AlfalfaGEDB | Msa0563470

M. sativa cultivar zhongmu-4 / Msa0563470

KEGG: K02735
GO: GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005839 GO:0016020 GO:0019774 GO:0031090 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805 GO:1902494 GO:1905368 GO:1905369
PFAM: PF00227.29

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0563470	XP_003624868.1	94.531	128	7	0	3	130	2	129	4.27e-85	257

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0563470	sp\|Q9XI05\|PSB3A_ARATH	90.625	128	12	0	3	130	2	129	5.02e-84	247

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0563470	G7L4S2	94.531	128	7	0	3	130	2	129	2.04e-85	257

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0077010	Msa0563470	0.803125	4.046091e-49	-8.615850e-47
Msa0563470	Msa0691560	0.955556	2.308527e-113	-8.615850e-47
Msa0563470	Msa1253810	0.806259	8.974421e-50	-8.615850e-47
Msa0563470	Msa1454950	0.811653	6.287593e-51	-8.615850e-47

Showing 1 to 4 of 4 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0563470	MtrunA17_Chr7g0255251	94.531	128	7	3	130	2	129	3.93e-89	257
Msa0563470	MtrunA17_Chr4g0045861	94.531	128	7	3	130	2	129	9.85e-88	253
Msa0563470	MtrunA17_Chr5g0435161	33.065	124	83	6	129	12	135	1.91e-17	75.1
Msa0563470	MtrunA17_Chr2g0328831	33.065	124	83	6	129	12	135	2.02e-17	75.1

Showing 1 to 4 of 4 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0563470	AT1G21720.1	90.625	128	12	3	130	2	129	5.11e-85	247
Msa0563470	AT1G77440.2	89.844	128	13	3	130	2	129	7.08e-84	244
Msa0563470	AT1G77440.1	89.844	128	13	3	130	2	129	7.08e-84	244
Msa0563470	AT3G60820.2	33.065	124	83	6	129	12	135	8.67e-18	76.3
Msa0563470	AT3G60820.1	33.065	124	83	6	129	12	135	9.04e-18	76.3
Msa0563470	AT3G60820.3	33.065	124	83	6	129	12	135	9.04e-18	76.3

Showing 1 to 6 of 6 entries

Previous1Next

Find 34 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTCTTCATCGGTCTTTC+TGG	0.122403	4_1:+63861492	Msa0563470:CDS
AACACCGAGTCTTCGATCGC+TGG	0.522918	4_1:-63861418	None:intergenic
ACCAAACTAGCAAAAGTCTC+CGG	0.563099	4_1:-63861688	None:intergenic
ACCCTAATCTTCAATTTCTA+TGG	0.191502	4_1:-63861277	None:intergenic
AGCCTGTAATTGCTGGATTA+GGG	0.310212	4_1:+63862739	Msa0563470:CDS
AGTGCCGTAGTAGCCATGGC+TGG	0.553904	4_1:+63861375	Msa0563470:CDS
ATTACAGGCTGGCAAAAGTA+TGG	0.375854	4_1:-63862726	None:intergenic
ATTCATGATAAACTCTTCAT+CGG	0.530804	4_1:+63861483	Msa0563470:CDS
ATTGCCAGCGATCGAAGACT+CGG	0.602697	4_1:+63861414	Msa0563470:CDS
ATTTGCACAATGGACGCGAT+TGG	0.488319	4_1:+63862780	Msa0563470:CDS

Showing 1 to 10 of 34 entries

Previous1 2 3 4Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
CCTAATCTTCAATTTCTATG+GGG	-	chr4_1:63861278-63861297	None:intergenic	30.0%
CCCTAATCTTCAATTTCTAT+GGG	-	chr4_1:63861279-63861298	None:intergenic	30.0%
CCCATAGAAATTGAAGATTA+GGG	+	chr4_1:63861276-63861295	Msa0563470:five_prime_UTR	30.0%
ACCCTAATCTTCAATTTCTA+TGG	-	chr4_1:63861280-63861299	None:intergenic	30.0%
TAGTTACAGTGTTTGAGAAT+CGG	-	chr4_1:63861526-63861545	None:intergenic	30.0%
GTGATGTGAATTGAATGATT+TGG	+	chr4_1:63861784-63861803	Msa0563470:intron	30.0%
TATCACACCAAGTTCTATTA+GGG	-	chr4_1:63861951-63861970	None:intergenic	30.0%
AGTCCAAAACCTTTATAATG+TGG	-	chr4_1:63862041-63862060	None:intergenic	30.0%
GTTTGGATTTAGATAGCATT+TGG	-	chr4_1:63862426-63862445	None:intergenic	30.0%
AAGAAACATAGCATTTCAGA+GGG	-	chr4_1:63862565-63862584	None:intergenic	30.0%

Showing 1 to 10 of 190 entries

Previous1 2 3 4 5…19Next

Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	63861264	63862818	63861264	ID=Msa0563470;Name=Msa0563470
chr4_1	mRNA	63861264	63862818	63861264	ID=Msa0563470-mRNA-1;Parent=Msa0563470;Name=Msa0563470-mRNA-1;_AED=0.01;_eAED=0.01;_QI=84\|1\|1\|1\|1\|1\|3\|6\|130
chr4_1	exon	63861264	63861538	63861264	ID=Msa0563470-mRNA-1:exon:20318;Parent=Msa0563470-mRNA-1
chr4_1	exon	63861627	63861734	63861627	ID=Msa0563470-mRNA-1:exon:20319;Parent=Msa0563470-mRNA-1
chr4_1	exon	63862719	63862818	63862719	ID=Msa0563470-mRNA-1:exon:20320;Parent=Msa0563470-mRNA-1
chr4_1	five_prime_UTR	63861264	63861347	63861264	ID=Msa0563470-mRNA-1:five_prime_utr;Parent=Msa0563470-mRNA-1
chr4_1	CDS	63861348	63861538	63861348	ID=Msa0563470-mRNA-1:cds;Parent=Msa0563470-mRNA-1
chr4_1	CDS	63861627	63861734	63861627	ID=Msa0563470-mRNA-1:cds;Parent=Msa0563470-mRNA-1
chr4_1	CDS	63862719	63862812	63862719	ID=Msa0563470-mRNA-1:cds;Parent=Msa0563470-mRNA-1
chr4_1	three_prime_UTR	63862813	63862818	63862813	ID=Msa0563470-mRNA-1:three_prime_utr;Parent=Msa0563470-mRNA-1

Gene Sequence

>Msa0563470

ATGTCGACGATTTTAGATTACAACGGAAGTGCCGTAGTAGCCATGGCTGGCAAGAATTGTTTCGCCATTGCCAGCGATCGAAGACTCGGTGTTCAGCTTCAAACCATAGCTACCGATTTCCAAAGAATTTCCAAAATTCATGATAAACTCTTCATCGGTCTTTCTGGACTCGCCACCGATTCTCAAACACTGTATCAGCGTCTTGTGTTTCTGCACAAACTGTATCAGCTTCGTGAAGAACGTGATATGAAACCGGAGACTTTTGCTAGTTTGGTCTCTGCTATGCAATACGAGAAACGGTTCGGTCCATACTTTTGCCAGCCTGTAATTGCTGGATTAGGGGATGATGACAAACCATTCATTTGCACAATGGACGCGATTGGAGCAAAGTAA

Protein sequence

>Msa0563470

MSTILDYNGSAVVAMAGKNCFAIASDRRLGVQLQTIATDFQRISKIHDKLFIGLSGLATDSQTLYQRLVFLHKLYQLREERDMKPETFASLVSAMQYEKRFGPYFCQPVIAGLGDDDKPFICTMDAIGAK*