2_4:-24060259 Msa0321960:CDS
AAGAGCAAATTGATGTACAA+GGG 0.610474 2_4:-24060301 Msa0321960:CDS
AAAGTTGCTGATAAGTTACA+AGG 0.616934 2_4:-24062623 Msa0321960:CDS
AGAGCAAATTGATGTACAAG+GGG 0.617172 2_4:-24060300 Msa0321960:CDS
TTTGGCAGGGAAGCCAGAAG+AGG 0.636115 2_4:-24061622 Msa0321960:intron
ATTTAACTGAAAATACACAT+AGG 0.636288 2_4:+24059395 None:intergenic
GAGGTCAAGCGTCTTCCAGG+TGG 0.642206 2_4:-24061603 Msa0321960:CDS
AGGTCAAGCGTCTTCCAGGT+GGG 0.653523 2_4:-24061602 Msa0321960:CDS
GGATATATCTTATGACGTCG+TGG 0.658599 2_4:-24060279 Msa0321960:CDS
CCTGAATATTGCGAATTCGG+CGG 0.662956 2_4:-24062835 Msa0321960:CDS
CCAATAAACCTTGACAACGG+AGG 0.664564 2_4:+24060412 None:intergenic
ATATCAGTGCATAATAACAA+TGG 0.665339 2_4:-24062911 Msa0321960:exon
CCGAATTCGCAATATTCAGG+AGG 0.677567 2_4:+24062838 None:intergenic
AAGCCAATAAACCTTGACAA+CGG 0.722782 2_4:+24060409 None:intergenic
AAGTTCCAAGCCTTTCACGG+TGG 0.743968 2_4:+24061401 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGTTATTTGAATATAAATT+TGG - chr2_4:24059766-24059785 Msa0321960:intron 10.0%
!!! TGTTATTTGAATATAAATTT+GGG - chr2_4:24059767-24059786 Msa0321960:intron 10.0%
!! ATTGTATAAAAAAATAAAAC+AGG + chr2_4:24061424-24061443 None:intergenic 10.0%
!! AATAAATCACATTAACAAAA+AGG + chr2_4:24059485-24059504 None:intergenic 15.0%
!! AAAAAAAAAACTCAAAATCA+TGG + chr2_4:24059719-24059738 None:intergenic 15.0%
!! ATTAATCACATTCAAATTTA+TGG + chr2_4:24059906-24059925 None:intergenic 15.0%
!! AAATATCAATTGCTAAATAT+GGG + chr2_4:24060973-24060992 None:intergenic 15.0%
!! TAAATATCAATTGCTAAATA+TGG + chr2_4:24060974-24060993 None:intergenic 15.0%
!! AAAGAGATACAATAAAAAAA+TGG + chr2_4:24061089-24061108 None:intergenic 15.0%
!!! AATAAGAAATTAGATTTTTG+AGG - chr2_4:24061178-24061197 Msa0321960:intron 15.0%
!!! CACTTATACTATTTTTTTAT+TGG - chr2_4:24061844-24061863 Msa0321960:intron 15.0%
!!! GAAAAACATGTTATTTAAAT+AGG - chr2_4:24062062-24062081 Msa0321960:intron 15.0%
!!! TGTAATCATAATGTTTTTAA+TGG + chr2_4:24062162-24062181 None:intergenic 15.0%
!! ATCACAATTACAAAAAATAA+CGG - chr2_4:24062253-24062272 Msa0321960:intron 15.0%
!!! TTATAGATCTATATTTTTCT+AGG + chr2_4:24062364-24062383 None:intergenic 15.0%
!! GACTATTTATAAAAAAACTT+TGG - chr2_4:24062652-24062671 Msa0321960:intron 15.0%
!!! TATCAATATTTTAAGTTAGT+TGG - chr2_4:24062899-24062918 Msa0321960:exon 15.0%
!!! ATCAATATTTTAAGTTAGTT+GGG - chr2_4:24062900-24062919 Msa0321960:exon 15.0%
!!! TAATTATTGTTTTTGTGTAG+AGG - chr2_4:24059521-24059540 Msa0321960:three_prime_UTR 20.0%
!!! GTTTTTTTTTTTTTCAGCAT+TGG - chr2_4:24059728-24059747 Msa0321960:intron 20.0%
!! GAATGTGATTAATCAAATTA+AGG - chr2_4:24059913-24059932 Msa0321960:intron 20.0%
!! ATTTGAAAAGTTGAAAATCA+AGG + chr2_4:24060108-24060127 None:intergenic 20.0%
!! GGTTAATTAAGTTCAATTTA+TGG - chr2_4:24060179-24060198 Msa0321960:intron 20.0%
!! TTAAGTTCAATTTATGGTTA+AGG - chr2_4:24060185-24060204 Msa0321960:intron 20.0%
!! AATAATTTAAAAGCTACAAG+AGG + chr2_4:24060302-24060321 None:intergenic 20.0%
!!! ATTTCTGATTTCTTTTTTTG+AGG - chr2_4:24060449-24060468 Msa0321960:CDS 20.0%
!!! AATTCCCTATTTTGATATTT+TGG - chr2_4:24060547-24060566 Msa0321960:intron 20.0%
!!! TCTTTCTCTTACTTTTTTTT+TGG - chr2_4:24060827-24060846 Msa0321960:intron 20.0%
!!! TTATTTTTTTATTTGGGTTG+AGG - chr2_4:24060991-24061010 Msa0321960:intron 20.0%
!!! TATTTTTTTATTTGGGTTGA+GGG - chr2_4:24060992-24061011 Msa0321960:intron 20.0%
!! ATATTTACATAGCAAAAAAC+TGG - chr2_4:24061287-24061306 Msa0321960:intron 20.0%
!! TATTTACATAGCAAAAAACT+GGG - chr2_4:24061288-24061307 Msa0321960:intron 20.0%
!! ATACTTTCTTTATTACCTTA+TGG + chr2_4:24061344-24061363 None:intergenic 20.0%
!!! TACAATGTTTTCACATTTAT+TGG - chr2_4:24061438-24061457 Msa0321960:CDS 20.0%
!!! ACAATGTTTTCACATTTATT+GGG - chr2_4:24061439-24061458 Msa0321960:CDS 20.0%
!!! TCCTTGTTGAATAATATTTT+TGG - chr2_4:24061534-24061553 Msa0321960:intron 20.0%
!! TCCAAAAATATTATTCAACA+AGG + chr2_4:24061538-24061557 None:intergenic 20.0%
!!! ATAATATTTTTGGAATGTAC+CGG - chr2_4:24061544-24061563 Msa0321960:intron 20.0%
!!! GTTATTTTTTGTAATTGTGA+TGG + chr2_4:24062254-24062273 None:intergenic 20.0%
!! AATATAGATCTATAACTAAG+AGG - chr2_4:24062369-24062388 Msa0321960:intron 20.0%
!!! CAATTTTCTTTATAGAAGAT+GGG - chr2_4:24062604-24062623 Msa0321960:CDS 20.0%
!! TTTATAAAAAAACTTTGGAC+TGG - chr2_4:24062657-24062676 Msa0321960:intron 20.0%
!! TTAGCCATTAAACATATATT+AGG - chr2_4:24062762-24062781 Msa0321960:intron 20.0%
!! TAGCCATTAAACATATATTA+GGG - chr2_4:24062763-24062782 Msa0321960:intron 20.0%
!! ATTTAACTGAAAATACACAT+AGG + chr2_4:24062795-24062814 None:intergenic 20.0%
! ATATCAGTGCATAATAACAA+TGG - chr2_4:24059276-24059295 Msa0321960:three_prime_UTR 25.0%
! AAGAAGATTAGGGTATAAAT+CGG + chr2_4:24059422-24059441 None:intergenic 25.0%
! TTATACCCTAATCTTCTTAA+CGG - chr2_4:24059424-24059443 Msa0321960:three_prime_UTR 25.0%
!! AGTATTCCACAGTTTTTAAA+TGG - chr2_4:24059804-24059823 Msa0321960:intron 25.0%
! CTTTAACCATTTAAAAACTG+TGG + chr2_4:24059813-24059832 None:intergenic 25.0%
! ACTTGGATAATAGTTATATC+AGG - chr2_4:24059843-24059862 Msa0321960:intron 25.0%
! TATGACCAATAATTCAATCT+CGG + chr2_4:24059998-24060017 None:intergenic 25.0%
! GTTAATAGTGTTCAAATTTG+TGG - chr2_4:24060158-24060177 Msa0321960:intron 25.0%
! TTATTGTGTTAGAAATGCAT+TGG - chr2_4:24060317-24060336 Msa0321960:CDS 25.0%
! TATTGTGTTAGAAATGCATT+GGG - chr2_4:24060318-24060337 Msa0321960:intron 25.0%
!! AAACTTGACAACTTTTCAAA+TGG + chr2_4:24060401-24060420 None:intergenic 25.0%
! GGAATTGAATAATAACCAAT+AGG + chr2_4:24060533-24060552 None:intergenic 25.0%
!!! GTAAAGAAAAAGGTATGTTT+TGG - chr2_4:24060611-24060630 Msa0321960:intron 25.0%
! TATGTAGAATAGAATGAAAC+CGG - chr2_4:24060864-24060883 Msa0321960:intron 25.0%
!!! TTTTATTTCTTTCAATCCTC+CGG + chr2_4:24060886-24060905 None:intergenic 25.0%
! AAAAAATGGAATGAGATTAG+TGG + chr2_4:24061075-24061094 None:intergenic 25.0%
! TATTTAAATATGGGAACATG+AGG + chr2_4:24061500-24061519 None:intergenic 25.0%
!! CTAATTTGCATATTCATTTG+TGG - chr2_4:24061994-24062013 Msa0321960:intron 25.0%
! TATCAATTAGAAATAGACCA+TGG + chr2_4:24062417-24062436 None:intergenic 25.0%
! TTTCATTTATAAAGAACCTG+TGG + chr2_4:24062506-24062525 None:intergenic 25.0%
!! TAGAGAACTTTTATGTGATT+TGG - chr2_4:24062547-24062566 Msa0321960:intron 25.0%
! ATAAAGAAAATTGCTCTTTC+TGG + chr2_4:24062597-24062616 None:intergenic 25.0%
!! GCAATTTTCTTTATAGAAGA+TGG - chr2_4:24062603-24062622 Msa0321960:CDS 25.0%
! ATGCCCTAATATATGTTTAA+TGG + chr2_4:24062769-24062788 None:intergenic 25.0%
! ATTAAACATATATTAGGGCA+TGG - chr2_4:24062768-24062787 Msa0321960:CDS 25.0%
GGGTTTACATTTCTCAAAAT+CGG + chr2_4:24059380-24059399 None:intergenic 30.0%
!! ATTTTGAGAAATGTAAACCC+TGG - chr2_4:24059380-24059399 Msa0321960:three_prime_UTR 30.0%
AGAAGATTAGGGTATAAATC+GGG + chr2_4:24059421-24059440 None:intergenic 30.0%
TGATACCGTTAAGAAGATTA+GGG + chr2_4:24059432-24059451 None:intergenic 30.0%
ATGATACCGTTAAGAAGATT+AGG + chr2_4:24059433-24059452 None:intergenic 30.0%
AAAGTTGCTGATAAGTTACA+AGG - chr2_4:24059564-24059583 Msa0321960:CDS 30.0%
!! TGAATGTTGATGATGAAGAA+TGG - chr2_4:24059671-24059690 Msa0321960:intron 30.0%
ATGACCAATAATTCAATCTC+GGG + chr2_4:24059997-24060016 None:intergenic 30.0%
CAAGGTTAATTGCATTTCTT+TGG + chr2_4:24060090-24060109 None:intergenic 30.0%
! CAACTTTTCAAATCTACAAG+TGG - chr2_4:24060115-24060134 Msa0321960:intron 30.0%
GTCTATAGGTATATGAAGAT+TGG + chr2_4:24060217-24060236 None:intergenic 30.0%
CACTAATATTGTGTTTGTAG+TGG + chr2_4:24060367-24060386 None:intergenic 30.0%
CCTGCCAAAATATCAAAATA+GGG + chr2_4:24060554-24060573 None:intergenic 30.0%
!!! CCTATTTTGATATTTTGGCA+GGG - chr2_4:24060552-24060571 Msa0321960:intron 30.0%
TGATCACATCAATCAAATGA+TGG + chr2_4:24060690-24060709 None:intergenic 30.0%
!!! TCCAGTGTTTTGAAATGAAA+TGG - chr2_4:24060912-24060931 Msa0321960:intron 30.0%
TCCATTTCATTTCAAAACAC+TGG + chr2_4:24060916-24060935 None:intergenic 30.0%
GCAATGAAATAGATTATACG+AGG - chr2_4:24061033-24061052 Msa0321960:intron 30.0%
TTGCACAATTCTAGATATGT+TGG - chr2_4:24061116-24061135 Msa0321960:intron 30.0%
ATTCTAGATATGTTGGAGTA+CGG - chr2_4:24061123-24061142 Msa0321960:intron 30.0%
! TTTTCCAAAAAACTAGGCTA+TGG - chr2_4:24061148-24061167 Msa0321960:intron 30.0%
!!! ATTACCATAGCCTAGTTTTT+TGG + chr2_4:24061155-24061174 None:intergenic 30.0%
!! CCAATTCTAGTTTCTTATTC+AGG + chr2_4:24061221-24061240 None:intergenic 30.0%
CCTGAATAAGAAACTAGAAT+TGG - chr2_4:24061218-24061237 Msa0321960:intron 30.0%
! TGTCACTTGAAACTGAAATT+AGG - chr2_4:24061257-24061276 Msa0321960:intron 30.0%
GTCACTTGAAACTGAAATTA+GGG - chr2_4:24061258-24061277 Msa0321960:intron 30.0%
TCACTTGAAACTGAAATTAG+GGG - chr2_4:24061259-24061278 Msa0321960:intron 30.0%
CAAAAAACTGGGTAATTGTA+TGG - chr2_4:24061299-24061318 Msa0321960:intron 30.0%
AAGTTGGAAAAGAATCCATA+AGG - chr2_4:24061326-24061345 Msa0321960:intron 30.0%
AATTAAAGCCACATACGTAA+CGG + chr2_4:24061594-24061613 None:intergenic 30.0%
!!! TACGTATGTGGCTTTAATTT+TGG - chr2_4:24061595-24061614 Msa0321960:CDS 30.0%
TGCTGCATTATAAAAACCTA+CGG + chr2_4:24061632-24061651 None:intergenic 30.0%
TATCATTACATACACGTCAT+TGG - chr2_4:24061667-24061686 Msa0321960:intron 30.0%
ATGCATAGTTGCTTAATAGT+TGG - chr2_4:24061814-24061833 Msa0321960:intron 30.0%
!!! ACTATTTTTTTATTGGCGTC+AGG - chr2_4:24061851-24061870 Msa0321960:intron 30.0%
!!! CTATTTTTTTATTGGCGTCA+GGG - chr2_4:24061852-24061871 Msa0321960:intron 30.0%
AAAGAGCAAATTGATGTACA+AGG - chr2_4:24061885-24061904 Msa0321960:intron 30.0%
AAGAGCAAATTGATGTACAA+GGG - chr2_4:24061886-24061905 Msa0321960:intron 30.0%
TGGAATTCATTACAGATACA+TGG - chr2_4:24061928-24061947 Msa0321960:intron 30.0%
!!! ATACTGGTGGATTTTTACTT+GGG - chr2_4:24062022-24062041 Msa0321960:intron 30.0%
AAGTGTTTCATAAATCCCTT+AGG + chr2_4:24062108-24062127 None:intergenic 30.0%
ATGAAACACTTCATTAACCT+AGG - chr2_4:24062117-24062136 Msa0321960:intron 30.0%
ATAGATCTATAACTAAGAGG+TGG - chr2_4:24062372-24062391 Msa0321960:intron 30.0%
TGCATAATATAAAGAGAGCT+AGG + chr2_4:24062478-24062497 None:intergenic 30.0%
! CATAAAAGTTCTCTAGTCTT+GGG + chr2_4:24062542-24062561 None:intergenic 30.0%
ACATAAAAGTTCTCTAGTCT+TGG + chr2_4:24062543-24062562 None:intergenic 30.0%
CTTTATAGAAGATGGGAAAA+AGG - chr2_4:24062611-24062630 Msa0321960:CDS 30.0%
! ATAAAAAAACTTTGGACTGG+TGG - chr2_4:24062660-24062679 Msa0321960:intron 30.0%
!! AAAAGAATCAGCTATTTTGC+TGG - chr2_4:24062687-24062706 Msa0321960:intron 30.0%
! CTATTTTGCTGGATTTTGAA+AGG - chr2_4:24062698-24062717 Msa0321960:intron 30.0%
TAGAGGCAAAAGAATGAAAA+AGG - chr2_4:24062839-24062858 Msa0321960:CDS 30.0%
TATAATACACGAACAGGTTG+GGG + chr2_4:24059310-24059329 None:intergenic 35.0%
GTATAATACACGAACAGGTT+GGG + chr2_4:24059311-24059330 None:intergenic 35.0%
AGTATAATACACGAACAGGT+TGG + chr2_4:24059312-24059331 None:intergenic 35.0%
GTTAAAGCAGTTTGCATACT+TGG - chr2_4:24059826-24059845 Msa0321960:intron 35.0%
AGAACCCGAGATTGAATTAT+TGG - chr2_4:24059990-24060009 Msa0321960:intron 35.0%
ACACAGCATAAGTTGTCTAT+AGG + chr2_4:24060231-24060250 None:intergenic 35.0%
AACAGAGAGAAACAACATTC+AGG + chr2_4:24060481-24060500 None:intergenic 35.0%
!!! CCCTATTTTGATATTTTGGC+AGG - chr2_4:24060551-24060570 Msa0321960:intron 35.0%
CCCTGCCAAAATATCAAAAT+AGG + chr2_4:24060555-24060574 None:intergenic 35.0%
! AGATGCGATGTTTTCTTTTC+AGG - chr2_4:24060709-24060728 Msa0321960:intron 35.0%
GCAAGAGGTTATTATTGAGA+AGG - chr2_4:24060736-24060755 Msa0321960:intron 35.0%
!!! TTTTTTATTTGGGTTGAGGG+AGG - chr2_4:24060995-24061014 Msa0321960:intron 35.0%
TGAGATTAGTGGCTGATATT+CGG + chr2_4:24061064-24061083 None:intergenic 35.0%
TTCTAGATATGTTGGAGTAC+GGG - chr2_4:24061124-24061143 Msa0321960:intron 35.0%
TTGAAACTGAAATTAGGGGA+GGG - chr2_4:24061263-24061282 Msa0321960:intron 35.0%
AAACTGGGTAATTGTATGGT+AGG - chr2_4:24061303-24061322 Msa0321960:intron 35.0%
GTAATTGTATGGTAGGAAGT+TGG - chr2_4:24061310-24061329 Msa0321960:intron 35.0%
AACATGATCGACAGAAGAAT+GGG - chr2_4:24061390-24061409 Msa0321960:intron 35.0%
! TGTTTTCACATTTATTGGGC+TGG - chr2_4:24061443-24061462 Msa0321960:CDS 35.0%
! GTTTTCACATTTATTGGGCT+GGG - chr2_4:24061444-24061463 Msa0321960:CDS 35.0%
! TTTTCACATTTATTGGGCTG+GGG - chr2_4:24061445-24061464 Msa0321960:CDS 35.0%
! CGACACTTTTATTGCATTTC+AGG - chr2_4:24061699-24061718 Msa0321960:intron 35.0%
AGTGATGCTTCAAAGAAACT+CGG - chr2_4:24061732-24061751 Msa0321960:intron 35.0%
AAGCCAATAAACCTTGACAA+CGG + chr2_4:24061781-24061800 None:intergenic 35.0%
!! GTTTATTGGCTTCTACGTAA+TGG - chr2_4:24061789-24061808 Msa0321960:intron 35.0%
! CAATTTGCTCTTTCTCAGTT+GGG + chr2_4:24061878-24061897 None:intergenic 35.0%
! TCAATTTGCTCTTTCTCAGT+TGG + chr2_4:24061879-24061898 None:intergenic 35.0%
AGAGCAAATTGATGTACAAG+GGG - chr2_4:24061887-24061906 Msa0321960:intron 35.0%
AAAAGAATAACACTCACGTC+AGG + chr2_4:24061954-24061973 None:intergenic 35.0%
TTCATTTGTGGAAGAGATAC+TGG - chr2_4:24062006-24062025 Msa0321960:intron 35.0%
!!! GATACTGGTGGATTTTTACT+TGG - chr2_4:24062021-24062040 Msa0321960:intron 35.0%
AACATTGGATGTGTTTCTTG+TGG + chr2_4:24062211-24062230 None:intergenic 35.0%
!! TACGCTAGTGTTTTAAACAG+CGG + chr2_4:24062307-24062326 None:intergenic 35.0%
TATATTATGCATCATGCCAC+AGG - chr2_4:24062487-24062506 Msa0321960:intron 35.0%
GAAATCTATCTTCCTTCTTC+AGG - chr2_4:24062569-24062588 Msa0321960:intron 35.0%
AATAGTCAAAATCAAGCAGC+TGG + chr2_4:24062639-24062658 None:intergenic 35.0%
!! TTGCTGGATTTTGAAAGGAA+TGG - chr2_4:24062703-24062722 Msa0321960:intron 35.0%
AAAGGAATGGCTGATAAACT+TGG - chr2_4:24062716-24062735 Msa0321960:intron 35.0%
TGGCAGTATAATACACGAAC+AGG + chr2_4:24059316-24059335 None:intergenic 40.0%
CCTCCTGAATATTGCGAATT+CGG - chr2_4:24059349-24059368 Msa0321960:three_prime_UTR 40.0%
! GGTATAAATCGGGTACGTTT+TGG + chr2_4:24059411-24059430 None:intergenic 40.0%
TTGTGTAGAGGTGAATGAGA+AGG - chr2_4:24059533-24059552 Msa0321960:three_prime_UTR 40.0%
GCTGATAAGTTACAAGGAAC+TGG - chr2_4:24059570-24059589 Msa0321960:CDS 40.0%
TTCCAGTCAGGATTCAATCT+CGG + chr2_4:24059958-24059977 None:intergenic 40.0%
TTAAACCCTCAGGTTACCAA+GGG + chr2_4:24060065-24060084 None:intergenic 40.0%
!! TTCTTTGGTCTTAAACCCTC+AGG + chr2_4:24060075-24060094 None:intergenic 40.0%
CTACAAGTGGTTGAAATGCA+TGG - chr2_4:24060128-24060147 Msa0321960:intron 40.0%
! AAGCTACAAGAGGTAGCTTT+TGG + chr2_4:24060292-24060311 None:intergenic 40.0%
GTTAGAAATGCATTGGGAAG+TGG - chr2_4:24060324-24060343 Msa0321960:intron 40.0%
GTTTGTAGTGGCGTTTAGTT+AGG + chr2_4:24060355-24060374 None:intergenic 40.0%
! TTTTTCTTTACCTTCCCACC+TGG + chr2_4:24060602-24060621 None:intergenic 40.0%
AGGTGGGAAGGTAAAGAAAA+AGG - chr2_4:24060601-24060620 Msa0321960:intron 40.0%
!! TTCTTTTCAGGACAAGCAAG+AGG - chr2_4:24060721-24060740 Msa0321960:intron 40.0%
AAATCTATCACCACCGTGAA+AGG - chr2_4:24060776-24060795 Msa0321960:intron 40.0%
GAAAAGTTCCAAGCCTTTCA+CGG + chr2_4:24060792-24060811 None:intergenic 40.0%
! GTGAAAGGCTTGGAACTTTT+CGG - chr2_4:24060791-24060810 Msa0321960:intron 40.0%
GTAGAATAGAATGAAACCGG+AGG - chr2_4:24060867-24060886 Msa0321960:intron 40.0%
GAGATTAGTGGCTGATATTC+GGG + chr2_4:24061063-24061082 None:intergenic 40.0%
TCTAGATATGTTGGAGTACG+GGG - chr2_4:24061125-24061144 Msa0321960:intron 40.0%
! ACGGGGTTTTCCAAAAAACT+AGG - chr2_4:24061142-24061161 Msa0321960:intron 40.0%
CTTGAAACTGAAATTAGGGG+AGG - chr2_4:24061262-24061281 Msa0321960:intron 40.0%
TGAAACTGAAATTAGGGGAG+GGG - chr2_4:24061264-24061283 Msa0321960:intron 40.0%
CAACATGATCGACAGAAGAA+TGG - chr2_4:24061389-24061408 Msa0321960:intron 40.0%
ACATGATCGACAGAAGAATG+GGG - chr2_4:24061391-24061410 Msa0321960:intron 40.0%
! TTTCACATTTATTGGGCTGG+GGG - chr2_4:24061446-24061465 Msa0321960:CDS 40.0%
GGTACTTATGGATACGTATC+CGG + chr2_4:24061566-24061585 None:intergenic 40.0%
! TTTGGAGTACATTTGTCCGT+AGG - chr2_4:24061613-24061632 Msa0321960:CDS 40.0%
GTGATGCTTCAAAGAAACTC+GGG - chr2_4:24061733-24061752 Msa0321960:intron 40.0%
GGATATATCTTATGACGTCG+TGG - chr2_4:24061908-24061927 Msa0321960:intron 40.0%
ATTTGTGGAAGAGATACTGG+TGG - chr2_4:24062009-24062028 Msa0321960:intron 40.0%
GTTTCATAAATCCCTTAGGC+TGG + chr2_4:24062104-24062123 None:intergenic 40.0%
CCTTTCAGCACTTATATCCT+AGG + chr2_4:24062137-24062156 None:intergenic 40.0%
!! CCTAGGATATAAGTGCTGAA+AGG - chr2_4:24062134-24062153 Msa0321960:intron 40.0%
TTGGATGTGTTTCTTGTGGT+GGG + chr2_4:24062207-24062226 None:intergenic 40.0%
ATTGGATGTGTTTCTTGTGG+TGG + chr2_4:24062208-24062227 None:intergenic 40.0%
! ACTGGTCTACGCATAAACAT+TGG + chr2_4:24062226-24062245 None:intergenic 40.0%
!! GTAATTGTGATGGACAACAC+TGG + chr2_4:24062244-24062263 None:intergenic 40.0%
! GGTTTGTTCAAAATCTGCCT+AGG - chr2_4:24062274-24062293 Msa0321960:intron 40.0%
TCTATAACTAAGAGGTGGTG+AGG - chr2_4:24062377-24062396 Msa0321960:intron 40.0%
AGGTTGTGTTCTATCTTCCA+TGG - chr2_4:24062397-24062416 Msa0321960:intron 40.0%
AATGAACTGTGTGCGTATAG+AGG - chr2_4:24062822-24062841 Msa0321960:CDS 40.0%
CAGGAGGTAAACTGCATACT+TGG + chr2_4:24059336-24059355 None:intergenic 45.0%
CCGAATTCGCAATATTCAGG+AGG + chr2_4:24059352-24059371 None:intergenic 45.0%
CCTGAATATTGCGAATTCGG+CGG - chr2_4:24059352-24059371 Msa0321960:three_prime_UTR 45.0%
!! GGTACGTTTTGGATCAACCA+GGG + chr2_4:24059400-24059419 None:intergenic 45.0%
GAGGTGAATGAGAAGGAAGT+TGG - chr2_4:24059540-24059559 Msa0321960:three_prime_UTR 45.0%
TCCAGTCAGGATTCAATCTC+GGG + chr2_4:24059957-24059976 None:intergenic 45.0%
TTGAATCCTGACTGGAACGA+TGG - chr2_4:24059961-24059980 Msa0321960:intron 45.0%
ATTGCTAGGTCTCTTTCCCT+TGG - chr2_4:24060046-24060065 Msa0321960:intron 45.0%
! TCTTTCCCTTGGTAACCTGA+GGG - chr2_4:24060057-24060076 Msa0321960:intron 45.0%
CTTAAACCCTCAGGTTACCA+AGG + chr2_4:24060066-24060085 None:intergenic 45.0%
! TTTTCTTTTGTCCAGACGCG+CGG - chr2_4:24060262-24060281 Msa0321960:CDS 45.0%
CAGGTTTGTACCTACCCAAA+CGG - chr2_4:24061471-24061490 Msa0321960:intron 45.0%
!! CTCGGGAAAAAGTTTGCTAC+AGG - chr2_4:24061750-24061769 Msa0321960:intron 45.0%
CCAATAAACCTTGACAACGG+AGG + chr2_4:24061778-24061797 None:intergenic 45.0%
CCTCCGTTGTCAAGGTTTAT+TGG - chr2_4:24061775-24061794 Msa0321960:intron 45.0%
TGTCTTTGACACCAGCCTAA+GGG - chr2_4:24062090-24062109 Msa0321960:intron 45.0%
TAAACAGCGGTCATTCTCCT+AGG + chr2_4:24062294-24062313 None:intergenic 45.0%
!! CTCTTTCTGGAACCTGAAGA+AGG + chr2_4:24062584-24062603 None:intergenic 45.0%
!!! TTGATATTTATTTTTTTATT+TGG - chr2_4:24060984-24061003 Msa0321960:intron 5.0%
!!! TGATATTTATTTTTTTATTT+GGG - chr2_4:24060985-24061004 Msa0321960:intron 5.0%
!! AAAACTAAATATTTAAATAT+GGG + chr2_4:24061509-24061528 None:intergenic 5.0%
!! AAAAACTAAATATTTAAATA+TGG + chr2_4:24061510-24061529 None:intergenic 5.0%
CCGCCGAATTCGCAATATTC+AGG + chr2_4:24059355-24059374 None:intergenic 50.0%
!! GGGTACGTTTTGGATCAACC+AGG + chr2_4:24059401-24059420 None:intergenic 50.0%
ACCCGAGATTGAATCCTGAC+TGG - chr2_4:24059953-24059972 Msa0321960:intron 50.0%
CTCAAACCATCGTTCCAGTC+AGG + chr2_4:24059970-24059989 None:intergenic 50.0%
CATACCGACCAACCAAACTC+CGG - chr2_4:24060023-24060042 Msa0321960:intron 50.0%
CAATCCGGAGTTTGGTTGGT+CGG + chr2_4:24060030-24060049 None:intergenic 50.0%
CTAGCAATCCGGAGTTTGGT+TGG + chr2_4:24060034-24060053 None:intergenic 50.0%
CAACCAAACTCCGGATTGCT+AGG - chr2_4:24060032-24060051 Msa0321960:intron 50.0%
AGACCTAGCAATCCGGAGTT+TGG + chr2_4:24060038-24060057 None:intergenic 50.0%
GGGAAAGAGACCTAGCAATC+CGG + chr2_4:24060045-24060064 None:intergenic 50.0%
! CTCTTTCCCTTGGTAACCTG+AGG - chr2_4:24060056-24060075 Msa0321960:intron 50.0%
GTAACGCGTTGCTTGCCTAT+TGG - chr2_4:24060515-24060534 Msa0321960:intron 50.0%
TATCACCACCGTGAAAGGCT+TGG - chr2_4:24060781-24060800 Msa0321960:intron 50.0%
AAGTTCCAAGCCTTTCACGG+TGG + chr2_4:24060789-24060808 None:intergenic 50.0%
!! TTTGGGTTGAGGGAGGATCA+AGG - chr2_4:24061002-24061021 Msa0321960:intron 50.0%
TGATCGACAGAAGAATGGGG+CGG - chr2_4:24061394-24061413 Msa0321960:intron 50.0%
! ATTTATTGGGCTGGGGGTAC+AGG - chr2_4:24061452-24061471 Msa0321960:CDS 50.0%
! GGAACATGAGGATGCCGTTT+GGG + chr2_4:24061488-24061507 None:intergenic 50.0%
!! GTAACGGACAGGGGTACTTA+TGG + chr2_4:24061578-24061597 None:intergenic 50.0%
!! AGCCACATACGTAACGGACA+GGG + chr2_4:24061588-24061607 None:intergenic 50.0%
!! AAGCCACATACGTAACGGAC+AGG + chr2_4:24061589-24061608 None:intergenic 50.0%
CTGTCTTTGACACCAGCCTA+AGG - chr2_4:24062089-24062108 Msa0321960:intron 50.0%
AGAAGCTAGCAGTCTTCAGC+AGG - chr2_4:24062439-24062458 Msa0321960:intron 50.0%
TAGCAGTCTTCAGCAGGTTG+AGG - chr2_4:24062445-24062464 Msa0321960:intron 50.0%
TTTGGCAGGGAAGCCAGAAG+AGG - chr2_4:24060565-24060584 Msa0321960:intron 55.0%
GGAAGACGCTTGACCTCTTC+TGG + chr2_4:24060581-24060600 None:intergenic 55.0%
GAAGAGGTCAAGCGTCTTCC+AGG - chr2_4:24060581-24060600 Msa0321960:intron 55.0%
AGGTCAAGCGTCTTCCAGGT+GGG - chr2_4:24060585-24060604 Msa0321960:intron 55.0%
! CATGAGGATGCCGTTTGGGT+AGG + chr2_4:24061484-24061503 None:intergenic 55.0%
GGGAACATGAGGATGCCGTT+TGG + chr2_4:24061489-24061508 None:intergenic 55.0%
ACCCCTGTCCGTTACGTATG+TGG - chr2_4:24061583-24061602 Msa0321960:intron 55.0%
!! GCCACATACGTAACGGACAG+GGG + chr2_4:24061587-24061606 None:intergenic 55.0%
TACAGGAGCCTCCGTTGTCA+AGG - chr2_4:24061767-24061786 Msa0321960:intron 55.0%
! GCTGCTTCTAGTGCTGCTGC+TGG - chr2_4:24059603-24059622 Msa0321960:intron 60.0%
!! GCTGCTGGTGCTGCTTCATC+AGG - chr2_4:24059618-24059637 Msa0321960:intron 60.0%
! CTTTTGGACTTCCGCGCGTC+TGG + chr2_4:24060276-24060295 None:intergenic 60.0%
GAGGTCAAGCGTCTTCCAGG+TGG - chr2_4:24060584-24060603 Msa0321960:intron 60.0%
CAAGCGTCTTCCAGGTGGGA+AGG - chr2_4:24060589-24060608 Msa0321960:intron 60.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 24059265 24062944 24059265 ID=Msa0321960;Name=Msa0321960
chr2_4 mRNA 24059265 24062944 24059265 ID=Msa0321960-mRNA-1;Parent=Msa0321960;Name=Msa0321960-mRNA-1;_AED=0.11;_eAED=0.11;_QI=30|1|1|1|1|1|7|297|196
chr2_4 exon 24059265 24059618 24059265 ID=Msa0321960-mRNA-1:exon:8659;Parent=Msa0321960-mRNA-1
chr2_4 exon 24060253 24060336 24060253 ID=Msa0321960-mRNA-1:exon:8658;Parent=Msa0321960-mRNA-1
chr2_4 exon 24060421 24060488 24060421 ID=Msa0321960-mRNA-1:exon:8657;Parent=Msa0321960-mRNA-1
chr2_4 exon 24061397 24061478 24061397 ID=Msa0321960-mRNA-1:exon:8656;Parent=Msa0321960-mRNA-1
chr2_4 exon 24061587 24061636 24061587 ID=Msa0321960-mRNA-1:exon:8655;Parent=Msa0321960-mRNA-1
chr2_4 exon 24062570 24062668 24062570 ID=Msa0321960-mRNA-1:exon:8654;Parent=Msa0321960-mRNA-1
chr2_4 exon 24062764 24062944 24062764 ID=Msa0321960-mRNA-1:exon:8653;Parent=Msa0321960-mRNA-1
chr2_4 five_prime_UTR 24062915 24062944 24062915 ID=Msa0321960-mRNA-1:five_prime_utr;Parent=Msa0321960-mRNA-1
chr2_4 CDS 24062764 24062914 24062764 ID=Msa0321960-mRNA-1:cds;Parent=Msa0321960-mRNA-1
chr2_4 CDS 24062570 24062668 24062570 ID=Msa0321960-mRNA-1:cds;Parent=Msa0321960-mRNA-1
chr2_4 CDS 24061587 24061636 24061587 ID=Msa0321960-mRNA-1:cds;Parent=Msa0321960-mRNA-1
chr2_4 CDS 24061397 24061478 24061397 ID=Msa0321960-mRNA-1:cds;Parent=Msa0321960-mRNA-1
chr2_4 CDS 24060421 24060488 24060421 ID=Msa0321960-mRNA-1:cds;Parent=Msa0321960-mRNA-1
chr2_4 CDS 24060253 24060336 24060253 ID=Msa0321960-mRNA-1:cds;Parent=Msa0321960-mRNA-1
chr2_4 CDS 24059562 24059618 24059562 ID=Msa0321960-mRNA-1:cds;Parent=Msa0321960-mRNA-1
chr2_4 three_prime_UTR 24059265 24059561 24059265 ID=Msa0321960-mRNA-1:three_prime_utr;Parent=Msa0321960-mRNA-1
Gene Sequence

>Msa0321960

ATGGCAGAGAAACCCCAACCTGTTCGTGTATTATACTGCCAAGTATGCAGTTTACCTCCTGAATATTGCGAATTCGGCGGATCCGATTTTGAGAAATGTAAACCCTGGTTGATCCAAAACGTACCCGATTTATACCCTAATCTTCTTAACGAGGTGAATGAGAAGGAAGTTGGTAAAGTTGCTGATAAGTTACAAGGAACTGGTATTTCTTCTGCTGCTTCTAGTGCTGCTGCTGGTGCTGCTTCATCAGGGAAGCCAGAAGAGGTCAAGCGTCTTCCAGGTGGGAAGGTAAAGAAAAAGGACAAGCAAGAGGTTATTATTGAGAAGGTCGTACGTAACAAACGAAAATCTATCACCACCGTGAAAGGCTTGGAACTTTTCGGCGTCAAGCTCAGTGATGCTTCAAAGAAACTCGGGAAAAAGTTTGCTACAGGAGCCTCCGTTGTCAAGGGCCCAACTGAGAAAGAGCAAATTGATGTACAAGGGGATATATCTTATGACGTCGTGGAATTCATTACAGATACATGGCCTGACGTTCCAGAAAGAGCAATTTTCTTTATAGAAGATGGGAAAAAGGTTCCAGCTGCTTGA

Protein sequence

>Msa0321960

MAEKPQPVRVLYCQVCSLPPEYCEFGGSDFEKCKPWLIQNVPDLYPNLLNEVNEKEVGKVADKLQGTGISSAASSAAAGAASSGKPEEVKRLPGGKVKKKDKQEVIIEKVVRNKRKSITTVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDVVEFITDTWPDVPERAIFFIEDGKKVPAA*