Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0691560 | XP_003624868.1 | 94.531 | 128 | 7 | 0 | 3 | 130 | 2 | 129 | 4.27e-85 | 257 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0691560 | sp|Q9XI05|PSB3A_ARATH | 90.625 | 128 | 12 | 0 | 3 | 130 | 2 | 129 | 5.02e-84 | 247 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0691560 | G7L4S2 | 94.531 | 128 | 7 | 0 | 3 | 130 | 2 | 129 | 2.04e-85 | 257 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0563470 | Msa0691560 | 0.955556 | 2.308527e-113 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0691560 | MtrunA17_Chr7g0255251 | 94.531 | 128 | 7 | 0 | 3 | 130 | 2 | 129 | 3.93e-89 | 257 |
| Msa0691560 | MtrunA17_Chr4g0045861 | 94.531 | 128 | 7 | 0 | 3 | 130 | 2 | 129 | 9.85e-88 | 253 |
| Msa0691560 | MtrunA17_Chr5g0435161 | 33.065 | 124 | 83 | 0 | 6 | 129 | 12 | 135 | 1.91e-17 | 75.1 |
| Msa0691560 | MtrunA17_Chr2g0328831 | 33.065 | 124 | 83 | 0 | 6 | 129 | 12 | 135 | 2.02e-17 | 75.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0691560 | AT1G21720.1 | 90.625 | 128 | 12 | 0 | 3 | 130 | 2 | 129 | 5.11e-85 | 247 |
| Msa0691560 | AT1G77440.2 | 89.844 | 128 | 13 | 0 | 3 | 130 | 2 | 129 | 7.08e-84 | 244 |
| Msa0691560 | AT1G77440.1 | 89.844 | 128 | 13 | 0 | 3 | 130 | 2 | 129 | 7.08e-84 | 244 |
| Msa0691560 | AT3G60820.2 | 33.065 | 124 | 83 | 0 | 6 | 129 | 12 | 135 | 8.67e-18 | 76.3 |
| Msa0691560 | AT3G60820.1 | 33.065 | 124 | 83 | 0 | 6 | 129 | 12 | 135 | 9.04e-18 | 76.3 |
| Msa0691560 | AT3G60820.3 | 33.065 | 124 | 83 | 0 | 6 | 129 | 12 | 135 | 9.04e-18 | 76.3 |
Find 34 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACTCTTCATCGGTCTTTC+TGG | 0.122403 | 4_4:-59736807 | Msa0691560:CDS |
| GAAGAGTTTATCATGAATTT+TGG | 0.140707 | 4_4:+59736821 | None:intergenic |
| ACCCTAATCTTCAATTTCTA+TGG | 0.191502 | 4_4:+59737022 | None:intergenic |
| CAGCCTGTAATTGCTGGATT+AGG | 0.273487 | 4_4:-59735558 | Msa0691560:CDS |
| CCCCATAGAAATTGAAGATT+AGG | 0.293366 | 4_4:-59737024 | Msa0691560:five_prime_UTR |
| AGCCTGTAATTGCTGGATTA+GGG | 0.310212 | 4_4:-59735557 | Msa0691560:CDS |
| CCCATAGAAATTGAAGATTA+GGG | 0.332722 | 4_4:-59737023 | Msa0691560:five_prime_UTR |
| TCCCCTAATCCAGCAATTAC+AGG | 0.353996 | 4_4:+59735555 | None:intergenic |
| ATTACAGGCTGGCAAAAGTA+TGG | 0.375854 | 4_4:+59735570 | None:intergenic |
| TTTGGAAATTCTTTGGAAAT+CGG | 0.398276 | 4_4:+59736839 | None:intergenic |
| CCCTAATCTTCAATTTCTAT+GGG | 0.421031 | 4_4:+59737023 | None:intergenic |
| GCGTCCATTGTGCAAATGAA+TGG | 0.449188 | 4_4:+59735522 | None:intergenic |
| TAGTTACAGTGTTTGAGAAT+CGG | 0.451438 | 4_4:+59736776 | None:intergenic |
| ATTTGCACAATGGACGCGAT+TGG | 0.488319 | 4_4:-59735516 | Msa0691560:CDS |
| TCTTTGGAAATCGGTAGCTA+TGG | 0.498667 | 4_4:+59736848 | None:intergenic |
| TGAAGAACGTGATATGAAAC+CGG | 0.514373 | 4_4:-59736627 | Msa0691560:CDS |
| CTGCTATGCAATACGAGAAA+CGG | 0.517535 | 4_4:-59736583 | Msa0691560:intron |
| AACACCGAGTCTTCGATCGC+TGG | 0.522918 | 4_4:+59736881 | None:intergenic |
| ATTCATGATAAACTCTTCAT+CGG | 0.530804 | 4_4:-59736816 | Msa0691560:CDS |
| CTTGCCAGCCATGGCTACTA+CGG | 0.541713 | 4_4:+59736920 | None:intergenic |
| AGTGCCGTAGTAGCCATGGC+TGG | 0.553904 | 4_4:-59736924 | Msa0691560:CDS |
| TCTATGGGGCTTTAAGTCGA+AGG | 0.561475 | 4_4:+59737038 | None:intergenic |
| ACCAAACTAGCAAAAGTCTC+CGG | 0.563099 | 4_4:+59736608 | None:intergenic |
| CAAACCATTCATTTGCACAA+TGG | 0.566818 | 4_4:-59735526 | Msa0691560:CDS |
| GAGTCTTCGATCGCTGGCAA+TGG | 0.571455 | 4_4:+59736887 | None:intergenic |
| CGGAAGTGCCGTAGTAGCCA+TGG | 0.574000 | 4_4:-59736928 | Msa0691560:CDS |
| GCCTGTAATTGCTGGATTAG+GGG | 0.580864 | 4_4:-59735556 | Msa0691560:CDS |
| GAAACAATTCTTGCCAGCCA+TGG | 0.591960 | 4_4:+59736911 | None:intergenic |
| TTACAGTGTTTGAGAATCGG+TGG | 0.592428 | 4_4:+59736779 | None:intergenic |
| GTAATCTAAAATCGTCGACA+TGG | 0.602064 | 4_4:+59736953 | None:intergenic |
| ATTGCCAGCGATCGAAGACT+CGG | 0.602697 | 4_4:-59736885 | Msa0691560:CDS |
| CTAATCCAGCAATTACAGGC+TGG | 0.603284 | 4_4:+59735559 | None:intergenic |
| CCTAATCTTCAATTTCTATG+GGG | 0.606920 | 4_4:+59737024 | None:intergenic |
| TAATCTAAAATCGTCGACAT+GGG | 0.640528 | 4_4:+59736954 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTGTGATTGA+AGG | - | chr4_4:59735844-59735863 | Msa0691560:intron | 15.0% |
| !!! | TTTTTTTTTTTTGTGATTGA+AGG | - | chr4_4:59735844-59735863 | Msa0691560:intron | 15.0% |
| !!! | TTGAATGATTTGGTTTAATT+AGG | - | chr4_4:59736033-59736052 | Msa0691560:intron | 20.0% |
| !!! | TGAATGATTTGGTTTAATTA+GGG | - | chr4_4:59736034-59736053 | Msa0691560:intron | 20.0% |
| !! | TCATAAAATTGATCTAATCT+TGG | + | chr4_4:59736096-59736115 | None:intergenic | 20.0% |
| !! | TATACAATGAAAATTATCGT+CGG | + | chr4_4:59736213-59736232 | None:intergenic | 20.0% |
| !!! | TATATTAGTTTTCGAAGTAA+AGG | - | chr4_4:59736229-59736248 | Msa0691560:intron | 20.0% |
| !!! | ATATTAGTTTTCGAAGTAAA+GGG | - | chr4_4:59736230-59736249 | Msa0691560:intron | 20.0% |
| !!! | AGTACATTTTAGTTCAATTA+AGG | - | chr4_4:59736511-59736530 | Msa0691560:intron | 20.0% |
| !! | TTTAAATTTCAACAAGTTAC+TGG | + | chr4_4:59736781-59736800 | None:intergenic | 20.0% |
| !!! | TTGAATGATTTGGTTTAATT+AGG | - | chr4_4:59736033-59736052 | Msa0691560:intron | 20.0% |
| !!! | TGAATGATTTGGTTTAATTA+GGG | - | chr4_4:59736034-59736053 | Msa0691560:intron | 20.0% |
| !! | TCATAAAATTGATCTAATCT+TGG | + | chr4_4:59736096-59736115 | None:intergenic | 20.0% |
| !! | TATACAATGAAAATTATCGT+CGG | + | chr4_4:59736213-59736232 | None:intergenic | 20.0% |
| !!! | TATATTAGTTTTCGAAGTAA+AGG | - | chr4_4:59736229-59736248 | Msa0691560:intron | 20.0% |
| !!! | ATATTAGTTTTCGAAGTAAA+GGG | - | chr4_4:59736230-59736249 | Msa0691560:intron | 20.0% |
| !!! | AGTACATTTTAGTTCAATTA+AGG | - | chr4_4:59736511-59736530 | Msa0691560:intron | 20.0% |
| !! | TTTAAATTTCAACAAGTTAC+TGG | + | chr4_4:59736781-59736800 | None:intergenic | 20.0% |
| !! | TTTGGAAATTCTTTGGAAAT+CGG | + | chr4_4:59735699-59735718 | None:intergenic | 25.0% |
| !!! | CATGAATTTTGGAAATTCTT+TGG | + | chr4_4:59735706-59735725 | None:intergenic | 25.0% |
| !! | GAAGAGTTTATCATGAATTT+TGG | + | chr4_4:59735717-59735736 | None:intergenic | 25.0% |
| ! | ATTCATGATAAACTCTTCAT+CGG | - | chr4_4:59735719-59735738 | Msa0691560:intron | 25.0% |
| !!! | TTTAGATCTGGATTTTGTTT+AGG | - | chr4_4:59735991-59736010 | Msa0691560:intron | 25.0% |
| !! | TGATTTGTGAATATTACAGA+TGG | - | chr4_4:59736069-59736088 | Msa0691560:intron | 25.0% |
| !!! | TTAACCTCGTTTTTAAATCT+TGG | - | chr4_4:59736382-59736401 | Msa0691560:intron | 25.0% |
| !!! | ACATTTTAGTTCAATTAAGG+AGG | - | chr4_4:59736514-59736533 | Msa0691560:intron | 25.0% |
| !! | GACAGAAAAATAGTACATTT+TGG | - | chr4_4:59736564-59736583 | Msa0691560:intron | 25.0% |
| ! | GAAATTGTTATGATGTAATC+AGG | + | chr4_4:59736846-59736865 | None:intergenic | 25.0% |
| !! | TATGCTTTCCTTTTCTTTTT+AGG | - | chr4_4:59736936-59736955 | Msa0691560:CDS | 25.0% |
| !!! | TTTCCTTTTCTTTTTAGGTT+CGG | - | chr4_4:59736941-59736960 | Msa0691560:CDS | 25.0% |
| !! | TTTGGAAATTCTTTGGAAAT+CGG | + | chr4_4:59735699-59735718 | None:intergenic | 25.0% |
| !!! | CATGAATTTTGGAAATTCTT+TGG | + | chr4_4:59735706-59735725 | None:intergenic | 25.0% |
| !! | GAAGAGTTTATCATGAATTT+TGG | + | chr4_4:59735717-59735736 | None:intergenic | 25.0% |
| ! | ATTCATGATAAACTCTTCAT+CGG | - | chr4_4:59735719-59735738 | Msa0691560:intron | 25.0% |
| !!! | TTTAGATCTGGATTTTGTTT+AGG | - | chr4_4:59735991-59736010 | Msa0691560:intron | 25.0% |
| !! | TGATTTGTGAATATTACAGA+TGG | - | chr4_4:59736069-59736088 | Msa0691560:intron | 25.0% |
| !!! | TTAACCTCGTTTTTAAATCT+TGG | - | chr4_4:59736382-59736401 | Msa0691560:intron | 25.0% |
| !!! | ACATTTTAGTTCAATTAAGG+AGG | - | chr4_4:59736514-59736533 | Msa0691560:intron | 25.0% |
| !! | GACAGAAAAATAGTACATTT+TGG | - | chr4_4:59736564-59736583 | Msa0691560:intron | 25.0% |
| ! | GAAATTGTTATGATGTAATC+AGG | + | chr4_4:59736846-59736865 | None:intergenic | 25.0% |
| !! | TATGCTTTCCTTTTCTTTTT+AGG | - | chr4_4:59736936-59736955 | Msa0691560:CDS | 25.0% |
| !!! | TTTCCTTTTCTTTTTAGGTT+CGG | - | chr4_4:59736941-59736960 | Msa0691560:CDS | 25.0% |
| CCTAATCTTCAATTTCTATG+GGG | + | chr4_4:59735514-59735533 | None:intergenic | 30.0% | |
| CCCTAATCTTCAATTTCTAT+GGG | + | chr4_4:59735515-59735534 | None:intergenic | 30.0% | |
| CCCATAGAAATTGAAGATTA+GGG | - | chr4_4:59735512-59735531 | Msa0691560:CDS | 30.0% | |
| ACCCTAATCTTCAATTTCTA+TGG | + | chr4_4:59735516-59735535 | None:intergenic | 30.0% | |
| ! | TAATCTAAAATCGTCGACAT+GGG | + | chr4_4:59735584-59735603 | None:intergenic | 30.0% |
| ! | TCGACGATTTTAGATTACAA+CGG | - | chr4_4:59735587-59735606 | Msa0691560:intron | 30.0% |
| TAGTTACAGTGTTTGAGAAT+CGG | + | chr4_4:59735762-59735781 | None:intergenic | 30.0% | |
| ! | TTCTGAATCGTTTTCTGTTT+TGG | - | chr4_4:59735804-59735823 | Msa0691560:intron | 30.0% |
| ! | TCTGAATCGTTTTCTGTTTT+GGG | - | chr4_4:59735805-59735824 | Msa0691560:intron | 30.0% |
| ! | GTGATTTTCTGATTTAGATC+TGG | - | chr4_4:59735979-59735998 | Msa0691560:intron | 30.0% |
| GTGATGTGAATTGAATGATT+TGG | - | chr4_4:59736023-59736042 | Msa0691560:intron | 30.0% | |
| TATCACACCAAGTTCTATTA+GGG | + | chr4_4:59736190-59736209 | None:intergenic | 30.0% | |
| ! | CAACCACATTATAAAGGTTT+TGG | - | chr4_4:59736274-59736293 | Msa0691560:intron | 30.0% |
| AGTCCAAAACCTTTATAATG+TGG | + | chr4_4:59736280-59736299 | None:intergenic | 30.0% | |
| !!! | TTTTAGTTCAATTAAGGAGG+TGG | - | chr4_4:59736517-59736536 | Msa0691560:intron | 30.0% |
| !!! | GTACATTTTGGTTCCAATTA+AGG | - | chr4_4:59736576-59736595 | Msa0691560:intron | 30.0% |
| GTTTGGATTTAGATAGCATT+TGG | + | chr4_4:59736665-59736684 | None:intergenic | 30.0% | |
| AAGAAACATAGCATTTCAGA+GGG | + | chr4_4:59736804-59736823 | None:intergenic | 30.0% | |
| ! | AATGCTATGTTTCTTCCTTT+TGG | - | chr4_4:59736809-59736828 | Msa0691560:CDS | 30.0% |
| CCTAATCTTCAATTTCTATG+GGG | + | chr4_4:59735514-59735533 | None:intergenic | 30.0% | |
| CCCTAATCTTCAATTTCTAT+GGG | + | chr4_4:59735515-59735534 | None:intergenic | 30.0% | |
| CCCATAGAAATTGAAGATTA+GGG | - | chr4_4:59735512-59735531 | Msa0691560:CDS | 30.0% | |
| ACCCTAATCTTCAATTTCTA+TGG | + | chr4_4:59735516-59735535 | None:intergenic | 30.0% | |
| ! | TAATCTAAAATCGTCGACAT+GGG | + | chr4_4:59735584-59735603 | None:intergenic | 30.0% |
| ! | TCGACGATTTTAGATTACAA+CGG | - | chr4_4:59735587-59735606 | Msa0691560:intron | 30.0% |
| TAGTTACAGTGTTTGAGAAT+CGG | + | chr4_4:59735762-59735781 | None:intergenic | 30.0% | |
| ! | TTCTGAATCGTTTTCTGTTT+TGG | - | chr4_4:59735804-59735823 | Msa0691560:intron | 30.0% |
| ! | TCTGAATCGTTTTCTGTTTT+GGG | - | chr4_4:59735805-59735824 | Msa0691560:intron | 30.0% |
| ! | GTGATTTTCTGATTTAGATC+TGG | - | chr4_4:59735979-59735998 | Msa0691560:intron | 30.0% |
| GTGATGTGAATTGAATGATT+TGG | - | chr4_4:59736023-59736042 | Msa0691560:intron | 30.0% | |
| TATCACACCAAGTTCTATTA+GGG | + | chr4_4:59736190-59736209 | None:intergenic | 30.0% | |
| ! | CAACCACATTATAAAGGTTT+TGG | - | chr4_4:59736274-59736293 | Msa0691560:intron | 30.0% |
| AGTCCAAAACCTTTATAATG+TGG | + | chr4_4:59736280-59736299 | None:intergenic | 30.0% | |
| !!! | TTTTAGTTCAATTAAGGAGG+TGG | - | chr4_4:59736517-59736536 | Msa0691560:intron | 30.0% |
| !!! | GTACATTTTGGTTCCAATTA+AGG | - | chr4_4:59736576-59736595 | Msa0691560:intron | 30.0% |
| GTTTGGATTTAGATAGCATT+TGG | + | chr4_4:59736665-59736684 | None:intergenic | 30.0% | |
| AAGAAACATAGCATTTCAGA+GGG | + | chr4_4:59736804-59736823 | None:intergenic | 30.0% | |
| ! | AATGCTATGTTTCTTCCTTT+TGG | - | chr4_4:59736809-59736828 | Msa0691560:CDS | 30.0% |
| CCCCATAGAAATTGAAGATT+AGG | - | chr4_4:59735511-59735530 | Msa0691560:CDS | 35.0% | |
| ! | GTAATCTAAAATCGTCGACA+TGG | + | chr4_4:59735585-59735604 | None:intergenic | 35.0% |
| TGAAGAACGTGATATGAAAC+CGG | - | chr4_4:59735908-59735927 | Msa0691560:intron | 35.0% | |
| GTATCACACCAAGTTCTATT+AGG | + | chr4_4:59736191-59736210 | None:intergenic | 35.0% | |
| ! | AGTTTTCGAAGTAAAGGGAT+TGG | - | chr4_4:59736235-59736254 | Msa0691560:intron | 35.0% |
| ! | GTTTTCGAAGTAAAGGGATT+GGG | - | chr4_4:59736236-59736255 | Msa0691560:intron | 35.0% |
| AGGTTGCAACCACATTATAA+AGG | - | chr4_4:59736268-59736287 | Msa0691560:intron | 35.0% | |
| TTCGCCAAGATTTAAAAACG+AGG | + | chr4_4:59736389-59736408 | None:intergenic | 35.0% | |
| GTAAAACAGAACTAGACATG+AGG | - | chr4_4:59736479-59736498 | Msa0691560:intron | 35.0% | |
| !!! | CATTTTGGTTCCAATTAAGG+AGG | - | chr4_4:59736579-59736598 | Msa0691560:intron | 35.0% |
| GAAGAAACATAGCATTTCAG+AGG | + | chr4_4:59736805-59736824 | None:intergenic | 35.0% | |
| CAGGTATGTAAACAACCAAA+AGG | + | chr4_4:59736827-59736846 | None:intergenic | 35.0% | |
| CAAACCATTCATTTGCACAA+TGG | - | chr4_4:59737009-59737028 | Msa0691560:five_prime_UTR | 35.0% | |
| CCCCATAGAAATTGAAGATT+AGG | - | chr4_4:59735511-59735530 | Msa0691560:CDS | 35.0% | |
| ! | GTAATCTAAAATCGTCGACA+TGG | + | chr4_4:59735585-59735604 | None:intergenic | 35.0% |
| TGAAGAACGTGATATGAAAC+CGG | - | chr4_4:59735908-59735927 | Msa0691560:intron | 35.0% | |
| GTATCACACCAAGTTCTATT+AGG | + | chr4_4:59736191-59736210 | None:intergenic | 35.0% | |
| ! | AGTTTTCGAAGTAAAGGGAT+TGG | - | chr4_4:59736235-59736254 | Msa0691560:intron | 35.0% |
| ! | GTTTTCGAAGTAAAGGGATT+GGG | - | chr4_4:59736236-59736255 | Msa0691560:intron | 35.0% |
| AGGTTGCAACCACATTATAA+AGG | - | chr4_4:59736268-59736287 | Msa0691560:intron | 35.0% | |
| TTCGCCAAGATTTAAAAACG+AGG | + | chr4_4:59736389-59736408 | None:intergenic | 35.0% | |
| GTAAAACAGAACTAGACATG+AGG | - | chr4_4:59736479-59736498 | Msa0691560:intron | 35.0% | |
| !!! | CATTTTGGTTCCAATTAAGG+AGG | - | chr4_4:59736579-59736598 | Msa0691560:intron | 35.0% |
| GAAGAAACATAGCATTTCAG+AGG | + | chr4_4:59736805-59736824 | None:intergenic | 35.0% | |
| CAGGTATGTAAACAACCAAA+AGG | + | chr4_4:59736827-59736846 | None:intergenic | 35.0% | |
| CAAACCATTCATTTGCACAA+TGG | - | chr4_4:59737009-59737028 | Msa0691560:five_prime_UTR | 35.0% | |
| ! | TCTTTGGAAATCGGTAGCTA+TGG | + | chr4_4:59735690-59735709 | None:intergenic | 40.0% |
| AAACTCTTCATCGGTCTTTC+TGG | - | chr4_4:59735728-59735747 | Msa0691560:intron | 40.0% | |
| TTACAGTGTTTGAGAATCGG+TGG | + | chr4_4:59735759-59735778 | None:intergenic | 40.0% | |
| ACCAAACTAGCAAAAGTCTC+CGG | + | chr4_4:59735930-59735949 | None:intergenic | 40.0% | |
| CTGCTATGCAATACGAGAAA+CGG | - | chr4_4:59735952-59735971 | Msa0691560:intron | 40.0% | |
| GACACAACCCTAATAGAACT+TGG | - | chr4_4:59736180-59736199 | Msa0691560:intron | 40.0% | |
| ! | AAGTAAAGGGATTGGGTTGT+TGG | - | chr4_4:59736243-59736262 | Msa0691560:intron | 40.0% |
| !!! | CCAAGTTGCGATTTTAACTG+CGG | - | chr4_4:59736309-59736328 | Msa0691560:intron | 40.0% |
| ! | GCGGCTTTATCTGCAATTTA+AGG | - | chr4_4:59736328-59736347 | Msa0691560:intron | 40.0% |
| AAGTGCATCAGGGTAGTATA+TGG | - | chr4_4:59736407-59736426 | Msa0691560:intron | 40.0% | |
| ! | TTTGGTTCCAATTAAGGAGG+TGG | - | chr4_4:59736582-59736601 | Msa0691560:intron | 40.0% |
| TTCCAATTAAGGAGGTGGAA+TGG | - | chr4_4:59736587-59736606 | Msa0691560:CDS | 40.0% | |
| TTCCATTCCACCTCCTTAAT+TGG | + | chr4_4:59736592-59736611 | None:intergenic | 40.0% | |
| CGATACACTACACAGTTGTT+TGG | + | chr4_4:59736682-59736701 | None:intergenic | 40.0% | |
| ! | ACTGTGTAGTGTATCGACAT+TGG | - | chr4_4:59736686-59736705 | Msa0691560:intron | 40.0% |
| GGACCGAACCTAAAAAGAAA+AGG | + | chr4_4:59736947-59736966 | None:intergenic | 40.0% | |
| ATTACAGGCTGGCAAAAGTA+TGG | + | chr4_4:59736968-59736987 | None:intergenic | 40.0% | |
| AGCCTGTAATTGCTGGATTA+GGG | - | chr4_4:59736978-59736997 | Msa0691560:five_prime_UTR | 40.0% | |
| ! | TCTTTGGAAATCGGTAGCTA+TGG | + | chr4_4:59735690-59735709 | None:intergenic | 40.0% |
| AAACTCTTCATCGGTCTTTC+TGG | - | chr4_4:59735728-59735747 | Msa0691560:intron | 40.0% | |
| TTACAGTGTTTGAGAATCGG+TGG | + | chr4_4:59735759-59735778 | None:intergenic | 40.0% | |
| ACCAAACTAGCAAAAGTCTC+CGG | + | chr4_4:59735930-59735949 | None:intergenic | 40.0% | |
| CTGCTATGCAATACGAGAAA+CGG | - | chr4_4:59735952-59735971 | Msa0691560:intron | 40.0% | |
| GACACAACCCTAATAGAACT+TGG | - | chr4_4:59736180-59736199 | Msa0691560:intron | 40.0% | |
| ! | AAGTAAAGGGATTGGGTTGT+TGG | - | chr4_4:59736243-59736262 | Msa0691560:intron | 40.0% |
| !!! | CCAAGTTGCGATTTTAACTG+CGG | - | chr4_4:59736309-59736328 | Msa0691560:intron | 40.0% |
| ! | GCGGCTTTATCTGCAATTTA+AGG | - | chr4_4:59736328-59736347 | Msa0691560:intron | 40.0% |
| AAGTGCATCAGGGTAGTATA+TGG | - | chr4_4:59736407-59736426 | Msa0691560:intron | 40.0% | |
| ! | TTTGGTTCCAATTAAGGAGG+TGG | - | chr4_4:59736582-59736601 | Msa0691560:intron | 40.0% |
| TTCCAATTAAGGAGGTGGAA+TGG | - | chr4_4:59736587-59736606 | Msa0691560:CDS | 40.0% | |
| TTCCATTCCACCTCCTTAAT+TGG | + | chr4_4:59736592-59736611 | None:intergenic | 40.0% | |
| CGATACACTACACAGTTGTT+TGG | + | chr4_4:59736682-59736701 | None:intergenic | 40.0% | |
| ! | ACTGTGTAGTGTATCGACAT+TGG | - | chr4_4:59736686-59736705 | Msa0691560:intron | 40.0% |
| GGACCGAACCTAAAAAGAAA+AGG | + | chr4_4:59736947-59736966 | None:intergenic | 40.0% | |
| ATTACAGGCTGGCAAAAGTA+TGG | + | chr4_4:59736968-59736987 | None:intergenic | 40.0% | |
| AGCCTGTAATTGCTGGATTA+GGG | - | chr4_4:59736978-59736997 | Msa0691560:five_prime_UTR | 40.0% | |
| GAAACAATTCTTGCCAGCCA+TGG | + | chr4_4:59735627-59735646 | None:intergenic | 45.0% | |
| ! | ACCGGAGACTTTTGCTAGTT+TGG | - | chr4_4:59735926-59735945 | Msa0691560:intron | 45.0% |
| ! | AAGGGATTGGGTTGTTGGTT+AGG | - | chr4_4:59736248-59736267 | Msa0691560:intron | 45.0% |
| AAATCGCAACTTGGTTGCAG+AGG | + | chr4_4:59736303-59736322 | None:intergenic | 45.0% | |
| CCGCAGTTAAAATCGCAACT+TGG | + | chr4_4:59736312-59736331 | None:intergenic | 45.0% | |
| AAATCTTGGCGAAGTGCATC+AGG | - | chr4_4:59736396-59736415 | Msa0691560:intron | 45.0% | |
| AATCTTGGCGAAGTGCATCA+GGG | - | chr4_4:59736397-59736416 | Msa0691560:intron | 45.0% | |
| GCATCAGGGTAGTATATGGT+AGG | - | chr4_4:59736411-59736430 | Msa0691560:intron | 45.0% | |
| TATCGACATTGGCGCATTTG+AGG | - | chr4_4:59736697-59736716 | Msa0691560:intron | 45.0% | |
| ! | TTTTGCCAGCCTGTAATTGC+TGG | - | chr4_4:59736971-59736990 | Msa0691560:exon | 45.0% |
| CTAATCCAGCAATTACAGGC+TGG | + | chr4_4:59736979-59736998 | None:intergenic | 45.0% | |
| CAGCCTGTAATTGCTGGATT+AGG | - | chr4_4:59736977-59736996 | Msa0691560:five_prime_UTR | 45.0% | |
| ! | GCCTGTAATTGCTGGATTAG+GGG | - | chr4_4:59736979-59736998 | Msa0691560:five_prime_UTR | 45.0% |
| TCCCCTAATCCAGCAATTAC+AGG | + | chr4_4:59736983-59737002 | None:intergenic | 45.0% | |
| GCGTCCATTGTGCAAATGAA+TGG | + | chr4_4:59737016-59737035 | None:intergenic | 45.0% | |
| ATTTGCACAATGGACGCGAT+TGG | - | chr4_4:59737019-59737038 | Msa0691560:five_prime_UTR | 45.0% | |
| GAAACAATTCTTGCCAGCCA+TGG | + | chr4_4:59735627-59735646 | None:intergenic | 45.0% | |
| ! | ACCGGAGACTTTTGCTAGTT+TGG | - | chr4_4:59735926-59735945 | Msa0691560:intron | 45.0% |
| ! | AAGGGATTGGGTTGTTGGTT+AGG | - | chr4_4:59736248-59736267 | Msa0691560:intron | 45.0% |
| AAATCGCAACTTGGTTGCAG+AGG | + | chr4_4:59736303-59736322 | None:intergenic | 45.0% | |
| CCGCAGTTAAAATCGCAACT+TGG | + | chr4_4:59736312-59736331 | None:intergenic | 45.0% | |
| AAATCTTGGCGAAGTGCATC+AGG | - | chr4_4:59736396-59736415 | Msa0691560:intron | 45.0% | |
| AATCTTGGCGAAGTGCATCA+GGG | - | chr4_4:59736397-59736416 | Msa0691560:intron | 45.0% | |
| GCATCAGGGTAGTATATGGT+AGG | - | chr4_4:59736411-59736430 | Msa0691560:intron | 45.0% | |
| TATCGACATTGGCGCATTTG+AGG | - | chr4_4:59736697-59736716 | Msa0691560:intron | 45.0% | |
| ! | TTTTGCCAGCCTGTAATTGC+TGG | - | chr4_4:59736971-59736990 | Msa0691560:exon | 45.0% |
| CTAATCCAGCAATTACAGGC+TGG | + | chr4_4:59736979-59736998 | None:intergenic | 45.0% | |
| CAGCCTGTAATTGCTGGATT+AGG | - | chr4_4:59736977-59736996 | Msa0691560:five_prime_UTR | 45.0% | |
| ! | GCCTGTAATTGCTGGATTAG+GGG | - | chr4_4:59736979-59736998 | Msa0691560:five_prime_UTR | 45.0% |
| TCCCCTAATCCAGCAATTAC+AGG | + | chr4_4:59736983-59737002 | None:intergenic | 45.0% | |
| GCGTCCATTGTGCAAATGAA+TGG | + | chr4_4:59737016-59737035 | None:intergenic | 45.0% | |
| ATTTGCACAATGGACGCGAT+TGG | - | chr4_4:59737019-59737038 | Msa0691560:five_prime_UTR | 45.0% | |
| ATTGCCAGCGATCGAAGACT+CGG | - | chr4_4:59735650-59735669 | Msa0691560:intron | 50.0% | |
| CAGGGTAGTATATGGTAGGC+TGG | - | chr4_4:59736415-59736434 | Msa0691560:intron | 50.0% | |
| ACATTGGCGCATTTGAGGAC+TGG | - | chr4_4:59736702-59736721 | Msa0691560:intron | 50.0% | |
| ATTGCCAGCGATCGAAGACT+CGG | - | chr4_4:59735650-59735669 | Msa0691560:intron | 50.0% | |
| CAGGGTAGTATATGGTAGGC+TGG | - | chr4_4:59736415-59736434 | Msa0691560:intron | 50.0% | |
| ACATTGGCGCATTTGAGGAC+TGG | - | chr4_4:59736702-59736721 | Msa0691560:intron | 50.0% | |
| CTTGCCAGCCATGGCTACTA+CGG | + | chr4_4:59735618-59735637 | None:intergenic | 55.0% | |
| GAGTCTTCGATCGCTGGCAA+TGG | + | chr4_4:59735651-59735670 | None:intergenic | 55.0% | |
| AACACCGAGTCTTCGATCGC+TGG | + | chr4_4:59735657-59735676 | None:intergenic | 55.0% | |
| CTTGCCAGCCATGGCTACTA+CGG | + | chr4_4:59735618-59735637 | None:intergenic | 55.0% | |
| GAGTCTTCGATCGCTGGCAA+TGG | + | chr4_4:59735651-59735670 | None:intergenic | 55.0% | |
| AACACCGAGTCTTCGATCGC+TGG | + | chr4_4:59735657-59735676 | None:intergenic | 55.0% | |
| !! | CGGAAGTGCCGTAGTAGCCA+TGG | - | chr4_4:59735607-59735626 | Msa0691560:intron | 60.0% |
| AGTGCCGTAGTAGCCATGGC+TGG | - | chr4_4:59735611-59735630 | Msa0691560:intron | 60.0% | |
| !! | CGGAAGTGCCGTAGTAGCCA+TGG | - | chr4_4:59735607-59735626 | Msa0691560:intron | 60.0% |
| AGTGCCGTAGTAGCCATGGC+TGG | - | chr4_4:59735611-59735630 | Msa0691560:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 59735500 | 59737057 | 59735500 | ID=Msa0691560;Name=Msa0691560 |
| chr4_4 | mRNA | 59735500 | 59737057 | 59735500 | ID=Msa0691560-mRNA-1;Parent=Msa0691560;Name=Msa0691560-mRNA-1;_AED=0.01;_eAED=0.01;_QI=84|1|1|1|1|1|3|6|130 |
| chr4_4 | exon | 59735500 | 59735599 | 59735500 | ID=Msa0691560-mRNA-1:exon:16292;Parent=Msa0691560-mRNA-1 |
| chr4_4 | exon | 59736584 | 59736691 | 59736584 | ID=Msa0691560-mRNA-1:exon:16291;Parent=Msa0691560-mRNA-1 |
| chr4_4 | exon | 59736783 | 59737057 | 59736783 | ID=Msa0691560-mRNA-1:exon:16290;Parent=Msa0691560-mRNA-1 |
| chr4_4 | five_prime_UTR | 59736974 | 59737057 | 59736974 | ID=Msa0691560-mRNA-1:five_prime_utr;Parent=Msa0691560-mRNA-1 |
| chr4_4 | CDS | 59736783 | 59736973 | 59736783 | ID=Msa0691560-mRNA-1:cds;Parent=Msa0691560-mRNA-1 |
| chr4_4 | CDS | 59736584 | 59736691 | 59736584 | ID=Msa0691560-mRNA-1:cds;Parent=Msa0691560-mRNA-1 |
| chr4_4 | CDS | 59735506 | 59735599 | 59735506 | ID=Msa0691560-mRNA-1:cds;Parent=Msa0691560-mRNA-1 |
| chr4_4 | three_prime_UTR | 59735500 | 59735505 | 59735500 | ID=Msa0691560-mRNA-1:three_prime_utr;Parent=Msa0691560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
