AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0690640


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0690640 MtrunA17_Chr4g0039401 97.887 142 3 0 1 142 1 142 3.44e-100 283
Msa0690640 MtrunA17_Chr5g0395831 57.042 142 34 1 1 142 1 115 5.29e-50 155
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0690640 AT1G67250.1 67.857 140 45 0 3 142 2 141 4.84e-69 205
Msa0690640 AT5G38650.1 67.857 140 45 0 3 142 2 141 9.52e-67 199
Msa0690640 AT5G38660.2 67.857 140 45 0 3 142 292 431 2.93e-63 199

Find 64 sgRNAs with CRISPR-Local

Find 257 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTTGTTCATTAGAATTAA+AGG 0.210110 4_4:+58533361 Msa0690640:three_prime_UTR
TTGACAGGCAAATTCTTTCT+AGG 0.239502 4_4:+58530129 Msa0690640:CDS
ACAAAATCGCTTATATATAA+AGG 0.263479 4_4:-58529550 None:intergenic
CACAAGTGTGCAATTAAATA+TGG 0.290293 4_4:-58533435 None:intergenic
CTGGGTTTGGAGACTGTTAC+AGG 0.300396 4_4:+58532037 Msa0690640:CDS
TCCTTCTTCAATGCTGGGTT+TGG 0.302948 4_4:+58532024 Msa0690640:CDS
AGTTCGCCTTGGTCTATCTA+AGG 0.328350 4_4:+58533259 Msa0690640:CDS
GGTAATTCCTTCTTCAATGC+TGG 0.336438 4_4:+58532018 Msa0690640:CDS
CAAAATCGCTTATATATAAA+GGG 0.365009 4_4:-58529549 None:intergenic
CACACCGATGTTCTTCGTTT+CGG 0.369713 4_4:+58529683 Msa0690640:CDS
AAATGTGTTTATATAATACT+TGG 0.379976 4_4:-58533293 None:intergenic
TCGGATGCTATAAATGTTAC+GGG 0.381859 4_4:+58533470 Msa0690640:three_prime_UTR
TGTAGGTTCCAGAGGCCTCC+AGG 0.394850 4_4:+58531995 Msa0690640:intron
CGGTGTGGACACCTCCGATT+TGG 0.398903 4_4:-58529667 None:intergenic
TGTTGTTCATTAGAATTAAA+GGG 0.410309 4_4:+58533362 Msa0690640:three_prime_UTR
ACTTGTGTTTGCCTATGTTT+CGG 0.421748 4_4:+58533409 Msa0690640:three_prime_UTR
ACTTGTGTTTGCCTATGTTT+CGG 0.421748 4_4:+58533451 Msa0690640:three_prime_UTR
TTCGGATGCTATAAATGTTA+CGG 0.422233 4_4:+58533469 Msa0690640:three_prime_UTR
GTAATTCCTTCTTCAATGCT+GGG 0.431838 4_4:+58532019 Msa0690640:CDS
GAATTACCCCTGGAGGCCTC+TGG 0.462918 4_4:-58532003 None:intergenic
CAATGCAAAGTGAACTTGTA+TGG 0.463197 4_4:+58530080 Msa0690640:CDS
AAGACCATTGCACACCAAAT+CGG 0.493784 4_4:+58529653 Msa0690640:CDS
ATGATTATGTGCTACTAAAG+AGG 0.505319 4_4:-58533512 None:intergenic
GTTCTTCGTTTCGGACTCCC+CGG 0.510103 4_4:+58529692 Msa0690640:CDS
ACAGGAACTCTTGATCACTT+TGG 0.516207 4_4:+58532055 Msa0690640:CDS
AAATATGGCATCCGAAACAT+AGG 0.518262 4_4:-58533420 None:intergenic
GTAGGTTCCAGAGGCCTCCA+GGG 0.520667 4_4:+58531996 Msa0690640:intron
ATTTATAGCATCCGAAACAT+AGG 0.521550 4_4:-58533462 None:intergenic
CATTAGAATTAAAGGGTCCA+TGG 0.523386 4_4:+58533369 Msa0690640:three_prime_UTR
TTGTTCCTTGTAGGTTCCAG+AGG 0.530160 4_4:+58531987 Msa0690640:intron
CACTCAAGGAGGAACTTGAC+AGG 0.531487 4_4:+58530114 Msa0690640:CDS
TATATAATACTTGGGTACAC+TGG 0.537892 4_4:-58533284 None:intergenic
TCCAAACCCAGCATTGAAGA+AGG 0.541603 4_4:-58532025 None:intergenic
ATTGGACATGCACCACGGAA+TGG 0.546291 4_4:+58533235 Msa0690640:CDS
CACGGAATGGAAGTTCGCCT+TGG 0.547717 4_4:+58533248 Msa0690640:CDS
CTTTCAGTATCGAGTTTCAG+TGG 0.553133 4_4:-58529577 None:intergenic
ATTCCGTGGTGCATGTCCAA+TGG 0.554833 4_4:-58533233 None:intergenic
GTGTGGAAGAAGCTATGAAA+AGG 0.569616 4_4:+58530057 Msa0690640:CDS
CTGTCAAGTTCCTCCTTGAG+TGG 0.571910 4_4:-58530113 None:intergenic
AATGTGTTTATATAATACTT+GGG 0.572452 4_4:-58533292 None:intergenic
AACGATGTCACTCTTGACAC+CGG 0.575887 4_4:-58529711 None:intergenic
GTGCAATTAAACATGGTCCA+TGG 0.587111 4_4:-58533386 None:intergenic
ACCTCCGATTTGGTGTGCAA+TGG 0.590824 4_4:-58529657 None:intergenic
CACAAGTGTGCAATTAAACA+TGG 0.593272 4_4:-58533393 None:intergenic
ACGATGTCACTCTTGACACC+GGG 0.595518 4_4:-58529710 None:intergenic
GTTCGCCTTGGTCTATCTAA+GGG 0.596428 4_4:+58533260 Msa0690640:CDS
CGGCCATTGGACATGCACCA+CGG 0.610558 4_4:+58533230 Msa0690640:CDS
CGAAAAGTCTCTGATTCACG+AGG 0.611926 4_4:-58533209 None:intergenic
ATTGAAGAAGGAATTACCCC+TGG 0.637004 4_4:-58532013 None:intergenic
GGTGTCAAGAGTGACATCGT+TGG 0.652058 4_4:+58529713 Msa0690640:CDS
ATTGGAGAGATGATTCGAGA+GGG 0.655080 4_4:-58529742 None:intergenic
CAAGGCGAACTTCCATTCCG+TGG 0.661589 4_4:-58533247 None:intergenic
TAGGTTCCAGAGGCCTCCAG+GGG 0.666008 4_4:+58531997 Msa0690640:intron
ACCATTGCACACCAAATCGG+AGG 0.670349 4_4:+58529656 Msa0690640:CDS
TGTGCTACTAAAGAGGTATG+CGG 0.679968 4_4:-58533505 None:intergenic
GATTGGAGAGATGATTCGAG+AGG 0.680344 4_4:-58529743 None:intergenic
TCGAAACACAGAAATCGACA+TGG 0.680505 4_4:+58529619 Msa0690640:exon
CGGATGCTATAAATGTTACG+GGG 0.684518 4_4:+58533471 Msa0690640:three_prime_UTR
GAGTCCGAAACGAAGAACAT+CGG 0.687032 4_4:-58529687 None:intergenic
CTGGTCCCTTAGATAGACCA+AGG 0.705296 4_4:-58533265 None:intergenic
GAAGAAGGAATTACCCCTGG+AGG 0.721691 4_4:-58532010 None:intergenic
GAAAAGTCTCTGATTCACGA+GGG 0.726373 4_4:-58533208 None:intergenic
CGAAACGAAGAACATCGGTG+TGG 0.742333 4_4:-58529682 None:intergenic
CGATGTCACTCTTGACACCG+GGG 0.751960 4_4:-58529709 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGTTTTTTATTTTAAAGTT+TGG + chr4_4:58529979-58529998 Msa0690640:intron 10.0%
!!! TTTAATTTATCTATTTTTCA+AGG + chr4_4:58530167-58530186 Msa0690640:intron 10.0%
!!! CTAAGAATTTTTTTTTTTTT+TGG + chr4_4:58531406-58531425 Msa0690640:intron 10.0%
!! TTACTATATTATTAACATAT+GGG - chr4_4:58531582-58531601 None:intergenic 10.0%
!! AATGAAAATGAAATATTATT+AGG + chr4_4:58532247-58532266 Msa0690640:intron 10.0%
!! ATGAAAATGAAATATTATTA+GGG + chr4_4:58532248-58532267 Msa0690640:intron 10.0%
!! TGAATTTAGGAAAAAAAAAT+AGG + chr4_4:58529891-58529910 Msa0690640:intron 15.0%
!! GAATTTAGGAAAAAAAAATA+GGG + chr4_4:58529892-58529911 Msa0690640:intron 15.0%
!! AAAATTTGTATTGTAGAAAT+TGG + chr4_4:58530583-58530602 Msa0690640:intron 15.0%
!! AAATTTGTATTGTAGAAATT+GGG + chr4_4:58530584-58530603 Msa0690640:intron 15.0%
!! TCAAATATAAAAGAAAGAAA+TGG + chr4_4:58531172-58531191 Msa0690640:intron 15.0%
!! AAAAAAAAAAATTCTTAGCA+GGG - chr4_4:58531404-58531423 None:intergenic 15.0%
!! AAAAAAAAAAAATTCTTAGC+AGG - chr4_4:58531405-58531424 None:intergenic 15.0%
!!! TTTTTTTTTTTGGAAAGAAT+AGG + chr4_4:58531416-58531435 Msa0690640:intron 15.0%
!! CTTACTATATTATTAACATA+TGG - chr4_4:58531583-58531602 None:intergenic 15.0%
!! AATGAAGCATAATTATAATA+TGG - chr4_4:58532386-58532405 None:intergenic 15.0%
!! ACCTTATATATAGATTATAT+AGG + chr4_4:58532555-58532574 Msa0690640:intron 15.0%
!! TCCTATATAATCTATATATA+AGG - chr4_4:58532559-58532578 None:intergenic 15.0%
!! AATCTTAATAATGATACAAA+TGG - chr4_4:58532738-58532757 None:intergenic 15.0%
!!! AATTTTTTAGTTTTAGCTAT+TGG + chr4_4:58533032-58533051 Msa0690640:intron 15.0%
!! AATGTGTTTATATAATACTT+GGG - chr4_4:58533295-58533314 None:intergenic 15.0%
!! AAATGTGTTTATATAATACT+TGG - chr4_4:58533296-58533315 None:intergenic 15.0%
!! CAAAATCGCTTATATATAAA+GGG - chr4_4:58529552-58529571 None:intergenic 20.0%
!! ACAAAATCGCTTATATATAA+AGG - chr4_4:58529553-58529572 None:intergenic 20.0%
!! TGAAAAAACAACAATTAGAT+CGG - chr4_4:58529830-58529849 None:intergenic 20.0%
!! GTTATATGATCTAATTGAAT+AGG + chr4_4:58529952-58529971 Msa0690640:intron 20.0%
!! AATTTGTATTGTAGAAATTG+GGG + chr4_4:58530585-58530604 Msa0690640:intron 20.0%
!! CACTATTAAAAAGATAAACT+CGG + chr4_4:58530860-58530879 Msa0690640:intron 20.0%
!! AATTTATTACTACATGCATT+GGG - chr4_4:58531251-58531270 None:intergenic 20.0%
!!! AGTATCTGAAATTAACATAT+GGG - chr4_4:58531494-58531513 None:intergenic 20.0%
!!! TAGTATCTGAAATTAACATA+TGG - chr4_4:58531495-58531514 None:intergenic 20.0%
!! CCAAAAAACAAAATAATGAA+AGG - chr4_4:58532114-58532133 None:intergenic 20.0%
!!! CCTTTCATTATTTTGTTTTT+TGG + chr4_4:58532111-58532130 Msa0690640:intron 20.0%
!!! ATATAAGGTTGAATGTTTTA+AGG - chr4_4:58532544-58532563 None:intergenic 20.0%
!!! TAAAAAATTATGATTTGTGC+AGG - chr4_4:58533021-58533040 None:intergenic 20.0%
!!! TTGTTGTTCATTAGAATTAA+AGG + chr4_4:58533361-58533380 Msa0690640:three_prime_UTR 20.0%
!! TGTTGTTCATTAGAATTAAA+GGG + chr4_4:58533362-58533381 Msa0690640:three_prime_UTR 20.0%
! AATTGAAACAGAAAGAAAGA+GGG - chr4_4:58529775-58529794 None:intergenic 25.0%
! AAATTGAAACAGAAAGAAAG+AGG - chr4_4:58529776-58529795 None:intergenic 25.0%
! AAACACGAAAAGATTAAAAC+AGG - chr4_4:58529799-58529818 None:intergenic 25.0%
! GAAAAAACAACAATTAGATC+GGG - chr4_4:58529829-58529848 None:intergenic 25.0%
!!! TATGTGTGTTTGTTTTCATT+TGG + chr4_4:58530014-58530033 Msa0690640:intron 25.0%
!!! ATGTGTGTTTGTTTTCATTT+GGG + chr4_4:58530015-58530034 Msa0690640:intron 25.0%
! TTGAAAGGAAAATACTTTCT+GGG + chr4_4:58530430-58530449 Msa0690640:intron 25.0%
! ATTTGTATTGTAGAAATTGG+GGG + chr4_4:58530586-58530605 Msa0690640:intron 25.0%
! CAATTTATTACTACATGCAT+TGG - chr4_4:58531252-58531271 None:intergenic 25.0%
! ACAAATAAATTAACGTGCTA+TGG + chr4_4:58531272-58531291 Msa0690640:intron 25.0%
! AGCAAATCTTATGTTTAAAG+AGG + chr4_4:58531359-58531378 Msa0690640:intron 25.0%
!! AAGATTCATATGGATTTTGA+CGG - chr4_4:58531617-58531636 None:intergenic 25.0%
!! TTCATTCACAGTTCATATTT+TGG + chr4_4:58531730-58531749 Msa0690640:intron 25.0%
!! TCATTCACAGTTCATATTTT+GGG + chr4_4:58531731-58531750 Msa0690640:intron 25.0%
!!! GGTTTTGAAGATTTTCTAAA+TGG + chr4_4:58532076-58532095 Msa0690640:CDS 25.0%
! GTGTTCATTATTGAAACATT+TGG + chr4_4:58532136-58532155 Msa0690640:intron 25.0%
! ACTAGTTAAGGAAACAAAAA+AGG + chr4_4:58532282-58532301 Msa0690640:intron 25.0%
! AACTCTTACTCTATTATTAG+TGG + chr4_4:58532419-58532438 Msa0690640:intron 25.0%
! TATTATGCATAACTAAGCTT+TGG + chr4_4:58532499-58532518 Msa0690640:intron 25.0%
!! ATATAGGAGTAAGATGTTTT+TGG + chr4_4:58532571-58532590 Msa0690640:intron 25.0%
! ACAATCATCTCAAAACAAAA+AGG - chr4_4:58532614-58532633 None:intergenic 25.0%
!!! AGCTTTATTGTGATTATGAT+GGG + chr4_4:58532695-58532714 Msa0690640:intron 25.0%
! GTATCATTATTAAGATTCCA+AGG + chr4_4:58532741-58532760 Msa0690640:intron 25.0%
! GCTTAAAATATTAACACTAG+TGG - chr4_4:58532957-58532976 None:intergenic 25.0%
!!! CTAGTGTTAATATTTTAAGC+AGG + chr4_4:58532957-58532976 Msa0690640:intron 25.0%
!!! CAGGCTATTTATAACTTTTT+TGG - chr4_4:58533002-58533021 None:intergenic 25.0%
!!! TTTAGTTTTAGCTATTGGAT+TGG + chr4_4:58533037-58533056 Msa0690640:intron 25.0%
!! TGTATGTTGCTTATTATTTG+TGG + chr4_4:58533107-58533126 Msa0690640:intron 25.0%
!! AGCACATAATCATGTATTTT+AGG + chr4_4:58533522-58533541 Msa0690640:three_prime_UTR 25.0%
!!! ATTTCCAGGGTTTTGAATTT+AGG + chr4_4:58529878-58529897 Msa0690640:intron 30.0%
! TTTTCCTAAATTCAAAACCC+TGG - chr4_4:58529885-58529904 None:intergenic 30.0%
!!! TTCATTTGGGTGTTGTTTTT+AGG + chr4_4:58530028-58530047 Msa0690640:intron 30.0%
ACTCACTACTAATACAAACA+AGG - chr4_4:58530229-58530248 None:intergenic 30.0%
AGTGAGTGTTTGAATTTGTA+TGG + chr4_4:58530242-58530261 Msa0690640:intron 30.0%
AGTGTTTGAATTTGTATGGT+AGG + chr4_4:58530246-58530265 Msa0690640:intron 30.0%
TGAATGTGAGTTAACTAACT+TGG + chr4_4:58530376-58530395 Msa0690640:intron 30.0%
CTTGAAAGGAAAATACTTTC+TGG + chr4_4:58530429-58530448 Msa0690640:intron 30.0%
! CTCTCTACTTGTTAAAAACA+AGG - chr4_4:58530559-58530578 None:intergenic 30.0%
CGAACACATTTCTTCATAAT+CGG - chr4_4:58530979-58530998 None:intergenic 30.0%
!! TCTTCTAAAGCTCTTTGATT+TGG - chr4_4:58531066-58531085 None:intergenic 30.0%
! TCTTATGTTTAAAGAGGCAT+CGG + chr4_4:58531365-58531384 Msa0690640:intron 30.0%
TCAGATCCTATTCTTTCATA+TGG + chr4_4:58531523-58531542 Msa0690640:intron 30.0%
CCATATCCATATGAAAGAAT+AGG - chr4_4:58531532-58531551 None:intergenic 30.0%
CCTATTCTTTCATATGGATA+TGG + chr4_4:58531529-58531548 Msa0690640:intron 30.0%
!! AGATTCATATGGATTTTGAC+GGG - chr4_4:58531616-58531635 None:intergenic 30.0%
GGTGACTGAAATTAACATAT+GGG - chr4_4:58531666-58531685 None:intergenic 30.0%
CATATGTTAATTTCAGTCAC+CGG + chr4_4:58531665-58531684 Msa0690640:intron 30.0%
ATATGTTAATTTCAGTCACC+GGG + chr4_4:58531666-58531685 Msa0690640:intron 30.0%
AATGAAATTTCTACTAGGAG+TGG - chr4_4:58531716-58531735 None:intergenic 30.0%
CTGTGAATGAAATTTCTACT+AGG - chr4_4:58531721-58531740 None:intergenic 30.0%
!! ACAGTTCATATTTTGGGTAA+TGG + chr4_4:58531737-58531756 Msa0690640:intron 30.0%
!! CAGTTCATATTTTGGGTAAT+GGG + chr4_4:58531738-58531757 Msa0690640:intron 30.0%
!! AGTTCATATTTTGGGTAATG+GGG + chr4_4:58531739-58531758 Msa0690640:intron 30.0%
TACAAGGAACAATGGTAATA+TGG - chr4_4:58531979-58531998 None:intergenic 30.0%
ATATTACCATTGTTCCTTGT+AGG + chr4_4:58531978-58531997 Msa0690640:intron 30.0%
TTACTGTACTTGTTTCCTTA+AGG + chr4_4:58532343-58532362 Msa0690640:intron 30.0%
TACTGTACTTGTTTCCTTAA+GGG + chr4_4:58532344-58532363 Msa0690640:intron 30.0%
! GTTAGAATTGTTTTCCTGTT+TGG + chr4_4:58532468-58532487 Msa0690640:intron 30.0%
ATAATAAAGTTGAGCCAAAC+AGG - chr4_4:58532485-58532504 None:intergenic 30.0%
AACTACAATCTGATAGATAC+CGG - chr4_4:58532655-58532674 None:intergenic 30.0%
!! GAGCTTTATTGTGATTATGA+TGG + chr4_4:58532694-58532713 Msa0690640:intron 30.0%
! GCTTTATTGTGATTATGATG+GGG + chr4_4:58532696-58532715 Msa0690640:intron 30.0%
TACAAATGGAACATAATTGC+AGG - chr4_4:58532724-58532743 None:intergenic 30.0%
! ACACTTTAAATTGATAACCG+TGG + chr4_4:58532774-58532793 Msa0690640:intron 30.0%
TATATAATACTTGGGTACAC+TGG - chr4_4:58533287-58533306 None:intergenic 30.0%
CACAAGTGTGCAATTAAATA+TGG - chr4_4:58533438-58533457 None:intergenic 30.0%
ATTTATAGCATCCGAAACAT+AGG - chr4_4:58533465-58533484 None:intergenic 30.0%
TTCGGATGCTATAAATGTTA+CGG + chr4_4:58533469-58533488 Msa0690640:three_prime_UTR 30.0%
! ATGATTATGTGCTACTAAAG+AGG - chr4_4:58533515-58533534 None:intergenic 30.0%
AAGAAAGAGGGATTACAGAT+TGG - chr4_4:58529763-58529782 None:intergenic 35.0%
! TTTTGATGTTAGCGATTTCC+AGG + chr4_4:58529864-58529883 Msa0690640:intron 35.0%
TTTGATGTTAGCGATTTCCA+GGG + chr4_4:58529865-58529884 Msa0690640:intron 35.0%
!!! TTGGGTGTTGTTTTTAGGTA+AGG + chr4_4:58530033-58530052 Msa0690640:intron 35.0%
!!! TGGGTGTTGTTTTTAGGTAA+GGG + chr4_4:58530034-58530053 Msa0690640:intron 35.0%
CAATGCAAAGTGAACTTGTA+TGG + chr4_4:58530080-58530099 Msa0690640:CDS 35.0%
TTGACAGGCAAATTCTTTCT+AGG + chr4_4:58530129-58530148 Msa0690640:CDS 35.0%
AGGCAAATTCTTTCTAGGTA+CGG + chr4_4:58530134-58530153 Msa0690640:intron 35.0%
TTCAATCGCAGCTCATATAT+TGG + chr4_4:58530272-58530291 Msa0690640:intron 35.0%
TCAATCGCAGCTCATATATT+GGG + chr4_4:58530273-58530292 Msa0690640:intron 35.0%
AGCTCATATATTGGGGAAAT+AGG + chr4_4:58530281-58530300 Msa0690640:intron 35.0%
GTGAGTTAACTAACTTGGTA+TGG + chr4_4:58530381-58530400 Msa0690640:intron 35.0%
!! TTTCAAGTTCCTCATTCAGT+AGG - chr4_4:58530416-58530435 None:intergenic 35.0%
TACTGAATGAGGAACTTGAA+AGG + chr4_4:58530415-58530434 Msa0690640:intron 35.0%
AGATATCTCAACTGTGGTTA+TGG - chr4_4:58530652-58530671 None:intergenic 35.0%
! CACTGTGAAATCTGAGATAT+AGG - chr4_4:58530771-58530790 None:intergenic 35.0%
CTCTCAAGTCAAAGTTTACA+TGG - chr4_4:58530901-58530920 None:intergenic 35.0%
! TTTGAGACTCACAAATTGAC+AGG - chr4_4:58531340-58531359 None:intergenic 35.0%
ATATGGGAAACCATATCCAA+CGG - chr4_4:58531478-58531497 None:intergenic 35.0%
GTTGGGTACTAAGATTCATA+TGG - chr4_4:58531627-58531646 None:intergenic 35.0%
GACTGAAATTAACATATGGG+TGG - chr4_4:58531663-58531682 None:intergenic 35.0%
CGGTGACTGAAATTAACATA+TGG - chr4_4:58531667-58531686 None:intergenic 35.0%
GAATGCAAGCTAAATCATGT+TGG + chr4_4:58531781-58531800 Msa0690640:intron 35.0%
GCAAATCATCAAATCACATG+AGG - chr4_4:58531880-58531899 None:intergenic 35.0%
TTTATTGCTAAGAGAGAGAG+TGG + chr4_4:58531935-58531954 Msa0690640:intron 35.0%
GTAATTCCTTCTTCAATGCT+GGG + chr4_4:58532019-58532038 Msa0690640:CDS 35.0%
TCATTCAGCAAAAGAAGCAA+CGG - chr4_4:58532232-58532251 None:intergenic 35.0%
AACCCCAATTATATCAAGCA+GGG - chr4_4:58532446-58532465 None:intergenic 35.0%
TAACCCCAATTATATCAAGC+AGG - chr4_4:58532447-58532466 None:intergenic 35.0%
! AAAGTGTCATGTAAAGTCCT+TGG - chr4_4:58532761-58532780 None:intergenic 35.0%
!! TATGTTAGACTCTGAAACCA+CGG - chr4_4:58532794-58532813 None:intergenic 35.0%
TGGGATCCATGATATAGTTA+AGG + chr4_4:58533074-58533093 Msa0690640:intron 35.0%
CGCAATCCTTAACTATATCA+TGG - chr4_4:58533083-58533102 None:intergenic 35.0%
GCTTATTATTTGTGGCTCAT+TGG + chr4_4:58533115-58533134 Msa0690640:intron 35.0%
CACATTAACAACGTTGAGAA+AGG - chr4_4:58533179-58533198 None:intergenic 35.0%
CTTTCTCAACGTTGTTAATG+TGG + chr4_4:58533177-58533196 Msa0690640:intron 35.0%
CATTAGAATTAAAGGGTCCA+TGG + chr4_4:58533369-58533388 Msa0690640:three_prime_UTR 35.0%
CACAAGTGTGCAATTAAACA+TGG - chr4_4:58533396-58533415 None:intergenic 35.0%
ACTTGTGTTTGCCTATGTTT+CGG + chr4_4:58533409-58533428 Msa0690640:three_prime_UTR 35.0%
AAATATGGCATCCGAAACAT+AGG - chr4_4:58533423-58533442 None:intergenic 35.0%
ACTTGTGTTTGCCTATGTTT+CGG + chr4_4:58533409-58533428 Msa0690640:three_prime_UTR 35.0%
TCGGATGCTATAAATGTTAC+GGG + chr4_4:58533470-58533489 Msa0690640:three_prime_UTR 35.0%
!! AGAGGTATGCGGTTTTTATA+TGG - chr4_4:58533497-58533516 None:intergenic 35.0%
! CTTTCAGTATCGAGTTTCAG+TGG - chr4_4:58529580-58529599 None:intergenic 40.0%
TCGAAACACAGAAATCGACA+TGG + chr4_4:58529619-58529638 Msa0690640:exon 40.0%
AAGACCATTGCACACCAAAT+CGG + chr4_4:58529653-58529672 Msa0690640:CDS 40.0%
ATTGGAGAGATGATTCGAGA+GGG - chr4_4:58529745-58529764 None:intergenic 40.0%
!!! GGGTGTTGTTTTTAGGTAAG+GGG + chr4_4:58530035-58530054 Msa0690640:intron 40.0%
!!! TTGTTTTTAGGTAAGGGGTG+TGG + chr4_4:58530040-58530059 Msa0690640:intron 40.0%
GTGTGGAAGAAGCTATGAAA+AGG + chr4_4:58530057-58530076 Msa0690640:CDS 40.0%
GGCAAATTCTTTCTAGGTAC+GGG + chr4_4:58530135-58530154 Msa0690640:intron 40.0%
CAATCGCAGCTCATATATTG+GGG + chr4_4:58530274-58530293 Msa0690640:intron 40.0%
TGGGGAAATAGGACAAACAA+TGG + chr4_4:58530292-58530311 Msa0690640:intron 40.0%
!! AGCTGTTTTCCTACTGAATG+AGG + chr4_4:58530404-58530423 Msa0690640:intron 40.0%
ACTTTCTGGGTACGAGTATT+TGG + chr4_4:58530443-58530462 Msa0690640:intron 40.0%
TGTATTGTAGAAATTGGGGG+TGG + chr4_4:58530589-58530608 Msa0690640:intron 40.0%
ATCTCAACTGTGGTTATGGA+AGG - chr4_4:58530648-58530667 None:intergenic 40.0%
GGATGTAGATATCTCAACTG+TGG - chr4_4:58530658-58530677 None:intergenic 40.0%
AAGCAGTCAAGATGATTGTG+TGG + chr4_4:58531087-58531106 Msa0690640:intron 40.0%
TTAATTTCAGTCACCGGGTT+TGG + chr4_4:58531671-58531690 Msa0690640:intron 40.0%
AAACAGCATATGACCAAACC+CGG - chr4_4:58531687-58531706 None:intergenic 40.0%
!!! ATTTTGGGTAATGGGGACAT+AGG + chr4_4:58531746-58531765 Msa0690640:intron 40.0%
GTTAACTAACAGCGCAATGT+TGG + chr4_4:58531843-58531862 Msa0690640:intron 40.0%
ATTGAAGAAGGAATTACCCC+TGG - chr4_4:58532016-58532035 None:intergenic 40.0%
GGTAATTCCTTCTTCAATGC+TGG + chr4_4:58532018-58532037 Msa0690640:CDS 40.0%
ACAGGAACTCTTGATCACTT+TGG + chr4_4:58532055-58532074 Msa0690640:CDS 40.0%
GTCATGCAAGACACTAGTTA+AGG + chr4_4:58532270-58532289 Msa0690640:intron 40.0%
AATGCTAACTAGTGCCCTTA+AGG - chr4_4:58532361-58532380 None:intergenic 40.0%
TGGTCCCTGCTTGATATAAT+TGG + chr4_4:58532439-58532458 Msa0690640:intron 40.0%
GGTCCCTGCTTGATATAATT+GGG + chr4_4:58532440-58532459 Msa0690640:intron 40.0%
GTCCCTGCTTGATATAATTG+GGG + chr4_4:58532441-58532460 Msa0690640:intron 40.0%
ATTGTGTCAGACTTCAGATC+AGG + chr4_4:58532629-58532648 Msa0690640:intron 40.0%
!! ATTGGTTCTGTCGTGAACTT+GGG + chr4_4:58533055-58533074 Msa0690640:intron 40.0%
!! ATGTGGCACTTTGTTGTTGT+TGG + chr4_4:58533139-58533158 Msa0690640:intron 40.0%
GAAAAGTCTCTGATTCACGA+GGG - chr4_4:58533211-58533230 None:intergenic 40.0%
! CTCGTGAATCAGAGACTTTT+CGG + chr4_4:58533210-58533229 Msa0690640:CDS 40.0%
GTGCAATTAAACATGGTCCA+TGG - chr4_4:58533389-58533408 None:intergenic 40.0%
CGGATGCTATAAATGTTACG+GGG + chr4_4:58533471-58533490 Msa0690640:three_prime_UTR 40.0%
! TGTGCTACTAAAGAGGTATG+CGG - chr4_4:58533508-58533527 None:intergenic 40.0%
CACACCGATGTTCTTCGTTT+CGG + chr4_4:58529683-58529702 Msa0690640:CDS 45.0%
GAGTCCGAAACGAAGAACAT+CGG - chr4_4:58529690-58529709 None:intergenic 45.0%
AACGATGTCACTCTTGACAC+CGG - chr4_4:58529714-58529733 None:intergenic 45.0%
GATTGGAGAGATGATTCGAG+AGG - chr4_4:58529746-58529765 None:intergenic 45.0%
AGAAATTGGGGGTGGATGAT+CGG + chr4_4:58530597-58530616 Msa0690640:intron 45.0%
CAATCCACATTCCAAACGGA+CGG - chr4_4:58530685-58530704 None:intergenic 45.0%
CGACCAATCCACATTCCAAA+CGG - chr4_4:58530689-58530708 None:intergenic 45.0%
!! CGTTTGGAATGTGGATTGGT+CGG + chr4_4:58530687-58530706 Msa0690640:intron 45.0%
!! GTTTGGAATGTGGATTGGTC+GGG + chr4_4:58530688-58530707 Msa0690640:intron 45.0%
GTGTTCGAATCACCATGCTT+AGG + chr4_4:58530992-58531011 Msa0690640:intron 45.0%
TTCGAATCACCATGCTTAGG+TGG + chr4_4:58530995-58531014 Msa0690640:intron 45.0%
TGCAATATGCCACCTAAGCA+TGG - chr4_4:58531007-58531026 None:intergenic 45.0%
TCAAGATGATTGTGTGGCAG+TGG + chr4_4:58531093-58531112 Msa0690640:intron 45.0%
TGACTCAAGCTCAAGAGTAG+AGG - chr4_4:58531155-58531174 None:intergenic 45.0%
ACATATGGGTGGTCTCTTGT+GGG - chr4_4:58531652-58531671 None:intergenic 45.0%
AACATATGGGTGGTCTCTTG+TGG - chr4_4:58531653-58531672 None:intergenic 45.0%
CTGGAACCTACAAGGAACAA+TGG - chr4_4:58531987-58532006 None:intergenic 45.0%
TTGTTCCTTGTAGGTTCCAG+AGG + chr4_4:58531987-58532006 Msa0690640:intron 45.0%
TCCTTCTTCAATGCTGGGTT+TGG + chr4_4:58532024-58532043 Msa0690640:CDS 45.0%
! TCCAAACCCAGCATTGAAGA+AGG - chr4_4:58532028-58532047 None:intergenic 45.0%
!! GATTGGTTCTGTCGTGAACT+TGG + chr4_4:58533054-58533073 Msa0690640:intron 45.0%
ATTTGTGGCTCATTGGCATG+TGG + chr4_4:58533122-58533141 Msa0690640:intron 45.0%
CGAAAAGTCTCTGATTCACG+AGG - chr4_4:58533212-58533231 None:intergenic 45.0%
! ATCAGAGACTTTTCGGCCAT+TGG + chr4_4:58533217-58533236 Msa0690640:CDS 45.0%
AGTTCGCCTTGGTCTATCTA+AGG + chr4_4:58533259-58533278 Msa0690640:CDS 45.0%
GTTCGCCTTGGTCTATCTAA+GGG + chr4_4:58533260-58533279 Msa0690640:CDS 45.0%
ACCATTGCACACCAAATCGG+AGG + chr4_4:58529656-58529675 Msa0690640:CDS 50.0%
!! ACCTCCGATTTGGTGTGCAA+TGG - chr4_4:58529660-58529679 None:intergenic 50.0%
CGAAACGAAGAACATCGGTG+TGG - chr4_4:58529685-58529704 None:intergenic 50.0%
ACGATGTCACTCTTGACACC+GGG - chr4_4:58529713-58529732 None:intergenic 50.0%
GGTGTCAAGAGTGACATCGT+TGG + chr4_4:58529713-58529732 Msa0690640:CDS 50.0%
!!! TGGAGCTGCTTTTCCACTCA+AGG + chr4_4:58530100-58530119 Msa0690640:CDS 50.0%
!!! AGCTGCTTTTCCACTCAAGG+AGG + chr4_4:58530103-58530122 Msa0690640:CDS 50.0%
CTGTCAAGTTCCTCCTTGAG+TGG - chr4_4:58530116-58530135 None:intergenic 50.0%
CACTCAAGGAGGAACTTGAC+AGG + chr4_4:58530114-58530133 Msa0690640:CDS 50.0%
TACATCCATCACCGTCCGTT+TGG + chr4_4:58530671-58530690 Msa0690640:intron 50.0%
ACATTCCAAACGGACGGTGA+TGG - chr4_4:58530679-58530698 None:intergenic 50.0%
! ATCACCGTCCGTTTGGAATG+TGG + chr4_4:58530678-58530697 Msa0690640:intron 50.0%
! CGTCCGTTTGGAATGTGGAT+TGG + chr4_4:58530683-58530702 Msa0690640:intron 50.0%
TGTGGCAGTGGCAAGTATTC+TGG + chr4_4:58531105-58531124 Msa0690640:intron 50.0%
TGGATATGGTTGTCGCGCAT+CGG + chr4_4:58531543-58531562 Msa0690640:intron 50.0%
!! TGTCGCGCATCGGTTGAATA+TGG + chr4_4:58531553-58531572 Msa0690640:intron 50.0%
! GTGGTCTCTTGTGGGTTGTT+GGG - chr4_4:58531644-58531663 None:intergenic 50.0%
ACTAACAGCGCAATGTTGGC+TGG + chr4_4:58531847-58531866 Msa0690640:intron 50.0%
GAAGAAGGAATTACCCCTGG+AGG - chr4_4:58532013-58532032 None:intergenic 50.0%
CTGGGTTTGGAGACTGTTAC+AGG + chr4_4:58532037-58532056 Msa0690640:CDS 50.0%
TGTCAGACTTCAGATCAGGC+CGG + chr4_4:58532633-58532652 Msa0690640:intron 50.0%
ATTCCGTGGTGCATGTCCAA+TGG - chr4_4:58533236-58533255 None:intergenic 50.0%
ATTGGACATGCACCACGGAA+TGG + chr4_4:58533235-58533254 Msa0690640:CDS 50.0%
CTGGTCCCTTAGATAGACCA+AGG - chr4_4:58533268-58533287 None:intergenic 50.0%
GTTCTTCGTTTCGGACTCCC+CGG + chr4_4:58529692-58529711 Msa0690640:CDS 55.0%
CGATGTCACTCTTGACACCG+GGG - chr4_4:58529712-58529731 None:intergenic 55.0%
ATTGGGGGTGGATGATCGGT+TGG + chr4_4:58530601-58530620 Msa0690640:intron 55.0%
!! AATGTGGATTGGTCGGGTCG+TGG + chr4_4:58530694-58530713 Msa0690640:intron 55.0%
!! CGTGGATTGGTTGGGCTTTC+AGG + chr4_4:58530712-58530731 Msa0690640:intron 55.0%
CAACGGATGCGCTGCTATTC+TGG - chr4_4:58531461-58531480 None:intergenic 55.0%
CAGAATAGCAGCGCATCCGT+TGG + chr4_4:58531459-58531478 Msa0690640:intron 55.0%
AGCAGCGCATCCGTTGGATA+TGG + chr4_4:58531465-58531484 Msa0690640:intron 55.0%
! GGTGGTCTCTTGTGGGTTGT+TGG - chr4_4:58531645-58531664 None:intergenic 55.0%
CAAGGCGAACTTCCATTCCG+TGG - chr4_4:58533250-58533269 None:intergenic 55.0%
CACGGAATGGAAGTTCGCCT+TGG + chr4_4:58533248-58533267 Msa0690640:CDS 55.0%
CGGTGTGGACACCTCCGATT+TGG - chr4_4:58529670-58529689 None:intergenic 60.0%
!! GGATTGGTCGGGTCGTGGAT+TGG + chr4_4:58530699-58530718 Msa0690640:intron 60.0%
!! TGGTCGGGTCGTGGATTGGT+TGG + chr4_4:58530703-58530722 Msa0690640:intron 60.0%
!! GGTCGGGTCGTGGATTGGTT+GGG + chr4_4:58530704-58530723 Msa0690640:intron 60.0%
! ACAGCGCAATGTTGGCTGGC+TGG + chr4_4:58531851-58531870 Msa0690640:intron 60.0%
!! GGAGGCCTCTGGAACCTACA+AGG - chr4_4:58531995-58532014 None:intergenic 60.0%
TGTAGGTTCCAGAGGCCTCC+AGG + chr4_4:58531995-58532014 Msa0690640:intron 60.0%
GTAGGTTCCAGAGGCCTCCA+GGG + chr4_4:58531996-58532015 Msa0690640:intron 60.0%
TAGGTTCCAGAGGCCTCCAG+GGG + chr4_4:58531997-58532016 Msa0690640:intron 60.0%
GAATTACCCCTGGAGGCCTC+TGG - chr4_4:58532006-58532025 None:intergenic 60.0%
CGGCCATTGGACATGCACCA+CGG + chr4_4:58533230-58533249 Msa0690640:CDS 60.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 58529539 58533584 58529539 ID=Msa0690640;Name=Msa0690640
chr4_4 mRNA 58529539 58533584 58529539 ID=Msa0690640-mRNA-1;Parent=Msa0690640;Name=Msa0690640-mRNA-1;_AED=0.01;_eAED=0.01;_QI=99|1|1|1|0.66|1|4|277|142
chr4_4 exon 58529539 58529766 58529539 ID=Msa0690640-mRNA-1:exon:15718;Parent=Msa0690640-mRNA-1
chr4_4 exon 58530050 58530150 58530050 ID=Msa0690640-mRNA-1:exon:15719;Parent=Msa0690640-mRNA-1
chr4_4 exon 58532000 58532097 58532000 ID=Msa0690640-mRNA-1:exon:15720;Parent=Msa0690640-mRNA-1
chr4_4 exon 58533207 58533584 58533207 ID=Msa0690640-mRNA-1:exon:15721;Parent=Msa0690640-mRNA-1
chr4_4 five_prime_UTR 58529539 58529637 58529539 ID=Msa0690640-mRNA-1:five_prime_utr;Parent=Msa0690640-mRNA-1
chr4_4 CDS 58529638 58529766 58529638 ID=Msa0690640-mRNA-1:cds;Parent=Msa0690640-mRNA-1
chr4_4 CDS 58530050 58530150 58530050 ID=Msa0690640-mRNA-1:cds;Parent=Msa0690640-mRNA-1
chr4_4 CDS 58532000 58532097 58532000 ID=Msa0690640-mRNA-1:cds;Parent=Msa0690640-mRNA-1
chr4_4 CDS 58533207 58533307 58533207 ID=Msa0690640-mRNA-1:cds;Parent=Msa0690640-mRNA-1
chr4_4 three_prime_UTR 58533308 58533584 58533308 ID=Msa0690640-mRNA-1:three_prime_utr;Parent=Msa0690640-mRNA-1
Gene Sequence

>Msa0690640

ATGGAAGAAGAATCAAAGACCATTGCACACCAAATCGGAGGTGTCCACACCGATGTTCTTCGTTTCGGACTCCCCGGTGTCAAGAGTGACATCGTTGGTGCTCACCCTCTCGAATCATCTCTCCAATCTGTAAGGGGTGTGGAAGAAGCTATGAAAAGGCAATGCAAAGTGAACTTGTATGGAGCTGCTTTTCCACTCAAGGAGGAACTTGACAGGCAAATTCTTTCTAGGTTCCAGAGGCCTCCAGGGGTAATTCCTTCTTCAATGCTGGGTTTGGAGACTGTTACAGGAACTCTTGATCACTTTGGTTTTGAAGATTTTCTAAATGACCCTCGTGAATCAGAGACTTTTCGGCCATTGGACATGCACCACGGAATGGAAGTTCGCCTTGGTCTATCTAAGGGACCAGTGTACCCAAGTATTATATAA

Protein sequence

>Msa0690640

MEEESKTIAHQIGGVHTDVLRFGLPGVKSDIVGAHPLESSLQSVRGVEEAMKRQCKVNLYGAAFPLKEELDRQILSRFQRPPGVIPSSMLGLETVTGTLDHFGFEDFLNDPRESETFRPLDMHHGMEVRLGLSKGPVYPSII*