Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0609270 | XP_003607652.1 | 96.639 | 357 | 11 | 1 | 1 | 356 | 1 | 357 | 0.0 | 697 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0609270 | sp|Q9C6I6|ETFA_ARATH | 68.871 | 363 | 103 | 3 | 3 | 356 | 2 | 363 | 1.38e-175 | 494 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0609270 | G7JDV4 | 96.639 | 357 | 11 | 1 | 1 | 356 | 1 | 357 | 0.0 | 697 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0609270 | Msa0643520 | 0.833777 | 4.388880e-56 | -8.615850e-47 |
| Msa0609270 | Msa0691960 | 0.847181 | 1.360113e-59 | -8.615850e-47 |
| Msa0609270 | Msa1128720 | 0.843366 | 1.464588e-58 | -8.615850e-47 |
| Msa0609270 | Msa1165010 | 0.821740 | 3.437751e-53 | -8.615850e-47 |
| Msa0609270 | Msa1393930 | 0.826578 | 2.512361e-54 | -8.615850e-47 |
| Msa0267230 | Msa0609270 | 0.827687 | 1.363016e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0609270 | MtrunA17_Chr4g0041791 | 96.639 | 357 | 11 | 1 | 1 | 356 | 1 | 357 | 0.0 | 697 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0609270 | AT1G50940.1 | 68.871 | 363 | 103 | 3 | 3 | 356 | 2 | 363 | 1.40e-176 | 494 |
Find 101 sgRNAs with CRISPR-Local
Find 350 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATTACAGGTTGCTGATTA+TGG | 0.223031 | 4_2:-56634789 | Msa0609270:intron |
| ATTGCAGCTTCAAATTCTTT+TGG | 0.232309 | 4_2:-56638320 | Msa0609270:CDS |
| TGCCGATGCTCCTATATTTC+AGG | 0.241906 | 4_2:-56634916 | Msa0609270:intron |
| ACCAGCAGCACCAAGTTTCT+TGG | 0.273868 | 4_2:+56636373 | None:intergenic |
| CCCGAACTCTATATGGCTTT+TGG | 0.284745 | 4_2:-56635008 | Msa0609270:CDS |
| TCTCCAGTTACTGATGTTAC+AGG | 0.286599 | 4_2:-56638257 | Msa0609270:CDS |
| TGTTGCTCCCGAACTCTATA+TGG | 0.302664 | 4_2:-56635015 | Msa0609270:CDS |
| AGTGCATTTCCTGCATATAT+TGG | 0.324061 | 4_2:+56636929 | None:intergenic |
| TCTGTTTCTCTTCTCTTAGC+TGG | 0.364516 | 4_2:-56639297 | Msa0609270:CDS |
| AAAGCAATTACCTGAAATAT+AGG | 0.367457 | 4_2:+56634906 | None:intergenic |
| GTCCTTGTATGTTAACAATT+AGG | 0.371277 | 4_2:-56636880 | Msa0609270:CDS |
| GATATGAAGGTTGGACAAAC+TGG | 0.377150 | 4_2:-56635044 | Msa0609270:intron |
| CTTTCTACAGTCCGATATAC+TGG | 0.384223 | 4_2:-56636908 | Msa0609270:CDS |
| TCTCTTCTCTTAGCTGGCTC+TGG | 0.387863 | 4_2:-56639291 | Msa0609270:CDS |
| TCAACAGGCTTCTGAGAAAC+AGG | 0.395915 | 4_2:+56636845 | None:intergenic |
| GAAACAGAAGAGTCGTTGTT+AGG | 0.397977 | 4_2:+56639312 | None:intergenic |
| ACCAAAAGCCATATAGAGTT+CGG | 0.403600 | 4_2:+56635007 | None:intergenic |
| CTGGGCTAAACTAGTCCATT+TGG | 0.420011 | 4_2:-56638372 | Msa0609270:CDS |
| TGAAAGATCAACCTGAGATA+TGG | 0.422186 | 4_2:+56636802 | None:intergenic |
| GGTATATATCTCAAACTTCT+CGG | 0.422410 | 4_2:-56636493 | Msa0609270:CDS |
| GCCTACTCGCAAGTCGCAAA+TGG | 0.422710 | 4_2:-56639754 | Msa0609270:five_prime_UTR |
| ATTCCTGTAACATCAGTAAC+TGG | 0.428271 | 4_2:+56638254 | None:intergenic |
| GCCAAGAAACTTGGTGCTGC+TGG | 0.432419 | 4_2:-56636374 | Msa0609270:intron |
| GGAGAGAGAAGGAGGTTTGA+TGG | 0.437229 | 4_2:+56639359 | None:intergenic |
| CGAGGTGCTACCAGAGTTGT+TGG | 0.446069 | 4_2:-56634748 | Msa0609270:CDS |
| CCAAAAGCCATATAGAGTTC+GGG | 0.449038 | 4_2:+56635008 | None:intergenic |
| CACCTCTTTGCTGAACCAAA+TGG | 0.450358 | 4_2:+56638357 | None:intergenic |
| TAGCCCAGGGTTCTGCCAAT+GGG | 0.450731 | 4_2:+56638387 | None:intergenic |
| CTCCCACCCTTCCATCTCTC+AGG | 0.452600 | 4_2:-56639232 | Msa0609270:intron |
| AAGGACTGGCACCAGTATAT+CGG | 0.456890 | 4_2:+56636897 | None:intergenic |
| TATTATTACGTTTCGAGAAG+TGG | 0.458296 | 4_2:+56639508 | None:intergenic |
| GTTCACAGCAACAATGACTT+TGG | 0.458974 | 4_2:+56634944 | None:intergenic |
| ATAATGCAAAATGAGCCTTC+TGG | 0.473346 | 4_2:+56634570 | None:intergenic |
| TTAGCCCAGGGTTCTGCCAA+TGG | 0.475265 | 4_2:+56638386 | None:intergenic |
| TACGTTTCGAGAAGTGGAAA+AGG | 0.475864 | 4_2:+56639514 | None:intergenic |
| TGATAAGGCTTCCATATCTC+AGG | 0.477728 | 4_2:-56636813 | Msa0609270:CDS |
| AAGAAAATGAAGTCTATAAG+TGG | 0.482029 | 4_2:-56634605 | Msa0609270:three_prime_UTR |
| ACTCGTGCTGCTGTTGATGC+AGG | 0.488675 | 4_2:-56635912 | Msa0609270:CDS |
| GTATATATCTCAAACTTCTC+GGG | 0.489381 | 4_2:-56636492 | Msa0609270:CDS |
| AGGATCATGCGAGTCGCCAT+TGG | 0.497866 | 4_2:+56639578 | None:intergenic |
| TGGCAGATCTGGACAAGTCT+AGG | 0.500553 | 4_2:-56636514 | Msa0609270:intron |
| AATGCACGAATTGTAGTTAC+TGG | 0.502719 | 4_2:-56636446 | Msa0609270:CDS |
| TGTTGACTCAAAATCTGATA+AGG | 0.502932 | 4_2:-56636828 | Msa0609270:CDS |
| GGAGCTATTCAACATATAGC+AGG | 0.502950 | 4_2:-56634978 | Msa0609270:CDS |
| ATTCGTGCATTCCCAAGGTC+TGG | 0.505354 | 4_2:+56636458 | None:intergenic |
| ATTGAGAAATTGTAATTCAA+AGG | 0.507042 | 4_2:+56634653 | None:intergenic |
| ATTTGTTGCTAATGATCTCC+AGG | 0.509284 | 4_2:-56635889 | Msa0609270:intron |
| GAAAATCTAGCCAAGAAACT+TGG | 0.518254 | 4_2:-56636383 | Msa0609270:CDS |
| ATGACGAAGGACCAGACCTT+GGG | 0.523818 | 4_2:-56636469 | Msa0609270:CDS |
| GTCATCGCGGAGCACGAAAA+CGG | 0.524580 | 4_2:-56639384 | Msa0609270:CDS |
| AGAACCCATTGGCAGAACCC+TGG | 0.524794 | 4_2:-56638391 | Msa0609270:CDS |
| GAACCCATTGGCAGAACCCT+GGG | 0.532115 | 4_2:-56638390 | Msa0609270:CDS |
| CAAATGGACTAGTTTAGCCC+AGG | 0.533498 | 4_2:+56638373 | None:intergenic |
| GCGTGGAGTGCGGAGAGAGA+AGG | 0.540459 | 4_2:+56639348 | None:intergenic |
| TACCTGAAATATAGGAGCAT+CGG | 0.543644 | 4_2:+56634914 | None:intergenic |
| GATCTTTCAACCTTTGACGA+AGG | 0.548642 | 4_2:-56636788 | Msa0609270:intron |
| AATTGTTAACATACAAGGAC+TGG | 0.548727 | 4_2:+56636883 | None:intergenic |
| GATGACGAAGGACCAGACCT+TGG | 0.549420 | 4_2:-56636470 | Msa0609270:CDS |
| TCACACAGGCCAATATATGC+AGG | 0.554201 | 4_2:-56636938 | Msa0609270:intron |
| GTCCATTTGGTTCAGCAAAG+AGG | 0.561354 | 4_2:-56638359 | Msa0609270:CDS |
| TTCAACATATAGCAGGGATG+AGG | 0.567627 | 4_2:-56634971 | Msa0609270:CDS |
| TTGCGAGTAGGCAGCTGCCA+TGG | 0.569467 | 4_2:+56639765 | None:intergenic |
| TACCTGAGAGATGGAAGGGT+GGG | 0.578721 | 4_2:+56639230 | None:intergenic |
| TACAATACAATACAATCCAA+TGG | 0.579872 | 4_2:-56639594 | Msa0609270:exon |
| AAAGGATGGAGGTAAGAAGA+AGG | 0.581027 | 4_2:+56639532 | None:intergenic |
| CTGAGAGATGGAAGGGTGGG+AGG | 0.585787 | 4_2:+56639233 | None:intergenic |
| GATAAACAGACCTTCGTCAA+AGG | 0.586100 | 4_2:+56636778 | None:intergenic |
| TCAACATATAGCAGGGATGA+GGG | 0.589099 | 4_2:-56634970 | Msa0609270:CDS |
| TGGAGTGCGGAGAGAGAAGG+AGG | 0.590939 | 4_2:+56639351 | None:intergenic |
| ACACGTGGCGGCGTGGAGTG+CGG | 0.594993 | 4_2:+56639338 | None:intergenic |
| GAAGCAGCTTGATGAAGAGA+AGG | 0.597010 | 4_2:+56639267 | None:intergenic |
| GGAGGCAGCATCACATGCCA+TGG | 0.597945 | 4_2:-56639782 | None:intergenic |
| AGATACATTCAAGAACCCAT+TGG | 0.600709 | 4_2:-56638402 | Msa0609270:CDS |
| TGAGTGAGTTACCTGAGAGA+TGG | 0.602687 | 4_2:+56639221 | None:intergenic |
| CTGAGAAACAGGAAAAGAAG+TGG | 0.603648 | 4_2:+56636856 | None:intergenic |
| GCTTGTGGTGTAGGTGCTCG+TGG | 0.604147 | 4_2:-56638432 | Msa0609270:intron |
| CTACAATTCGTGCATTCCCA+AGG | 0.604325 | 4_2:+56636453 | None:intergenic |
| GTTGCTGATTATGGACTCGT+AGG | 0.607528 | 4_2:-56634780 | Msa0609270:CDS |
| TTTCGAGAAGTGGAAAAGGA+TGG | 0.607804 | 4_2:+56639518 | None:intergenic |
| GACCTAATTGTTAACATACA+AGG | 0.607972 | 4_2:+56636878 | None:intergenic |
| CGAGAAGTGGAAAAGGATGG+AGG | 0.609170 | 4_2:+56639521 | None:intergenic |
| CATTTGGTTCAGCAAAGAGG+TGG | 0.612054 | 4_2:-56638356 | Msa0609270:CDS |
| GTTTCTTAATTGCTCCTCTG+AGG | 0.618185 | 4_2:+56639558 | None:intergenic |
| GAGTTACCTGAGAGATGGAA+GGG | 0.619890 | 4_2:+56639226 | None:intergenic |
| GAGCTATTCAACATATAGCA+GGG | 0.627640 | 4_2:-56634977 | Msa0609270:CDS |
| TAAGATAGATTATTACACAC+AGG | 0.629317 | 4_2:-56639727 | Msa0609270:five_prime_UTR |
| TAGGAAGACACGTGGCGGCG+TGG | 0.629518 | 4_2:+56639331 | None:intergenic |
| AAATGGACTAGTTTAGCCCA+GGG | 0.633679 | 4_2:+56638374 | None:intergenic |
| TTACCTGAGAGATGGAAGGG+TGG | 0.645099 | 4_2:+56639229 | None:intergenic |
| ACTCGTAGGAGATTTATTCG+AGG | 0.650456 | 4_2:-56634766 | Msa0609270:CDS |
| TGAGTTACCTGAGAGATGGA+AGG | 0.658729 | 4_2:+56639225 | None:intergenic |
| GCACGAATTGTAGTTACTGG+TGG | 0.665867 | 4_2:-56636443 | Msa0609270:CDS |
| TCCATTTGCGACTTGCGAGT+AGG | 0.668520 | 4_2:+56639753 | None:intergenic |
| TCTAAAAGAGCAGCAGCACG+CGG | 0.669095 | 4_2:+56638284 | None:intergenic |
| TGGAACATTATACTACCAGA+AGG | 0.670365 | 4_2:-56634585 | Msa0609270:three_prime_UTR |
| CAAACTTCTCGGGATGACGA+AGG | 0.673500 | 4_2:-56636482 | Msa0609270:CDS |
| GGGTAGCACTCTTGTCATCG+CGG | 0.684508 | 4_2:-56639397 | Msa0609270:CDS |
| GCGACTCGCATGATCCTCAG+AGG | 0.704824 | 4_2:-56639572 | Msa0609270:CDS |
| GTCGTTGTTAGGAAGACACG+TGG | 0.723697 | 4_2:+56639323 | None:intergenic |
| TGTGGTGTAGGTGCTCGTGG+CGG | 0.764994 | 4_2:-56638429 | Msa0609270:intron |
| GTTGTTAGGAAGACACGTGG+CGG | 0.792334 | 4_2:+56639326 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCAGTATTATTTTAATTTA+TGG | + | chr4_2:56635633-56635652 | None:intergenic | 10.0% |
| !!! | GTTTTTTAATTTTATTGTTT+TGG | - | chr4_2:56637251-56637270 | Msa0609270:intron | 10.0% |
| !! | ATAATTAAAAACATAAAAGT+CGG | - | chr4_2:56638685-56638704 | Msa0609270:intron | 10.0% |
| !! | TTTAGTTACTTGATTTAAAT+TGG | - | chr4_2:56635240-56635259 | Msa0609270:intron | 15.0% |
| !!! | AGTTATTATTCTGTTTTTAT+TGG | - | chr4_2:56635702-56635721 | Msa0609270:intron | 15.0% |
| !!! | TTTATGCAAATATTTTTTCA+AGG | + | chr4_2:56636586-56636605 | None:intergenic | 15.0% |
| !! | TATTTATTAAGACTTAAGTT+TGG | + | chr4_2:56637006-56637025 | None:intergenic | 15.0% |
| !!! | TTTATATTTTAATTTCACAC+AGG | - | chr4_2:56637375-56637394 | Msa0609270:intron | 15.0% |
| !!! | ATTTGTTATTTCTTTTTTAC+TGG | - | chr4_2:56638024-56638043 | Msa0609270:intron | 15.0% |
| !! | ATAAAACAAACAATATGATA+CGG | + | chr4_2:56638344-56638363 | None:intergenic | 15.0% |
| !! | TGTAATTTGGAAAATTAAAA+CGG | - | chr4_2:56638884-56638903 | Msa0609270:intron | 15.0% |
| !! | TTAAAATATCTTATCTAGAA+GGG | + | chr4_2:56639077-56639096 | None:intergenic | 15.0% |
| !! | AACATATAAGTAACTGAAAA+AGG | + | chr4_2:56635141-56635160 | None:intergenic | 20.0% |
| !!! | ATAAAACTGTATCTTTTCTT+CGG | + | chr4_2:56636476-56636495 | None:intergenic | 20.0% |
| !! | ATATACATGAACCAAATTTA+CGG | + | chr4_2:56636964-56636983 | None:intergenic | 20.0% |
| !! | TATTTATAGAGCTAAAAAGT+TGG | - | chr4_2:56637203-56637222 | Msa0609270:intron | 20.0% |
| !! | AACATTTATATTTCATAAGC+AGG | + | chr4_2:56637331-56637350 | None:intergenic | 20.0% |
| !! | TGCTTATGAAATATAAATGT+TGG | - | chr4_2:56637330-56637349 | Msa0609270:intron | 20.0% |
| !! | GCTTATGAAATATAAATGTT+GGG | - | chr4_2:56637331-56637350 | Msa0609270:intron | 20.0% |
| !!! | ACTTAAAGTCTTCATTATTT+TGG | - | chr4_2:56637793-56637812 | Msa0609270:intron | 20.0% |
| !! | AAAAAGAAATAACAAATCTC+TGG | + | chr4_2:56638021-56638040 | None:intergenic | 20.0% |
| !! | AATGAACTGGAATTTAAATT+GGG | + | chr4_2:56638065-56638084 | None:intergenic | 20.0% |
| !!! | TGGTTAATTTTGAATTTGAA+AGG | + | chr4_2:56638474-56638493 | None:intergenic | 20.0% |
| !! | TGTCAAAATAAGAAATACTT+TGG | - | chr4_2:56638654-56638673 | Msa0609270:intron | 20.0% |
| !!! | TTTTAGCAAGTTTTGTAATT+TGG | - | chr4_2:56638871-56638890 | Msa0609270:intron | 20.0% |
| !! | CTTAAAATATCTTATCTAGA+AGG | + | chr4_2:56639078-56639097 | None:intergenic | 20.0% |
| !! | TTCATATCCAATTTGAAAAT+AGG | + | chr4_2:56639271-56639290 | None:intergenic | 20.0% |
| !!! | TATTTTCAAATTGGATATGA+AGG | - | chr4_2:56639270-56639289 | Msa0609270:CDS | 20.0% |
| !! | ATTGAGAAATTGTAATTCAA+AGG | + | chr4_2:56639677-56639696 | None:intergenic | 20.0% |
| ! | TAAGATAGATTATTACACAC+AGG | - | chr4_2:56634600-56634619 | Msa0609270:three_prime_UTR | 25.0% |
| ! | TGAGAACAAAAAAGATGATA+GGG | + | chr4_2:56634639-56634658 | None:intergenic | 25.0% |
| ! | ATGAGAACAAAAAAGATGAT+AGG | + | chr4_2:56634640-56634659 | None:intergenic | 25.0% |
| ! | TACAATACAATACAATCCAA+TGG | - | chr4_2:56634733-56634752 | Msa0609270:CDS | 25.0% |
| ! | TTTCAGTTACTTATATGTTC+TGG | - | chr4_2:56635142-56635161 | Msa0609270:intron | 25.0% |
| ! | CTAAAAAGTAAAGAATTGCA+TGG | + | chr4_2:56635170-56635189 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTTGTGTGAATGC+AGG | + | chr4_2:56635287-56635306 | None:intergenic | 25.0% |
| ! | TAAAATACCAAGTTTGAATC+TGG | - | chr4_2:56635338-56635357 | Msa0609270:intron | 25.0% |
| !!! | TATTGCTGATGTTGTTTTTT+TGG | - | chr4_2:56635665-56635684 | Msa0609270:intron | 25.0% |
| ! | GAACTTGAAATGATAAAAAG+AGG | - | chr4_2:56635767-56635786 | Msa0609270:intron | 25.0% |
| !! | AAGAAAATGTAAGTTGAGAA+AGG | - | chr4_2:56635792-56635811 | Msa0609270:intron | 25.0% |
| !! | AGAAAATGTAAGTTGAGAAA+GGG | - | chr4_2:56635793-56635812 | Msa0609270:intron | 25.0% |
| !! | CTGATTCTCATACTTTTATA+AGG | - | chr4_2:56636098-56636117 | Msa0609270:intron | 25.0% |
| ! | CATTATTACATAGTCATGAT+TGG | - | chr4_2:56636223-56636242 | Msa0609270:intron | 25.0% |
| ! | ACATACGTATTATAGATTCA+TGG | - | chr4_2:56636422-56636441 | Msa0609270:CDS | 25.0% |
| ! | GCTTATCATACTAAAATTGT+GGG | + | chr4_2:56636659-56636678 | None:intergenic | 25.0% |
| ! | AGCTTATCATACTAAAATTG+TGG | + | chr4_2:56636660-56636679 | None:intergenic | 25.0% |
| ! | AACAAATAAGCAAGTTACAA+GGG | + | chr4_2:56637113-56637132 | None:intergenic | 25.0% |
| !!! | TGCATTGACAATTTGTTTTT+GGG | - | chr4_2:56637581-56637600 | Msa0609270:intron | 25.0% |
| ! | CTATAGTCAACAGATAAATA+AGG | + | chr4_2:56637640-56637659 | None:intergenic | 25.0% |
| ! | CAAATCGATGTAAATAACTA+AGG | + | chr4_2:56637717-56637736 | None:intergenic | 25.0% |
| !!! | TTTTTTACTGGATTCACAAT+AGG | - | chr4_2:56638036-56638055 | Msa0609270:intron | 25.0% |
| ! | ATGAACTGGAATTTAAATTG+GGG | + | chr4_2:56638064-56638083 | None:intergenic | 25.0% |
| ! | CAATGAACTGGAATTTAAAT+TGG | + | chr4_2:56638066-56638085 | None:intergenic | 25.0% |
| ! | TTTAAATTCCAGTTCATTGA+TGG | - | chr4_2:56638067-56638086 | Msa0609270:intron | 25.0% |
| !! | AAGACAAAGTTTCTTTTTGT+GGG | - | chr4_2:56638217-56638236 | Msa0609270:intron | 25.0% |
| ! | TTGTATGTGTATTGTTTCAT+GGG | + | chr4_2:56638498-56638517 | None:intergenic | 25.0% |
| ! | TTTGTATGTGTATTGTTTCA+TGG | + | chr4_2:56638499-56638518 | None:intergenic | 25.0% |
| ! | AAAGAGGAATAGATAATTAC+TGG | - | chr4_2:56638733-56638752 | Msa0609270:intron | 25.0% |
| !!! | AAACTTGCTAAAAGAATGAA+AGG | + | chr4_2:56638864-56638883 | None:intergenic | 25.0% |
| ! | ATGATGTATGGATCTATATT+AGG | - | chr4_2:56638953-56638972 | Msa0609270:intron | 25.0% |
| ! | GATTCATCAACTTGAATTTA+TGG | - | chr4_2:56639000-56639019 | Msa0609270:intron | 25.0% |
| ! | ATTTGAGGGATTTGAATATT+TGG | - | chr4_2:56639170-56639189 | Msa0609270:intron | 25.0% |
| ! | TTTGAGGGATTTGAATATTT+GGG | - | chr4_2:56639171-56639190 | Msa0609270:intron | 25.0% |
| !!! | TTCAATTCCATTTTAGTTCT+TGG | - | chr4_2:56639218-56639237 | Msa0609270:intron | 25.0% |
| ! | AAAGCAATTACCTGAAATAT+AGG | + | chr4_2:56639424-56639443 | None:intergenic | 25.0% |
| !!! | TATTTCAGGTAATTGCTTTT+TGG | - | chr4_2:56639425-56639444 | Msa0609270:intron | 25.0% |
| !!! | CTTTTTGGTTTAAACTGAAA+AGG | - | chr4_2:56639440-56639459 | Msa0609270:intron | 25.0% |
| !!! | CACACATTTTATTTTTTCTC+AGG | + | chr4_2:56639613-56639632 | None:intergenic | 25.0% |
| !!! | TCATTTTCTTCTACTTTTTC+AGG | + | chr4_2:56639712-56639731 | None:intergenic | 25.0% |
| ! | AAGAAAATGAAGTCTATAAG+TGG | - | chr4_2:56639722-56639741 | Msa0609270:five_prime_UTR | 25.0% |
| !! | ATTTTGCATTATTACTACAG+TGG | - | chr4_2:56639768-56639787 | Msa0609270:five_prime_UTR | 25.0% |
| !! | TTTTGCATTATTACTACAGT+GGG | - | chr4_2:56639769-56639788 | Msa0609270:five_prime_UTR | 25.0% |
| ! | ATTGTATTTTCTCTTCAGAG+TGG | + | chr4_2:56634714-56634733 | None:intergenic | 30.0% |
| TATTATTACGTTTCGAGAAG+TGG | + | chr4_2:56634822-56634841 | None:intergenic | 30.0% | |
| TTATGTTCTAATAAGCCTAG+TGG | + | chr4_2:56635215-56635234 | None:intergenic | 30.0% | |
| ATCGTTCAATCAAGATCAAA+CGG | + | chr4_2:56635365-56635384 | None:intergenic | 30.0% | |
| CTTCACAAATTCACTCATTT+GGG | + | chr4_2:56635397-56635416 | None:intergenic | 30.0% | |
| TCTTCACAAATTCACTCATT+TGG | + | chr4_2:56635398-56635417 | None:intergenic | 30.0% | |
| TTTGTGAAGACATGATTGTA+AGG | - | chr4_2:56635408-56635427 | Msa0609270:intron | 30.0% | |
| TTGTGAAGACATGATTGTAA+GGG | - | chr4_2:56635409-56635428 | Msa0609270:intron | 30.0% | |
| ! | GAAAATGTAAGTTGAGAAAG+GGG | - | chr4_2:56635794-56635813 | Msa0609270:intron | 30.0% |
| TTGGAAGGGAGATTTAAATT+TGG | - | chr4_2:56635844-56635863 | Msa0609270:intron | 30.0% | |
| TGGAAGGGAGATTTAAATTT+GGG | - | chr4_2:56635845-56635864 | Msa0609270:intron | 30.0% | |
| !! | GGAGTTTTGATAGTTTACTT+GGG | - | chr4_2:56635866-56635885 | Msa0609270:intron | 30.0% |
| ! | ATTGCAGCTTCAAATTCTTT+TGG | - | chr4_2:56636007-56636026 | Msa0609270:intron | 30.0% |
| ! | TTGCAGCTTCAAATTCTTTT+GGG | - | chr4_2:56636008-56636027 | Msa0609270:intron | 30.0% |
| !!! | GCGTTAACTTTATTTTTGTG+AGG | - | chr4_2:56636122-56636141 | Msa0609270:intron | 30.0% |
| GAATAACAATACCAAACAGA+GGG | + | chr4_2:56636313-56636332 | None:intergenic | 30.0% | |
| AGAATAACAATACCAAACAG+AGG | + | chr4_2:56636314-56636333 | None:intergenic | 30.0% | |
| ! | TTATTGACTGTTTAGCGATT+AGG | - | chr4_2:56636339-56636358 | Msa0609270:intron | 30.0% |
| CACTTGATCTGATATTAATC+TGG | - | chr4_2:56636755-56636774 | Msa0609270:intron | 30.0% | |
| TGATATTAATCTGGATTCTG+AGG | - | chr4_2:56636764-56636783 | Msa0609270:intron | 30.0% | |
| AAATGAAAAACCTGTAAACC+TGG | - | chr4_2:56636792-56636811 | Msa0609270:CDS | 30.0% | |
| AGATCTTGATACAAAACATC+AGG | - | chr4_2:56636888-56636907 | Msa0609270:CDS | 30.0% | |
| GAACAAATAAGCAAGTTACA+AGG | + | chr4_2:56637114-56637133 | None:intergenic | 30.0% | |
| TAATACTATCCCATTAGCTA+TGG | + | chr4_2:56637154-56637173 | None:intergenic | 30.0% | |
| GAATAACTTTGCATGTGTTA+AGG | - | chr4_2:56637178-56637197 | Msa0609270:intron | 30.0% | |
| AAAAAGTTGGCTAACAAAGT+AGG | - | chr4_2:56637216-56637235 | Msa0609270:intron | 30.0% | |
| AAAAGTTGGCTAACAAAGTA+GGG | - | chr4_2:56637217-56637236 | Msa0609270:intron | 30.0% | |
| AATTGTTAACATACAAGGAC+TGG | + | chr4_2:56637447-56637466 | None:intergenic | 30.0% | |
| GTCCTTGTATGTTAACAATT+AGG | - | chr4_2:56637447-56637466 | Msa0609270:intron | 30.0% | |
| GACCTAATTGTTAACATACA+AGG | + | chr4_2:56637452-56637471 | None:intergenic | 30.0% | |
| !! | TTATCAGATTTTGAGTCAAC+AGG | + | chr4_2:56637500-56637519 | None:intergenic | 30.0% |
| !! | TGTTGACTCAAAATCTGATA+AGG | - | chr4_2:56637499-56637518 | Msa0609270:intron | 30.0% |
| !! | GTGCATTGACAATTTGTTTT+TGG | - | chr4_2:56637580-56637599 | Msa0609270:intron | 30.0% |
| TTTGATGCTACAAAGATCAA+TGG | - | chr4_2:56637667-56637686 | Msa0609270:intron | 30.0% | |
| TTCACATATTCAAGTCTGAA+GGG | + | chr4_2:56637752-56637771 | None:intergenic | 30.0% | |
| AATATGTGAACAATTGCAAG+TGG | - | chr4_2:56637762-56637781 | Msa0609270:intron | 30.0% | |
| GGTATATATCTCAAACTTCT+CGG | - | chr4_2:56637834-56637853 | Msa0609270:intron | 30.0% | |
| GTATATATCTCAAACTTCTC+GGG | - | chr4_2:56637835-56637854 | Msa0609270:intron | 30.0% | |
| ! | CAAGACAAAGTTTCTTTTTG+TGG | - | chr4_2:56638216-56638235 | Msa0609270:intron | 30.0% |
| AAACATGCTATCATGTGTTA+AGG | + | chr4_2:56638307-56638326 | None:intergenic | 30.0% | |
| TTGAAAGGAAGTAAAATACC+TGG | + | chr4_2:56638459-56638478 | None:intergenic | 30.0% | |
| TGTATGTGTATTGTTTCATG+GGG | + | chr4_2:56638497-56638516 | None:intergenic | 30.0% | |
| AACATATACAAAACTGCAAC+TGG | - | chr4_2:56638517-56638536 | Msa0609270:intron | 30.0% | |
| ACAATTAGCAGCATAATCAT+GGG | + | chr4_2:56638617-56638636 | None:intergenic | 30.0% | |
| GAAAAAGAAAAACATCTGTG+TGG | - | chr4_2:56638707-56638726 | Msa0609270:intron | 30.0% | |
| TTACTGGTCAATTATCACTT+TGG | - | chr4_2:56638749-56638768 | Msa0609270:intron | 30.0% | |
| TACTGGTCAATTATCACTTT+GGG | - | chr4_2:56638750-56638769 | Msa0609270:intron | 30.0% | |
| !! | GATATTTTAAGCTGCTATCT+TGG | - | chr4_2:56639087-56639106 | Msa0609270:intron | 30.0% |
| GAACTAAAATGGAATTGAAG+TGG | + | chr4_2:56639217-56639236 | None:intergenic | 30.0% | |
| ACGAATGTGAGAATAAAACT+AGG | + | chr4_2:56639244-56639263 | None:intergenic | 30.0% | |
| ! | CGTGTTTCCTATTTTCAAAT+TGG | - | chr4_2:56639261-56639280 | Msa0609270:CDS | 30.0% |
| TTCAAATTGGATATGAAGGT+TGG | - | chr4_2:56639274-56639293 | Msa0609270:CDS | 30.0% | |
| ATCATTCCACTTTGCTGAAT+TGG | - | chr4_2:56634893-56634912 | Msa0609270:intron | 35.0% | |
| AATTGGATCGATGTAGTGTA+GGG | - | chr4_2:56634910-56634929 | Msa0609270:intron | 35.0% | |
| TAAATTGGATTCAGTGCAGT+CGG | - | chr4_2:56635255-56635274 | Msa0609270:intron | 35.0% | |
| TGAGTGGAACAATTCTTTGT+CGG | - | chr4_2:56635537-56635556 | Msa0609270:intron | 35.0% | |
| ! | GCTCTTGATAATCTGGATTT+CGG | + | chr4_2:56635581-56635600 | None:intergenic | 35.0% |
| ! | AATTTATGGTGTTAACCCTC+TGG | + | chr4_2:56635619-56635638 | None:intergenic | 35.0% |
| !! | GGGAGTTTTGATAGTTTACT+TGG | - | chr4_2:56635865-56635884 | Msa0609270:intron | 35.0% |
| AGATACATTCAAGAACCCAT+TGG | - | chr4_2:56635925-56635944 | Msa0609270:intron | 35.0% | |
| ATTCCTGTAACATCAGTAAC+TGG | + | chr4_2:56636076-56636095 | None:intergenic | 35.0% | |
| TGTATTGAACAATTCGACAC+TGG | - | chr4_2:56636199-56636218 | Msa0609270:intron | 35.0% | |
| TACATAGTCATGATTGGACA+TGG | - | chr4_2:56636229-56636248 | Msa0609270:intron | 35.0% | |
| CGATTAGGCTATTGTTATGA+AGG | - | chr4_2:56636354-56636373 | Msa0609270:intron | 35.0% | |
| AATACCTACCCTAAGTTTGA+CGG | + | chr4_2:56636835-56636854 | None:intergenic | 35.0% | |
| ACAACTCATGAGTTCGAAAT+CGG | + | chr4_2:56636914-56636933 | None:intergenic | 35.0% | |
| GAAGTGATACACCGTAAATT+TGG | - | chr4_2:56636950-56636969 | Msa0609270:intron | 35.0% | |
| TGTGAAAGTCTAAACGGTTA+TGG | + | chr4_2:56637082-56637101 | None:intergenic | 35.0% | |
| TCTGCTTGTGAAAGTCTAAA+CGG | + | chr4_2:56637088-56637107 | None:intergenic | 35.0% | |
| AGCTATGGAGGTGAAATTAA+CGG | + | chr4_2:56637139-56637158 | None:intergenic | 35.0% | |
| AATTTCACCTCCATAGCTAA+TGG | - | chr4_2:56637141-56637160 | Msa0609270:intron | 35.0% | |
| ATTTCACCTCCATAGCTAAT+GGG | - | chr4_2:56637142-56637161 | Msa0609270:intron | 35.0% | |
| AGTGCATTTCCTGCATATAT+TGG | + | chr4_2:56637401-56637420 | None:intergenic | 35.0% | |
| TGAAAGATCAACCTGAGATA+TGG | + | chr4_2:56637528-56637547 | None:intergenic | 35.0% | |
| GGCAAATTGAAAACACAAGT+AGG | - | chr4_2:56637602-56637621 | Msa0609270:intron | 35.0% | |
| ! | TATCTGTTGACTATAGATCC+TGG | - | chr4_2:56637644-56637663 | Msa0609270:intron | 35.0% |
| ATCAATGGATCATCTGTATC+AGG | - | chr4_2:56637682-56637701 | Msa0609270:intron | 35.0% | |
| TCAATGGATCATCTGTATCA+GGG | - | chr4_2:56637683-56637702 | Msa0609270:intron | 35.0% | |
| TCACATATTCAAGTCTGAAG+GGG | + | chr4_2:56637751-56637770 | None:intergenic | 35.0% | |
| GTTCACATATTCAAGTCTGA+AGG | + | chr4_2:56637753-56637772 | None:intergenic | 35.0% | |
| !!! | CTTCATTATTTTGGCAGATC+TGG | - | chr4_2:56637802-56637821 | Msa0609270:intron | 35.0% |
| AATGCACGAATTGTAGTTAC+TGG | - | chr4_2:56637881-56637900 | Msa0609270:intron | 35.0% | |
| GAAAATCTAGCCAAGAAACT+TGG | - | chr4_2:56637944-56637963 | Msa0609270:intron | 35.0% | |
| ! | ATGGCATGGAGAACATTTTA+AGG | - | chr4_2:56638086-56638105 | Msa0609270:intron | 35.0% |
| TTGCTTAAACAATGCCCTAA+GGG | + | chr4_2:56638128-56638147 | None:intergenic | 35.0% | |
| ATTGCTTAAACAATGCCCTA+AGG | + | chr4_2:56638129-56638148 | None:intergenic | 35.0% | |
| CATTATCTCCTTTGTTCAGT+TGG | - | chr4_2:56638388-56638407 | Msa0609270:CDS | 35.0% | |
| ! | ATTTGTTGCTAATGATCTCC+AGG | - | chr4_2:56638438-56638457 | Msa0609270:intron | 35.0% |
| GACAATTAGCAGCATAATCA+TGG | + | chr4_2:56638618-56638637 | None:intergenic | 35.0% | |
| ! | ATTTTCTGTCAAGTACAGCA+TGG | - | chr4_2:56638815-56638834 | Msa0609270:intron | 35.0% |
| TCAAATTAACCTCTAGCACA+AGG | + | chr4_2:56638982-56639001 | None:intergenic | 35.0% | |
| GACAAAATGGTTGGAATTGT+GGG | + | chr4_2:56639048-56639067 | None:intergenic | 35.0% | |
| TGACAAAATGGTTGGAATTG+TGG | + | chr4_2:56639049-56639068 | None:intergenic | 35.0% | |
| CGAACTTTAAGTATCTAGTC+AGG | + | chr4_2:56639136-56639155 | None:intergenic | 35.0% | |
| GATACTTAAAGTTCGTGCAA+TGG | - | chr4_2:56639141-56639160 | Msa0609270:intron | 35.0% | |
| TGCAATGGCATATCATTTGA+GGG | - | chr4_2:56639156-56639175 | Msa0609270:intron | 35.0% | |
| AACTAGGCCAAGAACTAAAA+TGG | + | chr4_2:56639228-56639247 | None:intergenic | 35.0% | |
| ACCAAAAGCCATATAGAGTT+CGG | + | chr4_2:56639323-56639342 | None:intergenic | 35.0% | |
| !! | TATATGGCTTTTGGTGTATC+TGG | - | chr4_2:56639328-56639347 | Msa0609270:CDS | 35.0% |
| GAGCTATTCAACATATAGCA+GGG | - | chr4_2:56639350-56639369 | Msa0609270:CDS | 35.0% | |
| ! | TACCTGAAATATAGGAGCAT+CGG | + | chr4_2:56639416-56639435 | None:intergenic | 35.0% |
| ATGGCAAATAAAGTAGAAGC+TGG | + | chr4_2:56639480-56639499 | None:intergenic | 35.0% | |
| GTAATTCAGCATATCACATG+AGG | + | chr4_2:56639525-56639544 | None:intergenic | 35.0% | |
| CATGTGATATGCTGAATTAC+AGG | - | chr4_2:56639525-56639544 | Msa0609270:CDS | 35.0% | |
| ! | GAATTACAGGTTGCTGATTA+TGG | - | chr4_2:56639538-56639557 | Msa0609270:CDS | 35.0% |
| TGGAACATTATACTACCAGA+AGG | - | chr4_2:56639742-56639761 | Msa0609270:five_prime_UTR | 35.0% | |
| ATAATGCAAAATGAGCCTTC+TGG | + | chr4_2:56639760-56639779 | None:intergenic | 35.0% | |
| ! | GTATTTTCTCTTCAGAGTGG+TGG | + | chr4_2:56634711-56634730 | None:intergenic | 40.0% |
| GTTTCTTAATTGCTCCTCTG+AGG | + | chr4_2:56634772-56634791 | None:intergenic | 40.0% | |
| AAAGGATGGAGGTAAGAAGA+AGG | + | chr4_2:56634798-56634817 | None:intergenic | 40.0% | |
| TTTCGAGAAGTGGAAAAGGA+TGG | + | chr4_2:56634812-56634831 | None:intergenic | 40.0% | |
| TACGTTTCGAGAAGTGGAAA+AGG | + | chr4_2:56634816-56634835 | None:intergenic | 40.0% | |
| ATCGATCCAATTCAGCAAAG+TGG | + | chr4_2:56634902-56634921 | None:intergenic | 40.0% | |
| GAATTGGATCGATGTAGTGT+AGG | - | chr4_2:56634909-56634928 | Msa0609270:intron | 40.0% | |
| GAAACAGAAGAGTCGTTGTT+AGG | + | chr4_2:56635018-56635037 | None:intergenic | 40.0% | |
| ! | TCTGTTTCTCTTCTCTTAGC+TGG | - | chr4_2:56635030-56635049 | Msa0609270:CDS | 40.0% |
| AAACGGTCCAGATTCAAACT+TGG | + | chr4_2:56635348-56635367 | None:intergenic | 40.0% | |
| CTAATAATGAGCTCCACCAA+AGG | - | chr4_2:56635482-56635501 | Msa0609270:intron | 40.0% | |
| AATCGAGTTCAATTCCTGAG+TGG | - | chr4_2:56635521-56635540 | Msa0609270:intron | 40.0% | |
| GACAAAGAATTGTTCCACTC+AGG | + | chr4_2:56635538-56635557 | None:intergenic | 40.0% | |
| GAGTGGAACAATTCTTTGTC+GGG | - | chr4_2:56635538-56635557 | Msa0609270:intron | 40.0% | |
| TAATCTGGATTTCGGTTGTG+AGG | + | chr4_2:56635573-56635592 | None:intergenic | 40.0% | |
| ! | AATGTAAGTTGAGAAAGGGG+TGG | - | chr4_2:56635797-56635816 | Msa0609270:intron | 40.0% |
| GTATCTGTGCAGATATGTGT+TGG | - | chr4_2:56635825-56635844 | Msa0609270:intron | 40.0% | |
| TGTGCAGATATGTGTTGGAA+GGG | - | chr4_2:56635830-56635849 | Msa0609270:intron | 40.0% | |
| !! | AAATGGACTAGTTTAGCCCA+GGG | + | chr4_2:56635956-56635975 | None:intergenic | 40.0% |
| TCTCCAGTTACTGATGTTAC+AGG | - | chr4_2:56636070-56636089 | Msa0609270:intron | 40.0% | |
| ! | AACAGAGGGTCTTGTCAAAT+AGG | + | chr4_2:56636299-56636318 | None:intergenic | 40.0% |
| ATTTGACAAGACCCTCTGTT+TGG | - | chr4_2:56636299-56636318 | Msa0609270:intron | 40.0% | |
| GTTGCAAAGCAAGAGATAGA+TGG | + | chr4_2:56636398-56636417 | None:intergenic | 40.0% | |
| ATGGAAAATCTCACTCCCTT+TGG | - | chr4_2:56636441-56636460 | Msa0609270:CDS | 40.0% | |
| AGCAGCGCAACTATAAATCT+AGG | - | chr4_2:56636620-56636639 | Msa0609270:intron | 40.0% | |
| ATACTAAAATTGTGGGCGAG+TGG | + | chr4_2:56636652-56636671 | None:intergenic | 40.0% | |
| ! | TTAGGGTAGGTATTGCTATC+AGG | - | chr4_2:56636841-56636860 | Msa0609270:CDS | 40.0% |
| CAAGATCTAGAAGCTAGCTA+TGG | + | chr4_2:56636876-56636895 | None:intergenic | 40.0% | |
| GAACTCATGAGTTGTGACTT+AGG | - | chr4_2:56636919-56636938 | Msa0609270:CDS | 40.0% | |
| TACTATCCCATTAGCTATGG+AGG | + | chr4_2:56637151-56637170 | None:intergenic | 40.0% | |
| !!! | TTATTGTTTTGGCAGCTGAC+TGG | - | chr4_2:56637262-56637281 | Msa0609270:intron | 40.0% |
| CTTTCTACAGTCCGATATAC+TGG | - | chr4_2:56637419-56637438 | Msa0609270:intron | 40.0% | |
| CTGAGAAACAGGAAAAGAAG+TGG | + | chr4_2:56637474-56637493 | None:intergenic | 40.0% | |
| TGATAAGGCTTCCATATCTC+AGG | - | chr4_2:56637514-56637533 | Msa0609270:intron | 40.0% | |
| GATCTTTCAACCTTTGACGA+AGG | - | chr4_2:56637539-56637558 | Msa0609270:intron | 40.0% | |
| GATAAACAGACCTTCGTCAA+AGG | + | chr4_2:56637552-56637571 | None:intergenic | 40.0% | |
| GATCTTTGTAGCATCAAACC+AGG | + | chr4_2:56637665-56637684 | None:intergenic | 40.0% | |
| ! | ATTCCAGTTCATTGATGGCA+TGG | - | chr4_2:56638072-56638091 | Msa0609270:intron | 40.0% |
| AAATGCTAACAAGTGCCCTT+AGG | - | chr4_2:56638110-56638129 | Msa0609270:intron | 40.0% | |
| AATGCTAACAAGTGCCCTTA+GGG | - | chr4_2:56638111-56638130 | Msa0609270:intron | 40.0% | |
| GTCCTTAAACAATGCCCTTA+GGG | - | chr4_2:56638239-56638258 | Msa0609270:CDS | 40.0% | |
| TGCTATCATGTGTTAAGGCA+TGG | + | chr4_2:56638302-56638321 | None:intergenic | 40.0% | |
| ATGTGTATTGTTTCATGGGG+TGG | + | chr4_2:56638494-56638513 | None:intergenic | 40.0% | |
| ! | GACTAGACTTTTTACATCCC+TGG | - | chr4_2:56638570-56638589 | Msa0609270:intron | 40.0% |
| CAGCATAATCATGGGAGAAA+CGG | + | chr4_2:56638609-56638628 | None:intergenic | 40.0% | |
| AACATCTGTGTGGAACAAAG+AGG | - | chr4_2:56638717-56638736 | Msa0609270:intron | 40.0% | |
| TCATACATAGCGATTGGACT+AGG | + | chr4_2:56638913-56638932 | None:intergenic | 40.0% | |
| TAGTCCAATCGCTATGTATG+AGG | - | chr4_2:56638912-56638931 | Msa0609270:intron | 40.0% | |
| TATGTATGAGGTCTGAGGAA+GGG | - | chr4_2:56638924-56638943 | Msa0609270:intron | 40.0% | |
| GAAGGGTTGGATATGATGTA+TGG | - | chr4_2:56638941-56638960 | Msa0609270:intron | 40.0% | |
| CAACTTGAATTTATGGCCCT+CGG | - | chr4_2:56639007-56639026 | Msa0609270:intron | 40.0% | |
| AGAAGGGATGTCTGACAAAA+TGG | + | chr4_2:56639061-56639080 | None:intergenic | 40.0% | |
| AAGTATCTAGTCAGGAAAGC+AGG | + | chr4_2:56639128-56639147 | None:intergenic | 40.0% | |
| GTGCAATGGCATATCATTTG+AGG | - | chr4_2:56639155-56639174 | Msa0609270:intron | 40.0% | |
| GATATGAAGGTTGGACAAAC+TGG | - | chr4_2:56639283-56639302 | Msa0609270:CDS | 40.0% | |
| CCAAAAGCCATATAGAGTTC+GGG | + | chr4_2:56639322-56639341 | None:intergenic | 40.0% | |
| GGAGCTATTCAACATATAGC+AGG | - | chr4_2:56639349-56639368 | Msa0609270:CDS | 40.0% | |
| TTCAACATATAGCAGGGATG+AGG | - | chr4_2:56639356-56639375 | Msa0609270:CDS | 40.0% | |
| TCAACATATAGCAGGGATGA+GGG | - | chr4_2:56639357-56639376 | Msa0609270:CDS | 40.0% | |
| GTTCACAGCAACAATGACTT+TGG | + | chr4_2:56639386-56639405 | None:intergenic | 40.0% | |
| AACTGTTTCAGGATTGCTCA+TGG | + | chr4_2:56639499-56639518 | None:intergenic | 40.0% | |
| ACATGAGGCAAAACTGTTTC+AGG | + | chr4_2:56639510-56639529 | None:intergenic | 40.0% | |
| ACTCGTAGGAGATTTATTCG+AGG | - | chr4_2:56639561-56639580 | Msa0609270:CDS | 40.0% | |
| TTTCTCTTCAGAGTGGTGGT+TGG | + | chr4_2:56634707-56634726 | None:intergenic | 45.0% | |
| GAAGCAGCTTGATGAAGAGA+AGG | + | chr4_2:56635063-56635082 | None:intergenic | 45.0% | |
| GAGTTACCTGAGAGATGGAA+GGG | + | chr4_2:56635104-56635123 | None:intergenic | 45.0% | |
| TGAGTTACCTGAGAGATGGA+AGG | + | chr4_2:56635105-56635124 | None:intergenic | 45.0% | |
| TGAGTGAGTTACCTGAGAGA+TGG | + | chr4_2:56635109-56635128 | None:intergenic | 45.0% | |
| AGACATGATTGTAAGGGAGC+TGG | - | chr4_2:56635415-56635434 | Msa0609270:intron | 45.0% | |
| ATGATTGTAAGGGAGCTGGA+TGG | - | chr4_2:56635419-56635438 | Msa0609270:intron | 45.0% | |
| TGATTGTAAGGGAGCTGGAT+GGG | - | chr4_2:56635420-56635439 | Msa0609270:intron | 45.0% | |
| ! | TGTTAACCCTCTGGTTCCTA+GGG | + | chr4_2:56635610-56635629 | None:intergenic | 45.0% |
| CTGTGCAGATATGTGTTGGA+AGG | - | chr4_2:56635829-56635848 | Msa0609270:intron | 45.0% | |
| ! | TTACTTGGGTATGCTGCTTG+TGG | - | chr4_2:56635880-56635899 | Msa0609270:intron | 45.0% |
| !! | CAAATGGACTAGTTTAGCCC+AGG | + | chr4_2:56635957-56635976 | None:intergenic | 45.0% |
| CTGGGCTAAACTAGTCCATT+TGG | - | chr4_2:56635955-56635974 | Msa0609270:intron | 45.0% | |
| ! | GTCCATTTGGTTCAGCAAAG+AGG | - | chr4_2:56635968-56635987 | Msa0609270:intron | 45.0% |
| CACCTCTTTGCTGAACCAAA+TGG | + | chr4_2:56635973-56635992 | None:intergenic | 45.0% | |
| ! | CATTTGGTTCAGCAAAGAGG+TGG | - | chr4_2:56635971-56635990 | Msa0609270:intron | 45.0% |
| ACTGAGCAAATTCTGTGCTG+TGG | - | chr4_2:56636265-56636284 | Msa0609270:intron | 45.0% | |
| CTCAAACAGTCCAGGTTTAC+AGG | + | chr4_2:56636805-56636824 | None:intergenic | 45.0% | |
| CTGTAAACCTGGACTGTTTG+AGG | - | chr4_2:56636803-56636822 | Msa0609270:CDS | 45.0% | |
| AGGACCTATCCGTCAAACTT+AGG | - | chr4_2:56636823-56636842 | Msa0609270:CDS | 45.0% | |
| GGACCTATCCGTCAAACTTA+GGG | - | chr4_2:56636824-56636843 | Msa0609270:CDS | 45.0% | |
| ! | CTACCCTAAGTTTGACGGAT+AGG | + | chr4_2:56636830-56636849 | None:intergenic | 45.0% |
| CTATCCGTCAAACTTAGGGT+AGG | - | chr4_2:56636828-56636847 | Msa0609270:CDS | 45.0% | |
| CATGAGTTGTGACTTAGGTG+AGG | - | chr4_2:56636924-56636943 | Msa0609270:CDS | 45.0% | |
| TCACACAGGCCAATATATGC+AGG | - | chr4_2:56637389-56637408 | Msa0609270:intron | 45.0% | |
| ! | AAGGACTGGCACCAGTATAT+CGG | + | chr4_2:56637433-56637452 | None:intergenic | 45.0% |
| ! | TCAACAGGCTTCTGAGAAAC+AGG | + | chr4_2:56637485-56637504 | None:intergenic | 45.0% |
| CTACAATTCGTGCATTCCCA+AGG | + | chr4_2:56637877-56637896 | None:intergenic | 45.0% | |
| GCACGAATTGTAGTTACTGG+TGG | - | chr4_2:56637884-56637903 | Msa0609270:intron | 45.0% | |
| TCTCCATGCCATCAATGAAC+TGG | + | chr4_2:56638078-56638097 | None:intergenic | 45.0% | |
| GGTCCTTAAACAATGCCCTT+AGG | - | chr4_2:56638238-56638257 | Msa0609270:CDS | 45.0% | |
| !! | TGCCCTAAGGGCATTGTTTA+AGG | + | chr4_2:56638244-56638263 | None:intergenic | 45.0% |
| GAGTAGCACCAACTGAACAA+AGG | + | chr4_2:56638399-56638418 | None:intergenic | 45.0% | |
| ! | CTTTTTACATCCCTGGCTAC+TGG | - | chr4_2:56638577-56638596 | Msa0609270:intron | 45.0% |
| CAGACCTCATACATAGCGAT+TGG | + | chr4_2:56638919-56638938 | None:intergenic | 45.0% | |
| ATCGCTATGTATGAGGTCTG+AGG | - | chr4_2:56638919-56638938 | Msa0609270:intron | 45.0% | |
| CTATGTATGAGGTCTGAGGA+AGG | - | chr4_2:56638923-56638942 | Msa0609270:intron | 45.0% | |
| !! | ATTAGGTAGCCTTGTGCTAG+AGG | - | chr4_2:56638970-56638989 | Msa0609270:intron | 45.0% |
| TTTATGGCCCTCGGATTTAG+TGG | - | chr4_2:56639016-56639035 | Msa0609270:intron | 45.0% | |
| GGGATGTCTGACAAAATGGT+TGG | + | chr4_2:56639057-56639076 | None:intergenic | 45.0% | |
| TGTTGCTCCCGAACTCTATA+TGG | - | chr4_2:56639312-56639331 | Msa0609270:CDS | 45.0% | |
| ! | CCCGAACTCTATATGGCTTT+TGG | - | chr4_2:56639319-56639338 | Msa0609270:CDS | 45.0% |
| TGCCGATGCTCCTATATTTC+AGG | - | chr4_2:56639411-56639430 | Msa0609270:intron | 45.0% | |
| ! | GTTGCTGATTATGGACTCGT+AGG | - | chr4_2:56639547-56639566 | Msa0609270:CDS | 45.0% |
| ! | GGAAGCTTTTCCAACAACTC+TGG | + | chr4_2:56639592-56639611 | None:intergenic | 45.0% |
| TCCATTTGCGACTTGCGAGT+AGG | + | chr4_2:56634577-56634596 | None:intergenic | 50.0% | |
| CGAGAAGTGGAAAAGGATGG+AGG | + | chr4_2:56634809-56634828 | None:intergenic | 50.0% | |
| GGAGAGAGAAGGAGGTTTGA+TGG | + | chr4_2:56634971-56634990 | None:intergenic | 50.0% | |
| GTTGTTAGGAAGACACGTGG+CGG | + | chr4_2:56635004-56635023 | None:intergenic | 50.0% | |
| GTCGTTGTTAGGAAGACACG+TGG | + | chr4_2:56635007-56635026 | None:intergenic | 50.0% | |
| ! | TCTCTTCTCTTAGCTGGCTC+TGG | - | chr4_2:56635036-56635055 | Msa0609270:CDS | 50.0% |
| TACCTGAGAGATGGAAGGGT+GGG | + | chr4_2:56635100-56635119 | None:intergenic | 50.0% | |
| TTACCTGAGAGATGGAAGGG+TGG | + | chr4_2:56635101-56635120 | None:intergenic | 50.0% | |
| ! | TGCGTGTGAGTTTTGCCACT+AGG | - | chr4_2:56635197-56635216 | Msa0609270:intron | 50.0% |
| GATTGTAAGGGAGCTGGATG+GGG | - | chr4_2:56635421-56635440 | Msa0609270:intron | 50.0% | |
| CTGAACGATTCGTCCTTTGG+TGG | + | chr4_2:56635498-56635517 | None:intergenic | 50.0% | |
| CACCAAAGGACGAATCGTTC+AGG | - | chr4_2:56635496-56635515 | Msa0609270:intron | 50.0% | |
| CTCCTGAACGATTCGTCCTT+TGG | + | chr4_2:56635501-56635520 | None:intergenic | 50.0% | |
| ! | GGAAGGGGCTCTTGATAATC+TGG | + | chr4_2:56635588-56635607 | None:intergenic | 50.0% |
| ! | GTTAACCCTCTGGTTCCTAG+GGG | + | chr4_2:56635609-56635628 | None:intergenic | 50.0% |
| ! | GTGTTAACCCTCTGGTTCCT+AGG | + | chr4_2:56635611-56635630 | None:intergenic | 50.0% |
| TCTAAAAGAGCAGCAGCACG+CGG | + | chr4_2:56636046-56636065 | None:intergenic | 50.0% | |
| CTTCGGAGACACAGTCCAAA+GGG | + | chr4_2:56636459-56636478 | None:intergenic | 50.0% | |
| TCTTCGGAGACACAGTCCAA+AGG | + | chr4_2:56636460-56636479 | None:intergenic | 50.0% | |
| GATAGGTCCTCAAACAGTCC+AGG | + | chr4_2:56636813-56636832 | None:intergenic | 50.0% | |
| TGGCAGATCTGGACAAGTCT+AGG | - | chr4_2:56637813-56637832 | Msa0609270:intron | 50.0% | |
| CAAACTTCTCGGGATGACGA+AGG | - | chr4_2:56637845-56637864 | Msa0609270:intron | 50.0% | |
| ATGACGAAGGACCAGACCTT+GGG | - | chr4_2:56637858-56637877 | Msa0609270:intron | 50.0% | |
| ATTCGTGCATTCCCAAGGTC+TGG | + | chr4_2:56637872-56637891 | None:intergenic | 50.0% | |
| ACCAGCAGCACCAAGTTTCT+TGG | + | chr4_2:56637957-56637976 | None:intergenic | 50.0% | |
| CATGCTAGCAAGTGCCCTAA+GGG | + | chr4_2:56638256-56638275 | None:intergenic | 50.0% | |
| TCATGCTAGCAAGTGCCCTA+AGG | + | chr4_2:56638257-56638276 | None:intergenic | 50.0% | |
| TATGAGGTCTGAGGAAGGGT+TGG | - | chr4_2:56638928-56638947 | Msa0609270:intron | 50.0% | |
| ! | ATGGTTGGAATTGTGGGCTG+TGG | + | chr4_2:56639042-56639061 | None:intergenic | 50.0% |
| GCCTACTCGCAAGTCGCAAA+TGG | - | chr4_2:56634573-56634592 | Msa0609270:three_prime_UTR | 55.0% | |
| CTCTTCAGAGTGGTGGTTGG+TGG | + | chr4_2:56634704-56634723 | None:intergenic | 55.0% | |
| AGGATCATGCGAGTCGCCAT+TGG | + | chr4_2:56634752-56634771 | None:intergenic | 55.0% | |
| GGGTAGCACTCTTGTCATCG+CGG | - | chr4_2:56634930-56634949 | Msa0609270:CDS | 55.0% | |
| GTCATCGCGGAGCACGAAAA+CGG | - | chr4_2:56634943-56634962 | Msa0609270:CDS | 55.0% | |
| TATCAAGAGCCCCTTCCCCT+AGG | - | chr4_2:56635591-56635610 | Msa0609270:intron | 55.0% | |
| ! | GGGTATGCTGCTTGTGGTGT+AGG | - | chr4_2:56635886-56635905 | Msa0609270:intron | 55.0% |
| AGAACCCATTGGCAGAACCC+TGG | - | chr4_2:56635936-56635955 | Msa0609270:intron | 55.0% | |
| GAACCCATTGGCAGAACCCT+GGG | - | chr4_2:56635937-56635956 | Msa0609270:intron | 55.0% | |
| TAGCCCAGGGTTCTGCCAAT+GGG | + | chr4_2:56635943-56635962 | None:intergenic | 55.0% | |
| TTAGCCCAGGGTTCTGCCAA+TGG | + | chr4_2:56635944-56635963 | None:intergenic | 55.0% | |
| GATGACGAAGGACCAGACCT+TGG | - | chr4_2:56637857-56637876 | Msa0609270:intron | 55.0% | |
| !! | GCCAAGAAACTTGGTGCTGC+TGG | - | chr4_2:56637953-56637972 | Msa0609270:intron | 55.0% |
| ! | ACTCGTGCTGCTGTTGATGC+AGG | - | chr4_2:56638415-56638434 | Msa0609270:CDS | 55.0% |
| ACGGAGTACACCAGTAGCCA+GGG | + | chr4_2:56638590-56638609 | None:intergenic | 55.0% | |
| AACGGAGTACACCAGTAGCC+AGG | + | chr4_2:56638591-56638610 | None:intergenic | 55.0% | |
| GCTGTGGCCACTAAATCCGA+GGG | + | chr4_2:56639026-56639045 | None:intergenic | 55.0% | |
| ! | CGAGGTGCTACCAGAGTTGT+TGG | - | chr4_2:56639579-56639598 | Msa0609270:exon | 55.0% |
| TTGCGAGTAGGCAGCTGCCA+TGG | + | chr4_2:56634565-56634584 | None:intergenic | 60.0% | |
| GCGACTCGCATGATCCTCAG+AGG | - | chr4_2:56634755-56634774 | Msa0609270:CDS | 60.0% | |
| TGGAGTGCGGAGAGAGAAGG+AGG | + | chr4_2:56634979-56634998 | None:intergenic | 60.0% | |
| CTGAGAGATGGAAGGGTGGG+AGG | + | chr4_2:56635097-56635116 | None:intergenic | 60.0% | |
| CTCCCACCCTTCCATCTCTC+AGG | - | chr4_2:56635095-56635114 | Msa0609270:intron | 60.0% | |
| ! | CCTCTGGTTCCTAGGGGAAG+GGG | + | chr4_2:56635603-56635622 | None:intergenic | 60.0% |
| ! | CCCTCTGGTTCCTAGGGGAA+GGG | + | chr4_2:56635604-56635623 | None:intergenic | 60.0% |
| CCCTTCCCCTAGGAACCAGA+GGG | - | chr4_2:56635601-56635620 | Msa0609270:intron | 60.0% | |
| ! | ACCCTCTGGTTCCTAGGGGA+AGG | + | chr4_2:56635605-56635624 | None:intergenic | 60.0% |
| GCTTGTGGTGTAGGTGCTCG+TGG | - | chr4_2:56635895-56635914 | Msa0609270:CDS | 60.0% | |
| TGTGGTGTAGGTGCTCGTGG+CGG | - | chr4_2:56635898-56635917 | Msa0609270:CDS | 60.0% | |
| GGCTGTGGCCACTAAATCCG+AGG | + | chr4_2:56639027-56639046 | None:intergenic | 60.0% | |
| GCGTGGAGTGCGGAGAGAGA+AGG | + | chr4_2:56634982-56635001 | None:intergenic | 65.0% | |
| TAGGAAGACACGTGGCGGCG+TGG | + | chr4_2:56634999-56635018 | None:intergenic | 65.0% | |
| CCCCTTCCCCTAGGAACCAG+AGG | - | chr4_2:56635600-56635619 | Msa0609270:intron | 65.0% | |
| ACACGTGGCGGCGTGGAGTG+CGG | + | chr4_2:56634992-56635011 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 56634552 | 56639797 | 56634552 | ID=Msa0609270;Name=Msa0609270 |
| chr4_2 | mRNA | 56634552 | 56639797 | 56634552 | ID=Msa0609270-mRNA-1;Parent=Msa0609270;Name=Msa0609270-mRNA-1;_AED=0.14;_eAED=0.14;_QI=175|1|1|1|0.87|0.77|9|173|356 |
| chr4_2 | exon | 56634552 | 56634802 | 56634552 | ID=Msa0609270-mRNA-1:exon:14643;Parent=Msa0609270-mRNA-1 |
| chr4_2 | exon | 56634917 | 56635057 | 56634917 | ID=Msa0609270-mRNA-1:exon:14642;Parent=Msa0609270-mRNA-1 |
| chr4_2 | exon | 56635890 | 56635942 | 56635890 | ID=Msa0609270-mRNA-1:exon:14641;Parent=Msa0609270-mRNA-1 |
| chr4_2 | exon | 56636375 | 56636530 | 56636375 | ID=Msa0609270-mRNA-1:exon:14640;Parent=Msa0609270-mRNA-1 |
| chr4_2 | exon | 56636789 | 56636952 | 56636789 | ID=Msa0609270-mRNA-1:exon:14639;Parent=Msa0609270-mRNA-1 |
| chr4_2 | exon | 56638230 | 56638441 | 56638230 | ID=Msa0609270-mRNA-1:exon:14638;Parent=Msa0609270-mRNA-1 |
| chr4_2 | exon | 56639233 | 56639418 | 56639233 | ID=Msa0609270-mRNA-1:exon:14637;Parent=Msa0609270-mRNA-1 |
| chr4_2 | exon | 56639517 | 56639627 | 56639517 | ID=Msa0609270-mRNA-1:exon:14636;Parent=Msa0609270-mRNA-1 |
| chr4_2 | exon | 56639653 | 56639797 | 56639653 | ID=Msa0609270-mRNA-1:exon:14635;Parent=Msa0609270-mRNA-1 |
| chr4_2 | five_prime_UTR | 56639653 | 56639797 | 56639653 | ID=Msa0609270-mRNA-1:five_prime_utr;Parent=Msa0609270-mRNA-1 |
| chr4_2 | five_prime_UTR | 56639598 | 56639627 | 56639598 | ID=Msa0609270-mRNA-1:five_prime_utr;Parent=Msa0609270-mRNA-1 |
| chr4_2 | CDS | 56639517 | 56639597 | 56639517 | ID=Msa0609270-mRNA-1:cds;Parent=Msa0609270-mRNA-1 |
| chr4_2 | CDS | 56639233 | 56639418 | 56639233 | ID=Msa0609270-mRNA-1:cds;Parent=Msa0609270-mRNA-1 |
| chr4_2 | CDS | 56638230 | 56638441 | 56638230 | ID=Msa0609270-mRNA-1:cds;Parent=Msa0609270-mRNA-1 |
| chr4_2 | CDS | 56636789 | 56636952 | 56636789 | ID=Msa0609270-mRNA-1:cds;Parent=Msa0609270-mRNA-1 |
| chr4_2 | CDS | 56636375 | 56636530 | 56636375 | ID=Msa0609270-mRNA-1:cds;Parent=Msa0609270-mRNA-1 |
| chr4_2 | CDS | 56635890 | 56635942 | 56635890 | ID=Msa0609270-mRNA-1:cds;Parent=Msa0609270-mRNA-1 |
| chr4_2 | CDS | 56634917 | 56635057 | 56634917 | ID=Msa0609270-mRNA-1:cds;Parent=Msa0609270-mRNA-1 |
| chr4_2 | CDS | 56634725 | 56634802 | 56634725 | ID=Msa0609270-mRNA-1:cds;Parent=Msa0609270-mRNA-1 |
| chr4_2 | three_prime_UTR | 56634552 | 56634724 | 56634552 | ID=Msa0609270-mRNA-1:three_prime_utr;Parent=Msa0609270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
