Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0692490 | XP_013456758.1 | 86.923 | 390 | 18 | 2 | 1 | 390 | 1 | 357 | 0.0 | 579 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0692490 | A0A072ULX9 | 86.923 | 390 | 18 | 2 | 1 | 390 | 1 | 357 | 0.0 | 579 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0610000 | Msa0692490 | 0.807177 | 5.740749e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0692490 | MtrunA17_Chr4g0042691 | 86.923 | 390 | 18 | 2 | 1 | 390 | 1 | 357 | 0.0 | 579 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0692490 | AT1G14060.1 | 49.580 | 119 | 39 | 3 | 4 | 105 | 26 | 140 | 2.94e-27 | 107 |
| Msa0692490 | AT1G14060.1 | 69.492 | 59 | 18 | 0 | 306 | 364 | 82 | 140 | 4.01e-26 | 103 |
| Msa0692490 | AT1G14060.1 | 46.667 | 90 | 48 | 0 | 150 | 239 | 51 | 140 | 1.19e-18 | 83.6 |
| Msa0692490 | AT5G02210.1 | 47.191 | 89 | 44 | 1 | 34 | 119 | 65 | 153 | 8.53e-18 | 80.5 |
| Msa0692490 | AT5G02210.1 | 50.000 | 78 | 30 | 4 | 308 | 381 | 80 | 152 | 2.67e-14 | 70.5 |
| Msa0692490 | AT5G02210.1 | 40.541 | 74 | 41 | 1 | 177 | 247 | 74 | 147 | 5.98e-11 | 61.2 |
| Msa0692490 | AT5G57570.1 | 54.545 | 66 | 29 | 1 | 47 | 111 | 53 | 118 | 3.43e-14 | 69.7 |
| Msa0692490 | AT5G57640.1 | 48.438 | 64 | 33 | 0 | 304 | 367 | 82 | 145 | 5.93e-14 | 71.2 |
| Msa0692490 | AT5G57640.1 | 45.333 | 75 | 41 | 0 | 45 | 119 | 82 | 156 | 2.07e-13 | 69.7 |
Find 134 sgRNAs with CRISPR-Local
Find 255 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGCCTTCGGCGGCGGTTTC+TGG | 0.056859 | 4_4:+61039568 | None:intergenic |
| ATTATTATGAACCCATTCTT+AGG | 0.179261 | 4_4:-61039366 | Msa0692490:CDS |
| CACTCGTTTGTTGCAGTGTA+TGG | 0.222714 | 4_4:-61038034 | Msa0692490:CDS |
| GGCTTCCTGTTATTTGTTAC+TGG | 0.225860 | 4_4:+61036622 | None:intergenic |
| TGATGGTTTGGCATCGGATT+TGG | 0.227434 | 4_4:+61039630 | None:intergenic |
| GATGGTTTGGCATCGGATTT+GGG | 0.232683 | 4_4:+61039631 | None:intergenic |
| TCCTCTTCGCCTTCTGCTTT+CGG | 0.242262 | 4_4:+61036902 | None:intergenic |
| GGGTTCTGCCTGTTCATTAA+AGG | 0.259132 | 4_4:-61038153 | Msa0692490:CDS |
| TTTAAATAGGTGTTATGAAT+TGG | 0.263964 | 4_4:+61036486 | None:intergenic |
| CTCGGCGGTGGCGGCGGCGG+CGG | 0.273906 | 4_4:+61039282 | None:intergenic |
| TCGGCGGCGGTTTCTGGTTC+GGG | 0.299995 | 4_4:+61039574 | None:intergenic |
| TTCGGCGGCGGTTTCTGGTT+CGG | 0.312231 | 4_4:+61039573 | None:intergenic |
| GACTCCGGCGGTGGTTGATT+GGG | 0.313168 | 4_4:+61039598 | None:intergenic |
| GATTCTCATTCCGATTACTA+TGG | 0.325236 | 4_4:-61036722 | Msa0692490:CDS |
| CGACCGTGAGTTGGAGTCTA+AGG | 0.345428 | 4_4:-61037014 | Msa0692490:CDS |
| CGCTTCTCGGTCTTGATGAT+GGG | 0.346732 | 4_4:+61037988 | None:intergenic |
| AGACTCCGGCGGTGGTTGAT+TGG | 0.352923 | 4_4:+61039597 | None:intergenic |
| GCGCTTCTCGGTCTTGATGA+TGG | 0.357410 | 4_4:+61037987 | None:intergenic |
| GGAGAAAGAAAAGCAGGATT+TGG | 0.362471 | 4_4:-61039305 | Msa0692490:CDS |
| TTCTTCATCTTCCTCGCCTT+CGG | 0.365927 | 4_4:+61039555 | None:intergenic |
| TGGCTCTTCGACGCGCTTCT+CGG | 0.370604 | 4_4:+61037975 | None:intergenic |
| GCCTCCACAGCTGCTTGATC+AGG | 0.377475 | 4_4:+61036926 | None:intergenic |
| GATGATGGGTTTGTAGTAAT+CGG | 0.384814 | 4_4:+61038002 | None:intergenic |
| AGGGGATTCTTGTTGATTCT+CGG | 0.385534 | 4_4:+61039264 | None:intergenic |
| AGAGCAGGTTACCATTGAAT+TGG | 0.397436 | 4_4:-61039326 | Msa0692490:CDS |
| ATTCTCGGCGGTGGCGGCGG+CGG | 0.403836 | 4_4:+61039279 | None:intergenic |
| AGTAACCAGTAACAAATAAC+AGG | 0.410673 | 4_4:-61036627 | Msa0692490:exon |
| AACCGCCTCCTTTCATGAAT+AGG | 0.411096 | 4_4:+61039512 | None:intergenic |
| ATGCTTCTCCGCCCTAAGAA+TGG | 0.411420 | 4_4:+61039354 | None:intergenic |
| GCAGAGACACCTTGGTTGAA+TGG | 0.415028 | 4_4:-61038122 | Msa0692490:CDS |
| ATCTTCCTCGCCTTCGGCGG+CGG | 0.416651 | 4_4:+61039561 | None:intergenic |
| AACCGTCTCCTTTAATGAAC+AGG | 0.424322 | 4_4:+61038145 | None:intergenic |
| ACCTCGCTGAAAAGTGCTCT+GGG | 0.429532 | 4_4:-61038062 | Msa0692490:CDS |
| GCAAAGACACGTTCATCGCT+TGG | 0.430395 | 4_4:-61039489 | Msa0692490:CDS |
| GACCTCGCTGAAAAGTGCTC+TGG | 0.431197 | 4_4:-61038063 | Msa0692490:CDS |
| GGGAAGAGGATCTGATGGTT+TGG | 0.434881 | 4_4:+61039618 | None:intergenic |
| CGAAAAGGAGCAACCAGCTC+CGG | 0.436481 | 4_4:-61038217 | Msa0692490:CDS |
| GCCTTCGTAGCCTCCGGAGC+TGG | 0.437486 | 4_4:+61038204 | None:intergenic |
| CAGAGACACCTTGGTTGAAT+GGG | 0.446480 | 4_4:-61038121 | Msa0692490:CDS |
| CAGAGACACCTTCGTCGATT+GGG | 0.447393 | 4_4:-61036831 | Msa0692490:CDS |
| TGCTTCTCCGCCCTAAGAAT+GGG | 0.453023 | 4_4:+61039355 | None:intergenic |
| CAAAGACACGTTCATCGCTT+GGG | 0.455392 | 4_4:-61039488 | Msa0692490:CDS |
| TTATTATGAACCCATTCTTA+GGG | 0.456966 | 4_4:-61039365 | Msa0692490:CDS |
| GAGGATGGGTCCATAGTAAT+CGG | 0.458594 | 4_4:+61036712 | None:intergenic |
| TTGATTCTCGGCGGTGGCGG+CGG | 0.458622 | 4_4:+61039276 | None:intergenic |
| GCCCTCAAAGCAAGCCGAAA+AGG | 0.458652 | 4_4:-61038232 | Msa0692490:CDS |
| TAGGTGTTATGAATTGGAAT+AGG | 0.458703 | 4_4:+61036492 | None:intergenic |
| GCAGAGACACCTTCGTCGAT+TGG | 0.467963 | 4_4:-61036832 | Msa0692490:CDS |
| GGGTTTGTAGTAATCGGAAC+TGG | 0.476444 | 4_4:+61038008 | None:intergenic |
| TGCAAAATTGAAGCAGTGTA+TGG | 0.476710 | 4_4:-61039401 | Msa0692490:CDS |
| ACTCGTTTGTTGCAGTGTAT+GGG | 0.481333 | 4_4:-61038033 | Msa0692490:CDS |
| GGCCGAAAACAAAGAGGAGG+AGG | 0.485890 | 4_4:-61038184 | Msa0692490:CDS |
| GCAGTGTATGGATGAACATT+CGG | 0.489367 | 4_4:-61039389 | Msa0692490:CDS |
| GAAGGCGAAGAGGAGGAAGA+AGG | 0.494264 | 4_4:-61036893 | Msa0692490:CDS |
| AGAACAAGCCGCCATCGACT+TGG | 0.501554 | 4_4:-61036669 | Msa0692490:CDS |
| CACATTTGATTAGAATGAGA+AGG | 0.505801 | 4_4:+61037949 | None:intergenic |
| GGTTCGGGAGACTCCGGCGG+TGG | 0.508162 | 4_4:+61039589 | None:intergenic |
| TCCTGATCAAGCAGCTGTGG+AGG | 0.510427 | 4_4:-61036927 | Msa0692490:CDS |
| TGCTTCTCAGCCATGAGGAT+GGG | 0.510615 | 4_4:+61036698 | None:intergenic |
| TAACTTTGTATGAGAGAAAG+AGG | 0.511684 | 4_4:-61036449 | Msa0692490:three_prime_UTR |
| TGAATTGGAGAAAGAAAAGC+AGG | 0.511809 | 4_4:-61039311 | Msa0692490:CDS |
| GTTTCTGGTTCGGGAGACTC+CGG | 0.518475 | 4_4:+61039583 | None:intergenic |
| ACTTCTGATTAGAATGAGAA+GGG | 0.520091 | 4_4:+61036600 | None:intergenic |
| AGAAACCGCCGCCGAAGGCG+AGG | 0.522261 | 4_4:-61039566 | Msa0692490:CDS |
| GAACCAGAAACCGCCGCCGA+AGG | 0.523723 | 4_4:-61039571 | Msa0692490:CDS |
| TTGTTGATTCTCGGCGGTGG+CGG | 0.528626 | 4_4:+61039273 | None:intergenic |
| TGTATGAGAGAAAGAGGGTC+TGG | 0.529465 | 4_4:-61036443 | Msa0692490:three_prime_UTR |
| CCGAAAACAAAGAGGAGGAG+GGG | 0.530892 | 4_4:-61038182 | Msa0692490:CDS |
| TGCCTGTTCATTAAAGGAGA+CGG | 0.531952 | 4_4:-61038147 | Msa0692490:CDS |
| ACATTTGATTAGAATGAGAA+GGG | 0.532264 | 4_4:+61037950 | None:intergenic |
| GAAAGCAGAAGGCGAAGAGG+AGG | 0.535433 | 4_4:-61036900 | Msa0692490:CDS |
| CGTCGTTCAAAAGTGCTCTC+AGG | 0.535919 | 4_4:-61036771 | Msa0692490:CDS |
| CATACACTGTTTCAAAAGAT+CGG | 0.536650 | 4_4:+61036745 | None:intergenic |
| TGATTAGAATGAGAAGGGGC+TGG | 0.538524 | 4_4:+61037955 | None:intergenic |
| GGCGAGGAAGATGAAGAAGA+AGG | 0.541499 | 4_4:-61039550 | Msa0692490:CDS |
| TTCTCCTGATCAAGCAGCTG+TGG | 0.544927 | 4_4:-61036930 | Msa0692490:CDS |
| TTGGGAGAACTGCATGGATG+AGG | 0.546606 | 4_4:-61036813 | Msa0692490:CDS |
| GGCGGTGGTTGATTGGGAAG+AGG | 0.546771 | 4_4:+61039604 | None:intergenic |
| TTCTTTCTCCAAGTCGATGG+CGG | 0.550499 | 4_4:+61036661 | None:intergenic |
| ATAGAGTAAGGAACAAGGCA+AGG | 0.551902 | 4_4:-61039740 | None:intergenic |
| GCCGAAAACAAAGAGGAGGA+GGG | 0.552949 | 4_4:-61038183 | Msa0692490:CDS |
| ACCAGCTCCGGAGGCTACGA+AGG | 0.553191 | 4_4:-61038205 | Msa0692490:CDS |
| GTGTTATGAATTGGAATAGG+TGG | 0.553552 | 4_4:+61036495 | None:intergenic |
| AGGATCTGATGGTTTGGCAT+CGG | 0.555085 | 4_4:+61039624 | None:intergenic |
| TGCCTATTCATGAAAGGAGG+CGG | 0.555309 | 4_4:-61039514 | Msa0692490:CDS |
| AGGAGGAAGAAGGTGAGTGC+GGG | 0.557082 | 4_4:-61036883 | Msa0692490:CDS |
| CACTTCTGATTAGAATGAGA+AGG | 0.557234 | 4_4:+61036599 | None:intergenic |
| TTCTTGTTGATTCTCGGCGG+TGG | 0.557772 | 4_4:+61039270 | None:intergenic |
| GTGCTTCTCAGCCATGAGGA+TGG | 0.557993 | 4_4:+61036697 | None:intergenic |
| TGATTGGGAAGAGGATCTGA+TGG | 0.558958 | 4_4:+61039613 | None:intergenic |
| CGAAAACAAAGAGGAGGAGG+GGG | 0.568503 | 4_4:-61038181 | Msa0692490:CDS |
| GAATTGTGTGAAAGAGGCGA+AGG | 0.570129 | 4_4:-61038097 | Msa0692490:CDS |
| GGAGAAGCATGCTGAAGAGC+AGG | 0.570146 | 4_4:-61039341 | Msa0692490:CDS |
| GTGGAGGCTCCGAAAGCAGA+AGG | 0.573231 | 4_4:-61036911 | Msa0692490:CDS |
| TGCGTGTTCATGAAAGGAGG+TGG | 0.574556 | 4_4:-61036857 | Msa0692490:CDS |
| GGGTTCTGCGTGTTCATGAA+AGG | 0.574588 | 4_4:-61036863 | Msa0692490:CDS |
| GAGGAGGAAGAAGGTGAGTG+CGG | 0.578095 | 4_4:-61036884 | Msa0692490:CDS |
| AGAGGCGAAGGAGAAGAAAG+AGG | 0.580829 | 4_4:-61038085 | Msa0692490:CDS |
| AGACGGTTGCAGAGACACCT+TGG | 0.584640 | 4_4:-61038130 | Msa0692490:CDS |
| GGACTGCAGCGACCGTGAGT+TGG | 0.586739 | 4_4:-61037023 | Msa0692490:intron |
| GAACCGCAGTGACCGTGAGT+TGG | 0.587819 | 4_4:-61038274 | Msa0692490:intron |
| TTCATCTTCCTCGCCTTCGG+CGG | 0.591064 | 4_4:+61039558 | None:intergenic |
| TGACCGTGAGTTGGAGTCAA+CGG | 0.592923 | 4_4:-61038265 | Msa0692490:CDS |
| TTACTATGGACCCATCCTCA+TGG | 0.594348 | 4_4:-61036708 | Msa0692490:CDS |
| TCTGGTTCGGGAGACTCCGG+CGG | 0.595289 | 4_4:+61039586 | None:intergenic |
| CGTCGATTGGGAGAACTGCA+TGG | 0.595914 | 4_4:-61036819 | Msa0692490:CDS |
| GATGAAGAAGAAGGAGAATG+CGG | 0.600982 | 4_4:-61039541 | Msa0692490:CDS |
| TCTTCCCAATCAACCACCGC+CGG | 0.612871 | 4_4:-61039602 | Msa0692490:CDS |
| ATGGGAGAATTGTGTGAAAG+AGG | 0.614008 | 4_4:-61038103 | Msa0692490:CDS |
| TCCGAAAGCAGAAGGCGAAG+AGG | 0.616552 | 4_4:-61036903 | Msa0692490:CDS |
| GTCGACGCCGCCGAACCCAT+CGG | 0.618932 | 4_4:-61039659 | Msa0692490:CDS |
| TAGAGTAAGGAACAAGGCAA+GGG | 0.630572 | 4_4:-61039739 | None:intergenic |
| ATGGTTTGGCATCGGATTTG+GGG | 0.630819 | 4_4:+61039632 | None:intergenic |
| GGATTCTGCCTATTCATGAA+AGG | 0.631082 | 4_4:-61039520 | Msa0692490:CDS |
| AAAGGAGCAACCAGCTCCGG+AGG | 0.631961 | 4_4:-61038214 | Msa0692490:CDS |
| TTCTGCCTATTCATGAAAGG+AGG | 0.642527 | 4_4:-61039517 | Msa0692490:CDS |
| TTATGAACCCATTCTTAGGG+CGG | 0.646080 | 4_4:-61039362 | Msa0692490:CDS |
| CATTTGATTAGAATGAGAAG+GGG | 0.654205 | 4_4:+61037951 | None:intergenic |
| CTTCTGATTAGAATGAGAAG+GGG | 0.655387 | 4_4:+61036601 | None:intergenic |
| CAATGTGCTTCTCAGCCATG+AGG | 0.656491 | 4_4:+61036693 | None:intergenic |
| TTCTGCGTGTTCATGAAAGG+AGG | 0.661603 | 4_4:-61036860 | Msa0692490:CDS |
| GAAGGCCGAAAACAAAGAGG+AGG | 0.662357 | 4_4:-61038187 | Msa0692490:CDS |
| TACGAAGGCCGAAAACAAAG+AGG | 0.665700 | 4_4:-61038190 | Msa0692490:CDS |
| AACTTTGTATGAGAGAAAGA+GGG | 0.668098 | 4_4:-61036448 | Msa0692490:three_prime_UTR |
| GGATCATGTATGCTATAACA+AGG | 0.669208 | 4_4:+61036516 | None:intergenic |
| TTACCGTTGACTCCAACTCA+CGG | 0.671368 | 4_4:+61038262 | None:intergenic |
| GCAGTTCTCCCAATCGACGA+AGG | 0.672031 | 4_4:+61036823 | None:intergenic |
| TTGCCTTAGACTCCAACTCA+CGG | 0.673830 | 4_4:+61037011 | None:intergenic |
| GGATTCTTGTTGATTCTCGG+CGG | 0.677920 | 4_4:+61039267 | None:intergenic |
| TGAGGCAGAGAAGAACAAAG+AGG | 0.681593 | 4_4:-61036795 | Msa0692490:CDS |
| CATACACTGCAACAAACGAG+TGG | 0.693657 | 4_4:+61038035 | None:intergenic |
| ACAATTCTCCCATTCAACCA+AGG | 0.704048 | 4_4:+61038113 | None:intergenic |
| TCTTGTTGAAAAGTGCGCTG+AGG | 0.705355 | 4_4:-61039428 | Msa0692490:CDS |
| CCTCGCTGAAAAGTGCTCTG+GGG | 0.729378 | 4_4:-61038061 | Msa0692490:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTTTTTTAATTTTTGATA+TGG | - | chr4_4:61037150-61037169 | Msa0692490:intron | 10.0% |
| !!! | ATTTTTTTTTTTTTTTTTGG+TGG | + | chr4_4:61037664-61037683 | None:intergenic | 10.0% |
| !!! | GCTATTTTTTTTTTTTTTTT+TGG | + | chr4_4:61037667-61037686 | None:intergenic | 10.0% |
| !! | ATATAAAATAAAAATAGGAA+TGG | + | chr4_4:61038257-61038276 | None:intergenic | 10.0% |
| !!! | TTTTTTTTAAACTTAATTGT+TGG | - | chr4_4:61039125-61039144 | Msa0692490:intron | 10.0% |
| !!! | ATCTATTTAATTTGTTGATT+TGG | - | chr4_4:61037397-61037416 | Msa0692490:intron | 15.0% |
| !!! | TCTATTTAATTTGTTGATTT+GGG | - | chr4_4:61037398-61037417 | Msa0692490:intron | 15.0% |
| !!! | TTGTTTTTAATTTTTTGACA+TGG | - | chr4_4:61038468-61038487 | Msa0692490:intron | 15.0% |
| !!! | AAAATCACTTTTGATTAGAA+GGG | + | chr4_4:61036927-61036946 | None:intergenic | 20.0% |
| !!! | AAAAATCACTTTTGATTAGA+AGG | + | chr4_4:61036928-61036947 | None:intergenic | 20.0% |
| !! | TGTTATCAATTGAAATATGT+GGG | + | chr4_4:61037027-61037046 | None:intergenic | 20.0% |
| !! | TAAGTGGAATTATTATTGAT+TGG | - | chr4_4:61037100-61037119 | Msa0692490:intron | 20.0% |
| !!! | TTTTTTTTTTTTTTTGGTGG+TGG | + | chr4_4:61037661-61037680 | None:intergenic | 20.0% |
| !! | TAATAAGTGGAATTACAAAT+AGG | - | chr4_4:61038418-61038437 | Msa0692490:intron | 20.0% |
| !! | AATTAGAAAAAAAAGAAGCA+TGG | + | chr4_4:61039606-61039625 | None:intergenic | 20.0% |
| !!! | TTTAAATAGGTGTTATGAAT+TGG | + | chr4_4:61039686-61039705 | None:intergenic | 20.0% |
| !!! | GTCAGTAACAAATTTTAAAT+AGG | + | chr4_4:61039699-61039718 | None:intergenic | 20.0% |
| ! | ATTATTATGAACCCATTCTT+AGG | - | chr4_4:61036803-61036822 | Msa0692490:CDS | 25.0% |
| ! | TTATTATGAACCCATTCTTA+GGG | - | chr4_4:61036804-61036823 | Msa0692490:CDS | 25.0% |
| !!! | AAATCACTTTTGATTAGAAG+GGG | + | chr4_4:61036926-61036945 | None:intergenic | 25.0% |
| ! | CTGTTATCAATTGAAATATG+TGG | + | chr4_4:61037028-61037047 | None:intergenic | 25.0% |
| !! | TCAATTTTTGTGACAATAAG+TGG | - | chr4_4:61037084-61037103 | Msa0692490:intron | 25.0% |
| ! | TTGATATGGTTATCTATAAG+TGG | - | chr4_4:61037164-61037183 | Msa0692490:intron | 25.0% |
| ! | TTTGAGAATCGTTAATAATG+AGG | - | chr4_4:61037316-61037335 | Msa0692490:intron | 25.0% |
| !! | ATAGATATGTGAATCTCTTT+TGG | - | chr4_4:61037342-61037361 | Msa0692490:intron | 25.0% |
| !! | TAGATATGTGAATCTCTTTT+GGG | - | chr4_4:61037343-61037362 | Msa0692490:intron | 25.0% |
| !!! | TGGTAATTGTATTTTGATTG+AGG | - | chr4_4:61037481-61037500 | Msa0692490:intron | 25.0% |
| !!! | GGTAATTGTATTTTGATTGA+GGG | - | chr4_4:61037482-61037501 | Msa0692490:intron | 25.0% |
| ! | AGAGTAGAGATTCTAATTAA+TGG | - | chr4_4:61037522-61037541 | Msa0692490:intron | 25.0% |
| ! | CAATGCATAATATATATGCA+AGG | - | chr4_4:61037616-61037635 | Msa0692490:intron | 25.0% |
| ! | ACATTTGATTAGAATGAGAA+GGG | + | chr4_4:61038222-61038241 | None:intergenic | 25.0% |
| ! | TGATATTTGAGAATCTCTAA+TGG | - | chr4_4:61038608-61038627 | Msa0692490:intron | 25.0% |
| ! | GATATTTGAGAATCTCTAAT+GGG | - | chr4_4:61038609-61038628 | Msa0692490:intron | 25.0% |
| ! | ATATTTGAGAATCTCTAATG+GGG | - | chr4_4:61038610-61038629 | Msa0692490:intron | 25.0% |
| ! | TCACTAATTACTGAATTAGT+TGG | + | chr4_4:61038780-61038799 | None:intergenic | 25.0% |
| ! | TTCAGTAATTAGTGATTCAA+TGG | - | chr4_4:61038785-61038804 | Msa0692490:intron | 25.0% |
| ! | AGACTAGAGATTCTAATTAA+TGG | - | chr4_4:61038867-61038886 | Msa0692490:intron | 25.0% |
| ! | AACTAAATAGCTATAGGTTT+AGG | + | chr4_4:61039001-61039020 | None:intergenic | 25.0% |
| ! | CTTTTCTTTCTCCAATTCAA+TGG | + | chr4_4:61036857-61036876 | None:intergenic | 30.0% |
| ATTCTTACACAACAGCAAAT+AGG | + | chr4_4:61037234-61037253 | None:intergenic | 30.0% | |
| ATCATCCTTTACAATGCATA+TGG | - | chr4_4:61037252-61037271 | Msa0692490:intron | 30.0% | |
| TCAAAAGTCAACAAACTAAG+TGG | + | chr4_4:61037301-61037320 | None:intergenic | 30.0% | |
| GGTTGAAGTATGTGATTAAA+TGG | - | chr4_4:61037364-61037383 | Msa0692490:intron | 30.0% | |
| TTCAGTAATTAGTGATTCAG+TGG | - | chr4_4:61037461-61037480 | Msa0692490:intron | 30.0% | |
| AGTAGCGATATTTAGTTAGT+GGG | + | chr4_4:61037564-61037583 | None:intergenic | 30.0% | |
| AAGTAGCGATATTTAGTTAG+TGG | + | chr4_4:61037565-61037584 | None:intergenic | 30.0% | |
| CATAATATATATGCAAGGTC+CGG | - | chr4_4:61037621-61037640 | Msa0692490:intron | 30.0% | |
| ATAATATATATGCAAGGTCC+GGG | - | chr4_4:61037622-61037641 | Msa0692490:intron | 30.0% | |
| ACTTCTGGTATAGAATGAAA+AGG | + | chr4_4:61037711-61037730 | None:intergenic | 30.0% | |
| TATTCAGTTACTCATAGTGA+TGG | - | chr4_4:61037806-61037825 | Msa0692490:intron | 30.0% | |
| CATTTGATTAGAATGAGAAG+GGG | + | chr4_4:61038221-61038240 | None:intergenic | 30.0% | |
| CACATTTGATTAGAATGAGA+AGG | + | chr4_4:61038223-61038242 | None:intergenic | 30.0% | |
| ! | GTGTTGTCATTTGAAATAAG+TGG | + | chr4_4:61038326-61038345 | None:intergenic | 30.0% |
| !! | CTTTTTCTGGTCATAATAAG+TGG | - | chr4_4:61038405-61038424 | Msa0692490:intron | 30.0% |
| ! | TGAGATATGTGAATCTCTTT+TGG | - | chr4_4:61038636-61038655 | Msa0692490:intron | 30.0% |
| !! | ATGTGTGTTTGACTTCATTT+TGG | - | chr4_4:61038693-61038712 | Msa0692490:intron | 30.0% |
| TCTAGTCTCTTACTACTAAA+TGG | + | chr4_4:61038855-61038874 | None:intergenic | 30.0% | |
| AGTTGTAGAGTTAAGCTATT+TGG | + | chr4_4:61038917-61038936 | None:intergenic | 30.0% | |
| !! | ACCTATAGCTATTTAGTTTG+AGG | - | chr4_4:61039003-61039022 | Msa0692490:intron | 30.0% |
| CATACACTGTTTCAAAAGAT+CGG | + | chr4_4:61039427-61039446 | None:intergenic | 30.0% | |
| AGTAACCAGTAACAAATAAC+AGG | - | chr4_4:61039542-61039561 | Msa0692490:CDS | 30.0% | |
| ACTTCTGATTAGAATGAGAA+GGG | + | chr4_4:61039572-61039591 | None:intergenic | 30.0% | |
| ! | TAGGTGTTATGAATTGGAAT+AGG | + | chr4_4:61039680-61039699 | None:intergenic | 30.0% |
| TAACTTTGTATGAGAGAAAG+AGG | - | chr4_4:61039720-61039739 | Msa0692490:five_prime_UTR | 30.0% | |
| AACTTTGTATGAGAGAAAGA+GGG | - | chr4_4:61039721-61039740 | Msa0692490:five_prime_UTR | 30.0% | |
| TGCAAAATTGAAGCAGTGTA+TGG | - | chr4_4:61036768-61036787 | Msa0692490:CDS | 35.0% | |
| TGAATTGGAGAAAGAAAAGC+AGG | - | chr4_4:61036858-61036877 | Msa0692490:CDS | 35.0% | |
| AGGTACCATATGCATTGTAA+AGG | + | chr4_4:61037260-61037279 | None:intergenic | 35.0% | |
| TAATATATATGCAAGGTCCG+GGG | - | chr4_4:61037623-61037642 | Msa0692490:intron | 35.0% | |
| !!! | TTTTTTTTTTTGGTGGTGGC+CGG | + | chr4_4:61037657-61037676 | None:intergenic | 35.0% |
| CTAATGATTCGCTTGCTTAT+TGG | + | chr4_4:61037734-61037753 | None:intergenic | 35.0% | |
| !! | GCCTAGCTATTTAGTTTGAT+CGG | - | chr4_4:61037767-61037786 | Msa0692490:intron | 35.0% |
| !! | AGTTACTCATAGTGATGGAT+TGG | - | chr4_4:61037811-61037830 | Msa0692490:intron | 35.0% |
| !! | GTTACTCATAGTGATGGATT+GGG | - | chr4_4:61037812-61037831 | Msa0692490:intron | 35.0% |
| !! | GATGATGGGTTTGTAGTAAT+CGG | + | chr4_4:61038170-61038189 | None:intergenic | 35.0% |
| ACATGGTTGTTATGTATCAG+TGG | - | chr4_4:61038485-61038504 | Msa0692490:intron | 35.0% | |
| !! | TTGTTGATGATTTATGCCCT+AGG | - | chr4_4:61038521-61038540 | Msa0692490:intron | 35.0% |
| !!! | CTGCATTTTGATTGTTCTCT+TGG | - | chr4_4:61038811-61038830 | Msa0692490:intron | 35.0% |
| AGTTAAGCTATTTGGTTGGT+GGG | + | chr4_4:61038909-61038928 | None:intergenic | 35.0% | |
| GTAGAGTTAAGCTATTTGGT+TGG | + | chr4_4:61038913-61038932 | None:intergenic | 35.0% | |
| GCCTCAAACTAAATAGCTAT+AGG | + | chr4_4:61039007-61039026 | None:intergenic | 35.0% | |
| TTAAGTGAGATGAAACACAC+TGG | - | chr4_4:61039072-61039091 | Msa0692490:intron | 35.0% | |
| TAAGTGAGATGAAACACACT+GGG | - | chr4_4:61039073-61039092 | Msa0692490:intron | 35.0% | |
| ! | AGGAGAAACATTTTCTGTCT+TGG | + | chr4_4:61039226-61039245 | None:intergenic | 35.0% |
| !!! | CGATCTTTTGAAACAGTGTA+TGG | - | chr4_4:61039425-61039444 | Msa0692490:CDS | 35.0% |
| GATTCTCATTCCGATTACTA+TGG | - | chr4_4:61039447-61039466 | Msa0692490:CDS | 35.0% | |
| CTTCTGATTAGAATGAGAAG+GGG | + | chr4_4:61039571-61039590 | None:intergenic | 35.0% | |
| CACTTCTGATTAGAATGAGA+AGG | + | chr4_4:61039573-61039592 | None:intergenic | 35.0% | |
| GGATCATGTATGCTATAACA+AGG | + | chr4_4:61039656-61039675 | None:intergenic | 35.0% | |
| GTGTTATGAATTGGAATAGG+TGG | + | chr4_4:61039677-61039696 | None:intergenic | 35.0% | |
| GATGAAGAAGAAGGAGAATG+CGG | - | chr4_4:61036628-61036647 | Msa0692490:exon | 40.0% | |
| GGATTCTGCCTATTCATGAA+AGG | - | chr4_4:61036649-61036668 | Msa0692490:CDS | 40.0% | |
| TTCTGCCTATTCATGAAAGG+AGG | - | chr4_4:61036652-61036671 | Msa0692490:CDS | 40.0% | |
| GCAGTGTATGGATGAACATT+CGG | - | chr4_4:61036780-61036799 | Msa0692490:CDS | 40.0% | |
| TTATGAACCCATTCTTAGGG+CGG | - | chr4_4:61036807-61036826 | Msa0692490:CDS | 40.0% | |
| AGAGCAGGTTACCATTGAAT+TGG | - | chr4_4:61036843-61036862 | Msa0692490:CDS | 40.0% | |
| GGAGAAAGAAAAGCAGGATT+TGG | - | chr4_4:61036864-61036883 | Msa0692490:CDS | 40.0% | |
| !! | AGGGGATTCTTGTTGATTCT+CGG | + | chr4_4:61036908-61036927 | None:intergenic | 40.0% |
| ACTGTGTATCAGTGTATGAG+AGG | - | chr4_4:61037051-61037070 | Msa0692490:intron | 40.0% | |
| TATCAGTGTATGAGAGGTTG+AGG | - | chr4_4:61037057-61037076 | Msa0692490:intron | 40.0% | |
| ATCAGTGTATGAGAGGTTGA+GGG | - | chr4_4:61037058-61037077 | Msa0692490:intron | 40.0% | |
| CAAATAGGCTTAGCTAGCTA+AGG | + | chr4_4:61037219-61037238 | None:intergenic | 40.0% | |
| TATGGTACCTAGTGCTTGTT+TGG | - | chr4_4:61037270-61037289 | Msa0692490:intron | 40.0% | |
| TACCTAGTGCTTGTTTGGTT+TGG | - | chr4_4:61037275-61037294 | Msa0692490:intron | 40.0% | |
| GAACTAGTTAGCACAGACAA+AGG | + | chr4_4:61037444-61037463 | None:intergenic | 40.0% | |
| ! | TGAGCTTAACTCAGTTGGTA+TGG | - | chr4_4:61037592-61037611 | Msa0692490:intron | 40.0% |
| !!! | TTTTTTTTTTGGTGGTGGCC+GGG | + | chr4_4:61037656-61037675 | None:intergenic | 40.0% |
| GCCGATCAAACTAAATAGCT+AGG | + | chr4_4:61037771-61037790 | None:intergenic | 40.0% | |
| !! | TTTAGTTTGATCGGCTCACT+TGG | - | chr4_4:61037776-61037795 | Msa0692490:intron | 40.0% |
| TGCCTGTTCATTAAAGGAGA+CGG | - | chr4_4:61038022-61038041 | Msa0692490:CDS | 40.0% | |
| AACCGTCTCCTTTAATGAAC+AGG | + | chr4_4:61038027-61038046 | None:intergenic | 40.0% | |
| ACAATTCTCCCATTCAACCA+AGG | + | chr4_4:61038059-61038078 | None:intergenic | 40.0% | |
| ATGGGAGAATTGTGTGAAAG+AGG | - | chr4_4:61038066-61038085 | Msa0692490:CDS | 40.0% | |
| ! | ACTCGTTTGTTGCAGTGTAT+GGG | - | chr4_4:61038136-61038155 | Msa0692490:CDS | 40.0% |
| ! | AGAGAGTGGTTCTCTTTTTC+TGG | - | chr4_4:61038392-61038411 | Msa0692490:intron | 40.0% |
| CAAATAGGCTTAGCTACCTA+GGG | + | chr4_4:61038540-61038559 | None:intergenic | 40.0% | |
| ATTCTCGTGCAATCGCAAAT+AGG | + | chr4_4:61038555-61038574 | None:intergenic | 40.0% | |
| ACGAGAATGATGCTTCATCA+TGG | - | chr4_4:61038567-61038586 | Msa0692490:intron | 40.0% | |
| CGAGAATGATGCTTCATCAT+GGG | - | chr4_4:61038568-61038587 | Msa0692490:intron | 40.0% | |
| GAGTTAAGCTATTTGGTTGG+TGG | + | chr4_4:61038910-61038929 | None:intergenic | 40.0% | |
| CTAATGAATTGCTTGCGTAC+TGG | + | chr4_4:61038970-61038989 | None:intergenic | 40.0% | |
| !! | CATATTTGCTATCACGTGAG+AGG | + | chr4_4:61039032-61039051 | None:intergenic | 40.0% |
| ATGCAGTCACTCAAAGTTAG+TGG | - | chr4_4:61039049-61039068 | Msa0692490:intron | 40.0% | |
| ! | CTTTTCTTTCTCCAAGTCGA+TGG | + | chr4_4:61039514-61039533 | None:intergenic | 40.0% |
| ! | GGCTTCCTGTTATTTGTTAC+TGG | + | chr4_4:61039550-61039569 | None:intergenic | 40.0% |
| ! | ATGGTTTGGCATCGGATTTG+GGG | + | chr4_4:61036540-61036559 | None:intergenic | 45.0% |
| ! | GATGGTTTGGCATCGGATTT+GGG | + | chr4_4:61036541-61036560 | None:intergenic | 45.0% |
| ! | TGATGGTTTGGCATCGGATT+TGG | + | chr4_4:61036542-61036561 | None:intergenic | 45.0% |
| ! | AGGATCTGATGGTTTGGCAT+CGG | + | chr4_4:61036548-61036567 | None:intergenic | 45.0% |
| TGATTGGGAAGAGGATCTGA+TGG | + | chr4_4:61036559-61036578 | None:intergenic | 45.0% | |
| TTCTTCATCTTCCTCGCCTT+CGG | + | chr4_4:61036617-61036636 | None:intergenic | 45.0% | |
| TGCCTATTCATGAAAGGAGG+CGG | - | chr4_4:61036655-61036674 | Msa0692490:CDS | 45.0% | |
| AACCGCCTCCTTTCATGAAT+AGG | + | chr4_4:61036660-61036679 | None:intergenic | 45.0% | |
| CAAAGACACGTTCATCGCTT+GGG | - | chr4_4:61036681-61036700 | Msa0692490:CDS | 45.0% | |
| ! | TCTTGTTGAAAAGTGCGCTG+AGG | - | chr4_4:61036741-61036760 | Msa0692490:CDS | 45.0% |
| !! | GGATTCTTGTTGATTCTCGG+CGG | + | chr4_4:61036905-61036924 | None:intergenic | 45.0% |
| TCGCTTGCTTATTGGACTTC+TGG | + | chr4_4:61037726-61037745 | None:intergenic | 45.0% | |
| !! | TTACCGTTGACTCCAACTCA+CGG | + | chr4_4:61037910-61037929 | None:intergenic | 45.0% |
| !! | TCCTTTTCGGCTTGCTTTGA+GGG | + | chr4_4:61037941-61037960 | None:intergenic | 45.0% |
| TACGAAGGCCGAAAACAAAG+AGG | - | chr4_4:61037979-61037998 | Msa0692490:CDS | 45.0% | |
| GGGTTCTGCCTGTTCATTAA+AGG | - | chr4_4:61038016-61038035 | Msa0692490:CDS | 45.0% | |
| CAGAGACACCTTGGTTGAAT+GGG | - | chr4_4:61038048-61038067 | Msa0692490:CDS | 45.0% | |
| GAATTGTGTGAAAGAGGCGA+AGG | - | chr4_4:61038072-61038091 | Msa0692490:CDS | 45.0% | |
| CATACACTGCAACAAACGAG+TGG | + | chr4_4:61038137-61038156 | None:intergenic | 45.0% | |
| ! | CACTCGTTTGTTGCAGTGTA+TGG | - | chr4_4:61038135-61038154 | Msa0692490:CDS | 45.0% |
| GGGTTTGTAGTAATCGGAAC+TGG | + | chr4_4:61038164-61038183 | None:intergenic | 45.0% | |
| TGATTAGAATGAGAAGGGGC+TGG | + | chr4_4:61038217-61038236 | None:intergenic | 45.0% | |
| TGTGTGCAAGAGAAAGAGAG+TGG | - | chr4_4:61038378-61038397 | Msa0692490:intron | 45.0% | |
| GCAAATAGGCTTAGCTACCT+AGG | + | chr4_4:61038541-61038560 | None:intergenic | 45.0% | |
| TTGCCTTAGACTCCAACTCA+CGG | + | chr4_4:61039161-61039180 | None:intergenic | 45.0% | |
| ! | TCGTTTTCGTCATGCTTCAG+GGG | + | chr4_4:61039192-61039211 | None:intergenic | 45.0% |
| ! | CTCGTTTTCGTCATGCTTCA+GGG | + | chr4_4:61039193-61039212 | None:intergenic | 45.0% |
| TTCTGCGTGTTCATGAAAGG+AGG | - | chr4_4:61039309-61039328 | Msa0692490:CDS | 45.0% | |
| TGAGGCAGAGAAGAACAAAG+AGG | - | chr4_4:61039374-61039393 | Msa0692490:CDS | 45.0% | |
| GAGGATGGGTCCATAGTAAT+CGG | + | chr4_4:61039460-61039479 | None:intergenic | 45.0% | |
| TTACTATGGACCCATCCTCA+TGG | - | chr4_4:61039461-61039480 | Msa0692490:CDS | 45.0% | |
| TTCTTTCTCCAAGTCGATGG+CGG | + | chr4_4:61039511-61039530 | None:intergenic | 45.0% | |
| TGTATGAGAGAAAGAGGGTC+TGG | - | chr4_4:61039726-61039745 | Msa0692490:five_prime_UTR | 45.0% | |
| !! | TAAAAACAATAATTTAAAAA+GGG | + | chr4_4:61036962-61036981 | None:intergenic | 5.0% |
| !! | ATAAAAACAATAATTTAAAA+AGG | + | chr4_4:61036963-61036982 | None:intergenic | 5.0% |
| !! | ATGAAATATAAAATAAAAAT+AGG | + | chr4_4:61038262-61038281 | None:intergenic | 5.0% |
| !! | TTGGGGTTTTCCGATGGGTT+CGG | + | chr4_4:61036523-61036542 | None:intergenic | 50.0% |
| !! | CGGATTTGGGGTTTTCCGAT+GGG | + | chr4_4:61036528-61036547 | None:intergenic | 50.0% |
| !! | TCGGATTTGGGGTTTTCCGA+TGG | + | chr4_4:61036529-61036548 | None:intergenic | 50.0% |
| GGGAAGAGGATCTGATGGTT+TGG | + | chr4_4:61036554-61036573 | None:intergenic | 50.0% | |
| GGCGAGGAAGATGAAGAAGA+AGG | - | chr4_4:61036619-61036638 | Msa0692490:exon | 50.0% | |
| GCAAAGACACGTTCATCGCT+TGG | - | chr4_4:61036680-61036699 | Msa0692490:CDS | 50.0% | |
| TGCTTCTCCGCCCTAAGAAT+GGG | + | chr4_4:61036817-61036836 | None:intergenic | 50.0% | |
| ATGCTTCTCCGCCCTAAGAA+TGG | + | chr4_4:61036818-61036837 | None:intergenic | 50.0% | |
| !! | TTCTTGTTGATTCTCGGCGG+TGG | + | chr4_4:61036902-61036921 | None:intergenic | 50.0% |
| GGCCAAACCAAACAAGCACT+AGG | + | chr4_4:61037280-61037299 | None:intergenic | 50.0% | |
| CCAACTGAGTTAAGCTCACG+AGG | + | chr4_4:61037590-61037609 | None:intergenic | 50.0% | |
| CCTCGTGAGCTTAACTCAGT+TGG | - | chr4_4:61037587-61037606 | Msa0692490:intron | 50.0% | |
| !! | ATGGATTGGGACGAGACACT+GGG | - | chr4_4:61037825-61037844 | Msa0692490:intron | 50.0% |
| ! | TGACCGTGAGTTGGAGTCAA+CGG | - | chr4_4:61037904-61037923 | Msa0692490:intron | 50.0% |
| !! | CTCCTTTTCGGCTTGCTTTG+AGG | + | chr4_4:61037942-61037961 | None:intergenic | 50.0% |
| GAAGGCCGAAAACAAAGAGG+AGG | - | chr4_4:61037982-61038001 | Msa0692490:CDS | 50.0% | |
| GCCGAAAACAAAGAGGAGGA+GGG | - | chr4_4:61037986-61038005 | Msa0692490:CDS | 50.0% | |
| !!! | CCCCTCCTCCTCTTTGTTTT+CGG | + | chr4_4:61037990-61038009 | None:intergenic | 50.0% |
| CCGAAAACAAAGAGGAGGAG+GGG | - | chr4_4:61037987-61038006 | Msa0692490:CDS | 50.0% | |
| CGAAAACAAAGAGGAGGAGG+GGG | - | chr4_4:61037988-61038007 | Msa0692490:CDS | 50.0% | |
| GCAGAGACACCTTGGTTGAA+TGG | - | chr4_4:61038047-61038066 | Msa0692490:CDS | 50.0% | |
| AGAGGCGAAGGAGAAGAAAG+AGG | - | chr4_4:61038084-61038103 | Msa0692490:CDS | 50.0% | |
| !! | ACCTCGCTGAAAAGTGCTCT+GGG | - | chr4_4:61038107-61038126 | Msa0692490:CDS | 50.0% |
| ! | CGCTTCTCGGTCTTGATGAT+GGG | + | chr4_4:61038184-61038203 | None:intergenic | 50.0% |
| GCGTACTGGACTTCTGGTAT+AGG | + | chr4_4:61038956-61038975 | None:intergenic | 50.0% | |
| TTGCTTGCGTACTGGACTTC+TGG | + | chr4_4:61038962-61038981 | None:intergenic | 50.0% | |
| ! | GCTCGTTTTCGTCATGCTTC+AGG | + | chr4_4:61039194-61039213 | None:intergenic | 50.0% |
| TTCTCCTGATCAAGCAGCTG+TGG | - | chr4_4:61039239-61039258 | Msa0692490:intron | 50.0% | |
| TCCTCTTCGCCTTCTGCTTT+CGG | + | chr4_4:61039270-61039289 | None:intergenic | 50.0% | |
| GGGTTCTGCGTGTTCATGAA+AGG | - | chr4_4:61039306-61039325 | Msa0692490:CDS | 50.0% | |
| TGCGTGTTCATGAAAGGAGG+TGG | - | chr4_4:61039312-61039331 | Msa0692490:CDS | 50.0% | |
| ! | CAGAGACACCTTCGTCGATT+GGG | - | chr4_4:61039338-61039357 | Msa0692490:CDS | 50.0% |
| TTGGGAGAACTGCATGGATG+AGG | - | chr4_4:61039356-61039375 | Msa0692490:CDS | 50.0% | |
| !! | CGTCGTTCAAAAGTGCTCTC+AGG | - | chr4_4:61039398-61039417 | Msa0692490:CDS | 50.0% |
| TGCTTCTCAGCCATGAGGAT+GGG | + | chr4_4:61039474-61039493 | None:intergenic | 50.0% | |
| CAATGTGCTTCTCAGCCATG+AGG | + | chr4_4:61039479-61039498 | None:intergenic | 50.0% | |
| TCTTCCCAATCAACCACCGC+CGG | - | chr4_4:61036567-61036586 | Msa0692490:three_prime_UTR | 55.0% | |
| !! | GTTTCTGGTTCGGGAGACTC+CGG | + | chr4_4:61036589-61036608 | None:intergenic | 55.0% |
| TTCATCTTCCTCGCCTTCGG+CGG | + | chr4_4:61036614-61036633 | None:intergenic | 55.0% | |
| ! | GGAGAAGCATGCTGAAGAGC+AGG | - | chr4_4:61036828-61036847 | Msa0692490:CDS | 55.0% |
| !! | TTGTTGATTCTCGGCGGTGG+CGG | + | chr4_4:61036899-61036918 | None:intergenic | 55.0% |
| AAGGTCCGGGGTTCAAATCC+CGG | - | chr4_4:61037635-61037654 | Msa0692490:intron | 55.0% | |
| !! | GATGGATTGGGACGAGACAC+TGG | - | chr4_4:61037824-61037843 | Msa0692490:intron | 55.0% |
| ACTCCAACTCACGGTCACTG+CGG | + | chr4_4:61037901-61037920 | None:intergenic | 55.0% | |
| GCCCTCAAAGCAAGCCGAAA+AGG | - | chr4_4:61037937-61037956 | Msa0692490:intron | 55.0% | |
| ! | CGGAGCTGGTTGCTCCTTTT+CGG | + | chr4_4:61037954-61037973 | None:intergenic | 55.0% |
| CGAAAAGGAGCAACCAGCTC+CGG | - | chr4_4:61037952-61037971 | Msa0692490:CDS | 55.0% | |
| ! | TTTTCGGCCTTCGTAGCCTC+CGG | + | chr4_4:61037974-61037993 | None:intergenic | 55.0% |
| GGCCGAAAACAAAGAGGAGG+AGG | - | chr4_4:61037985-61038004 | Msa0692490:CDS | 55.0% | |
| AAAGAGGAGGAGGGGGATTG+CGG | - | chr4_4:61037995-61038014 | Msa0692490:CDS | 55.0% | |
| AGACGGTTGCAGAGACACCT+TGG | - | chr4_4:61038039-61038058 | Msa0692490:CDS | 55.0% | |
| !! | GACCTCGCTGAAAAGTGCTC+TGG | - | chr4_4:61038106-61038125 | Msa0692490:CDS | 55.0% |
| !! | CCTCGCTGAAAAGTGCTCTG+GGG | - | chr4_4:61038108-61038127 | Msa0692490:CDS | 55.0% |
| GCGCTTCTCGGTCTTGATGA+TGG | + | chr4_4:61038185-61038204 | None:intergenic | 55.0% | |
| !! | TCTCTTGGTAACGAGCAGCG+AGG | - | chr4_4:61038826-61038845 | Msa0692490:intron | 55.0% |
| ! | CGACCGTGAGTTGGAGTCTA+AGG | - | chr4_4:61039155-61039174 | Msa0692490:intron | 55.0% |
| TCCTGATCAAGCAGCTGTGG+AGG | - | chr4_4:61039242-61039261 | Msa0692490:intron | 55.0% | |
| TCCGAAAGCAGAAGGCGAAG+AGG | - | chr4_4:61039266-61039285 | Msa0692490:CDS | 55.0% | |
| GAAAGCAGAAGGCGAAGAGG+AGG | - | chr4_4:61039269-61039288 | Msa0692490:CDS | 55.0% | |
| GAAGGCGAAGAGGAGGAAGA+AGG | - | chr4_4:61039276-61039295 | Msa0692490:CDS | 55.0% | |
| GAGGAGGAAGAAGGTGAGTG+CGG | - | chr4_4:61039285-61039304 | Msa0692490:CDS | 55.0% | |
| AGGAGGAAGAAGGTGAGTGC+GGG | - | chr4_4:61039286-61039305 | Msa0692490:CDS | 55.0% | |
| GCAGAGACACCTTCGTCGAT+TGG | - | chr4_4:61039337-61039356 | Msa0692490:CDS | 55.0% | |
| GCAGTTCTCCCAATCGACGA+AGG | + | chr4_4:61039349-61039368 | None:intergenic | 55.0% | |
| ! | CGTCGATTGGGAGAACTGCA+TGG | - | chr4_4:61039350-61039369 | Msa0692490:CDS | 55.0% |
| GTGCTTCTCAGCCATGAGGA+TGG | + | chr4_4:61039475-61039494 | None:intergenic | 55.0% | |
| ! | AGAACAAGCCGCCATCGACT+TGG | - | chr4_4:61039500-61039519 | Msa0692490:CDS | 55.0% |
| !! | GGGTTTTCCGATGGGTTCGG+CGG | + | chr4_4:61036520-61036539 | None:intergenic | 60.0% |
| GGCGGTGGTTGATTGGGAAG+AGG | + | chr4_4:61036568-61036587 | None:intergenic | 60.0% | |
| GACTCCGGCGGTGGTTGATT+GGG | + | chr4_4:61036574-61036593 | None:intergenic | 60.0% | |
| AGACTCCGGCGGTGGTTGAT+TGG | + | chr4_4:61036575-61036594 | None:intergenic | 60.0% | |
| !! | TTCGGCGGCGGTTTCTGGTT+CGG | + | chr4_4:61036599-61036618 | None:intergenic | 60.0% |
| GAACCGCAGTGACCGTGAGT+TGG | - | chr4_4:61037895-61037914 | Msa0692490:intron | 60.0% | |
| AAAGGAGCAACCAGCTCCGG+AGG | - | chr4_4:61037955-61037974 | Msa0692490:CDS | 60.0% | |
| AAGAGGAGGAGGGGGATTGC+GGG | - | chr4_4:61037996-61038015 | Msa0692490:CDS | 60.0% | |
| !! | CCCCAGAGCACTTTTCAGCG+AGG | + | chr4_4:61038111-61038130 | None:intergenic | 60.0% |
| TGGCTCTTCGACGCGCTTCT+CGG | + | chr4_4:61038197-61038216 | None:intergenic | 60.0% | |
| GCCTCCACAGCTGCTTGATC+AGG | + | chr4_4:61039246-61039265 | None:intergenic | 60.0% | |
| GTGGAGGCTCCGAAAGCAGA+AGG | - | chr4_4:61039258-61039277 | Msa0692490:CDS | 60.0% | |
| !! | TCTGGTTCGGGAGACTCCGG+CGG | + | chr4_4:61036586-61036605 | None:intergenic | 65.0% |
| !! | TCGGCGGCGGTTTCTGGTTC+GGG | + | chr4_4:61036598-61036617 | None:intergenic | 65.0% |
| GAACCAGAAACCGCCGCCGA+AGG | - | chr4_4:61036598-61036617 | Msa0692490:three_prime_UTR | 65.0% | |
| ATCTTCCTCGCCTTCGGCGG+CGG | + | chr4_4:61036611-61036630 | None:intergenic | 65.0% | |
| ! | TTGATTCTCGGCGGTGGCGG+CGG | + | chr4_4:61036896-61036915 | None:intergenic | 65.0% |
| GGTGGCCGGGATTTGAACCC+CGG | + | chr4_4:61037643-61037662 | None:intergenic | 65.0% | |
| ACCAGCTCCGGAGGCTACGA+AGG | - | chr4_4:61037964-61037983 | Msa0692490:CDS | 65.0% | |
| GGACTGCAGCGACCGTGAGT+TGG | - | chr4_4:61039146-61039165 | Msa0692490:intron | 65.0% | |
| GTCGACGCCGCCGAACCCAT+CGG | - | chr4_4:61036510-61036529 | Msa0692490:three_prime_UTR | 70.0% | |
| TCGCCTTCGGCGGCGGTTTC+TGG | + | chr4_4:61036604-61036623 | None:intergenic | 70.0% | |
| AGAAACCGCCGCCGAAGGCG+AGG | - | chr4_4:61036603-61036622 | Msa0692490:three_prime_UTR | 70.0% | |
| GCCTTCGTAGCCTCCGGAGC+TGG | + | chr4_4:61037968-61037987 | None:intergenic | 70.0% | |
| GGTTCGGGAGACTCCGGCGG+TGG | + | chr4_4:61036583-61036602 | None:intergenic | 75.0% | |
| ! | ATTCTCGGCGGTGGCGGCGG+CGG | + | chr4_4:61036893-61036912 | None:intergenic | 75.0% |
| !! | CTCGGCGGTGGCGGCGGCGG+CGG | + | chr4_4:61036890-61036909 | None:intergenic | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 61036442 | 61039749 | 61036442 | ID=Msa0692490;Name=Msa0692490 |
| chr4_4 | mRNA | 61036442 | 61039749 | 61036442 | ID=Msa0692490-mRNA-1;Parent=Msa0692490;Name=Msa0692490-mRNA-1;_AED=0.08;_eAED=0.08;_QI=66|1|1|1|1|1|3|189|390 |
| chr4_4 | exon | 61036442 | 61037036 | 61036442 | ID=Msa0692490-mRNA-1:exon:16811;Parent=Msa0692490-mRNA-1 |
| chr4_4 | exon | 61037952 | 61038287 | 61037952 | ID=Msa0692490-mRNA-1:exon:16810;Parent=Msa0692490-mRNA-1 |
| chr4_4 | exon | 61039253 | 61039749 | 61039253 | ID=Msa0692490-mRNA-1:exon:16809;Parent=Msa0692490-mRNA-1 |
| chr4_4 | five_prime_UTR | 61039684 | 61039749 | 61039684 | ID=Msa0692490-mRNA-1:five_prime_utr;Parent=Msa0692490-mRNA-1 |
| chr4_4 | CDS | 61039253 | 61039683 | 61039253 | ID=Msa0692490-mRNA-1:cds;Parent=Msa0692490-mRNA-1 |
| chr4_4 | CDS | 61037952 | 61038287 | 61037952 | ID=Msa0692490-mRNA-1:cds;Parent=Msa0692490-mRNA-1 |
| chr4_4 | CDS | 61036631 | 61037036 | 61036631 | ID=Msa0692490-mRNA-1:cds;Parent=Msa0692490-mRNA-1 |
| chr4_4 | three_prime_UTR | 61036442 | 61036630 | 61036442 | ID=Msa0692490-mRNA-1:three_prime_utr;Parent=Msa0692490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
