Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0691960 | XP_003607652.1 | 96.639 | 357 | 11 | 1 | 1 | 356 | 1 | 357 | 0.0 | 697 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0691960 | sp|Q9C6I6|ETFA_ARATH | 68.595 | 363 | 104 | 3 | 3 | 356 | 2 | 363 | 9.20e-176 | 495 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0691960 | G7JDV4 | 96.639 | 357 | 11 | 1 | 1 | 356 | 1 | 357 | 0.0 | 697 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0609270 | Msa0691960 | 0.847181 | 1.360113e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0691960 | MtrunA17_Chr4g0041791 | 96.639 | 357 | 11 | 1 | 1 | 356 | 1 | 357 | 0.0 | 697 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0691960 | AT1G50940.1 | 68.595 | 363 | 104 | 3 | 3 | 356 | 2 | 363 | 9.35e-177 | 495 |
Find 106 sgRNAs with CRISPR-Local
Find 355 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATTACAGGTTGCTGATTA+TGG | 0.223031 | 4_4:-60266701 | Msa0691960:intron |
| ATTGCAGCTTCAAATTCTTT+TGG | 0.232309 | 4_4:-60270241 | Msa0691960:CDS |
| TGCCGATGCTCCTATATTTC+AGG | 0.241906 | 4_4:-60266828 | Msa0691960:intron |
| ACCAGCAGCACCAAGTTTCT+TGG | 0.273868 | 4_4:+60268294 | None:intergenic |
| CCCGAACTCTATATGGCTTT+TGG | 0.284745 | 4_4:-60266920 | Msa0691960:CDS |
| TCTCCAGTTACTGATGTTAC+AGG | 0.286599 | 4_4:-60270178 | Msa0691960:CDS |
| TGTTGCTCCCGAACTCTATA+TGG | 0.302664 | 4_4:-60266927 | Msa0691960:CDS |
| AGTGCATTTCCTGCATATAT+TGG | 0.304541 | 4_4:+60268850 | None:intergenic |
| GTCCTTGTATATTAACAATT+AGG | 0.357874 | 4_4:-60268801 | Msa0691960:CDS |
| TCTGTTTCTCTTCTCTTAGC+TGG | 0.364516 | 4_4:-60271225 | Msa0691960:CDS |
| AAAGCAATTACCTGAAATAT+AGG | 0.367457 | 4_4:+60266818 | None:intergenic |
| GATATGAAGGTTGGACAAAC+TGG | 0.377150 | 4_4:-60266956 | Msa0691960:intron |
| CTTTGTACAGTCCGATATAC+TGG | 0.386395 | 4_4:-60268829 | Msa0691960:CDS |
| TCTCTTCTCTTAGCTGGCTC+TGG | 0.387863 | 4_4:-60271219 | Msa0691960:CDS |
| ATGAGAACAAAAGAGATGAT+AGG | 0.388237 | 4_4:+60271577 | None:intergenic |
| GCGAGTCGCCATTGTATTGC+TGG | 0.389080 | 4_4:+60271496 | None:intergenic |
| TCAACAGGCTTCTGAGAAAC+AGG | 0.395915 | 4_4:+60268766 | None:intergenic |
| ACCAAAAGCCATATAGAGTT+CGG | 0.403600 | 4_4:+60266919 | None:intergenic |
| CTGGGCTAAACTAGTCCATT+TGG | 0.420011 | 4_4:-60270293 | Msa0691960:CDS |
| TGAAAGATCAACCTGAGATA+TGG | 0.422186 | 4_4:+60268723 | None:intergenic |
| GGTATATATCTCAAACTTCT+CGG | 0.422410 | 4_4:-60268414 | Msa0691960:CDS |
| CTCCCACCCTTCCATCTCTC+AGG | 0.427763 | 4_4:-60271160 | Msa0691960:intron |
| ATTCCTGTAACATCAGTAAC+TGG | 0.428271 | 4_4:+60270175 | None:intergenic |
| GCCAAGAAACTTGGTGCTGC+TGG | 0.432419 | 4_4:-60268295 | Msa0691960:intron |
| GGAGAGAGAAGGAGGTTTGA+TGG | 0.437229 | 4_4:+60271287 | None:intergenic |
| AATTATTACGTTTCGAGAAG+TGG | 0.442418 | 4_4:+60271418 | None:intergenic |
| CGAGGTGCTACCAGAGTTGT+TGG | 0.446069 | 4_4:-60266660 | Msa0691960:CDS |
| CCAAAAGCCATATAGAGTTC+GGG | 0.449038 | 4_4:+60266920 | None:intergenic |
| CACCTCTTTGCTGAACCAAA+TGG | 0.450358 | 4_4:+60270278 | None:intergenic |
| TAGCCCAGGGTTCTGCCAAT+GGG | 0.450731 | 4_4:+60270308 | None:intergenic |
| AAGGACTGGCACCAGTATAT+CGG | 0.456890 | 4_4:+60268818 | None:intergenic |
| GTTCACAGCAACAATGACTT+TGG | 0.458974 | 4_4:+60266856 | None:intergenic |
| ATAATGCAAAATGAGCCTTC+TGG | 0.473346 | 4_4:+60266482 | None:intergenic |
| GGCAGCCGCCTACTCGCAAA+TGG | 0.475148 | 4_4:-60271642 | Msa0691960:five_prime_UTR |
| TTAGCCCAGGGTTCTGCCAA+TGG | 0.475265 | 4_4:+60270307 | None:intergenic |
| CTTAATTTCCATTTGCGAGT+AGG | 0.475720 | 4_4:+60271634 | None:intergenic |
| TACGTTTCGAGAAGTGGAAA+AGG | 0.475864 | 4_4:+60271424 | None:intergenic |
| TGATAAGGCTTCCATATCTC+AGG | 0.477728 | 4_4:-60268734 | Msa0691960:CDS |
| AAGAAAATGAAGTCTATAAG+TGG | 0.482029 | 4_4:-60266517 | Msa0691960:three_prime_UTR |
| ACTCGTGCTGCTGTTGATGC+AGG | 0.488675 | 4_4:-60267833 | Msa0691960:CDS |
| GTATATATCTCAAACTTCTC+GGG | 0.489381 | 4_4:-60268413 | Msa0691960:CDS |
| TTGCGAGTAGGCGGCTGCCA+TGG | 0.494576 | 4_4:+60271646 | None:intergenic |
| TGGCAGATCTGGACAAGTCT+AGG | 0.500553 | 4_4:-60268435 | Msa0691960:intron |
| AATGCACGAATTGTAGTTAC+TGG | 0.502719 | 4_4:-60268367 | Msa0691960:CDS |
| TGTTGACTCAAAATCTGATA+AGG | 0.502932 | 4_4:-60268749 | Msa0691960:CDS |
| GGAGCTATTCAACATATAGC+AGG | 0.502950 | 4_4:-60266890 | Msa0691960:CDS |
| ATTCGTGCATTCCCAAGGTC+TGG | 0.505354 | 4_4:+60268379 | None:intergenic |
| ATTGAGAAATTGTAATTCAA+AGG | 0.507042 | 4_4:+60266565 | None:intergenic |
| TGAGTGAGTAACCTGAGAGA+TGG | 0.507897 | 4_4:+60271149 | None:intergenic |
| ATTTGTTGCTAATGATCTCC+AGG | 0.509284 | 4_4:-60267810 | Msa0691960:intron |
| GAAAATCTAGCCAAGAAACT+TGG | 0.518254 | 4_4:-60268304 | Msa0691960:CDS |
| ATGACGAAGGACCAGACCTT+GGG | 0.523818 | 4_4:-60268390 | Msa0691960:CDS |
| AGAACCCATTGGCAGAACCC+TGG | 0.524794 | 4_4:-60270312 | Msa0691960:CDS |
| TGAGAACAAAAGAGATGATA+GGG | 0.527778 | 4_4:+60271578 | None:intergenic |
| GAACCCATTGGCAGAACCCT+GGG | 0.532115 | 4_4:-60270311 | Msa0691960:CDS |
| CAAATGGACTAGTTTAGCCC+AGG | 0.533498 | 4_4:+60270294 | None:intergenic |
| GCGTGGAGTGCGGAGAGAGA+AGG | 0.540459 | 4_4:+60271276 | None:intergenic |
| GTCATCGCGGAGCACGATAA+CGG | 0.542485 | 4_4:-60271312 | Msa0691960:CDS |
| TACCTGAAATATAGGAGCAT+CGG | 0.543644 | 4_4:+60266826 | None:intergenic |
| GATCTTTCAACCTTTGACGA+AGG | 0.548642 | 4_4:-60268709 | Msa0691960:intron |
| AATTGTTAATATACAAGGAC+TGG | 0.548727 | 4_4:+60268804 | None:intergenic |
| GATGACGAAGGACCAGACCT+TGG | 0.549420 | 4_4:-60268391 | Msa0691960:CDS |
| TCACACAGGCCAATATATGC+AGG | 0.554201 | 4_4:-60268859 | Msa0691960:intron |
| GTCGCCATTGTATTGCTGGT+TGG | 0.554219 | 4_4:+60271500 | None:intergenic |
| GTCCATTTGGTTCAGCAAAG+AGG | 0.561354 | 4_4:-60270280 | Msa0691960:CDS |
| GCCATTGTATTGCTGGTTGG+TGG | 0.563000 | 4_4:+60271503 | None:intergenic |
| ATGCTGATTCAGTTTAAGCA+AGG | 0.565986 | 4_4:+60271531 | None:intergenic |
| TTCAACATATAGCAGGGATG+AGG | 0.567627 | 4_4:-60266883 | Msa0691960:CDS |
| AACCTGAGAGATGGAAGGGT+GGG | 0.578721 | 4_4:+60271158 | None:intergenic |
| AAAGGATGGAGGTAAGAAGA+AGG | 0.581027 | 4_4:+60271442 | None:intergenic |
| CTGAGAGATGGAAGGGTGGG+AGG | 0.582498 | 4_4:+60271161 | None:intergenic |
| GATAAACAGACCTTCGTCAA+AGG | 0.586100 | 4_4:+60268699 | None:intergenic |
| TCAACATATAGCAGGGATGA+GGG | 0.589099 | 4_4:-60266882 | Msa0691960:CDS |
| AATTTCCATTTGCGAGTAGG+CGG | 0.589894 | 4_4:+60271637 | None:intergenic |
| TGGAGTGCGGAGAGAGAAGG+AGG | 0.590939 | 4_4:+60271279 | None:intergenic |
| ACACGTGGCGGCGTGGAGTG+CGG | 0.594993 | 4_4:+60271266 | None:intergenic |
| GAAGCAGCTTGATGAAGAGA+AGG | 0.597420 | 4_4:+60271195 | None:intergenic |
| GGAGGCAGCATCACATGCCA+TGG | 0.597945 | 4_4:-60271663 | None:intergenic |
| AGATACATTCAAGAACCCAT+TGG | 0.600709 | 4_4:-60270323 | Msa0691960:CDS |
| CTGAGAAACAGGAAAAGAAG+TGG | 0.603648 | 4_4:+60268777 | None:intergenic |
| GCTTGTGGTGTAGGTGCTCG+TGG | 0.604147 | 4_4:-60270353 | Msa0691960:intron |
| CTACAATTCGTGCATTCCCA+AGG | 0.604325 | 4_4:+60268374 | None:intergenic |
| GTTGCTGATTATGGACTCGT+AGG | 0.607528 | 4_4:-60266692 | Msa0691960:CDS |
| TTTCGAGAAGTGGAAAAGGA+TGG | 0.607804 | 4_4:+60271428 | None:intergenic |
| GACCTAATTGTTAATATACA+AGG | 0.607972 | 4_4:+60268799 | None:intergenic |
| CGAGAAGTGGAAAAGGATGG+AGG | 0.609170 | 4_4:+60271431 | None:intergenic |
| CATTTGGTTCAGCAAAGAGG+TGG | 0.612054 | 4_4:-60270277 | Msa0691960:CDS |
| GAGTAACCTGAGAGATGGAA+GGG | 0.616601 | 4_4:+60271154 | None:intergenic |
| GTTTCTTAATTGCTCCTCTG+AGG | 0.618185 | 4_4:+60271468 | None:intergenic |
| GAGGAAGACACGTGGCGGCG+TGG | 0.622680 | 4_4:+60271259 | None:intergenic |
| GAGCTATTCAACATATAGCA+GGG | 0.627640 | 4_4:-60266889 | Msa0691960:CDS |
| AAATGGACTAGTTTAGCCCA+GGG | 0.633679 | 4_4:+60270295 | None:intergenic |
| TAACCTGAGAGATGGAAGGG+TGG | 0.634315 | 4_4:+60271157 | None:intergenic |
| ACCACCAACCAGCAATACAA+TGG | 0.634955 | 4_4:-60271504 | Msa0691960:exon |
| GAAACAGAAGAGTCGTTGTG+AGG | 0.648115 | 4_4:+60271240 | None:intergenic |
| ACTCGTAGGAGATTTATTCG+AGG | 0.650456 | 4_4:-60266678 | Msa0691960:CDS |
| TGAGTAACCTGAGAGATGGA+AGG | 0.658729 | 4_4:+60271153 | None:intergenic |
| GCACGAATTGTAGTTACTGG+TGG | 0.665867 | 4_4:-60268364 | Msa0691960:CDS |
| TCTAAAAGAGCAGCAGCACG+CGG | 0.669095 | 4_4:+60270205 | None:intergenic |
| TGGAACATTATACTACCAGA+AGG | 0.670365 | 4_4:-60266497 | Msa0691960:three_prime_UTR |
| CAAACTTCTCGGGATGACGA+AGG | 0.673500 | 4_4:-60268403 | Msa0691960:CDS |
| GGGTAGCACTCTTGTCATCG+CGG | 0.684508 | 4_4:-60271325 | Msa0691960:CDS |
| GCGACTCGCATGATCCTCAG+AGG | 0.704824 | 4_4:-60271482 | Msa0691960:CDS |
| GTCGTTGTGAGGAAGACACG+TGG | 0.722430 | 4_4:+60271251 | None:intergenic |
| TGTGGTGTAGGTGCTCGTGG+CGG | 0.764994 | 4_4:-60270350 | Msa0691960:intron |
| GTTGTGAGGAAGACACGTGG+CGG | 0.786673 | 4_4:+60271254 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCAGTATTATTTTAATTTA+TGG | + | chr4_4:60267502-60267521 | None:intergenic | 10.0% |
| !!! | GTTTTTTAATTTTATTGTTT+TGG | - | chr4_4:60269123-60269142 | Msa0691960:intron | 10.0% |
| !! | ATAATTAAAAACATAAAAGT+CGG | - | chr4_4:60270557-60270576 | Msa0691960:intron | 10.0% |
| !! | TTTAGTTACTTGATTTAAAT+TGG | - | chr4_4:60267068-60267087 | Msa0691960:intron | 15.0% |
| !!! | TTTATGCAAATATTTTTTCA+AGG | + | chr4_4:60268458-60268477 | None:intergenic | 15.0% |
| !! | TATTTATTAAGACTTAAGTT+TGG | + | chr4_4:60268878-60268897 | None:intergenic | 15.0% |
| !!! | TTTATATTTTAATTTCACAC+AGG | - | chr4_4:60269247-60269266 | Msa0691960:intron | 15.0% |
| !!! | ATTTGTTATTTCTTTTTTAC+TGG | - | chr4_4:60269896-60269915 | Msa0691960:intron | 15.0% |
| !! | ATAAAACAAACAATATGATA+CGG | + | chr4_4:60270216-60270235 | None:intergenic | 15.0% |
| !! | TGTAATTTGGAAAATTAAAA+CGG | - | chr4_4:60270756-60270775 | Msa0691960:intron | 15.0% |
| !! | TTAAAATATCTTATCTAGAA+GGG | + | chr4_4:60270949-60270968 | None:intergenic | 15.0% |
| !! | ATTTGAATATGCATTATATT+TGG | - | chr4_4:60271051-60271070 | Msa0691960:intron | 15.0% |
| !! | TTTGAATATGCATTATATTT+GGG | - | chr4_4:60271052-60271071 | Msa0691960:intron | 15.0% |
| !!! | AGTTAGTATTCTGTTTTTAT+TGG | - | chr4_4:60267574-60267593 | Msa0691960:intron | 20.0% |
| !! | ACATATGTATTATAGATTCA+TGG | - | chr4_4:60268294-60268313 | Msa0691960:intron | 20.0% |
| !!! | ATAAAACTGTATCTTTTCTT+CGG | + | chr4_4:60268348-60268367 | None:intergenic | 20.0% |
| !! | ATATACATGAACCAAATTTA+CGG | + | chr4_4:60268836-60268855 | None:intergenic | 20.0% |
| !! | TATTTATAGAGCTAAAAAGT+TGG | - | chr4_4:60269075-60269094 | Msa0691960:intron | 20.0% |
| !! | AACATTTATATTTCATAAGC+AGG | + | chr4_4:60269203-60269222 | None:intergenic | 20.0% |
| !! | TGCTTATGAAATATAAATGT+TGG | - | chr4_4:60269202-60269221 | Msa0691960:intron | 20.0% |
| !! | GCTTATGAAATATAAATGTT+GGG | - | chr4_4:60269203-60269222 | Msa0691960:intron | 20.0% |
| !!! | ACTTAAAGTCTTCATTATTT+TGG | - | chr4_4:60269665-60269684 | Msa0691960:intron | 20.0% |
| !! | AAAAAGAAATAACAAATCTC+TGG | + | chr4_4:60269893-60269912 | None:intergenic | 20.0% |
| !! | AATGAACTGGAATTTAAATT+GGG | + | chr4_4:60269937-60269956 | None:intergenic | 20.0% |
| !!! | TGGTTAATTTTGAATTTGAA+AGG | + | chr4_4:60270346-60270365 | None:intergenic | 20.0% |
| !! | TGTCAAAATAAGAAATACTT+TGG | - | chr4_4:60270526-60270545 | Msa0691960:intron | 20.0% |
| !!! | TTTTAGCAAGTTTTGTAATT+TGG | - | chr4_4:60270743-60270762 | Msa0691960:intron | 20.0% |
| !! | CTTAAAATATCTTATCTAGA+AGG | + | chr4_4:60270950-60270969 | None:intergenic | 20.0% |
| !! | TTCATATCCAATTTGAAAAT+AGG | + | chr4_4:60271152-60271171 | None:intergenic | 20.0% |
| !!! | TATTTTCAAATTGGATATGA+AGG | - | chr4_4:60271151-60271170 | Msa0691960:intron | 20.0% |
| !! | ATTGAGAAATTGTAATTCAA+AGG | + | chr4_4:60271558-60271577 | None:intergenic | 20.0% |
| ! | TATAAGTAAGTAACTGAAAG+AGG | + | chr4_4:60267002-60267021 | None:intergenic | 25.0% |
| ! | TAAAATACCAAGTTTGAATC+TGG | - | chr4_4:60267168-60267187 | Msa0691960:intron | 25.0% |
| !!! | TATTGCTGATGTTGTTTTTT+TGG | - | chr4_4:60267537-60267556 | Msa0691960:intron | 25.0% |
| ! | GAACTTGAAATGATAAAAAG+AGG | - | chr4_4:60267639-60267658 | Msa0691960:intron | 25.0% |
| !! | AAGAAAATGTAAGTTGAGAA+AGG | - | chr4_4:60267664-60267683 | Msa0691960:intron | 25.0% |
| !! | AGAAAATGTAAGTTGAGAAA+GGG | - | chr4_4:60267665-60267684 | Msa0691960:intron | 25.0% |
| !! | CTGATTCTCATACTTTTATA+AGG | - | chr4_4:60267970-60267989 | Msa0691960:intron | 25.0% |
| ! | AACAAATAAGCAAGTTACAA+GGG | + | chr4_4:60268985-60269004 | None:intergenic | 25.0% |
| ! | AATTGTTAATATACAAGGAC+TGG | + | chr4_4:60269319-60269338 | None:intergenic | 25.0% |
| ! | GTCCTTGTATATTAACAATT+AGG | - | chr4_4:60269319-60269338 | Msa0691960:intron | 25.0% |
| ! | GACCTAATTGTTAATATACA+AGG | + | chr4_4:60269324-60269343 | None:intergenic | 25.0% |
| !!! | TGCATTGACAATTTGTTTTT+GGG | - | chr4_4:60269453-60269472 | Msa0691960:intron | 25.0% |
| ! | CTATAGTCAACAGATAAATA+AGG | + | chr4_4:60269512-60269531 | None:intergenic | 25.0% |
| ! | CAAATCGATGTAAATAACTA+AGG | + | chr4_4:60269589-60269608 | None:intergenic | 25.0% |
| !!! | TTTTTTACTGGATTCACAAT+AGG | - | chr4_4:60269908-60269927 | Msa0691960:intron | 25.0% |
| ! | ATGAACTGGAATTTAAATTG+GGG | + | chr4_4:60269936-60269955 | None:intergenic | 25.0% |
| ! | CAATGAACTGGAATTTAAAT+TGG | + | chr4_4:60269938-60269957 | None:intergenic | 25.0% |
| ! | TTTAAATTCCAGTTCATTGA+TGG | - | chr4_4:60269939-60269958 | Msa0691960:intron | 25.0% |
| !! | AAGACAAAGTTTCTTTTTGT+GGG | - | chr4_4:60270089-60270108 | Msa0691960:intron | 25.0% |
| ! | TTGTATGTGTATTGTTTCAT+GGG | + | chr4_4:60270370-60270389 | None:intergenic | 25.0% |
| ! | TTTGTATGTGTATTGTTTCA+TGG | + | chr4_4:60270371-60270390 | None:intergenic | 25.0% |
| ! | AAAGAGGAATAGATAATTAC+TGG | - | chr4_4:60270605-60270624 | Msa0691960:intron | 25.0% |
| !!! | AAACTTGCTAAAAGAATGAA+AGG | + | chr4_4:60270736-60270755 | None:intergenic | 25.0% |
| ! | ATGATGTATGGATCTATATT+AGG | - | chr4_4:60270825-60270844 | Msa0691960:intron | 25.0% |
| ! | GATTCATCAACTTGAATTTA+TGG | - | chr4_4:60270872-60270891 | Msa0691960:intron | 25.0% |
| !!! | TTCAATTCCATTTTAGTTCT+TGG | - | chr4_4:60271099-60271118 | Msa0691960:intron | 25.0% |
| ! | AAAGCAATTACCTGAAATAT+AGG | + | chr4_4:60271305-60271324 | None:intergenic | 25.0% |
| !!! | TATTTCAGGTAATTGCTTTT+TGG | - | chr4_4:60271306-60271325 | Msa0691960:CDS | 25.0% |
| !!! | CTTTTTGGTTTAAACTGAAA+AGG | - | chr4_4:60271321-60271340 | Msa0691960:CDS | 25.0% |
| !!! | CACACATTTTATTTTTTCTC+AGG | + | chr4_4:60271494-60271513 | None:intergenic | 25.0% |
| !!! | TCATTTTCTTCTACTTTTTC+AGG | + | chr4_4:60271593-60271612 | None:intergenic | 25.0% |
| ! | AAGAAAATGAAGTCTATAAG+TGG | - | chr4_4:60271603-60271622 | Msa0691960:five_prime_UTR | 25.0% |
| !! | ATTTTGCATTATTACTACAG+TGG | - | chr4_4:60271649-60271668 | Msa0691960:five_prime_UTR | 25.0% |
| !! | TTTTGCATTATTACTACAGT+GGG | - | chr4_4:60271650-60271669 | Msa0691960:five_prime_UTR | 25.0% |
| TGAGAACAAAAGAGATGATA+GGG | + | chr4_4:60266545-60266564 | None:intergenic | 30.0% | |
| ATGAGAACAAAAGAGATGAT+AGG | + | chr4_4:60266546-60266565 | None:intergenic | 30.0% | |
| AATTATTACGTTTCGAGAAG+TGG | + | chr4_4:60266705-60266724 | None:intergenic | 30.0% | |
| AGTTACTTACTTATATGCTC+TGG | - | chr4_4:60267007-60267026 | Msa0691960:intron | 30.0% | |
| TAATAAGCCTAAGAATTGCA+AGG | + | chr4_4:60267035-60267054 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTGTGTGTGAATGC+AGG | + | chr4_4:60267115-60267134 | None:intergenic | 30.0% |
| ATCGTTCAATCAAGATCAAA+CGG | + | chr4_4:60267195-60267214 | None:intergenic | 30.0% | |
| CTTCACAAATTCACTCATTT+GGG | + | chr4_4:60267227-60267246 | None:intergenic | 30.0% | |
| TCTTCACAAATTCACTCATT+TGG | + | chr4_4:60267228-60267247 | None:intergenic | 30.0% | |
| TTTGTGAAGACATGATTGTA+AGG | - | chr4_4:60267238-60267257 | Msa0691960:intron | 30.0% | |
| TTGTGAAGACATGATTGTAA+GGG | - | chr4_4:60267239-60267258 | Msa0691960:intron | 30.0% | |
| !! | TTCGTTGATTTCTAATACTG+AGG | - | chr4_4:60267301-60267320 | Msa0691960:intron | 30.0% |
| AGGTTTATTAACCAAGCAAT+TGG | - | chr4_4:60267321-60267340 | Msa0691960:intron | 30.0% | |
| GGTTTATTAACCAAGCAATT+GGG | - | chr4_4:60267322-60267341 | Msa0691960:intron | 30.0% | |
| ! | GAAAATGTAAGTTGAGAAAG+GGG | - | chr4_4:60267666-60267685 | Msa0691960:intron | 30.0% |
| TTGGAAGGGAGATTTAAATT+TGG | - | chr4_4:60267716-60267735 | Msa0691960:intron | 30.0% | |
| TGGAAGGGAGATTTAAATTT+GGG | - | chr4_4:60267717-60267736 | Msa0691960:intron | 30.0% | |
| !! | GGAGTTTTGATAGTTTACTT+GGG | - | chr4_4:60267738-60267757 | Msa0691960:intron | 30.0% |
| ! | ATTGCAGCTTCAAATTCTTT+TGG | - | chr4_4:60267879-60267898 | Msa0691960:intron | 30.0% |
| ! | TTGCAGCTTCAAATTCTTTT+GGG | - | chr4_4:60267880-60267899 | Msa0691960:intron | 30.0% |
| GAATAACAATACCAAACAGA+GGG | + | chr4_4:60268185-60268204 | None:intergenic | 30.0% | |
| AGAATAACAATACCAAACAG+AGG | + | chr4_4:60268186-60268205 | None:intergenic | 30.0% | |
| ! | TTATTGACTGTTTAGCGATT+AGG | - | chr4_4:60268211-60268230 | Msa0691960:intron | 30.0% |
| GCTTATCATGCTAAAATTGT+GGG | + | chr4_4:60268531-60268550 | None:intergenic | 30.0% | |
| AGCTTATCATGCTAAAATTG+TGG | + | chr4_4:60268532-60268551 | None:intergenic | 30.0% | |
| CACTTGATCTGATATTAATC+TGG | - | chr4_4:60268627-60268646 | Msa0691960:intron | 30.0% | |
| TGATATTAATCTGGATTCTG+AGG | - | chr4_4:60268636-60268655 | Msa0691960:intron | 30.0% | |
| AAATGAAAAACCTGTAAACC+TGG | - | chr4_4:60268664-60268683 | Msa0691960:intron | 30.0% | |
| AGATCTTGATACAAAACATC+AGG | - | chr4_4:60268760-60268779 | Msa0691960:CDS | 30.0% | |
| GAACAAATAAGCAAGTTACA+AGG | + | chr4_4:60268986-60269005 | None:intergenic | 30.0% | |
| TAATACTATCCCATTAGCTA+TGG | + | chr4_4:60269026-60269045 | None:intergenic | 30.0% | |
| GAATAACTTTGCATGTGTTA+AGG | - | chr4_4:60269050-60269069 | Msa0691960:intron | 30.0% | |
| AAAAAGTTGGCTAACAAAGT+AGG | - | chr4_4:60269088-60269107 | Msa0691960:intron | 30.0% | |
| !! | TTATCAGATTTTGAGTCAAC+AGG | + | chr4_4:60269372-60269391 | None:intergenic | 30.0% |
| !! | TGTTGACTCAAAATCTGATA+AGG | - | chr4_4:60269371-60269390 | Msa0691960:intron | 30.0% |
| !! | GTGCATTGACAATTTGTTTT+TGG | - | chr4_4:60269452-60269471 | Msa0691960:intron | 30.0% |
| TTTGATGCTACAAAGATCAA+TGG | - | chr4_4:60269539-60269558 | Msa0691960:intron | 30.0% | |
| TTCACATATTCAAGTCTGAA+GGG | + | chr4_4:60269624-60269643 | None:intergenic | 30.0% | |
| AATATGTGAACAATTGCAAG+TGG | - | chr4_4:60269634-60269653 | Msa0691960:intron | 30.0% | |
| GGTATATATCTCAAACTTCT+CGG | - | chr4_4:60269706-60269725 | Msa0691960:intron | 30.0% | |
| GTATATATCTCAAACTTCTC+GGG | - | chr4_4:60269707-60269726 | Msa0691960:intron | 30.0% | |
| ! | CAAGACAAAGTTTCTTTTTG+TGG | - | chr4_4:60270088-60270107 | Msa0691960:intron | 30.0% |
| AAACATGCTATCATGTGTTA+AGG | + | chr4_4:60270179-60270198 | None:intergenic | 30.0% | |
| TTGAAAGGAAGTAAAATACC+TGG | + | chr4_4:60270331-60270350 | None:intergenic | 30.0% | |
| TGTATGTGTATTGTTTCATG+GGG | + | chr4_4:60270369-60270388 | None:intergenic | 30.0% | |
| AACATATACAAAACTGCAAC+TGG | - | chr4_4:60270389-60270408 | Msa0691960:intron | 30.0% | |
| ACAATTAGCAGCATAATCAT+GGG | + | chr4_4:60270489-60270508 | None:intergenic | 30.0% | |
| GAAAAAGAAAAACATCTGTG+TGG | - | chr4_4:60270579-60270598 | Msa0691960:intron | 30.0% | |
| TTACTGGTCAATTATCACTT+TGG | - | chr4_4:60270621-60270640 | Msa0691960:intron | 30.0% | |
| TACTGGTCAATTATCACTTT+GGG | - | chr4_4:60270622-60270641 | Msa0691960:intron | 30.0% | |
| !! | GATATTTTAAGCTGCTATCT+TGG | - | chr4_4:60270959-60270978 | Msa0691960:intron | 30.0% |
| GAACTAAAATGGAATTGAAG+TGG | + | chr4_4:60271098-60271117 | None:intergenic | 30.0% | |
| ACGAATGTGAGAATAAAACT+AGG | + | chr4_4:60271125-60271144 | None:intergenic | 30.0% | |
| ! | CGTGTTTCCTATTTTCAAAT+TGG | - | chr4_4:60271142-60271161 | Msa0691960:intron | 30.0% |
| TTCAAATTGGATATGAAGGT+TGG | - | chr4_4:60271155-60271174 | Msa0691960:intron | 30.0% | |
| CTTAATTTCCATTTGCGAGT+AGG | + | chr4_4:60266489-60266508 | None:intergenic | 35.0% | |
| !! | ATGCTGATTCAGTTTAAGCA+AGG | + | chr4_4:60266592-60266611 | None:intergenic | 35.0% |
| AATTGGATCCATGTAGTGTA+GGG | - | chr4_4:60266775-60266794 | Msa0691960:intron | 35.0% | |
| TAAATTGGATTCAGTGCAGT+CGG | - | chr4_4:60267083-60267102 | Msa0691960:intron | 35.0% | |
| TGAGTGGAACAATTCTTTGT+CGG | - | chr4_4:60267406-60267425 | Msa0691960:intron | 35.0% | |
| ! | AATTTATGGTGTTAACCCTC+TGG | + | chr4_4:60267488-60267507 | None:intergenic | 35.0% |
| !! | GGGAGTTTTGATAGTTTACT+TGG | - | chr4_4:60267737-60267756 | Msa0691960:intron | 35.0% |
| AGATACATTCAAGAACCCAT+TGG | - | chr4_4:60267797-60267816 | Msa0691960:intron | 35.0% | |
| ATTCCTGTAACATCAGTAAC+TGG | + | chr4_4:60267948-60267967 | None:intergenic | 35.0% | |
| GCGTTAACTTTATCTTTGTG+AGG | - | chr4_4:60267994-60268013 | Msa0691960:intron | 35.0% | |
| CACTATTACATCGTCATGAT+TGG | - | chr4_4:60268095-60268114 | Msa0691960:intron | 35.0% | |
| CGATTAGGCTATTGTTATGA+AGG | - | chr4_4:60268226-60268245 | Msa0691960:intron | 35.0% | |
| AATACCTACCCTAAGTTTGA+CGG | + | chr4_4:60268707-60268726 | None:intergenic | 35.0% | |
| ACAACTCATGAGTTCGAAAT+CGG | + | chr4_4:60268786-60268805 | None:intergenic | 35.0% | |
| GAAGTGATACACCGTAAATT+TGG | - | chr4_4:60268822-60268841 | Msa0691960:CDS | 35.0% | |
| TGTGAAAGTCTAAACGGTTA+TGG | + | chr4_4:60268954-60268973 | None:intergenic | 35.0% | |
| TCTGCTTGTGAAAGTCTAAA+CGG | + | chr4_4:60268960-60268979 | None:intergenic | 35.0% | |
| AGCTATGGAGGTGAAATTAA+CGG | + | chr4_4:60269011-60269030 | None:intergenic | 35.0% | |
| AATTTCACCTCCATAGCTAA+TGG | - | chr4_4:60269013-60269032 | Msa0691960:intron | 35.0% | |
| ATTTCACCTCCATAGCTAAT+GGG | - | chr4_4:60269014-60269033 | Msa0691960:intron | 35.0% | |
| AGTGCATTTCCTGCATATAT+TGG | + | chr4_4:60269273-60269292 | None:intergenic | 35.0% | |
| TGAAAGATCAACCTGAGATA+TGG | + | chr4_4:60269400-60269419 | None:intergenic | 35.0% | |
| GGCAAATTGAAAACACAAGT+AGG | - | chr4_4:60269474-60269493 | Msa0691960:intron | 35.0% | |
| ! | TATCTGTTGACTATAGATCC+TGG | - | chr4_4:60269516-60269535 | Msa0691960:intron | 35.0% |
| ATCAATGGATCATCTGTATC+AGG | - | chr4_4:60269554-60269573 | Msa0691960:intron | 35.0% | |
| TCAATGGATCATCTGTATCA+GGG | - | chr4_4:60269555-60269574 | Msa0691960:intron | 35.0% | |
| TCACATATTCAAGTCTGAAG+GGG | + | chr4_4:60269623-60269642 | None:intergenic | 35.0% | |
| GTTCACATATTCAAGTCTGA+AGG | + | chr4_4:60269625-60269644 | None:intergenic | 35.0% | |
| !!! | CTTCATTATTTTGGCAGATC+TGG | - | chr4_4:60269674-60269693 | Msa0691960:intron | 35.0% |
| AATGCACGAATTGTAGTTAC+TGG | - | chr4_4:60269753-60269772 | Msa0691960:intron | 35.0% | |
| GAAAATCTAGCCAAGAAACT+TGG | - | chr4_4:60269816-60269835 | Msa0691960:intron | 35.0% | |
| ! | ATGGCATGGAGAACATTTTA+AGG | - | chr4_4:60269958-60269977 | Msa0691960:intron | 35.0% |
| TTGCTTAAACAATGCCCTAA+GGG | + | chr4_4:60270000-60270019 | None:intergenic | 35.0% | |
| ATTGCTTAAACAATGCCCTA+AGG | + | chr4_4:60270001-60270020 | None:intergenic | 35.0% | |
| CATTATCTCCTTTGTTCAGT+TGG | - | chr4_4:60270260-60270279 | Msa0691960:CDS | 35.0% | |
| ! | ATTTGTTGCTAATGATCTCC+AGG | - | chr4_4:60270310-60270329 | Msa0691960:CDS | 35.0% |
| GACAATTAGCAGCATAATCA+TGG | + | chr4_4:60270490-60270509 | None:intergenic | 35.0% | |
| ! | ATTTTCTGTCAAGTACAGCA+TGG | - | chr4_4:60270687-60270706 | Msa0691960:intron | 35.0% |
| TCAAATTAACCTCTAGCACA+AGG | + | chr4_4:60270854-60270873 | None:intergenic | 35.0% | |
| GACAAAATGGTTGGAATTGT+GGG | + | chr4_4:60270920-60270939 | None:intergenic | 35.0% | |
| TGACAAAATGGTTGGAATTG+TGG | + | chr4_4:60270921-60270940 | None:intergenic | 35.0% | |
| CGAACTTTAAGTATCTAGTC+AGG | + | chr4_4:60271008-60271027 | None:intergenic | 35.0% | |
| GATACTTAAAGTTCGTGCAA+TGG | - | chr4_4:60271013-60271032 | Msa0691960:intron | 35.0% | |
| TGCAATGGCATATCATTTGA+GGG | - | chr4_4:60271028-60271047 | Msa0691960:intron | 35.0% | |
| AACTAGGCCAAGAACTAAAA+TGG | + | chr4_4:60271109-60271128 | None:intergenic | 35.0% | |
| ACCAAAAGCCATATAGAGTT+CGG | + | chr4_4:60271204-60271223 | None:intergenic | 35.0% | |
| !! | TATATGGCTTTTGGTGTATC+TGG | - | chr4_4:60271209-60271228 | Msa0691960:CDS | 35.0% |
| GAGCTATTCAACATATAGCA+GGG | - | chr4_4:60271231-60271250 | Msa0691960:CDS | 35.0% | |
| ! | TACCTGAAATATAGGAGCAT+CGG | + | chr4_4:60271297-60271316 | None:intergenic | 35.0% |
| ATGGCAAATAAAGTAGAAGC+TGG | + | chr4_4:60271361-60271380 | None:intergenic | 35.0% | |
| GTAATTCAGCATATCACATG+AGG | + | chr4_4:60271406-60271425 | None:intergenic | 35.0% | |
| CATGTGATATGCTGAATTAC+AGG | - | chr4_4:60271406-60271425 | Msa0691960:intron | 35.0% | |
| ! | GAATTACAGGTTGCTGATTA+TGG | - | chr4_4:60271419-60271438 | Msa0691960:intron | 35.0% |
| TGGAACATTATACTACCAGA+AGG | - | chr4_4:60271623-60271642 | Msa0691960:five_prime_UTR | 35.0% | |
| ATAATGCAAAATGAGCCTTC+TGG | + | chr4_4:60271641-60271660 | None:intergenic | 35.0% | |
| AATTTCCATTTGCGAGTAGG+CGG | + | chr4_4:60266486-60266505 | None:intergenic | 40.0% | |
| GTTTCTTAATTGCTCCTCTG+AGG | + | chr4_4:60266655-60266674 | None:intergenic | 40.0% | |
| AAAGGATGGAGGTAAGAAGA+AGG | + | chr4_4:60266681-60266700 | None:intergenic | 40.0% | |
| TTTCGAGAAGTGGAAAAGGA+TGG | + | chr4_4:60266695-60266714 | None:intergenic | 40.0% | |
| TACGTTTCGAGAAGTGGAAA+AGG | + | chr4_4:60266699-60266718 | None:intergenic | 40.0% | |
| ATTCAGCAACAACGACAAAG+TGG | + | chr4_4:60266758-60266777 | None:intergenic | 40.0% | |
| CTTTGTCGTTGTTGCTGAAT+TGG | - | chr4_4:60266758-60266777 | Msa0691960:intron | 40.0% | |
| GAATTGGATCCATGTAGTGT+AGG | - | chr4_4:60266774-60266793 | Msa0691960:intron | 40.0% | |
| ! | TCTGTTTCTCTTCTCTTAGC+TGG | - | chr4_4:60266895-60266914 | Msa0691960:CDS | 40.0% |
| ! | TCTGGAACCTTGCAATTCTT+AGG | - | chr4_4:60267025-60267044 | Msa0691960:intron | 40.0% |
| AAACGGTCCAGATTCAAACT+TGG | + | chr4_4:60267178-60267197 | None:intergenic | 40.0% | |
| AATCGAGTTCAATTCCTGAG+TGG | - | chr4_4:60267390-60267409 | Msa0691960:intron | 40.0% | |
| GACAAAGAATTGTTCCACTC+AGG | + | chr4_4:60267407-60267426 | None:intergenic | 40.0% | |
| GAGTGGAACAATTCTTTGTC+GGG | - | chr4_4:60267407-60267426 | Msa0691960:intron | 40.0% | |
| TAATCTGGATTTCGGTTGTG+AGG | + | chr4_4:60267442-60267461 | None:intergenic | 40.0% | |
| CAACCGAAATCCAGATTATC+AGG | - | chr4_4:60267444-60267463 | Msa0691960:intron | 40.0% | |
| GCTCCTGATAATCTGGATTT+CGG | + | chr4_4:60267450-60267469 | None:intergenic | 40.0% | |
| ! | AATGTAAGTTGAGAAAGGGG+TGG | - | chr4_4:60267669-60267688 | Msa0691960:intron | 40.0% |
| GTATCTGTGCAGATATGTGT+TGG | - | chr4_4:60267697-60267716 | Msa0691960:intron | 40.0% | |
| TGTGCAGATATGTGTTGGAA+GGG | - | chr4_4:60267702-60267721 | Msa0691960:intron | 40.0% | |
| !! | AAATGGACTAGTTTAGCCCA+GGG | + | chr4_4:60267828-60267847 | None:intergenic | 40.0% |
| TCTCCAGTTACTGATGTTAC+AGG | - | chr4_4:60267942-60267961 | Msa0691960:intron | 40.0% | |
| TGTATTGCACAATTCGACAC+TGG | - | chr4_4:60268071-60268090 | Msa0691960:intron | 40.0% | |
| TACATCGTCATGATTGGACA+TGG | - | chr4_4:60268101-60268120 | Msa0691960:intron | 40.0% | |
| ! | AACAGAGGGTCTTGTCAAAT+AGG | + | chr4_4:60268171-60268190 | None:intergenic | 40.0% |
| ATTTGACAAGACCCTCTGTT+TGG | - | chr4_4:60268171-60268190 | Msa0691960:intron | 40.0% | |
| GTTGCAAAGCAAGAGATAGA+TGG | + | chr4_4:60268270-60268289 | None:intergenic | 40.0% | |
| ATGGAAAATCTCACTCCCTT+TGG | - | chr4_4:60268313-60268332 | Msa0691960:CDS | 40.0% | |
| AGCAGCGCAACTATAAATCT+AGG | - | chr4_4:60268492-60268511 | Msa0691960:intron | 40.0% | |
| ! | TTAGGGTAGGTATTGCTATC+AGG | - | chr4_4:60268713-60268732 | Msa0691960:CDS | 40.0% |
| CAAGATCTAGAAGCTAGCTA+TGG | + | chr4_4:60268748-60268767 | None:intergenic | 40.0% | |
| GAACTCATGAGTTGTGACTT+AGG | - | chr4_4:60268791-60268810 | Msa0691960:CDS | 40.0% | |
| TACTATCCCATTAGCTATGG+AGG | + | chr4_4:60269023-60269042 | None:intergenic | 40.0% | |
| !!! | TTATTGTTTTGGCAGCTGAC+TGG | - | chr4_4:60269134-60269153 | Msa0691960:intron | 40.0% |
| CTTTGTACAGTCCGATATAC+TGG | - | chr4_4:60269291-60269310 | Msa0691960:intron | 40.0% | |
| CTGAGAAACAGGAAAAGAAG+TGG | + | chr4_4:60269346-60269365 | None:intergenic | 40.0% | |
| TGATAAGGCTTCCATATCTC+AGG | - | chr4_4:60269386-60269405 | Msa0691960:intron | 40.0% | |
| GATCTTTCAACCTTTGACGA+AGG | - | chr4_4:60269411-60269430 | Msa0691960:intron | 40.0% | |
| GATAAACAGACCTTCGTCAA+AGG | + | chr4_4:60269424-60269443 | None:intergenic | 40.0% | |
| GATCTTTGTAGCATCAAACC+AGG | + | chr4_4:60269537-60269556 | None:intergenic | 40.0% | |
| ! | ATTCCAGTTCATTGATGGCA+TGG | - | chr4_4:60269944-60269963 | Msa0691960:intron | 40.0% |
| AAATGCTAACAAGTGCCCTT+AGG | - | chr4_4:60269982-60270001 | Msa0691960:intron | 40.0% | |
| AATGCTAACAAGTGCCCTTA+GGG | - | chr4_4:60269983-60270002 | Msa0691960:intron | 40.0% | |
| GTCCTTAAACAATGCCCTTA+GGG | - | chr4_4:60270111-60270130 | Msa0691960:intron | 40.0% | |
| TGCTATCATGTGTTAAGGCA+TGG | + | chr4_4:60270174-60270193 | None:intergenic | 40.0% | |
| ATGTGTATTGTTTCATGGGG+TGG | + | chr4_4:60270366-60270385 | None:intergenic | 40.0% | |
| ! | GACTAGACTTTTTACATCCC+TGG | - | chr4_4:60270442-60270461 | Msa0691960:intron | 40.0% |
| CAGCATAATCATGGGAGAAA+CGG | + | chr4_4:60270481-60270500 | None:intergenic | 40.0% | |
| AACATCTGTGTGGAACAAAG+AGG | - | chr4_4:60270589-60270608 | Msa0691960:intron | 40.0% | |
| TCATACATAGCGATTGGACT+AGG | + | chr4_4:60270785-60270804 | None:intergenic | 40.0% | |
| TAGTCCAATCGCTATGTATG+AGG | - | chr4_4:60270784-60270803 | Msa0691960:intron | 40.0% | |
| TATGTATGAGGTCTGAGGAA+GGG | - | chr4_4:60270796-60270815 | Msa0691960:intron | 40.0% | |
| GAAGGGTTGGATATGATGTA+TGG | - | chr4_4:60270813-60270832 | Msa0691960:intron | 40.0% | |
| CAACTTGAATTTATGGCCCT+CGG | - | chr4_4:60270879-60270898 | Msa0691960:intron | 40.0% | |
| AGAAGGGATGTCTGACAAAA+TGG | + | chr4_4:60270933-60270952 | None:intergenic | 40.0% | |
| AAGTATCTAGTCAGGAAAGC+AGG | + | chr4_4:60271000-60271019 | None:intergenic | 40.0% | |
| GTGCAATGGCATATCATTTG+AGG | - | chr4_4:60271027-60271046 | Msa0691960:intron | 40.0% | |
| GATATGAAGGTTGGACAAAC+TGG | - | chr4_4:60271164-60271183 | Msa0691960:CDS | 40.0% | |
| CCAAAAGCCATATAGAGTTC+GGG | + | chr4_4:60271203-60271222 | None:intergenic | 40.0% | |
| GGAGCTATTCAACATATAGC+AGG | - | chr4_4:60271230-60271249 | Msa0691960:CDS | 40.0% | |
| TTCAACATATAGCAGGGATG+AGG | - | chr4_4:60271237-60271256 | Msa0691960:CDS | 40.0% | |
| TCAACATATAGCAGGGATGA+GGG | - | chr4_4:60271238-60271257 | Msa0691960:CDS | 40.0% | |
| GTTCACAGCAACAATGACTT+TGG | + | chr4_4:60271267-60271286 | None:intergenic | 40.0% | |
| AACTGTTTCAGGATTGCTCA+TGG | + | chr4_4:60271380-60271399 | None:intergenic | 40.0% | |
| ACATGAGGCAAAACTGTTTC+AGG | + | chr4_4:60271391-60271410 | None:intergenic | 40.0% | |
| ACTCGTAGGAGATTTATTCG+AGG | - | chr4_4:60271442-60271461 | Msa0691960:CDS | 40.0% | |
| ACCACCAACCAGCAATACAA+TGG | - | chr4_4:60266616-60266635 | Msa0691960:three_prime_UTR | 45.0% | |
| GAAACAGAAGAGTCGTTGTG+AGG | + | chr4_4:60266883-60266902 | None:intergenic | 45.0% | |
| GAAGCAGCTTGATGAAGAGA+AGG | + | chr4_4:60266928-60266947 | None:intergenic | 45.0% | |
| GAGTAACCTGAGAGATGGAA+GGG | + | chr4_4:60266969-60266988 | None:intergenic | 45.0% | |
| TGAGTAACCTGAGAGATGGA+AGG | + | chr4_4:60266970-60266989 | None:intergenic | 45.0% | |
| TGAGTGAGTAACCTGAGAGA+TGG | + | chr4_4:60266974-60266993 | None:intergenic | 45.0% | |
| AGACATGATTGTAAGGGAGC+TGG | - | chr4_4:60267245-60267264 | Msa0691960:intron | 45.0% | |
| ATGATTGTAAGGGAGCTGGA+TGG | - | chr4_4:60267249-60267268 | Msa0691960:intron | 45.0% | |
| TGATTGTAAGGGAGCTGGAT+GGG | - | chr4_4:60267250-60267269 | Msa0691960:intron | 45.0% | |
| TGGTTAATGAGCTCCACCAA+AGG | - | chr4_4:60267351-60267370 | Msa0691960:intron | 45.0% | |
| ! | TGTTAACCCTCTGGTTCCTA+GGG | + | chr4_4:60267479-60267498 | None:intergenic | 45.0% |
| CTGTGCAGATATGTGTTGGA+AGG | - | chr4_4:60267701-60267720 | Msa0691960:intron | 45.0% | |
| ! | TTACTTGGGTATGCTGCTTG+TGG | - | chr4_4:60267752-60267771 | Msa0691960:intron | 45.0% |
| !! | CAAATGGACTAGTTTAGCCC+AGG | + | chr4_4:60267829-60267848 | None:intergenic | 45.0% |
| CTGGGCTAAACTAGTCCATT+TGG | - | chr4_4:60267827-60267846 | Msa0691960:CDS | 45.0% | |
| ! | GTCCATTTGGTTCAGCAAAG+AGG | - | chr4_4:60267840-60267859 | Msa0691960:CDS | 45.0% |
| CACCTCTTTGCTGAACCAAA+TGG | + | chr4_4:60267845-60267864 | None:intergenic | 45.0% | |
| ! | CATTTGGTTCAGCAAAGAGG+TGG | - | chr4_4:60267843-60267862 | Msa0691960:CDS | 45.0% |
| ACTGAGCAAATTCTGTGCTG+TGG | - | chr4_4:60268137-60268156 | Msa0691960:intron | 45.0% | |
| ATGCTAAAATTGTGGGCGAG+TGG | + | chr4_4:60268524-60268543 | None:intergenic | 45.0% | |
| CTCAAACAGTCCAGGTTTAC+AGG | + | chr4_4:60268677-60268696 | None:intergenic | 45.0% | |
| CTGTAAACCTGGACTGTTTG+AGG | - | chr4_4:60268675-60268694 | Msa0691960:intron | 45.0% | |
| AGGACCTATCCGTCAAACTT+AGG | - | chr4_4:60268695-60268714 | Msa0691960:intron | 45.0% | |
| GGACCTATCCGTCAAACTTA+GGG | - | chr4_4:60268696-60268715 | Msa0691960:intron | 45.0% | |
| ! | CTACCCTAAGTTTGACGGAT+AGG | + | chr4_4:60268702-60268721 | None:intergenic | 45.0% |
| CTATCCGTCAAACTTAGGGT+AGG | - | chr4_4:60268700-60268719 | Msa0691960:intron | 45.0% | |
| CATGAGTTGTGACTTAGGTG+AGG | - | chr4_4:60268796-60268815 | Msa0691960:CDS | 45.0% | |
| TCACACAGGCCAATATATGC+AGG | - | chr4_4:60269261-60269280 | Msa0691960:intron | 45.0% | |
| ! | AAGGACTGGCACCAGTATAT+CGG | + | chr4_4:60269305-60269324 | None:intergenic | 45.0% |
| ! | TCAACAGGCTTCTGAGAAAC+AGG | + | chr4_4:60269357-60269376 | None:intergenic | 45.0% |
| CTACAATTCGTGCATTCCCA+AGG | + | chr4_4:60269749-60269768 | None:intergenic | 45.0% | |
| GCACGAATTGTAGTTACTGG+TGG | - | chr4_4:60269756-60269775 | Msa0691960:intron | 45.0% | |
| TCTCCATGCCATCAATGAAC+TGG | + | chr4_4:60269950-60269969 | None:intergenic | 45.0% | |
| GGTCCTTAAACAATGCCCTT+AGG | - | chr4_4:60270110-60270129 | Msa0691960:intron | 45.0% | |
| !! | TGCCCTAAGGGCATTGTTTA+AGG | + | chr4_4:60270116-60270135 | None:intergenic | 45.0% |
| GAGTAGCACCAACTGAACAA+AGG | + | chr4_4:60270271-60270290 | None:intergenic | 45.0% | |
| ! | CTTTTTACATCCCTGGCTAC+TGG | - | chr4_4:60270449-60270468 | Msa0691960:intron | 45.0% |
| CAGACCTCATACATAGCGAT+TGG | + | chr4_4:60270791-60270810 | None:intergenic | 45.0% | |
| ATCGCTATGTATGAGGTCTG+AGG | - | chr4_4:60270791-60270810 | Msa0691960:intron | 45.0% | |
| CTATGTATGAGGTCTGAGGA+AGG | - | chr4_4:60270795-60270814 | Msa0691960:intron | 45.0% | |
| !! | ATTAGGTAGCCTTGTGCTAG+AGG | - | chr4_4:60270842-60270861 | Msa0691960:intron | 45.0% |
| TTTATGGCCCTCGGATTTAG+TGG | - | chr4_4:60270888-60270907 | Msa0691960:intron | 45.0% | |
| GGGATGTCTGACAAAATGGT+TGG | + | chr4_4:60270929-60270948 | None:intergenic | 45.0% | |
| TGTTGCTCCCGAACTCTATA+TGG | - | chr4_4:60271193-60271212 | Msa0691960:CDS | 45.0% | |
| ! | CCCGAACTCTATATGGCTTT+TGG | - | chr4_4:60271200-60271219 | Msa0691960:CDS | 45.0% |
| TGCCGATGCTCCTATATTTC+AGG | - | chr4_4:60271292-60271311 | Msa0691960:CDS | 45.0% | |
| ! | GTTGCTGATTATGGACTCGT+AGG | - | chr4_4:60271428-60271447 | Msa0691960:CDS | 45.0% |
| ! | GGAAGCTTTTCCAACAACTC+TGG | + | chr4_4:60271473-60271492 | None:intergenic | 45.0% |
| ! | GCCATTGTATTGCTGGTTGG+TGG | + | chr4_4:60266620-60266639 | None:intergenic | 50.0% |
| GTCGCCATTGTATTGCTGGT+TGG | + | chr4_4:60266623-60266642 | None:intergenic | 50.0% | |
| CGAGAAGTGGAAAAGGATGG+AGG | + | chr4_4:60266692-60266711 | None:intergenic | 50.0% | |
| GAGTGCTACCCTACACTACA+TGG | + | chr4_4:60266786-60266805 | None:intergenic | 50.0% | |
| GGAGAGAGAAGGAGGTTTGA+TGG | + | chr4_4:60266836-60266855 | None:intergenic | 50.0% | |
| ! | TCTCTTCTCTTAGCTGGCTC+TGG | - | chr4_4:60266901-60266920 | Msa0691960:CDS | 50.0% |
| AACCTGAGAGATGGAAGGGT+GGG | + | chr4_4:60266965-60266984 | None:intergenic | 50.0% | |
| TAACCTGAGAGATGGAAGGG+TGG | + | chr4_4:60266966-60266985 | None:intergenic | 50.0% | |
| GATTGTAAGGGAGCTGGATG+GGG | - | chr4_4:60267251-60267270 | Msa0691960:intron | 50.0% | |
| ACCAAGCAATTGGGCTCGTT+TGG | - | chr4_4:60267331-60267350 | Msa0691960:intron | 50.0% | |
| ACCAAACGAGCCCAATTGCT+TGG | + | chr4_4:60267335-60267354 | None:intergenic | 50.0% | |
| CTGAACGATTCGTCCTTTGG+TGG | + | chr4_4:60267367-60267386 | None:intergenic | 50.0% | |
| CACCAAAGGACGAATCGTTC+AGG | - | chr4_4:60267365-60267384 | Msa0691960:intron | 50.0% | |
| CTCCTGAACGATTCGTCCTT+TGG | + | chr4_4:60267370-60267389 | None:intergenic | 50.0% | |
| ! | GTTAACCCTCTGGTTCCTAG+GGG | + | chr4_4:60267478-60267497 | None:intergenic | 50.0% |
| ! | GTGTTAACCCTCTGGTTCCT+AGG | + | chr4_4:60267480-60267499 | None:intergenic | 50.0% |
| TCTAAAAGAGCAGCAGCACG+CGG | + | chr4_4:60267918-60267937 | None:intergenic | 50.0% | |
| CTTCGGAGACACAGTCCAAA+GGG | + | chr4_4:60268331-60268350 | None:intergenic | 50.0% | |
| TCTTCGGAGACACAGTCCAA+AGG | + | chr4_4:60268332-60268351 | None:intergenic | 50.0% | |
| GATAGGTCCTCAAACAGTCC+AGG | + | chr4_4:60268685-60268704 | None:intergenic | 50.0% | |
| TGGCAGATCTGGACAAGTCT+AGG | - | chr4_4:60269685-60269704 | Msa0691960:intron | 50.0% | |
| CAAACTTCTCGGGATGACGA+AGG | - | chr4_4:60269717-60269736 | Msa0691960:intron | 50.0% | |
| ATGACGAAGGACCAGACCTT+GGG | - | chr4_4:60269730-60269749 | Msa0691960:intron | 50.0% | |
| ATTCGTGCATTCCCAAGGTC+TGG | + | chr4_4:60269744-60269763 | None:intergenic | 50.0% | |
| ACCAGCAGCACCAAGTTTCT+TGG | + | chr4_4:60269829-60269848 | None:intergenic | 50.0% | |
| CATGCTAGCAAGTGCCCTAA+GGG | + | chr4_4:60270128-60270147 | None:intergenic | 50.0% | |
| TCATGCTAGCAAGTGCCCTA+AGG | + | chr4_4:60270129-60270148 | None:intergenic | 50.0% | |
| TGAACGACGAGATCTCACTC+TGG | - | chr4_4:60270420-60270439 | Msa0691960:intron | 50.0% | |
| TATGAGGTCTGAGGAAGGGT+TGG | - | chr4_4:60270800-60270819 | Msa0691960:intron | 50.0% | |
| ! | ATGGTTGGAATTGTGGGCTG+TGG | + | chr4_4:60270914-60270933 | None:intergenic | 50.0% |
| GCGAGTCGCCATTGTATTGC+TGG | + | chr4_4:60266627-60266646 | None:intergenic | 55.0% | |
| GGGTAGCACTCTTGTCATCG+CGG | - | chr4_4:60266795-60266814 | Msa0691960:intron | 55.0% | |
| GTCATCGCGGAGCACGATAA+CGG | - | chr4_4:60266808-60266827 | Msa0691960:intron | 55.0% | |
| GTTGTGAGGAAGACACGTGG+CGG | + | chr4_4:60266869-60266888 | None:intergenic | 55.0% | |
| GTCGTTGTGAGGAAGACACG+TGG | + | chr4_4:60266872-60266891 | None:intergenic | 55.0% | |
| GGAAGGGGCTCCTGATAATC+TGG | + | chr4_4:60267457-60267476 | None:intergenic | 55.0% | |
| ! | GGGTATGCTGCTTGTGGTGT+AGG | - | chr4_4:60267758-60267777 | Msa0691960:intron | 55.0% |
| AGAACCCATTGGCAGAACCC+TGG | - | chr4_4:60267808-60267827 | Msa0691960:intron | 55.0% | |
| GAACCCATTGGCAGAACCCT+GGG | - | chr4_4:60267809-60267828 | Msa0691960:intron | 55.0% | |
| TAGCCCAGGGTTCTGCCAAT+GGG | + | chr4_4:60267815-60267834 | None:intergenic | 55.0% | |
| TTAGCCCAGGGTTCTGCCAA+TGG | + | chr4_4:60267816-60267835 | None:intergenic | 55.0% | |
| GATGACGAAGGACCAGACCT+TGG | - | chr4_4:60269729-60269748 | Msa0691960:intron | 55.0% | |
| !! | GCCAAGAAACTTGGTGCTGC+TGG | - | chr4_4:60269825-60269844 | Msa0691960:intron | 55.0% |
| ! | ACTCGTGCTGCTGTTGATGC+AGG | - | chr4_4:60270287-60270306 | Msa0691960:CDS | 55.0% |
| ACGGAGTACACCAGTAGCCA+GGG | + | chr4_4:60270462-60270481 | None:intergenic | 55.0% | |
| AACGGAGTACACCAGTAGCC+AGG | + | chr4_4:60270463-60270482 | None:intergenic | 55.0% | |
| GCTGTGGCCACTAAATCCGA+GGG | + | chr4_4:60270898-60270917 | None:intergenic | 55.0% | |
| ! | CGAGGTGCTACCAGAGTTGT+TGG | - | chr4_4:60271460-60271479 | Msa0691960:CDS | 55.0% |
| GCGACTCGCATGATCCTCAG+AGG | - | chr4_4:60266638-60266657 | Msa0691960:CDS | 60.0% | |
| TGGAGTGCGGAGAGAGAAGG+AGG | + | chr4_4:60266844-60266863 | None:intergenic | 60.0% | |
| CTGAGAGATGGAAGGGTGGG+AGG | + | chr4_4:60266962-60266981 | None:intergenic | 60.0% | |
| CTCCCACCCTTCCATCTCTC+AGG | - | chr4_4:60266960-60266979 | Msa0691960:intron | 60.0% | |
| TATCAGGAGCCCCTTCCCCT+AGG | - | chr4_4:60267460-60267479 | Msa0691960:intron | 60.0% | |
| ! | CCTCTGGTTCCTAGGGGAAG+GGG | + | chr4_4:60267472-60267491 | None:intergenic | 60.0% |
| ! | CCCTCTGGTTCCTAGGGGAA+GGG | + | chr4_4:60267473-60267492 | None:intergenic | 60.0% |
| CCCTTCCCCTAGGAACCAGA+GGG | - | chr4_4:60267470-60267489 | Msa0691960:intron | 60.0% | |
| ! | ACCCTCTGGTTCCTAGGGGA+AGG | + | chr4_4:60267474-60267493 | None:intergenic | 60.0% |
| GCTTGTGGTGTAGGTGCTCG+TGG | - | chr4_4:60267767-60267786 | Msa0691960:intron | 60.0% | |
| TGTGGTGTAGGTGCTCGTGG+CGG | - | chr4_4:60267770-60267789 | Msa0691960:intron | 60.0% | |
| GGCTGTGGCCACTAAATCCG+AGG | + | chr4_4:60270899-60270918 | None:intergenic | 60.0% | |
| TTGCGAGTAGGCGGCTGCCA+TGG | + | chr4_4:60266477-60266496 | None:intergenic | 65.0% | |
| GGCAGCCGCCTACTCGCAAA+TGG | - | chr4_4:60266478-60266497 | Msa0691960:three_prime_UTR | 65.0% | |
| GCGTGGAGTGCGGAGAGAGA+AGG | + | chr4_4:60266847-60266866 | None:intergenic | 65.0% | |
| CCCCTTCCCCTAGGAACCAG+AGG | - | chr4_4:60267469-60267488 | Msa0691960:intron | 65.0% | |
| ACACGTGGCGGCGTGGAGTG+CGG | + | chr4_4:60266857-60266876 | None:intergenic | 70.0% | |
| GAGGAAGACACGTGGCGGCG+TGG | + | chr4_4:60266864-60266883 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 60266464 | 60271678 | 60266464 | ID=Msa0691960;Name=Msa0691960 |
| chr4_4 | mRNA | 60266464 | 60271678 | 60266464 | ID=Msa0691960-mRNA-1;Parent=Msa0691960;Name=Msa0691960-mRNA-1;_AED=0.13;_eAED=0.13;_QI=171|1|1|1|1|1|8|173|356 |
| chr4_4 | exon | 60266464 | 60266714 | 60266464 | ID=Msa0691960-mRNA-1:exon:16481;Parent=Msa0691960-mRNA-1 |
| chr4_4 | exon | 60266829 | 60266969 | 60266829 | ID=Msa0691960-mRNA-1:exon:16480;Parent=Msa0691960-mRNA-1 |
| chr4_4 | exon | 60267811 | 60267863 | 60267811 | ID=Msa0691960-mRNA-1:exon:16479;Parent=Msa0691960-mRNA-1 |
| chr4_4 | exon | 60268296 | 60268451 | 60268296 | ID=Msa0691960-mRNA-1:exon:16478;Parent=Msa0691960-mRNA-1 |
| chr4_4 | exon | 60268710 | 60268873 | 60268710 | ID=Msa0691960-mRNA-1:exon:16477;Parent=Msa0691960-mRNA-1 |
| chr4_4 | exon | 60270151 | 60270362 | 60270151 | ID=Msa0691960-mRNA-1:exon:16476;Parent=Msa0691960-mRNA-1 |
| chr4_4 | exon | 60271161 | 60271346 | 60271161 | ID=Msa0691960-mRNA-1:exon:16475;Parent=Msa0691960-mRNA-1 |
| chr4_4 | exon | 60271427 | 60271678 | 60271427 | ID=Msa0691960-mRNA-1:exon:16474;Parent=Msa0691960-mRNA-1 |
| chr4_4 | five_prime_UTR | 60271508 | 60271678 | 60271508 | ID=Msa0691960-mRNA-1:five_prime_utr;Parent=Msa0691960-mRNA-1 |
| chr4_4 | CDS | 60271427 | 60271507 | 60271427 | ID=Msa0691960-mRNA-1:cds;Parent=Msa0691960-mRNA-1 |
| chr4_4 | CDS | 60271161 | 60271346 | 60271161 | ID=Msa0691960-mRNA-1:cds;Parent=Msa0691960-mRNA-1 |
| chr4_4 | CDS | 60270151 | 60270362 | 60270151 | ID=Msa0691960-mRNA-1:cds;Parent=Msa0691960-mRNA-1 |
| chr4_4 | CDS | 60268710 | 60268873 | 60268710 | ID=Msa0691960-mRNA-1:cds;Parent=Msa0691960-mRNA-1 |
| chr4_4 | CDS | 60268296 | 60268451 | 60268296 | ID=Msa0691960-mRNA-1:cds;Parent=Msa0691960-mRNA-1 |
| chr4_4 | CDS | 60267811 | 60267863 | 60267811 | ID=Msa0691960-mRNA-1:cds;Parent=Msa0691960-mRNA-1 |
| chr4_4 | CDS | 60266829 | 60266969 | 60266829 | ID=Msa0691960-mRNA-1:cds;Parent=Msa0691960-mRNA-1 |
| chr4_4 | CDS | 60266637 | 60266714 | 60266637 | ID=Msa0691960-mRNA-1:cds;Parent=Msa0691960-mRNA-1 |
| chr4_4 | three_prime_UTR | 60266464 | 60266636 | 60266464 | ID=Msa0691960-mRNA-1:three_prime_utr;Parent=Msa0691960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
