Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0563470 | XP_003624868.1 | 94.531 | 128 | 7 | 0 | 3 | 130 | 2 | 129 | 4.27e-85 | 257 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0563470 | sp|Q9XI05|PSB3A_ARATH | 90.625 | 128 | 12 | 0 | 3 | 130 | 2 | 129 | 5.02e-84 | 247 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0563470 | G7L4S2 | 94.531 | 128 | 7 | 0 | 3 | 130 | 2 | 129 | 2.04e-85 | 257 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0077010 | Msa0563470 | 0.803125 | 4.046091e-49 | -8.615850e-47 |
| Msa0563470 | Msa0691560 | 0.955556 | 2.308527e-113 | -8.615850e-47 |
| Msa0563470 | Msa1253810 | 0.806259 | 8.974421e-50 | -8.615850e-47 |
| Msa0563470 | Msa1454950 | 0.811653 | 6.287593e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0563470 | MtrunA17_Chr7g0255251 | 94.531 | 128 | 7 | 0 | 3 | 130 | 2 | 129 | 3.93e-89 | 257 |
| Msa0563470 | MtrunA17_Chr4g0045861 | 94.531 | 128 | 7 | 0 | 3 | 130 | 2 | 129 | 9.85e-88 | 253 |
| Msa0563470 | MtrunA17_Chr5g0435161 | 33.065 | 124 | 83 | 0 | 6 | 129 | 12 | 135 | 1.91e-17 | 75.1 |
| Msa0563470 | MtrunA17_Chr2g0328831 | 33.065 | 124 | 83 | 0 | 6 | 129 | 12 | 135 | 2.02e-17 | 75.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0563470 | AT1G21720.1 | 90.625 | 128 | 12 | 0 | 3 | 130 | 2 | 129 | 5.11e-85 | 247 |
| Msa0563470 | AT1G77440.2 | 89.844 | 128 | 13 | 0 | 3 | 130 | 2 | 129 | 7.08e-84 | 244 |
| Msa0563470 | AT1G77440.1 | 89.844 | 128 | 13 | 0 | 3 | 130 | 2 | 129 | 7.08e-84 | 244 |
| Msa0563470 | AT3G60820.2 | 33.065 | 124 | 83 | 0 | 6 | 129 | 12 | 135 | 8.67e-18 | 76.3 |
| Msa0563470 | AT3G60820.1 | 33.065 | 124 | 83 | 0 | 6 | 129 | 12 | 135 | 9.04e-18 | 76.3 |
| Msa0563470 | AT3G60820.3 | 33.065 | 124 | 83 | 0 | 6 | 129 | 12 | 135 | 9.04e-18 | 76.3 |
Find 34 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACTCTTCATCGGTCTTTC+TGG | 0.122403 | 4_1:+63861492 | Msa0563470:CDS |
| GAAGAGTTTATCATGAATTT+TGG | 0.140707 | 4_1:-63861478 | None:intergenic |
| ACCCTAATCTTCAATTTCTA+TGG | 0.191502 | 4_1:-63861277 | None:intergenic |
| CAGCCTGTAATTGCTGGATT+AGG | 0.273487 | 4_1:+63862738 | Msa0563470:CDS |
| CCCCATAGAAATTGAAGATT+AGG | 0.293366 | 4_1:+63861275 | Msa0563470:five_prime_UTR |
| AGCCTGTAATTGCTGGATTA+GGG | 0.310212 | 4_1:+63862739 | Msa0563470:CDS |
| CCCATAGAAATTGAAGATTA+GGG | 0.332722 | 4_1:+63861276 | Msa0563470:five_prime_UTR |
| TCCCCTAATCCAGCAATTAC+AGG | 0.353996 | 4_1:-63862741 | None:intergenic |
| ATTACAGGCTGGCAAAAGTA+TGG | 0.375854 | 4_1:-63862726 | None:intergenic |
| TTTGGAAATTCTTTGGAAAT+CGG | 0.398276 | 4_1:-63861460 | None:intergenic |
| CCCTAATCTTCAATTTCTAT+GGG | 0.421031 | 4_1:-63861276 | None:intergenic |
| GCGTCCATTGTGCAAATGAA+TGG | 0.449188 | 4_1:-63862774 | None:intergenic |
| TAGTTACAGTGTTTGAGAAT+CGG | 0.451438 | 4_1:-63861523 | None:intergenic |
| ATTTGCACAATGGACGCGAT+TGG | 0.488319 | 4_1:+63862780 | Msa0563470:CDS |
| TCTTTGGAAATCGGTAGCTA+TGG | 0.498667 | 4_1:-63861451 | None:intergenic |
| TGAAGAACGTGATATGAAAC+CGG | 0.514373 | 4_1:+63861669 | Msa0563470:CDS |
| CTGCTATGCAATACGAGAAA+CGG | 0.517535 | 4_1:+63861713 | Msa0563470:CDS |
| AACACCGAGTCTTCGATCGC+TGG | 0.522918 | 4_1:-63861418 | None:intergenic |
| ATTCATGATAAACTCTTCAT+CGG | 0.530804 | 4_1:+63861483 | Msa0563470:CDS |
| CTTGCCAGCCATGGCTACTA+CGG | 0.541713 | 4_1:-63861379 | None:intergenic |
| AGTGCCGTAGTAGCCATGGC+TGG | 0.553904 | 4_1:+63861375 | Msa0563470:CDS |
| TCTATGGGGCTTTAAGTCGA+AGG | 0.561475 | 4_1:-63861261 | None:intergenic |
| ACCAAACTAGCAAAAGTCTC+CGG | 0.563099 | 4_1:-63861688 | None:intergenic |
| CAAACCATTCATTTGCACAA+TGG | 0.566818 | 4_1:+63862770 | Msa0563470:CDS |
| GAGTCTTCGATCGCTGGCAA+TGG | 0.571455 | 4_1:-63861412 | None:intergenic |
| CGGAAGTGCCGTAGTAGCCA+TGG | 0.574000 | 4_1:+63861371 | Msa0563470:CDS |
| GCCTGTAATTGCTGGATTAG+GGG | 0.580864 | 4_1:+63862740 | Msa0563470:CDS |
| GAAACAATTCTTGCCAGCCA+TGG | 0.591960 | 4_1:-63861388 | None:intergenic |
| TTACAGTGTTTGAGAATCGG+TGG | 0.592428 | 4_1:-63861520 | None:intergenic |
| GTAATCTAAAATCGTCGACA+TGG | 0.602064 | 4_1:-63861346 | None:intergenic |
| ATTGCCAGCGATCGAAGACT+CGG | 0.602697 | 4_1:+63861414 | Msa0563470:CDS |
| CTAATCCAGCAATTACAGGC+TGG | 0.603284 | 4_1:-63862737 | None:intergenic |
| CCTAATCTTCAATTTCTATG+GGG | 0.606920 | 4_1:-63861275 | None:intergenic |
| TAATCTAAAATCGTCGACAT+GGG | 0.640528 | 4_1:-63861345 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTGTGATTGA+AGG | + | chr4_1:63861605-63861624 | Msa0563470:intron | 15.0% |
| !!! | TTTTTTTTTTTTGTGATTGA+AGG | + | chr4_1:63861605-63861624 | Msa0563470:intron | 15.0% |
| !!! | TTGAATGATTTGGTTTAATT+AGG | + | chr4_1:63861794-63861813 | Msa0563470:intron | 20.0% |
| !!! | TGAATGATTTGGTTTAATTA+GGG | + | chr4_1:63861795-63861814 | Msa0563470:intron | 20.0% |
| !! | TCATAAAATTGATCTAATCT+TGG | - | chr4_1:63861857-63861876 | None:intergenic | 20.0% |
| !! | TATACAATGAAAATTATCGT+CGG | - | chr4_1:63861974-63861993 | None:intergenic | 20.0% |
| !!! | TATATTAGTTTTCGAAGTAA+AGG | + | chr4_1:63861990-63862009 | Msa0563470:intron | 20.0% |
| !!! | ATATTAGTTTTCGAAGTAAA+GGG | + | chr4_1:63861991-63862010 | Msa0563470:intron | 20.0% |
| !!! | AGTACATTTTAGTTCAATTA+AGG | + | chr4_1:63862272-63862291 | Msa0563470:intron | 20.0% |
| !! | TTTAAATTTCAACAAGTTAC+TGG | - | chr4_1:63862542-63862561 | None:intergenic | 20.0% |
| !!! | TTGAATGATTTGGTTTAATT+AGG | + | chr4_1:63861794-63861813 | Msa0563470:intron | 20.0% |
| !!! | TGAATGATTTGGTTTAATTA+GGG | + | chr4_1:63861795-63861814 | Msa0563470:intron | 20.0% |
| !! | TCATAAAATTGATCTAATCT+TGG | - | chr4_1:63861857-63861876 | None:intergenic | 20.0% |
| !! | TATACAATGAAAATTATCGT+CGG | - | chr4_1:63861974-63861993 | None:intergenic | 20.0% |
| !!! | TATATTAGTTTTCGAAGTAA+AGG | + | chr4_1:63861990-63862009 | Msa0563470:intron | 20.0% |
| !!! | ATATTAGTTTTCGAAGTAAA+GGG | + | chr4_1:63861991-63862010 | Msa0563470:intron | 20.0% |
| !!! | AGTACATTTTAGTTCAATTA+AGG | + | chr4_1:63862272-63862291 | Msa0563470:intron | 20.0% |
| !! | TTTAAATTTCAACAAGTTAC+TGG | - | chr4_1:63862542-63862561 | None:intergenic | 20.0% |
| !! | TTTGGAAATTCTTTGGAAAT+CGG | - | chr4_1:63861463-63861482 | None:intergenic | 25.0% |
| !!! | CATGAATTTTGGAAATTCTT+TGG | - | chr4_1:63861470-63861489 | None:intergenic | 25.0% |
| !! | GAAGAGTTTATCATGAATTT+TGG | - | chr4_1:63861481-63861500 | None:intergenic | 25.0% |
| ! | ATTCATGATAAACTCTTCAT+CGG | + | chr4_1:63861483-63861502 | Msa0563470:CDS | 25.0% |
| !!! | TTTAGATCTGGATTTTGTTT+AGG | + | chr4_1:63861752-63861771 | Msa0563470:intron | 25.0% |
| !! | TGATTTGTGAATATTACAGA+TGG | + | chr4_1:63861830-63861849 | Msa0563470:intron | 25.0% |
| !!! | TTAACCTCGTTTTTAAATCT+TGG | + | chr4_1:63862143-63862162 | Msa0563470:intron | 25.0% |
| !!! | ACATTTTAGTTCAATTAAGG+AGG | + | chr4_1:63862275-63862294 | Msa0563470:intron | 25.0% |
| !! | GACAGAAAAATAGTACATTT+TGG | + | chr4_1:63862325-63862344 | Msa0563470:intron | 25.0% |
| ! | GAAATTGTTATGATGTAATC+AGG | - | chr4_1:63862607-63862626 | None:intergenic | 25.0% |
| !! | TATGCTTTCCTTTTCTTTTT+AGG | + | chr4_1:63862697-63862716 | Msa0563470:intron | 25.0% |
| !!! | TTTCCTTTTCTTTTTAGGTT+CGG | + | chr4_1:63862702-63862721 | Msa0563470:intron | 25.0% |
| !! | TTTGGAAATTCTTTGGAAAT+CGG | - | chr4_1:63861463-63861482 | None:intergenic | 25.0% |
| !!! | CATGAATTTTGGAAATTCTT+TGG | - | chr4_1:63861470-63861489 | None:intergenic | 25.0% |
| !! | GAAGAGTTTATCATGAATTT+TGG | - | chr4_1:63861481-63861500 | None:intergenic | 25.0% |
| ! | ATTCATGATAAACTCTTCAT+CGG | + | chr4_1:63861483-63861502 | Msa0563470:CDS | 25.0% |
| !!! | TTTAGATCTGGATTTTGTTT+AGG | + | chr4_1:63861752-63861771 | Msa0563470:intron | 25.0% |
| !! | TGATTTGTGAATATTACAGA+TGG | + | chr4_1:63861830-63861849 | Msa0563470:intron | 25.0% |
| !!! | TTAACCTCGTTTTTAAATCT+TGG | + | chr4_1:63862143-63862162 | Msa0563470:intron | 25.0% |
| !!! | ACATTTTAGTTCAATTAAGG+AGG | + | chr4_1:63862275-63862294 | Msa0563470:intron | 25.0% |
| !! | GACAGAAAAATAGTACATTT+TGG | + | chr4_1:63862325-63862344 | Msa0563470:intron | 25.0% |
| ! | GAAATTGTTATGATGTAATC+AGG | - | chr4_1:63862607-63862626 | None:intergenic | 25.0% |
| !! | TATGCTTTCCTTTTCTTTTT+AGG | + | chr4_1:63862697-63862716 | Msa0563470:intron | 25.0% |
| !!! | TTTCCTTTTCTTTTTAGGTT+CGG | + | chr4_1:63862702-63862721 | Msa0563470:intron | 25.0% |
| CCTAATCTTCAATTTCTATG+GGG | - | chr4_1:63861278-63861297 | None:intergenic | 30.0% | |
| CCCTAATCTTCAATTTCTAT+GGG | - | chr4_1:63861279-63861298 | None:intergenic | 30.0% | |
| CCCATAGAAATTGAAGATTA+GGG | + | chr4_1:63861276-63861295 | Msa0563470:five_prime_UTR | 30.0% | |
| ACCCTAATCTTCAATTTCTA+TGG | - | chr4_1:63861280-63861299 | None:intergenic | 30.0% | |
| ! | TAATCTAAAATCGTCGACAT+GGG | - | chr4_1:63861348-63861367 | None:intergenic | 30.0% |
| ! | TCGACGATTTTAGATTACAA+CGG | + | chr4_1:63861351-63861370 | Msa0563470:CDS | 30.0% |
| TAGTTACAGTGTTTGAGAAT+CGG | - | chr4_1:63861526-63861545 | None:intergenic | 30.0% | |
| ! | TTCTGAATCGTTTTCTGTTT+TGG | + | chr4_1:63861568-63861587 | Msa0563470:intron | 30.0% |
| ! | TCTGAATCGTTTTCTGTTTT+GGG | + | chr4_1:63861569-63861588 | Msa0563470:intron | 30.0% |
| ! | GTGATTTTCTGATTTAGATC+TGG | + | chr4_1:63861740-63861759 | Msa0563470:intron | 30.0% |
| GTGATGTGAATTGAATGATT+TGG | + | chr4_1:63861784-63861803 | Msa0563470:intron | 30.0% | |
| TATCACACCAAGTTCTATTA+GGG | - | chr4_1:63861951-63861970 | None:intergenic | 30.0% | |
| ! | CAACCACATTATAAAGGTTT+TGG | + | chr4_1:63862035-63862054 | Msa0563470:intron | 30.0% |
| AGTCCAAAACCTTTATAATG+TGG | - | chr4_1:63862041-63862060 | None:intergenic | 30.0% | |
| !!! | TTTTAGTTCAATTAAGGAGG+TGG | + | chr4_1:63862278-63862297 | Msa0563470:intron | 30.0% |
| !!! | GTACATTTTGGTTCCAATTA+AGG | + | chr4_1:63862337-63862356 | Msa0563470:intron | 30.0% |
| GTTTGGATTTAGATAGCATT+TGG | - | chr4_1:63862426-63862445 | None:intergenic | 30.0% | |
| AAGAAACATAGCATTTCAGA+GGG | - | chr4_1:63862565-63862584 | None:intergenic | 30.0% | |
| ! | AATGCTATGTTTCTTCCTTT+TGG | + | chr4_1:63862570-63862589 | Msa0563470:intron | 30.0% |
| CCTAATCTTCAATTTCTATG+GGG | - | chr4_1:63861278-63861297 | None:intergenic | 30.0% | |
| CCCTAATCTTCAATTTCTAT+GGG | - | chr4_1:63861279-63861298 | None:intergenic | 30.0% | |
| CCCATAGAAATTGAAGATTA+GGG | + | chr4_1:63861276-63861295 | Msa0563470:five_prime_UTR | 30.0% | |
| ACCCTAATCTTCAATTTCTA+TGG | - | chr4_1:63861280-63861299 | None:intergenic | 30.0% | |
| ! | TAATCTAAAATCGTCGACAT+GGG | - | chr4_1:63861348-63861367 | None:intergenic | 30.0% |
| ! | TCGACGATTTTAGATTACAA+CGG | + | chr4_1:63861351-63861370 | Msa0563470:CDS | 30.0% |
| TAGTTACAGTGTTTGAGAAT+CGG | - | chr4_1:63861526-63861545 | None:intergenic | 30.0% | |
| ! | TTCTGAATCGTTTTCTGTTT+TGG | + | chr4_1:63861568-63861587 | Msa0563470:intron | 30.0% |
| ! | TCTGAATCGTTTTCTGTTTT+GGG | + | chr4_1:63861569-63861588 | Msa0563470:intron | 30.0% |
| ! | GTGATTTTCTGATTTAGATC+TGG | + | chr4_1:63861740-63861759 | Msa0563470:intron | 30.0% |
| GTGATGTGAATTGAATGATT+TGG | + | chr4_1:63861784-63861803 | Msa0563470:intron | 30.0% | |
| TATCACACCAAGTTCTATTA+GGG | - | chr4_1:63861951-63861970 | None:intergenic | 30.0% | |
| ! | CAACCACATTATAAAGGTTT+TGG | + | chr4_1:63862035-63862054 | Msa0563470:intron | 30.0% |
| AGTCCAAAACCTTTATAATG+TGG | - | chr4_1:63862041-63862060 | None:intergenic | 30.0% | |
| !!! | TTTTAGTTCAATTAAGGAGG+TGG | + | chr4_1:63862278-63862297 | Msa0563470:intron | 30.0% |
| !!! | GTACATTTTGGTTCCAATTA+AGG | + | chr4_1:63862337-63862356 | Msa0563470:intron | 30.0% |
| GTTTGGATTTAGATAGCATT+TGG | - | chr4_1:63862426-63862445 | None:intergenic | 30.0% | |
| AAGAAACATAGCATTTCAGA+GGG | - | chr4_1:63862565-63862584 | None:intergenic | 30.0% | |
| ! | AATGCTATGTTTCTTCCTTT+TGG | + | chr4_1:63862570-63862589 | Msa0563470:intron | 30.0% |
| CCCCATAGAAATTGAAGATT+AGG | + | chr4_1:63861275-63861294 | Msa0563470:five_prime_UTR | 35.0% | |
| ! | GTAATCTAAAATCGTCGACA+TGG | - | chr4_1:63861349-63861368 | None:intergenic | 35.0% |
| TGAAGAACGTGATATGAAAC+CGG | + | chr4_1:63861669-63861688 | Msa0563470:CDS | 35.0% | |
| GTATCACACCAAGTTCTATT+AGG | - | chr4_1:63861952-63861971 | None:intergenic | 35.0% | |
| ! | AGTTTTCGAAGTAAAGGGAT+TGG | + | chr4_1:63861996-63862015 | Msa0563470:intron | 35.0% |
| ! | GTTTTCGAAGTAAAGGGATT+GGG | + | chr4_1:63861997-63862016 | Msa0563470:intron | 35.0% |
| AGGTTGCAACCACATTATAA+AGG | + | chr4_1:63862029-63862048 | Msa0563470:intron | 35.0% | |
| TTCGCCAAGATTTAAAAACG+AGG | - | chr4_1:63862150-63862169 | None:intergenic | 35.0% | |
| GTAAAACAGAACTAGACATG+AGG | + | chr4_1:63862240-63862259 | Msa0563470:intron | 35.0% | |
| !!! | CATTTTGGTTCCAATTAAGG+AGG | + | chr4_1:63862340-63862359 | Msa0563470:intron | 35.0% |
| GAAGAAACATAGCATTTCAG+AGG | - | chr4_1:63862566-63862585 | None:intergenic | 35.0% | |
| CAGGTATGTAAACAACCAAA+AGG | - | chr4_1:63862588-63862607 | None:intergenic | 35.0% | |
| CAAACCATTCATTTGCACAA+TGG | + | chr4_1:63862770-63862789 | Msa0563470:CDS | 35.0% | |
| CCCCATAGAAATTGAAGATT+AGG | + | chr4_1:63861275-63861294 | Msa0563470:five_prime_UTR | 35.0% | |
| ! | GTAATCTAAAATCGTCGACA+TGG | - | chr4_1:63861349-63861368 | None:intergenic | 35.0% |
| TGAAGAACGTGATATGAAAC+CGG | + | chr4_1:63861669-63861688 | Msa0563470:CDS | 35.0% | |
| GTATCACACCAAGTTCTATT+AGG | - | chr4_1:63861952-63861971 | None:intergenic | 35.0% | |
| ! | AGTTTTCGAAGTAAAGGGAT+TGG | + | chr4_1:63861996-63862015 | Msa0563470:intron | 35.0% |
| ! | GTTTTCGAAGTAAAGGGATT+GGG | + | chr4_1:63861997-63862016 | Msa0563470:intron | 35.0% |
| AGGTTGCAACCACATTATAA+AGG | + | chr4_1:63862029-63862048 | Msa0563470:intron | 35.0% | |
| TTCGCCAAGATTTAAAAACG+AGG | - | chr4_1:63862150-63862169 | None:intergenic | 35.0% | |
| GTAAAACAGAACTAGACATG+AGG | + | chr4_1:63862240-63862259 | Msa0563470:intron | 35.0% | |
| !!! | CATTTTGGTTCCAATTAAGG+AGG | + | chr4_1:63862340-63862359 | Msa0563470:intron | 35.0% |
| GAAGAAACATAGCATTTCAG+AGG | - | chr4_1:63862566-63862585 | None:intergenic | 35.0% | |
| CAGGTATGTAAACAACCAAA+AGG | - | chr4_1:63862588-63862607 | None:intergenic | 35.0% | |
| CAAACCATTCATTTGCACAA+TGG | + | chr4_1:63862770-63862789 | Msa0563470:CDS | 35.0% | |
| ! | TCTTTGGAAATCGGTAGCTA+TGG | - | chr4_1:63861454-63861473 | None:intergenic | 40.0% |
| AAACTCTTCATCGGTCTTTC+TGG | + | chr4_1:63861492-63861511 | Msa0563470:CDS | 40.0% | |
| TTACAGTGTTTGAGAATCGG+TGG | - | chr4_1:63861523-63861542 | None:intergenic | 40.0% | |
| ACCAAACTAGCAAAAGTCTC+CGG | - | chr4_1:63861691-63861710 | None:intergenic | 40.0% | |
| CTGCTATGCAATACGAGAAA+CGG | + | chr4_1:63861713-63861732 | Msa0563470:CDS | 40.0% | |
| GACACAACCCTAATAGAACT+TGG | + | chr4_1:63861941-63861960 | Msa0563470:intron | 40.0% | |
| ! | AAGTAAAGGGATTGGGTTGT+TGG | + | chr4_1:63862004-63862023 | Msa0563470:intron | 40.0% |
| !!! | CCAAGTTGCGATTTTAACTG+CGG | + | chr4_1:63862070-63862089 | Msa0563470:intron | 40.0% |
| ! | GCGGCTTTATCTGCAATTTA+AGG | + | chr4_1:63862089-63862108 | Msa0563470:intron | 40.0% |
| AAGTGCATCAGGGTAGTATA+TGG | + | chr4_1:63862168-63862187 | Msa0563470:intron | 40.0% | |
| ! | TTTGGTTCCAATTAAGGAGG+TGG | + | chr4_1:63862343-63862362 | Msa0563470:intron | 40.0% |
| TTCCAATTAAGGAGGTGGAA+TGG | + | chr4_1:63862348-63862367 | Msa0563470:intron | 40.0% | |
| TTCCATTCCACCTCCTTAAT+TGG | - | chr4_1:63862353-63862372 | None:intergenic | 40.0% | |
| CGATACACTACACAGTTGTT+TGG | - | chr4_1:63862443-63862462 | None:intergenic | 40.0% | |
| ! | ACTGTGTAGTGTATCGACAT+TGG | + | chr4_1:63862447-63862466 | Msa0563470:intron | 40.0% |
| GGACCGAACCTAAAAAGAAA+AGG | - | chr4_1:63862708-63862727 | None:intergenic | 40.0% | |
| ATTACAGGCTGGCAAAAGTA+TGG | - | chr4_1:63862729-63862748 | None:intergenic | 40.0% | |
| AGCCTGTAATTGCTGGATTA+GGG | + | chr4_1:63862739-63862758 | Msa0563470:CDS | 40.0% | |
| ! | TCTTTGGAAATCGGTAGCTA+TGG | - | chr4_1:63861454-63861473 | None:intergenic | 40.0% |
| AAACTCTTCATCGGTCTTTC+TGG | + | chr4_1:63861492-63861511 | Msa0563470:CDS | 40.0% | |
| TTACAGTGTTTGAGAATCGG+TGG | - | chr4_1:63861523-63861542 | None:intergenic | 40.0% | |
| ACCAAACTAGCAAAAGTCTC+CGG | - | chr4_1:63861691-63861710 | None:intergenic | 40.0% | |
| CTGCTATGCAATACGAGAAA+CGG | + | chr4_1:63861713-63861732 | Msa0563470:CDS | 40.0% | |
| GACACAACCCTAATAGAACT+TGG | + | chr4_1:63861941-63861960 | Msa0563470:intron | 40.0% | |
| ! | AAGTAAAGGGATTGGGTTGT+TGG | + | chr4_1:63862004-63862023 | Msa0563470:intron | 40.0% |
| !!! | CCAAGTTGCGATTTTAACTG+CGG | + | chr4_1:63862070-63862089 | Msa0563470:intron | 40.0% |
| ! | GCGGCTTTATCTGCAATTTA+AGG | + | chr4_1:63862089-63862108 | Msa0563470:intron | 40.0% |
| AAGTGCATCAGGGTAGTATA+TGG | + | chr4_1:63862168-63862187 | Msa0563470:intron | 40.0% | |
| ! | TTTGGTTCCAATTAAGGAGG+TGG | + | chr4_1:63862343-63862362 | Msa0563470:intron | 40.0% |
| TTCCAATTAAGGAGGTGGAA+TGG | + | chr4_1:63862348-63862367 | Msa0563470:intron | 40.0% | |
| TTCCATTCCACCTCCTTAAT+TGG | - | chr4_1:63862353-63862372 | None:intergenic | 40.0% | |
| CGATACACTACACAGTTGTT+TGG | - | chr4_1:63862443-63862462 | None:intergenic | 40.0% | |
| ! | ACTGTGTAGTGTATCGACAT+TGG | + | chr4_1:63862447-63862466 | Msa0563470:intron | 40.0% |
| GGACCGAACCTAAAAAGAAA+AGG | - | chr4_1:63862708-63862727 | None:intergenic | 40.0% | |
| ATTACAGGCTGGCAAAAGTA+TGG | - | chr4_1:63862729-63862748 | None:intergenic | 40.0% | |
| AGCCTGTAATTGCTGGATTA+GGG | + | chr4_1:63862739-63862758 | Msa0563470:CDS | 40.0% | |
| GAAACAATTCTTGCCAGCCA+TGG | - | chr4_1:63861391-63861410 | None:intergenic | 45.0% | |
| ! | ACCGGAGACTTTTGCTAGTT+TGG | + | chr4_1:63861687-63861706 | Msa0563470:CDS | 45.0% |
| ! | AAGGGATTGGGTTGTTGGTT+AGG | + | chr4_1:63862009-63862028 | Msa0563470:intron | 45.0% |
| AAATCGCAACTTGGTTGCAG+AGG | - | chr4_1:63862064-63862083 | None:intergenic | 45.0% | |
| CCGCAGTTAAAATCGCAACT+TGG | - | chr4_1:63862073-63862092 | None:intergenic | 45.0% | |
| AAATCTTGGCGAAGTGCATC+AGG | + | chr4_1:63862157-63862176 | Msa0563470:intron | 45.0% | |
| AATCTTGGCGAAGTGCATCA+GGG | + | chr4_1:63862158-63862177 | Msa0563470:intron | 45.0% | |
| GCATCAGGGTAGTATATGGT+AGG | + | chr4_1:63862172-63862191 | Msa0563470:intron | 45.0% | |
| TATCGACATTGGCGCATTTG+AGG | + | chr4_1:63862458-63862477 | Msa0563470:intron | 45.0% | |
| ! | TTTTGCCAGCCTGTAATTGC+TGG | + | chr4_1:63862732-63862751 | Msa0563470:CDS | 45.0% |
| CTAATCCAGCAATTACAGGC+TGG | - | chr4_1:63862740-63862759 | None:intergenic | 45.0% | |
| CAGCCTGTAATTGCTGGATT+AGG | + | chr4_1:63862738-63862757 | Msa0563470:CDS | 45.0% | |
| ! | GCCTGTAATTGCTGGATTAG+GGG | + | chr4_1:63862740-63862759 | Msa0563470:CDS | 45.0% |
| TCCCCTAATCCAGCAATTAC+AGG | - | chr4_1:63862744-63862763 | None:intergenic | 45.0% | |
| GCGTCCATTGTGCAAATGAA+TGG | - | chr4_1:63862777-63862796 | None:intergenic | 45.0% | |
| ATTTGCACAATGGACGCGAT+TGG | + | chr4_1:63862780-63862799 | Msa0563470:CDS | 45.0% | |
| GAAACAATTCTTGCCAGCCA+TGG | - | chr4_1:63861391-63861410 | None:intergenic | 45.0% | |
| ! | ACCGGAGACTTTTGCTAGTT+TGG | + | chr4_1:63861687-63861706 | Msa0563470:CDS | 45.0% |
| ! | AAGGGATTGGGTTGTTGGTT+AGG | + | chr4_1:63862009-63862028 | Msa0563470:intron | 45.0% |
| AAATCGCAACTTGGTTGCAG+AGG | - | chr4_1:63862064-63862083 | None:intergenic | 45.0% | |
| CCGCAGTTAAAATCGCAACT+TGG | - | chr4_1:63862073-63862092 | None:intergenic | 45.0% | |
| AAATCTTGGCGAAGTGCATC+AGG | + | chr4_1:63862157-63862176 | Msa0563470:intron | 45.0% | |
| AATCTTGGCGAAGTGCATCA+GGG | + | chr4_1:63862158-63862177 | Msa0563470:intron | 45.0% | |
| GCATCAGGGTAGTATATGGT+AGG | + | chr4_1:63862172-63862191 | Msa0563470:intron | 45.0% | |
| TATCGACATTGGCGCATTTG+AGG | + | chr4_1:63862458-63862477 | Msa0563470:intron | 45.0% | |
| ! | TTTTGCCAGCCTGTAATTGC+TGG | + | chr4_1:63862732-63862751 | Msa0563470:CDS | 45.0% |
| CTAATCCAGCAATTACAGGC+TGG | - | chr4_1:63862740-63862759 | None:intergenic | 45.0% | |
| CAGCCTGTAATTGCTGGATT+AGG | + | chr4_1:63862738-63862757 | Msa0563470:CDS | 45.0% | |
| ! | GCCTGTAATTGCTGGATTAG+GGG | + | chr4_1:63862740-63862759 | Msa0563470:CDS | 45.0% |
| TCCCCTAATCCAGCAATTAC+AGG | - | chr4_1:63862744-63862763 | None:intergenic | 45.0% | |
| GCGTCCATTGTGCAAATGAA+TGG | - | chr4_1:63862777-63862796 | None:intergenic | 45.0% | |
| ATTTGCACAATGGACGCGAT+TGG | + | chr4_1:63862780-63862799 | Msa0563470:CDS | 45.0% | |
| ATTGCCAGCGATCGAAGACT+CGG | + | chr4_1:63861414-63861433 | Msa0563470:CDS | 50.0% | |
| CAGGGTAGTATATGGTAGGC+TGG | + | chr4_1:63862176-63862195 | Msa0563470:intron | 50.0% | |
| ACATTGGCGCATTTGAGGAC+TGG | + | chr4_1:63862463-63862482 | Msa0563470:intron | 50.0% | |
| ATTGCCAGCGATCGAAGACT+CGG | + | chr4_1:63861414-63861433 | Msa0563470:CDS | 50.0% | |
| CAGGGTAGTATATGGTAGGC+TGG | + | chr4_1:63862176-63862195 | Msa0563470:intron | 50.0% | |
| ACATTGGCGCATTTGAGGAC+TGG | + | chr4_1:63862463-63862482 | Msa0563470:intron | 50.0% | |
| CTTGCCAGCCATGGCTACTA+CGG | - | chr4_1:63861382-63861401 | None:intergenic | 55.0% | |
| GAGTCTTCGATCGCTGGCAA+TGG | - | chr4_1:63861415-63861434 | None:intergenic | 55.0% | |
| AACACCGAGTCTTCGATCGC+TGG | - | chr4_1:63861421-63861440 | None:intergenic | 55.0% | |
| CTTGCCAGCCATGGCTACTA+CGG | - | chr4_1:63861382-63861401 | None:intergenic | 55.0% | |
| GAGTCTTCGATCGCTGGCAA+TGG | - | chr4_1:63861415-63861434 | None:intergenic | 55.0% | |
| AACACCGAGTCTTCGATCGC+TGG | - | chr4_1:63861421-63861440 | None:intergenic | 55.0% | |
| !! | CGGAAGTGCCGTAGTAGCCA+TGG | + | chr4_1:63861371-63861390 | Msa0563470:CDS | 60.0% |
| AGTGCCGTAGTAGCCATGGC+TGG | + | chr4_1:63861375-63861394 | Msa0563470:CDS | 60.0% | |
| !! | CGGAAGTGCCGTAGTAGCCA+TGG | + | chr4_1:63861371-63861390 | Msa0563470:CDS | 60.0% |
| AGTGCCGTAGTAGCCATGGC+TGG | + | chr4_1:63861375-63861394 | Msa0563470:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 63861264 | 63862818 | 63861264 | ID=Msa0563470;Name=Msa0563470 |
| chr4_1 | mRNA | 63861264 | 63862818 | 63861264 | ID=Msa0563470-mRNA-1;Parent=Msa0563470;Name=Msa0563470-mRNA-1;_AED=0.01;_eAED=0.01;_QI=84|1|1|1|1|1|3|6|130 |
| chr4_1 | exon | 63861264 | 63861538 | 63861264 | ID=Msa0563470-mRNA-1:exon:20318;Parent=Msa0563470-mRNA-1 |
| chr4_1 | exon | 63861627 | 63861734 | 63861627 | ID=Msa0563470-mRNA-1:exon:20319;Parent=Msa0563470-mRNA-1 |
| chr4_1 | exon | 63862719 | 63862818 | 63862719 | ID=Msa0563470-mRNA-1:exon:20320;Parent=Msa0563470-mRNA-1 |
| chr4_1 | five_prime_UTR | 63861264 | 63861347 | 63861264 | ID=Msa0563470-mRNA-1:five_prime_utr;Parent=Msa0563470-mRNA-1 |
| chr4_1 | CDS | 63861348 | 63861538 | 63861348 | ID=Msa0563470-mRNA-1:cds;Parent=Msa0563470-mRNA-1 |
| chr4_1 | CDS | 63861627 | 63861734 | 63861627 | ID=Msa0563470-mRNA-1:cds;Parent=Msa0563470-mRNA-1 |
| chr4_1 | CDS | 63862719 | 63862812 | 63862719 | ID=Msa0563470-mRNA-1:cds;Parent=Msa0563470-mRNA-1 |
| chr4_1 | three_prime_UTR | 63862813 | 63862818 | 63862813 | ID=Msa0563470-mRNA-1:three_prime_utr;Parent=Msa0563470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
