Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0691410 | XP_013456684.1 | 67.769 | 121 | 7 | 2 | 4 | 92 | 38 | 158 | 5.13e-43 | 152 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0691410 | sp|O49459|NAC73_ARATH | 54.622 | 119 | 22 | 2 | 6 | 92 | 51 | 169 | 8.49e-34 | 121 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0691410 | A0A072UXW5 | 67.769 | 121 | 7 | 2 | 4 | 92 | 38 | 158 | 2.45e-43 | 152 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0691410 | TF | NAC |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0083920 | Msa0691410 | 0.803136 | 4.026375e-49 | -8.615850e-47 |
| Msa0691410 | Msa1166400 | 0.802254 | 6.122894e-49 | -8.615850e-47 |
| Msa0554810 | Msa0691410 | 0.821295 | 4.357097e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0691410 | MtrunA17_Chr4g0040541 | 67.769 | 121 | 7 | 2 | 4 | 92 | 38 | 158 | 4.72e-47 | 152 |
| Msa0691410 | MtrunA17_Chr2g0324961 | 58.678 | 121 | 17 | 2 | 4 | 92 | 39 | 158 | 1.05e-37 | 128 |
| Msa0691410 | MtrunA17_Chr4g0046431 | 58.407 | 113 | 14 | 2 | 7 | 87 | 61 | 172 | 4.27e-34 | 119 |
| Msa0691410 | MtrunA17_Chr2g0282871 | 55.652 | 115 | 18 | 2 | 7 | 89 | 46 | 159 | 4.99e-34 | 119 |
| Msa0691410 | MtrunA17_Chr8g0367761 | 58.929 | 112 | 13 | 2 | 7 | 86 | 61 | 171 | 5.82e-34 | 117 |
| Msa0691410 | MtrunA17_Chr8g0389661 | 48.780 | 123 | 25 | 2 | 7 | 91 | 40 | 162 | 2.23e-26 | 101 |
| Msa0691410 | MtrunA17_Chr5g0422431 | 39.474 | 114 | 35 | 2 | 8 | 89 | 52 | 163 | 1.22e-17 | 76.6 |
| Msa0691410 | MtrunA17_Chr1g0198751 | 40.179 | 112 | 33 | 3 | 10 | 89 | 54 | 163 | 3.24e-17 | 75.5 |
| Msa0691410 | MtrunA17_Chr1g0198741 | 53.846 | 52 | 23 | 1 | 38 | 89 | 8 | 58 | 3.29e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0691410 | AT4G28500.1 | 54.622 | 119 | 22 | 2 | 6 | 92 | 51 | 169 | 8.63e-35 | 121 |
| Msa0691410 | AT1G28470.1 | 53.913 | 115 | 20 | 2 | 8 | 90 | 71 | 184 | 2.24e-29 | 107 |
| Msa0691410 | AT4G29230.3 | 47.541 | 122 | 25 | 2 | 9 | 91 | 43 | 164 | 9.02e-26 | 99.8 |
| Msa0691410 | AT4G29230.2 | 47.244 | 127 | 28 | 2 | 4 | 91 | 37 | 163 | 9.36e-26 | 100 |
| Msa0691410 | AT4G29230.1 | 47.934 | 121 | 24 | 2 | 10 | 91 | 44 | 164 | 1.24e-25 | 99.8 |
| Msa0691410 | AT5G56620.2 | 46.281 | 121 | 23 | 4 | 13 | 91 | 42 | 162 | 4.25e-23 | 92.0 |
| Msa0691410 | AT5G56620.3 | 46.281 | 121 | 23 | 4 | 13 | 91 | 42 | 162 | 4.61e-23 | 92.0 |
| Msa0691410 | AT5G56620.1 | 46.281 | 121 | 23 | 4 | 13 | 91 | 42 | 162 | 4.95e-23 | 91.7 |
| Msa0691410 | AT1G25580.1 | 41.441 | 111 | 31 | 3 | 8 | 86 | 52 | 160 | 3.55e-18 | 78.6 |
| Msa0691410 | AT3G01600.1 | 38.318 | 107 | 34 | 2 | 12 | 86 | 53 | 159 | 1.78e-15 | 70.9 |
Find 24 sgRNAs with CRISPR-Local
Find 312 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAGAGATTCTTGAACTTT+TGG | 0.229768 | 4_4:+59509844 | Msa0691410:CDS |
| GACTTGCCTGGATTGCCTGC+TGG | 0.422435 | 4_4:+59509800 | Msa0691410:CDS |
| TCAAGAATCTCTTGATCTGT+TGG | 0.433811 | 4_4:-59509836 | None:intergenic |
| ATGTTAGTCTTTACCAAGCA+TGG | 0.442706 | 4_4:-59510525 | None:intergenic |
| TGTTCCTGTTGTGTATGCCT+TGG | 0.446215 | 4_4:-59510376 | None:intergenic |
| GAAACCTGTTGGCACAAAAC+AGG | 0.450708 | 4_4:+59510441 | Msa0691410:CDS |
| AACTTAGAATTGTTGTAGAC+TGG | 0.461906 | 4_4:-59510474 | None:intergenic |
| CCATCCAAGGCATACACAAC+AGG | 0.469431 | 4_4:+59510372 | Msa0691410:CDS |
| TTCACTCCAGCAGGCAATCC+AGG | 0.479611 | 4_4:-59509806 | None:intergenic |
| AGTGGAATTAATGACTTGCC+TGG | 0.490603 | 4_4:+59509788 | Msa0691410:CDS |
| TGAATATTTCATTAGGGGAG+TGG | 0.493940 | 4_4:+59509770 | Msa0691410:intron |
| TGTTAGTCTTTACCAAGCAT+GGG | 0.512819 | 4_4:-59510524 | None:intergenic |
| GGATCAAACTTCACTCCAGC+AGG | 0.514676 | 4_4:-59509815 | None:intergenic |
| ATACAAATTGTCCCCATGCT+TGG | 0.533187 | 4_4:+59510512 | Msa0691410:CDS |
| TCGTCAGGAGTAAGCAAAGA+TGG | 0.536008 | 4_4:+59510324 | Msa0691410:intron |
| GTACATTCAGATCACGAAGA+TGG | 0.550660 | 4_4:+59510414 | Msa0691410:CDS |
| CCTGTTGTGTATGCCTTGGA+TGG | 0.554703 | 4_4:-59510372 | None:intergenic |
| TAAGCAAAGATGGACTGATC+CGG | 0.555500 | 4_4:+59510334 | Msa0691410:CDS |
| TTTCTTTCACCGACCATCCA+AGG | 0.556473 | 4_4:+59510359 | Msa0691410:CDS |
| TTGTGTATGCCTTGGATGGT+CGG | 0.563263 | 4_4:-59510368 | None:intergenic |
| TTCTAAGTTGAATATGTCAC+AGG | 0.565283 | 4_4:+59510488 | Msa0691410:CDS |
| ATGGTCGGTGAAAGAAATGC+CGG | 0.591162 | 4_4:-59510353 | None:intergenic |
| AAGATGGAAGCGAAACCTGT+TGG | 0.629290 | 4_4:+59510430 | Msa0691410:CDS |
| GTTAGTCTTTACCAAGCATG+GGG | 0.650015 | 4_4:-59510523 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAGATAATTAAAGATATTAA+CGG | - | chr4_4:59507558-59507577 | None:intergenic | 10.0% |
| !! | TATATATTAGTTAAAAGTTA+TGG | + | chr4_4:59507661-59507680 | Msa0691410:intron | 10.0% |
| !! | GGTTTAATAAATCAATTTAA+AGG | - | chr4_4:59506777-59506796 | None:intergenic | 15.0% |
| !!! | GAATATAAAAATGCTATTTA+AGG | + | chr4_4:59507051-59507070 | Msa0691410:intron | 15.0% |
| !! | TGAAATATTCATACATTATT+AGG | - | chr4_4:59509761-59509780 | None:intergenic | 15.0% |
| !! | TAATGTATGAATATTTCATT+AGG | + | chr4_4:59509763-59509782 | Msa0691410:intron | 15.0% |
| !! | AATGTATGAATATTTCATTA+GGG | + | chr4_4:59509764-59509783 | Msa0691410:intron | 15.0% |
| !! | ATATAGATAAATAAGAAGTT+AGG | - | chr4_4:59510210-59510229 | None:intergenic | 15.0% |
| !!! | ATATTTCTACAATTTAGCAT+TGG | - | chr4_4:59506536-59506555 | None:intergenic | 20.0% |
| !! | CTAAATTGTAGAAATATACT+TGG | + | chr4_4:59506539-59506558 | Msa0691410:intron | 20.0% |
| !!! | ACTCAATTGAATTTTTTTGA+AGG | - | chr4_4:59506669-59506688 | None:intergenic | 20.0% |
| !! | TTAAACCATAAATTGTATGT+TGG | + | chr4_4:59506790-59506809 | Msa0691410:intron | 20.0% |
| !! | AAAAACTATTACACTATGTT+TGG | - | chr4_4:59506991-59507010 | None:intergenic | 20.0% |
| !!! | TCATATTATAGAGTTTTGTT+GGG | - | chr4_4:59508044-59508063 | None:intergenic | 20.0% |
| !!! | TTCATATTATAGAGTTTTGT+TGG | - | chr4_4:59508045-59508064 | None:intergenic | 20.0% |
| !!! | GTAAATTTTCATCAAAGAAA+AGG | - | chr4_4:59509017-59509036 | None:intergenic | 20.0% |
| !! | TTGATGAAAATTTACTGTTT+AGG | + | chr4_4:59509022-59509041 | Msa0691410:intron | 20.0% |
| !! | TGATGAAAATTTACTGTTTA+GGG | + | chr4_4:59509023-59509042 | Msa0691410:intron | 20.0% |
| !! | GAAATTAAAGAAAATCATTG+TGG | - | chr4_4:59509467-59509486 | None:intergenic | 20.0% |
| !! | ATGTATGAATATTTCATTAG+GGG | + | chr4_4:59509765-59509784 | Msa0691410:intron | 20.0% |
| !! | ATTACTTATACAATACTCTT+CGG | + | chr4_4:59509983-59510002 | Msa0691410:intron | 20.0% |
| !!! | TTTTCTTGTTCAAAACATAA+GGG | - | chr4_4:59510025-59510044 | None:intergenic | 20.0% |
| !!! | TTTTTCTTGTTCAAAACATA+AGG | - | chr4_4:59510026-59510045 | None:intergenic | 20.0% |
| !!! | ATGTTTTGAACAAGAAAAAA+AGG | + | chr4_4:59510027-59510046 | Msa0691410:intron | 20.0% |
| !!! | TGTTTTGAACAAGAAAAAAA+GGG | + | chr4_4:59510028-59510047 | Msa0691410:intron | 20.0% |
| !! | GATATGTTATATTTGTCTAT+TGG | - | chr4_4:59510129-59510148 | None:intergenic | 20.0% |
| !!! | ACAAGGTTAGTTTATTTTTT+TGG | - | chr4_4:59510175-59510194 | None:intergenic | 20.0% |
| !! | TGCTATATAATGTTATCTTA+CGG | - | chr4_4:59510244-59510263 | None:intergenic | 20.0% |
| !!! | TTTTAATTCACTACTACATA+TGG | - | chr4_4:59510286-59510305 | None:intergenic | 20.0% |
| ! | TTACTCTTTAACACTATGTT+TGG | + | chr4_4:59506209-59506228 | Msa0691410:intron | 25.0% |
| ! | AATGTTGAATTTCTCTTGTT+TGG | + | chr4_4:59506282-59506301 | Msa0691410:intron | 25.0% |
| !!! | TGTTTGGTTTGAATAGAAAT+AGG | + | chr4_4:59506298-59506317 | Msa0691410:intron | 25.0% |
| !!! | GTTTGGTTTGAATAGAAATA+GGG | + | chr4_4:59506299-59506318 | Msa0691410:intron | 25.0% |
| !!! | TTTGGTTTGAATAGAAATAG+GGG | + | chr4_4:59506300-59506319 | Msa0691410:intron | 25.0% |
| ! | AAATTGTTGCACATAATCAA+GGG | - | chr4_4:59506427-59506446 | None:intergenic | 25.0% |
| ! | AAAATTGTTGCACATAATCA+AGG | - | chr4_4:59506428-59506447 | None:intergenic | 25.0% |
| ! | TAAAGCCAACATACAATTTA+TGG | - | chr4_4:59506798-59506817 | None:intergenic | 25.0% |
| !!! | ATAGTGTAATAGTTTTTTCC+TGG | + | chr4_4:59506994-59507013 | Msa0691410:intron | 25.0% |
| ! | TCTTGACCATTAAATCAAAT+CGG | - | chr4_4:59507170-59507189 | None:intergenic | 25.0% |
| !! | TAGTAATTTTCAATTTGGAG+AGG | - | chr4_4:59507386-59507405 | None:intergenic | 25.0% |
| !! | GGGAATAGTAATTTTCAATT+TGG | - | chr4_4:59507391-59507410 | None:intergenic | 25.0% |
| !!! | GACATGTATTTTGAAATAGA+GGG | - | chr4_4:59507496-59507515 | None:intergenic | 25.0% |
| !!! | GCTCTCGATTTTTTTTTTTT+TGG | + | chr4_4:59507842-59507861 | Msa0691410:intron | 25.0% |
| !!! | TTTTTTTGGTGTTAACCTTT+CGG | + | chr4_4:59507856-59507875 | Msa0691410:intron | 25.0% |
| ! | AGTTTATGTTCATGTATCAA+CGG | + | chr4_4:59508108-59508127 | Msa0691410:intron | 25.0% |
| ! | AGCAAAATGGATAATCAATA+AGG | + | chr4_4:59508269-59508288 | Msa0691410:intron | 25.0% |
| ! | GTATCCATCACTATAAATAA+GGG | - | chr4_4:59508313-59508332 | None:intergenic | 25.0% |
| ! | TGTATCCATCACTATAAATA+AGG | - | chr4_4:59508314-59508333 | None:intergenic | 25.0% |
| ! | TGATTATAGTAACTAAACCT+GGG | + | chr4_4:59508421-59508440 | Msa0691410:intron | 25.0% |
| ! | TCTTAATTGACGATGATATT+TGG | + | chr4_4:59508750-59508769 | Msa0691410:intron | 25.0% |
| ! | AAACATTTCTAATACATGCA+AGG | - | chr4_4:59508906-59508925 | None:intergenic | 25.0% |
| ! | GTATTAGAAATGTTTGTAGT+CGG | + | chr4_4:59508911-59508930 | Msa0691410:intron | 25.0% |
| !! | AAAATTTACTGTTTAGGGTA+TGG | + | chr4_4:59509028-59509047 | Msa0691410:intron | 25.0% |
| !!! | ATCTAACAACTTTTGGTTTA+GGG | - | chr4_4:59509074-59509093 | None:intergenic | 25.0% |
| !!! | TATCTAACAACTTTTGGTTT+AGG | - | chr4_4:59509075-59509094 | None:intergenic | 25.0% |
| ! | TAAACCAAAAGTTGTTAGAT+AGG | + | chr4_4:59509074-59509093 | Msa0691410:intron | 25.0% |
| ! | AAACCAAAAGTTGTTAGATA+GGG | + | chr4_4:59509075-59509094 | Msa0691410:intron | 25.0% |
| ! | TGAAAAACTTACTCAAAGTT+AGG | - | chr4_4:59509162-59509181 | None:intergenic | 25.0% |
| !!! | TAAACACCTTTTGAGAATAT+TGG | + | chr4_4:59509308-59509327 | Msa0691410:intron | 25.0% |
| ! | AATACACCAATATTCTCAAA+AGG | - | chr4_4:59509317-59509336 | None:intergenic | 25.0% |
| !! | GTTTAAGAGTTCCTTTTATA+AGG | + | chr4_4:59509574-59509593 | Msa0691410:intron | 25.0% |
| ! | TTCCAATAAAACAGAAGTTT+AGG | - | chr4_4:59509650-59509669 | None:intergenic | 25.0% |
| ! | TATATAATGTTATCTTACGG+AGG | - | chr4_4:59510241-59510260 | None:intergenic | 25.0% |
| ! | ACATTGAATTATATTTCGTC+AGG | + | chr4_4:59510309-59510328 | Msa0691410:intron | 25.0% |
| ! | AAGATGAGTCAATTTTTCTG+AGG | + | chr4_4:59506007-59506026 | Msa0691410:intron | 30.0% |
| ! | AGATGAGTCAATTTTTCTGA+GGG | + | chr4_4:59506008-59506027 | Msa0691410:intron | 30.0% |
| ! | TTCTGAGGGTAAATATATGT+TGG | + | chr4_4:59506022-59506041 | Msa0691410:intron | 30.0% |
| !!! | TTGTTTTGAGAACACTTCAT+TGG | + | chr4_4:59506046-59506065 | Msa0691410:intron | 30.0% |
| !! | AAAAGTGTCCTTCATCTAAA+TGG | - | chr4_4:59506141-59506160 | None:intergenic | 30.0% |
| TCTTTAACACTATGTTTGGT+AGG | + | chr4_4:59506213-59506232 | Msa0691410:intron | 30.0% | |
| CTTTAACACTATGTTTGGTA+GGG | + | chr4_4:59506214-59506233 | Msa0691410:intron | 30.0% | |
| TTTAACACTATGTTTGGTAG+GGG | + | chr4_4:59506215-59506234 | Msa0691410:intron | 30.0% | |
| CCAACAAAAAAAACTAGAAC+TGG | - | chr4_4:59506513-59506532 | None:intergenic | 30.0% | |
| !!! | CCAGTTCTAGTTTTTTTTGT+TGG | + | chr4_4:59506510-59506529 | Msa0691410:intron | 30.0% |
| !! | AGAAGAGTTGATGTATTGTT+TGG | - | chr4_4:59506896-59506915 | None:intergenic | 30.0% |
| CTATTACACTATGTTTGGTT+GGG | - | chr4_4:59506986-59507005 | None:intergenic | 30.0% | |
| ACTATTACACTATGTTTGGT+TGG | - | chr4_4:59506987-59507006 | None:intergenic | 30.0% | |
| !!! | GTAATAGTTTTTTCCTGGAA+TGG | + | chr4_4:59506999-59507018 | Msa0691410:intron | 30.0% |
| GTAATAATTCATTCCATTCC+AGG | - | chr4_4:59507015-59507034 | None:intergenic | 30.0% | |
| !!! | CGACATGTATTTTGAAATAG+AGG | - | chr4_4:59507497-59507516 | None:intergenic | 30.0% |
| !!! | TGACATGTATTTTGAAACAG+AGG | + | chr4_4:59507723-59507742 | Msa0691410:intron | 30.0% |
| !!! | GACATGTATTTTGAAACAGA+GGG | + | chr4_4:59507724-59507743 | Msa0691410:intron | 30.0% |
| ! | CATGTAAGATGTTGTTTGAT+TGG | - | chr4_4:59507803-59507822 | None:intergenic | 30.0% |
| AGAATCCAAGTTCAATTTCT+AGG | - | chr4_4:59507957-59507976 | None:intergenic | 30.0% | |
| ATGGTTAATGAGTTTCACAA+GGG | - | chr4_4:59507994-59508013 | None:intergenic | 30.0% | |
| AATGGTTAATGAGTTTCACA+AGG | - | chr4_4:59507995-59508014 | None:intergenic | 30.0% | |
| ! | ACCATTTGAGTTCAATTGTT+TGG | + | chr4_4:59508009-59508028 | Msa0691410:intron | 30.0% |
| ACCAAACAATTGAACTCAAA+TGG | - | chr4_4:59508013-59508032 | None:intergenic | 30.0% | |
| !!! | GTTAGCACTCATACTTTTTT+GGG | - | chr4_4:59508245-59508264 | None:intergenic | 30.0% |
| !!! | TGTTAGCACTCATACTTTTT+TGG | - | chr4_4:59508246-59508265 | None:intergenic | 30.0% |
| AGTGCTAACAAATAGCAAAA+TGG | + | chr4_4:59508256-59508275 | Msa0691410:intron | 30.0% | |
| TTCACTCATTTAATTGCTAC+TGG | + | chr4_4:59508361-59508380 | Msa0691410:intron | 30.0% | |
| GTGATTATAGTAACTAAACC+TGG | + | chr4_4:59508420-59508439 | Msa0691410:intron | 30.0% | |
| GATTATAGTAACTAAACCTG+GGG | + | chr4_4:59508422-59508441 | Msa0691410:intron | 30.0% | |
| GAAACTTATTTGAACCAGAT+AGG | - | chr4_4:59508461-59508480 | None:intergenic | 30.0% | |
| CAAATAAGTTTCCTGTCAAT+CGG | + | chr4_4:59508469-59508488 | Msa0691410:intron | 30.0% | |
| CTTAAAGCATAACCAACTTT+AGG | - | chr4_4:59508512-59508531 | None:intergenic | 30.0% | |
| ! | CTAAAGTTGGTTATGCTTTA+AGG | + | chr4_4:59508510-59508529 | Msa0691410:intron | 30.0% |
| GGCACTTTATTGATATACAA+TGG | + | chr4_4:59508546-59508565 | Msa0691410:intron | 30.0% | |
| !!! | GGTATTTTTAGAGATGATGT+AGG | + | chr4_4:59508623-59508642 | Msa0691410:intron | 30.0% |
| GTCAAGAAGACCTAATAAAT+AGG | - | chr4_4:59508726-59508745 | None:intergenic | 30.0% | |
| ! | CATGATACTTTTATCATTCC+AGG | - | chr4_4:59509116-59509135 | None:intergenic | 30.0% |
| ATGCTAATAATGCCAGATTT+AGG | + | chr4_4:59509247-59509266 | Msa0691410:intron | 30.0% | |
| !! | TTCTCAAAAGGTGTTTATAC+AGG | - | chr4_4:59509305-59509324 | None:intergenic | 30.0% |
| ! | CTTTAATTTCTACCAGTTGA+AGG | + | chr4_4:59509477-59509496 | Msa0691410:intron | 30.0% |
| AGACGATTATAAGCAAAACA+AGG | - | chr4_4:59509540-59509559 | None:intergenic | 30.0% | |
| TAAAAGGAACTCTTAAACGT+TGG | - | chr4_4:59509572-59509591 | None:intergenic | 30.0% | |
| AACACAAGCAACCTTATAAA+AGG | - | chr4_4:59509588-59509607 | None:intergenic | 30.0% | |
| ! | AGCCTAAACTTCTGTTTTAT+TGG | + | chr4_4:59509645-59509664 | Msa0691410:intron | 30.0% |
| ! | TCAAGAGATTCTTGAACTTT+TGG | + | chr4_4:59509844-59509863 | Msa0691410:CDS | 30.0% |
| !! | GCTATTTGTTGCTATTTCTT+TGG | - | chr4_4:59510090-59510109 | None:intergenic | 30.0% |
| AAACTAACCTTGTAGTTACA+TGG | + | chr4_4:59510182-59510201 | Msa0691410:intron | 30.0% | |
| AACTTAGAATTGTTGTAGAC+TGG | - | chr4_4:59510477-59510496 | None:intergenic | 30.0% | |
| ! | TTCTAAGTTGAATATGTCAC+AGG | + | chr4_4:59510488-59510507 | Msa0691410:CDS | 30.0% |
| AAGAAGAGCCATTTAGATGA+AGG | + | chr4_4:59506130-59506149 | Msa0691410:intron | 35.0% | |
| GACTCAATTGAATCAGTTCA+TGG | - | chr4_4:59506643-59506662 | None:intergenic | 35.0% | |
| !! | TGTATGTTGGCTTTAACTCA+AGG | + | chr4_4:59506803-59506822 | Msa0691410:intron | 35.0% |
| GAGTAAGAGAAGAAAGAAAG+AGG | - | chr4_4:59506929-59506948 | None:intergenic | 35.0% | |
| GACCATTAAATCAAATCGGA+CGG | - | chr4_4:59507166-59507185 | None:intergenic | 35.0% | |
| ACCATTGATATCACATCGAA+CGG | - | chr4_4:59507218-59507237 | None:intergenic | 35.0% | |
| !!! | TCATTGGCTTGTTTCGATTT+TGG | + | chr4_4:59507310-59507329 | Msa0691410:intron | 35.0% |
| !!! | CATTGGCTTGTTTCGATTTT+GGG | + | chr4_4:59507311-59507330 | Msa0691410:intron | 35.0% |
| !!! | TTCGATTTTGGGATCAATTC+AGG | + | chr4_4:59507322-59507341 | Msa0691410:intron | 35.0% |
| ATGCACCAATGCTATGAATA+GGG | - | chr4_4:59507359-59507378 | None:intergenic | 35.0% | |
| TATGCACCAATGCTATGAAT+AGG | - | chr4_4:59507360-59507379 | None:intergenic | 35.0% | |
| GTATATTGACATATGTGCAG+TGG | - | chr4_4:59507442-59507461 | None:intergenic | 35.0% | |
| TGTTAACCTTTCGGTTCTTA+GGG | + | chr4_4:59507865-59507884 | Msa0691410:intron | 35.0% | |
| TGTCACCTAGAAATTGAACT+TGG | + | chr4_4:59507949-59507968 | Msa0691410:intron | 35.0% | |
| !!! | ACTCATACTTTTTTGGGTGT+CGG | - | chr4_4:59508239-59508258 | None:intergenic | 35.0% |
| ! | AATCAATAAGGTGTTCGTAC+CGG | + | chr4_4:59508281-59508300 | Msa0691410:intron | 35.0% |
| CCACAATATCCATAACAATC+TGG | - | chr4_4:59508399-59508418 | None:intergenic | 35.0% | |
| CCAGATTGTTATGGATATTG+TGG | + | chr4_4:59508396-59508415 | Msa0691410:intron | 35.0% | |
| CATAGTAGCTATCCTAAAGT+TGG | + | chr4_4:59508497-59508516 | Msa0691410:intron | 35.0% | |
| CTAATAAATAGGTCAAGTCC+AGG | - | chr4_4:59508715-59508734 | None:intergenic | 35.0% | |
| CTGGACTTGACCTATTTATT+AGG | + | chr4_4:59508713-59508732 | Msa0691410:intron | 35.0% | |
| GCATGATCCAATTATCCTTT+AGG | - | chr4_4:59508779-59508798 | None:intergenic | 35.0% | |
| ATAATTGGATCATGCCTCTT+AGG | + | chr4_4:59508784-59508803 | Msa0691410:intron | 35.0% | |
| TGTTACATATTGCATGACCA+AGG | - | chr4_4:59508838-59508857 | None:intergenic | 35.0% | |
| ! | TTCATTCAAAGCATCATAGG+GGG | - | chr4_4:59508960-59508979 | None:intergenic | 35.0% |
| ! | CTTCATTCAAAGCATCATAG+GGG | - | chr4_4:59508961-59508980 | None:intergenic | 35.0% |
| ! | GCTTCATTCAAAGCATCATA+GGG | - | chr4_4:59508962-59508981 | None:intergenic | 35.0% |
| TGAAACACTTGTCTGATTCT+TGG | - | chr4_4:59508993-59509012 | None:intergenic | 35.0% | |
| ! | GATCCCTATCTAACAACTTT+TGG | - | chr4_4:59509081-59509100 | None:intergenic | 35.0% |
| TTGTTAGATAGGGATCTAAG+TGG | + | chr4_4:59509085-59509104 | Msa0691410:intron | 35.0% | |
| ! | TTGTCACCTTTTATGCCATT+AGG | + | chr4_4:59509182-59509201 | Msa0691410:intron | 35.0% |
| ! | TGTCACCTTTTATGCCATTA+GGG | + | chr4_4:59509183-59509202 | Msa0691410:intron | 35.0% |
| AAGATCCCTAATGGCATAAA+AGG | - | chr4_4:59509191-59509210 | None:intergenic | 35.0% | |
| TATGCCATTAGGGATCTTTA+AGG | + | chr4_4:59509193-59509212 | Msa0691410:intron | 35.0% | |
| ATGCCATTAGGGATCTTTAA+GGG | + | chr4_4:59509194-59509213 | Msa0691410:intron | 35.0% | |
| AATGCCAGATTTAGGAAAGT+AGG | + | chr4_4:59509255-59509274 | Msa0691410:intron | 35.0% | |
| ATGCCAGATTTAGGAAAGTA+GGG | + | chr4_4:59509256-59509275 | Msa0691410:intron | 35.0% | |
| ATTCCCTACTTTCCTAAATC+TGG | - | chr4_4:59509262-59509281 | None:intergenic | 35.0% | |
| !! | CAAAAGGTGTTTATACAGGT+AGG | - | chr4_4:59509301-59509320 | None:intergenic | 35.0% |
| ! | TTTCCCTTTTCTCCAGTTTA+AGG | + | chr4_4:59509340-59509359 | Msa0691410:intron | 35.0% |
| GTACCTTAAACTGGAGAAAA+GGG | - | chr4_4:59509346-59509365 | None:intergenic | 35.0% | |
| AGTACCTTAAACTGGAGAAA+AGG | - | chr4_4:59509347-59509366 | None:intergenic | 35.0% | |
| GACAAAGACCCAATTATTGA+GGG | - | chr4_4:59509401-59509420 | None:intergenic | 35.0% | |
| TGACAAAGACCCAATTATTG+AGG | - | chr4_4:59509402-59509421 | None:intergenic | 35.0% | |
| AAGAAAATCATTGTGGTGCA+AGG | - | chr4_4:59509460-59509479 | None:intergenic | 35.0% | |
| AATTTCTACCAGTTGAAGGT+CGG | + | chr4_4:59509481-59509500 | Msa0691410:intron | 35.0% | |
| TTGAGATTGTTCGCCATTTA+GGG | - | chr4_4:59509516-59509535 | None:intergenic | 35.0% | |
| ATTGAGATTGTTCGCCATTT+AGG | - | chr4_4:59509517-59509536 | None:intergenic | 35.0% | |
| TATTGGAATCTCACTCCTAA+AGG | + | chr4_4:59509662-59509681 | Msa0691410:intron | 35.0% | |
| ATTGGAATCTCACTCCTAAA+GGG | + | chr4_4:59509663-59509682 | Msa0691410:intron | 35.0% | |
| AAGACATACATGATCCCTTT+AGG | - | chr4_4:59509680-59509699 | None:intergenic | 35.0% | |
| TGAATATTTCATTAGGGGAG+TGG | + | chr4_4:59509770-59509789 | Msa0691410:intron | 35.0% | |
| TCAAGAATCTCTTGATCTGT+TGG | - | chr4_4:59509839-59509858 | None:intergenic | 35.0% | |
| !! | TCTTGAACTTTTGGAAGCAA+AGG | + | chr4_4:59509853-59509872 | Msa0691410:CDS | 35.0% |
| GGATGAACTTGTCAATTAGA+GGG | - | chr4_4:59509904-59509923 | None:intergenic | 35.0% | |
| TATTCTCTCCTTCAAGAGTT+GGG | - | chr4_4:59509925-59509944 | None:intergenic | 35.0% | |
| TTAGGTACCATGTAACTACA+AGG | - | chr4_4:59510192-59510211 | None:intergenic | 35.0% | |
| AGGAACAAGAAAAAGAAGCA+AGG | + | chr4_4:59510392-59510411 | Msa0691410:CDS | 35.0% | |
| !! | TGTTAGTCTTTACCAAGCAT+GGG | - | chr4_4:59510527-59510546 | None:intergenic | 35.0% |
| !! | ATGTTAGTCTTTACCAAGCA+TGG | - | chr4_4:59510528-59510547 | None:intergenic | 35.0% |
| TGTTTGGTAGGGGTGAAATA+AGG | + | chr4_4:59506225-59506244 | Msa0691410:intron | 40.0% | |
| GTTTGGTAGGGGTGAAATAA+GGG | + | chr4_4:59506226-59506245 | Msa0691410:intron | 40.0% | |
| GAGAGAGAGATATAAAGCGT+GGG | + | chr4_4:59506322-59506341 | Msa0691410:intron | 40.0% | |
| AGCTCTTTCTTCGCATCTTT+GGG | - | chr4_4:59506370-59506389 | None:intergenic | 40.0% | |
| TAGCTCTTTCTTCGCATCTT+TGG | - | chr4_4:59506371-59506390 | None:intergenic | 40.0% | |
| TGCGAAGAAAGAGCTAAGAA+AGG | + | chr4_4:59506375-59506394 | Msa0691410:intron | 40.0% | |
| TTGCACATAATCAAGGGCAA+AGG | - | chr4_4:59506421-59506440 | None:intergenic | 40.0% | |
| GAAGTTGTGAAGAGAGAAAG+AGG | - | chr4_4:59506959-59506978 | None:intergenic | 40.0% | |
| ACCGTTCGATGTGATATCAA+TGG | + | chr4_4:59507214-59507233 | Msa0691410:intron | 40.0% | |
| !!! | GCTCAACACTGCTTTTTCAT+TGG | + | chr4_4:59507294-59507313 | Msa0691410:intron | 40.0% |
| CTTGTCCCTATTCATAGCAT+TGG | + | chr4_4:59507351-59507370 | Msa0691410:intron | 40.0% | |
| !!! | GGCATGTATTTTGAAACGGA+GGG | - | chr4_4:59507411-59507430 | None:intergenic | 40.0% |
| CTCCGTTTCAAAATACATGC+CGG | + | chr4_4:59507410-59507429 | Msa0691410:intron | 40.0% | |
| !! | CTCCGGCATGTATTTTGAAA+CGG | - | chr4_4:59507415-59507434 | None:intergenic | 40.0% |
| GTGTTAACCTTTCGGTTCTT+AGG | + | chr4_4:59507864-59507883 | Msa0691410:intron | 40.0% | |
| GTTAACCTTTCGGTTCTTAG+GGG | + | chr4_4:59507866-59507885 | Msa0691410:intron | 40.0% | |
| CGACAAAACTCCAGATTACT+AGG | - | chr4_4:59507900-59507919 | None:intergenic | 40.0% | |
| !! | TAATCTGGAGTTTTGTCGTG+AGG | + | chr4_4:59507902-59507921 | Msa0691410:intron | 40.0% |
| ! | ATCAATAAGGTGTTCGTACC+GGG | + | chr4_4:59508282-59508301 | Msa0691410:intron | 40.0% |
| ! | GAGGCCCTTATTTATAGTGA+TGG | + | chr4_4:59508306-59508325 | Msa0691410:intron | 40.0% |
| GGATACAATGTGAAGCTCTT+CGG | + | chr4_4:59508327-59508346 | Msa0691410:intron | 40.0% | |
| ! | ATCCATAACAATCTGGAGTC+TGG | - | chr4_4:59508392-59508411 | None:intergenic | 40.0% |
| !! | GTTGGTTATGCTTTAAGGTG+TGG | + | chr4_4:59508515-59508534 | Msa0691410:intron | 40.0% |
| !! | CTTTAAGGTGTGGATCATGT+AGG | + | chr4_4:59508525-59508544 | Msa0691410:intron | 40.0% |
| AGAATCTTCCACAACATCTC+AGG | - | chr4_4:59508574-59508593 | None:intergenic | 40.0% | |
| ATTCTCTCATATGCCACACA+TGG | + | chr4_4:59508589-59508608 | Msa0691410:intron | 40.0% | |
| TATGTTGCAGTTGCACAATG+TGG | + | chr4_4:59508657-59508676 | Msa0691410:intron | 40.0% | |
| GATGATATTTGGCGACCTAA+AGG | + | chr4_4:59508761-59508780 | Msa0691410:intron | 40.0% | |
| TTGGCGACCTAAAGGATAAT+TGG | + | chr4_4:59508769-59508788 | Msa0691410:intron | 40.0% | |
| ATTGCATGACCAAGGAACTA+GGG | - | chr4_4:59508830-59508849 | None:intergenic | 40.0% | |
| TATTGCATGACCAAGGAACT+AGG | - | chr4_4:59508831-59508850 | None:intergenic | 40.0% | |
| ! | GGCTTCATTCAAAGCATCAT+AGG | - | chr4_4:59508963-59508982 | None:intergenic | 40.0% |
| AACACTTGTCTGATTCTTGG+AGG | - | chr4_4:59508990-59509009 | None:intergenic | 40.0% | |
| CAAAGTTAGGTCAATGCAAG+AGG | - | chr4_4:59509149-59509168 | None:intergenic | 40.0% | |
| CAACCCTTAAAGATCCCTAA+TGG | - | chr4_4:59509200-59509219 | None:intergenic | 40.0% | |
| ! | CATTAGGGATCTTTAAGGGT+TGG | + | chr4_4:59509198-59509217 | Msa0691410:intron | 40.0% |
| ! | TCTCCAGTTTAAGGTACTCT+TGG | + | chr4_4:59509349-59509368 | Msa0691410:intron | 40.0% |
| !! | CAACCAAGAGTACCTTAAAC+TGG | - | chr4_4:59509355-59509374 | None:intergenic | 40.0% |
| TCACCTTCACCCTCAATAAT+TGG | + | chr4_4:59509389-59509408 | Msa0691410:intron | 40.0% | |
| CACCTTCACCCTCAATAATT+GGG | + | chr4_4:59509390-59509409 | Msa0691410:intron | 40.0% | |
| ATTTCTACCAGTTGAAGGTC+GGG | + | chr4_4:59509482-59509501 | Msa0691410:intron | 40.0% | |
| CAGAAGTTTAGGCTCATTGA+TGG | - | chr4_4:59509639-59509658 | None:intergenic | 40.0% | |
| ! | AGTGGAATTAATGACTTGCC+TGG | + | chr4_4:59509788-59509807 | Msa0691410:CDS | 40.0% |
| !! | AACTTTTGGAAGCAAAGGTG+AGG | + | chr4_4:59509858-59509877 | Msa0691410:intron | 40.0% |
| GGGATGAACTTGTCAATTAG+AGG | - | chr4_4:59509905-59509924 | None:intergenic | 40.0% | |
| AAGTTCATCCCAACTCTTGA+AGG | + | chr4_4:59509914-59509933 | Msa0691410:intron | 40.0% | |
| CTATTCTCTCCTTCAAGAGT+TGG | - | chr4_4:59509926-59509945 | None:intergenic | 40.0% | |
| !! | TAAGCAAAGATGGACTGATC+CGG | + | chr4_4:59510334-59510353 | Msa0691410:CDS | 40.0% |
| GTACATTCAGATCACGAAGA+TGG | + | chr4_4:59510414-59510433 | Msa0691410:CDS | 40.0% | |
| ! | TTTACCTGTTTTGTGCCAAC+AGG | - | chr4_4:59510448-59510467 | None:intergenic | 40.0% |
| ATACAAATTGTCCCCATGCT+TGG | + | chr4_4:59510512-59510531 | Msa0691410:CDS | 40.0% | |
| !! | GTTAGTCTTTACCAAGCATG+GGG | - | chr4_4:59510526-59510545 | None:intergenic | 40.0% |
| GGAGAGAGAGATATAAAGCG+TGG | + | chr4_4:59506321-59506340 | Msa0691410:intron | 45.0% | |
| GGGGAGAAGAATAAAGTGTG+TGG | - | chr4_4:59506350-59506369 | None:intergenic | 45.0% | |
| GCTCTTTCTTCGCATCTTTG+GGG | - | chr4_4:59506369-59506388 | None:intergenic | 45.0% | |
| CACATAATCAAGGGCAAAGG+TGG | - | chr4_4:59506418-59506437 | None:intergenic | 45.0% | |
| ! | GTCGATGCAAGGTACTAAGT+AGG | - | chr4_4:59506487-59506506 | None:intergenic | 45.0% |
| AGAACTGGAAAGTCGATGCA+AGG | - | chr4_4:59506498-59506517 | None:intergenic | 45.0% | |
| ! | GGCCGTCCGATTTGATTTAA+TGG | + | chr4_4:59507161-59507180 | Msa0691410:intron | 45.0% |
| GTGTTGAGCAGATGTGGATT+TGG | - | chr4_4:59507283-59507302 | None:intergenic | 45.0% | |
| ! | AAAGCAGTGTTGAGCAGATG+TGG | - | chr4_4:59507289-59507308 | None:intergenic | 45.0% |
| !!! | CGGCATGTATTTTGAAACGG+AGG | - | chr4_4:59507412-59507431 | None:intergenic | 45.0% |
| ! | ATATGTGCAGTGGTTGACTC+CGG | - | chr4_4:59507432-59507451 | None:intergenic | 45.0% |
| TCTTTCCCCTAAGAACCGAA+AGG | - | chr4_4:59507874-59507893 | None:intergenic | 45.0% | |
| TTTCGGTTCTTAGGGGAAAG+AGG | + | chr4_4:59507873-59507892 | Msa0691410:intron | 45.0% | |
| GGAAAGAGGTCCTAGTAATC+TGG | + | chr4_4:59507887-59507906 | Msa0691410:intron | 45.0% | |
| !! | TGGAGTTTTGTCGTGAGGTA+AGG | + | chr4_4:59507907-59507926 | Msa0691410:intron | 45.0% |
| TTCACAAGGGACGAATCGTT+CGG | - | chr4_4:59507981-59508000 | None:intergenic | 45.0% | |
| ! | TCAATAAGGTGTTCGTACCG+GGG | + | chr4_4:59508283-59508302 | Msa0691410:intron | 45.0% |
| GTCCAGACTCCAGATTGTTA+TGG | + | chr4_4:59508387-59508406 | Msa0691410:intron | 45.0% | |
| CTAAACCTGGGGATAAGCAA+TGG | + | chr4_4:59508433-59508452 | Msa0691410:intron | 45.0% | |
| ACTATGTCGTTCCGATTGAC+AGG | - | chr4_4:59508483-59508502 | None:intergenic | 45.0% | |
| CAATGGTTCCTGAGATGTTG+TGG | + | chr4_4:59508563-59508582 | Msa0691410:intron | 45.0% | |
| CCTTGTATCTGTACCATGTG+TGG | - | chr4_4:59508605-59508624 | None:intergenic | 45.0% | |
| CCACACATGGTACAGATACA+AGG | + | chr4_4:59508602-59508621 | Msa0691410:intron | 45.0% | |
| AATGTGGATGTGGTCTGATG+AGG | + | chr4_4:59508673-59508692 | Msa0691410:intron | 45.0% | |
| TGTAATGGTTCGAGCCTAAG+AGG | - | chr4_4:59508801-59508820 | None:intergenic | 45.0% | |
| ! | GAACTAGGGTGCTAGTGTAA+TGG | - | chr4_4:59508816-59508835 | None:intergenic | 45.0% |
| TAGTCGGAAACAATGCTCTC+AGG | + | chr4_4:59508927-59508946 | Msa0691410:intron | 45.0% | |
| TGTCTGATTCTTGGAGGACA+TGG | - | chr4_4:59508984-59509003 | None:intergenic | 45.0% | |
| GACCCAATTATTGAGGGTGA+AGG | - | chr4_4:59509395-59509414 | None:intergenic | 45.0% | |
| TCGTCAGGAGTAAGCAAAGA+TGG | + | chr4_4:59510324-59510343 | Msa0691410:intron | 45.0% | |
| ATGGTCGGTGAAAGAAATGC+CGG | - | chr4_4:59510356-59510375 | None:intergenic | 45.0% | |
| TTTCTTTCACCGACCATCCA+AGG | + | chr4_4:59510359-59510378 | Msa0691410:CDS | 45.0% | |
| TTGTGTATGCCTTGGATGGT+CGG | - | chr4_4:59510371-59510390 | None:intergenic | 45.0% | |
| TGTTCCTGTTGTGTATGCCT+TGG | - | chr4_4:59510379-59510398 | None:intergenic | 45.0% | |
| AAGATGGAAGCGAAACCTGT+TGG | + | chr4_4:59510430-59510449 | Msa0691410:CDS | 45.0% | |
| GAAACCTGTTGGCACAAAAC+AGG | + | chr4_4:59510441-59510460 | Msa0691410:CDS | 45.0% | |
| ATATTCCTCGCGATGAGCGT+GGG | - | chr4_4:59507037-59507056 | None:intergenic | 50.0% | |
| TATATTCCTCGCGATGAGCG+TGG | - | chr4_4:59507038-59507057 | None:intergenic | 50.0% | |
| CAGGACGCTGTAACAGATCA+GGG | + | chr4_4:59507140-59507159 | Msa0691410:intron | 50.0% | |
| TGAGCGTGTTCCTCCTTTGT+CGG | + | chr4_4:59508151-59508170 | Msa0691410:intron | 50.0% | |
| GTTCTAGTCACCGACAAAGG+AGG | - | chr4_4:59508164-59508183 | None:intergenic | 50.0% | |
| !! | GTGGTTCTAGTCACCGACAA+AGG | - | chr4_4:59508167-59508186 | None:intergenic | 50.0% |
| ATACGCTCCGTCTCCAAAAG+AGG | + | chr4_4:59508192-59508211 | Msa0691410:intron | 50.0% | |
| TACGCTCCGTCTCCAAAAGA+GGG | + | chr4_4:59508193-59508212 | Msa0691410:intron | 50.0% | |
| ! | TTTAACCCCCACCCCTCTTT+TGG | - | chr4_4:59508208-59508227 | None:intergenic | 50.0% |
| ! | CAATAAGGTGTTCGTACCGG+GGG | + | chr4_4:59508284-59508303 | Msa0691410:intron | 50.0% |
| CTATAAATAAGGGCCTCCCC+CGG | - | chr4_4:59508303-59508322 | None:intergenic | 50.0% | |
| GATAAGCAATGGCGCCTATC+TGG | + | chr4_4:59508444-59508463 | Msa0691410:intron | 50.0% | |
| GCAGTTGCACAATGTGGATG+TGG | + | chr4_4:59508663-59508682 | Msa0691410:intron | 50.0% | |
| ! | GTCTGATGAGGTACTCACCT+TGG | + | chr4_4:59508685-59508704 | Msa0691410:intron | 50.0% |
| ! | TGATGAGGTACTCACCTTGG+TGG | + | chr4_4:59508688-59508707 | Msa0691410:intron | 50.0% |
| ACACTAGCACCCTAGTTCCT+TGG | + | chr4_4:59508818-59508837 | Msa0691410:intron | 50.0% | |
| TCGGGAGTCAAGTCCCTAAA+TGG | + | chr4_4:59509500-59509519 | Msa0691410:intron | 50.0% | |
| GGATCAAACTTCACTCCAGC+AGG | - | chr4_4:59509818-59509837 | None:intergenic | 50.0% | |
| CCTGTTGTGTATGCCTTGGA+TGG | - | chr4_4:59510375-59510394 | None:intergenic | 50.0% | |
| CCATCCAAGGCATACACAAC+AGG | + | chr4_4:59510372-59510391 | Msa0691410:CDS | 50.0% | |
| TATTACCCACGCTCATCGCG+AGG | + | chr4_4:59507029-59507048 | Msa0691410:intron | 55.0% | |
| GGGAGGTGGGGACAAAAACA+TGG | - | chr4_4:59507093-59507112 | None:intergenic | 55.0% | |
| ! | TTTTTGTCCCCACCTCCCCT+CGG | + | chr4_4:59507095-59507114 | Msa0691410:intron | 55.0% |
| AATCCATACCGAGGGGAGGT+GGG | - | chr4_4:59507106-59507125 | None:intergenic | 55.0% | |
| AAATCCATACCGAGGGGAGG+TGG | - | chr4_4:59507107-59507126 | None:intergenic | 55.0% | |
| AGGAAATCCATACCGAGGGG+AGG | - | chr4_4:59507110-59507129 | None:intergenic | 55.0% | |
| CGCAGGAAATCCATACCGAG+GGG | - | chr4_4:59507113-59507132 | None:intergenic | 55.0% | |
| CCGCAGGAAATCCATACCGA+GGG | - | chr4_4:59507114-59507133 | None:intergenic | 55.0% | |
| CCCTCGGTATGGATTTCCTG+CGG | + | chr4_4:59507111-59507130 | Msa0691410:intron | 55.0% | |
| ACCGCAGGAAATCCATACCG+AGG | - | chr4_4:59507115-59507134 | None:intergenic | 55.0% | |
| GGATTTCCTGCGGTTACAGC+AGG | + | chr4_4:59507121-59507140 | Msa0691410:intron | 55.0% | |
| GCAGGACGCTGTAACAGATC+AGG | + | chr4_4:59507139-59507158 | Msa0691410:intron | 55.0% | |
| GAGACGGAGCGTATGATCAG+TGG | - | chr4_4:59508186-59508205 | None:intergenic | 55.0% | |
| ACGCTCCGTCTCCAAAAGAG+GGG | + | chr4_4:59508194-59508213 | Msa0691410:intron | 55.0% | |
| TCCGTCTCCAAAAGAGGGGT+GGG | + | chr4_4:59508198-59508217 | Msa0691410:intron | 55.0% | |
| GGGATCTAAGTGGCTACTCC+TGG | + | chr4_4:59509095-59509114 | Msa0691410:intron | 55.0% | |
| CTTGACTCCCGACCTTCAAC+TGG | - | chr4_4:59509492-59509511 | None:intergenic | 55.0% | |
| TTCACTCCAGCAGGCAATCC+AGG | - | chr4_4:59509809-59509828 | None:intergenic | 55.0% | |
| ATCCATACCGAGGGGAGGTG+GGG | - | chr4_4:59507105-59507124 | None:intergenic | 60.0% | |
| CTCCGTCTCCAAAAGAGGGG+TGG | + | chr4_4:59508197-59508216 | Msa0691410:intron | 60.0% | |
| !! | CCCCACCCCTCTTTTGGAGA+CGG | - | chr4_4:59508202-59508221 | None:intergenic | 60.0% |
| CCGTCTCCAAAAGAGGGGTG+GGG | + | chr4_4:59508199-59508218 | Msa0691410:intron | 60.0% | |
| CGTCTCCAAAAGAGGGGTGG+GGG | + | chr4_4:59508200-59508219 | Msa0691410:intron | 60.0% | |
| ! | TAAGGTGTTCGTACCGGGGG+AGG | + | chr4_4:59508287-59508306 | Msa0691410:intron | 60.0% |
| AGGCGCCATTGCTTATCCCC+AGG | - | chr4_4:59508441-59508460 | None:intergenic | 60.0% | |
| ! | GGTACTCACCTTGGTGGACC+TGG | + | chr4_4:59508694-59508713 | Msa0691410:intron | 60.0% |
| GGTCAAGTCCAGGTCCACCA+AGG | - | chr4_4:59508705-59508724 | None:intergenic | 60.0% | |
| GACTTGCCTGGATTGCCTGC+TGG | + | chr4_4:59509800-59509819 | Msa0691410:CDS | 60.0% | |
| CAGCGTCCTGCTGTAACCGC+AGG | - | chr4_4:59507130-59507149 | None:intergenic | 65.0% | |
| GTCCCCACCTCCCCTCGGTA+TGG | + | chr4_4:59507100-59507119 | Msa0691410:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 59505992 | 59510551 | 59505992 | ID=Msa0691410;Name=Msa0691410 |
| chr4_4 | mRNA | 59505992 | 59510551 | 59505992 | ID=Msa0691410-mRNA-1;Parent=Msa0691410;Name=Msa0691410-mRNA-1;_AED=0.53;_eAED=0.53;_QI=0|0|0|0.4|0.25|0.6|5|0|109 |
| chr4_4 | exon | 59505992 | 59505997 | 59505992 | ID=Msa0691410-mRNA-1:exon:16193;Parent=Msa0691410-mRNA-1 |
| chr4_4 | exon | 59509356 | 59509361 | 59509356 | ID=Msa0691410-mRNA-1:exon:16194;Parent=Msa0691410-mRNA-1 |
| chr4_4 | exon | 59509785 | 59509874 | 59509785 | ID=Msa0691410-mRNA-1:exon:16195;Parent=Msa0691410-mRNA-1 |
| chr4_4 | exon | 59510236 | 59510242 | 59510236 | ID=Msa0691410-mRNA-1:exon:16196;Parent=Msa0691410-mRNA-1 |
| chr4_4 | exon | 59510331 | 59510551 | 59510331 | ID=Msa0691410-mRNA-1:exon:16197;Parent=Msa0691410-mRNA-1 |
| chr4_4 | CDS | 59505992 | 59505997 | 59505992 | ID=Msa0691410-mRNA-1:cds;Parent=Msa0691410-mRNA-1 |
| chr4_4 | CDS | 59509356 | 59509361 | 59509356 | ID=Msa0691410-mRNA-1:cds;Parent=Msa0691410-mRNA-1 |
| chr4_4 | CDS | 59509785 | 59509874 | 59509785 | ID=Msa0691410-mRNA-1:cds;Parent=Msa0691410-mRNA-1 |
| chr4_4 | CDS | 59510236 | 59510242 | 59510236 | ID=Msa0691410-mRNA-1:cds;Parent=Msa0691410-mRNA-1 |
| chr4_4 | CDS | 59510331 | 59510551 | 59510331 | ID=Msa0691410-mRNA-1:cds;Parent=Msa0691410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
