Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0610000 | XP_013456758.1 | 86.701 | 391 | 18 | 2 | 1 | 391 | 1 | 357 | 0.0 | 581 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0610000 | A0A072ULX9 | 86.701 | 391 | 18 | 2 | 1 | 391 | 1 | 357 | 0.0 | 581 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0113920 | Msa0610000 | 0.800324 | 1.520479e-48 | -8.615850e-47 |
| Msa0610000 | Msa0648670 | 0.801831 | 7.477300e-49 | -8.615850e-47 |
| Msa0610000 | Msa0650370 | 0.878840 | 2.027962e-69 | -8.615850e-47 |
| Msa0610000 | Msa0692490 | 0.807177 | 5.740749e-50 | -8.615850e-47 |
| Msa0610000 | Msa0943180 | 0.819798 | 9.609908e-53 | -8.615850e-47 |
| Msa0610000 | Msa1116940 | 0.836332 | 9.958732e-57 | -8.615850e-47 |
| Msa0610000 | Msa1235980 | 0.802995 | 4.305114e-49 | -8.615850e-47 |
| Msa0610000 | Msa1316100 | 0.801068 | 1.072146e-48 | -8.615850e-47 |
| Msa0610000 | Msa1317390 | 0.818411 | 1.987872e-52 | -8.615850e-47 |
| Msa0610000 | Msa1453530 | 0.831583 | 1.537832e-55 | -8.615850e-47 |
| Msa0610000 | Msa1456160 | 0.877889 | 4.374531e-69 | -8.615850e-47 |
| Msa0610000 | Msa1465700 | 0.808109 | 3.640529e-50 | -8.615850e-47 |
| Msa0528750 | Msa0610000 | 0.882240 | 1.229388e-70 | -8.615850e-47 |
| Msa0528820 | Msa0610000 | 0.876353 | 1.493306e-68 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0610000 | MtrunA17_Chr4g0042691 | 86.701 | 391 | 18 | 2 | 1 | 391 | 1 | 357 | 0.0 | 581 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0610000 | AT1G14060.1 | 49.580 | 119 | 39 | 3 | 4 | 105 | 26 | 140 | 2.55e-27 | 107 |
| Msa0610000 | AT1G14060.1 | 69.492 | 59 | 18 | 0 | 307 | 365 | 82 | 140 | 3.75e-26 | 103 |
| Msa0610000 | AT1G14060.1 | 46.667 | 90 | 48 | 0 | 151 | 240 | 51 | 140 | 1.12e-18 | 83.6 |
| Msa0610000 | AT5G02210.1 | 47.191 | 89 | 44 | 1 | 34 | 119 | 65 | 153 | 8.42e-18 | 80.5 |
| Msa0610000 | AT5G02210.1 | 50.000 | 78 | 30 | 4 | 309 | 382 | 80 | 152 | 2.56e-14 | 70.9 |
| Msa0610000 | AT5G02210.1 | 40.000 | 75 | 42 | 1 | 178 | 249 | 74 | 148 | 4.63e-11 | 61.2 |
| Msa0610000 | AT5G57570.1 | 54.545 | 66 | 29 | 1 | 47 | 111 | 53 | 118 | 3.28e-14 | 69.7 |
| Msa0610000 | AT5G57640.1 | 38.129 | 139 | 62 | 5 | 248 | 368 | 13 | 145 | 4.97e-14 | 71.2 |
| Msa0610000 | AT5G57640.1 | 45.333 | 75 | 41 | 0 | 45 | 119 | 82 | 156 | 1.95e-13 | 69.7 |
Find 134 sgRNAs with CRISPR-Local
Find 255 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGCCTTCGGCGGCGGTTTC+TGG | 0.056859 | 4_2:+57590194 | None:intergenic |
| ATTATTATGAACCCATTCTT+AGG | 0.179261 | 4_2:-57589992 | Msa0610000:CDS |
| CACTCGTTTGTTGCAGTGTA+TGG | 0.222714 | 4_2:-57588599 | Msa0610000:CDS |
| GGCTTCCTGTTATTTGTTAC+TGG | 0.225860 | 4_2:+57587189 | None:intergenic |
| TGATGGTTTGGCATCGGATT+TGG | 0.227434 | 4_2:+57590256 | None:intergenic |
| GATGGTTTGGCATCGGATTT+GGG | 0.232683 | 4_2:+57590257 | None:intergenic |
| TCCTCTTCGCCTTCTGCTTT+CGG | 0.242262 | 4_2:+57587469 | None:intergenic |
| GGGTTCTGCCTGTTCATTAA+AGG | 0.259132 | 4_2:-57588718 | Msa0610000:CDS |
| CTCGGCGGTGGCGGCGGCGG+CGG | 0.261567 | 4_2:+57589905 | None:intergenic |
| TCGGCGGCGGTTTCTGGTTC+GGG | 0.299995 | 4_2:+57590200 | None:intergenic |
| GGCGGTGGCGGCGGCGGCGG+CGG | 0.303256 | 4_2:+57589908 | None:intergenic |
| TTCGGCGGCGGTTTCTGGTT+CGG | 0.312231 | 4_2:+57590199 | None:intergenic |
| GATTCTCATTCCGATTACTA+TGG | 0.325236 | 4_2:-57587289 | Msa0610000:CDS |
| CGACCGTGAGTTGGAGTCTA+AGG | 0.345428 | 4_2:-57587581 | Msa0610000:CDS |
| CGCTTCTCGGTCTTGATGAT+GGG | 0.346732 | 4_2:+57588553 | None:intergenic |
| GACTCCGGTGGTGGTTGATT+GGG | 0.354635 | 4_2:+57590224 | None:intergenic |
| GCGCTTCTCGGTCTTGATGA+TGG | 0.357410 | 4_2:+57588552 | None:intergenic |
| TTGCTCTTCGACGCGCTTCT+CGG | 0.361977 | 4_2:+57588540 | None:intergenic |
| GGAGAAAGAAAAGCAGGATT+TGG | 0.362471 | 4_2:-57589931 | Msa0610000:CDS |
| TTCTTCATCTTCCTCGCCTT+CGG | 0.365927 | 4_2:+57590181 | None:intergenic |
| GCCTCCACAGCTGCTTGATC+AGG | 0.377475 | 4_2:+57587493 | None:intergenic |
| GATGATGGGTTTGTAGTAAT+CGG | 0.384814 | 4_2:+57588567 | None:intergenic |
| AGACTCCGGTGGTGGTTGAT+TGG | 0.385111 | 4_2:+57590223 | None:intergenic |
| AGGGGATTCTTGTTGATTCT+CGG | 0.385534 | 4_2:+57589887 | None:intergenic |
| TTTAAATAGGTGTTATGAAT+GGG | 0.387442 | 4_2:+57587053 | None:intergenic |
| AGAGCAGGTTACCATTGAAT+TGG | 0.397436 | 4_2:-57589952 | Msa0610000:CDS |
| ATTCTCGGCGGTGGCGGCGG+CGG | 0.403836 | 4_2:+57589902 | None:intergenic |
| AGTAACCAGTAACAAATAAC+AGG | 0.410673 | 4_2:-57587194 | Msa0610000:exon |
| AACCGCCTCCTTTCATGAAT+AGG | 0.411096 | 4_2:+57590138 | None:intergenic |
| ATGCTTCTCCGCCCTAAGAA+TGG | 0.411420 | 4_2:+57589980 | None:intergenic |
| GCAGAGACACCTTGGTTGAA+TGG | 0.415028 | 4_2:-57588687 | Msa0610000:CDS |
| ATCTTCCTCGCCTTCGGCGG+CGG | 0.416651 | 4_2:+57590187 | None:intergenic |
| AACCGTCTCCTTTAATGAAC+AGG | 0.424322 | 4_2:+57588710 | None:intergenic |
| ACCTCGCTGAAAAGTGCTCT+GGG | 0.429532 | 4_2:-57588627 | Msa0610000:CDS |
| GCAAAGACACGTTCATCGCT+TGG | 0.430395 | 4_2:-57590115 | Msa0610000:CDS |
| GACCTCGCTGAAAAGTGCTC+TGG | 0.431197 | 4_2:-57588628 | Msa0610000:CDS |
| GGGAAGAGGATCTGATGGTT+TGG | 0.434881 | 4_2:+57590244 | None:intergenic |
| GCCTTCGTAGCCTCCGGAGC+TGG | 0.437486 | 4_2:+57588769 | None:intergenic |
| CAGAGACACCTTGGTTGAAT+GGG | 0.446480 | 4_2:-57588686 | Msa0610000:CDS |
| CAGAGACACCTTCGTCGATT+GGG | 0.447393 | 4_2:-57587398 | Msa0610000:CDS |
| TGCTTCTCCGCCCTAAGAAT+GGG | 0.453023 | 4_2:+57589981 | None:intergenic |
| CAAAGACACGTTCATCGCTT+GGG | 0.455392 | 4_2:-57590114 | Msa0610000:CDS |
| TTATTATGAACCCATTCTTA+GGG | 0.456966 | 4_2:-57589991 | Msa0610000:CDS |
| GAGGATGGGTCCATAGTAAT+CGG | 0.458594 | 4_2:+57587279 | None:intergenic |
| TTGATTCTCGGCGGTGGCGG+CGG | 0.458622 | 4_2:+57589899 | None:intergenic |
| GCAGAGACACCTTCGTCGAT+TGG | 0.467963 | 4_2:-57587399 | Msa0610000:CDS |
| GCCCTCAAAGCAAGCTGAAA+AGG | 0.468090 | 4_2:-57588797 | Msa0610000:CDS |
| GGGTTTGTAGTAATCGGAAC+TGG | 0.476444 | 4_2:+57588573 | None:intergenic |
| TGCAAAATTGAAGCAGTGTA+TGG | 0.476710 | 4_2:-57590027 | Msa0610000:CDS |
| ACTCGTTTGTTGCAGTGTAT+GGG | 0.481333 | 4_2:-57588598 | Msa0610000:CDS |
| GGCCGAAAACAAAGAGGAGG+AGG | 0.485890 | 4_2:-57588749 | Msa0610000:CDS |
| TAGGTGTTATGAATGGGAAT+AGG | 0.486375 | 4_2:+57587059 | None:intergenic |
| TGAAAAGGAGCAACCAGCTC+CGG | 0.488322 | 4_2:-57588782 | Msa0610000:CDS |
| GCAGTGTATGGATGAACATT+CGG | 0.489367 | 4_2:-57590015 | Msa0610000:CDS |
| GAAGGCGAAGAGGAGGAAGA+AGG | 0.494264 | 4_2:-57587460 | Msa0610000:CDS |
| GGTTCGGGAGACTCCGGTGG+TGG | 0.501484 | 4_2:+57590215 | None:intergenic |
| AGAACAAGCCGCCATCGACT+TGG | 0.501554 | 4_2:-57587236 | Msa0610000:CDS |
| CACATTTGATTAGAATGAGA+AGG | 0.505801 | 4_2:+57588514 | None:intergenic |
| TCCTGATCAAGCAGCTGTGG+AGG | 0.510427 | 4_2:-57587494 | Msa0610000:CDS |
| TGCTTCTCAGCCATGAGGAT+GGG | 0.510615 | 4_2:+57587265 | None:intergenic |
| TAACTTTGTATGAGAGAAAG+AGG | 0.511684 | 4_2:-57587016 | Msa0610000:three_prime_UTR |
| TGAATTGGAGAAAGAAAAGC+AGG | 0.511809 | 4_2:-57589937 | Msa0610000:CDS |
| GTTTCTGGTTCGGGAGACTC+CGG | 0.516638 | 4_2:+57590209 | None:intergenic |
| ACTTCTGATTAGAATGAGAA+GGG | 0.520091 | 4_2:+57587167 | None:intergenic |
| AGAAACCGCCGCCGAAGGCG+AGG | 0.522261 | 4_2:-57590192 | Msa0610000:CDS |
| GAACCAGAAACCGCCGCCGA+AGG | 0.523723 | 4_2:-57590197 | Msa0610000:CDS |
| TTGTTGATTCTCGGCGGTGG+CGG | 0.528626 | 4_2:+57589896 | None:intergenic |
| TGTATGAGAGAAAGAGGGTC+TGG | 0.529465 | 4_2:-57587010 | Msa0610000:three_prime_UTR |
| CCGAAAACAAAGAGGAGGAG+GGG | 0.530892 | 4_2:-57588747 | Msa0610000:CDS |
| TGCCTGTTCATTAAAGGAGA+CGG | 0.531952 | 4_2:-57588712 | Msa0610000:CDS |
| ACATTTGATTAGAATGAGAA+GGG | 0.532264 | 4_2:+57588515 | None:intergenic |
| GAAAGCAGAAGGCGAAGAGG+AGG | 0.535433 | 4_2:-57587467 | Msa0610000:CDS |
| CGTCGTTCAAAAGTGCTCTC+AGG | 0.535919 | 4_2:-57587338 | Msa0610000:CDS |
| CATACACTGTTTCAAAAGAT+CGG | 0.536650 | 4_2:+57587312 | None:intergenic |
| GGCGAGGAAGATGAAGAAGA+AGG | 0.541499 | 4_2:-57590176 | Msa0610000:CDS |
| TTCTCCTGATCAAGCAGCTG+TGG | 0.544927 | 4_2:-57587497 | Msa0610000:CDS |
| TTGGGAGAACTGCATGGATG+AGG | 0.546606 | 4_2:-57587380 | Msa0610000:CDS |
| TTCTTTCTCCAAGTCGATGG+CGG | 0.550499 | 4_2:+57587228 | None:intergenic |
| ATAGAGTAAGGAACAAGGCA+AGG | 0.551902 | 4_2:-57590366 | None:intergenic |
| GCCGAAAACAAAGAGGAGGA+GGG | 0.552949 | 4_2:-57588748 | Msa0610000:CDS |
| ACCAGCTCCGGAGGCTACGA+AGG | 0.553191 | 4_2:-57588770 | Msa0610000:CDS |
| AGGATCTGATGGTTTGGCAT+CGG | 0.555085 | 4_2:+57590250 | None:intergenic |
| TGCCTATTCATGAAAGGAGG+CGG | 0.555309 | 4_2:-57590140 | Msa0610000:CDS |
| AGGAGGAAGAAGGTGAGTGC+GGG | 0.557082 | 4_2:-57587450 | Msa0610000:CDS |
| CACTTCTGATTAGAATGAGA+AGG | 0.557234 | 4_2:+57587166 | None:intergenic |
| TTCTTGTTGATTCTCGGCGG+TGG | 0.557772 | 4_2:+57589893 | None:intergenic |
| GTGCTTCTCAGCCATGAGGA+TGG | 0.557993 | 4_2:+57587264 | None:intergenic |
| TGATTGGGAAGAGGATCTGA+TGG | 0.558958 | 4_2:+57590239 | None:intergenic |
| GTGTTATGAATGGGAATAGG+TGG | 0.560517 | 4_2:+57587062 | None:intergenic |
| CGAAAACAAAGAGGAGGAGG+GGG | 0.568503 | 4_2:-57588746 | Msa0610000:CDS |
| GAATTGTGTGAAAGAGGCGA+AGG | 0.570129 | 4_2:-57588662 | Msa0610000:CDS |
| GGAGAAGCATGCTGAAGAGC+AGG | 0.570146 | 4_2:-57589967 | Msa0610000:CDS |
| GGTGGTGGTTGATTGGGAAG+AGG | 0.571966 | 4_2:+57590230 | None:intergenic |
| GTGGAGGCTCCGAAAGCAGA+AGG | 0.573231 | 4_2:-57587478 | Msa0610000:CDS |
| TGCGTGTTCATGAAAGGAGG+TGG | 0.574556 | 4_2:-57587424 | Msa0610000:CDS |
| GGGTTCTGCGTGTTCATGAA+AGG | 0.574588 | 4_2:-57587430 | Msa0610000:CDS |
| TCTGGTTCGGGAGACTCCGG+TGG | 0.575115 | 4_2:+57590212 | None:intergenic |
| GAGGAGGAAGAAGGTGAGTG+CGG | 0.578095 | 4_2:-57587451 | Msa0610000:CDS |
| AGAGGCGAAGGAGAAGAAAG+AGG | 0.580829 | 4_2:-57588650 | Msa0610000:CDS |
| TCTTCCCAATCAACCACCAC+CGG | 0.583567 | 4_2:-57590228 | Msa0610000:CDS |
| AGACGGTTGCAGAGACACCT+TGG | 0.584640 | 4_2:-57588695 | Msa0610000:CDS |
| GGACTGCAGCGACCGTGAGT+TGG | 0.586739 | 4_2:-57587590 | Msa0610000:intron |
| GAACCGCAGTGACCGTGAGT+TGG | 0.587819 | 4_2:-57588839 | Msa0610000:intron |
| TTCATCTTCCTCGCCTTCGG+CGG | 0.591064 | 4_2:+57590184 | None:intergenic |
| TGACCGTGAGTTGGAGTCAA+CGG | 0.592923 | 4_2:-57588830 | Msa0610000:CDS |
| TTACTATGGACCCATCCTCA+TGG | 0.594348 | 4_2:-57587275 | Msa0610000:CDS |
| CGTCGATTGGGAGAACTGCA+TGG | 0.595914 | 4_2:-57587386 | Msa0610000:CDS |
| GATGAAGAAGAAGGAGAATG+CGG | 0.600982 | 4_2:-57590167 | Msa0610000:CDS |
| ATGGGAGAATTGTGTGAAAG+AGG | 0.614008 | 4_2:-57588668 | Msa0610000:CDS |
| TCCGAAAGCAGAAGGCGAAG+AGG | 0.616552 | 4_2:-57587470 | Msa0610000:CDS |
| GTCGACGCCGCCGAACCCAT+CGG | 0.618932 | 4_2:-57590285 | Msa0610000:CDS |
| TAGAGTAAGGAACAAGGCAA+GGG | 0.630572 | 4_2:-57590365 | None:intergenic |
| ATGGTTTGGCATCGGATTTG+GGG | 0.630819 | 4_2:+57590258 | None:intergenic |
| GGATTCTGCCTATTCATGAA+AGG | 0.631082 | 4_2:-57590146 | Msa0610000:CDS |
| CATTTGATTAGAATGAGAAG+GGG | 0.632779 | 4_2:+57588516 | None:intergenic |
| TTCTGCCTATTCATGAAAGG+AGG | 0.642527 | 4_2:-57590143 | Msa0610000:CDS |
| AAAGGAGCAACCAGCTCCGG+AGG | 0.645801 | 4_2:-57588779 | Msa0610000:CDS |
| TTATGAACCCATTCTTAGGG+CGG | 0.646080 | 4_2:-57589988 | Msa0610000:CDS |
| CTTCTGATTAGAATGAGAAG+GGG | 0.655387 | 4_2:+57587168 | None:intergenic |
| CAATGTGCTTCTCAGCCATG+AGG | 0.656491 | 4_2:+57587260 | None:intergenic |
| TTCTGCGTGTTCATGAAAGG+AGG | 0.661603 | 4_2:-57587427 | Msa0610000:CDS |
| GAAGGCCGAAAACAAAGAGG+AGG | 0.662357 | 4_2:-57588752 | Msa0610000:CDS |
| TACGAAGGCCGAAAACAAAG+AGG | 0.665700 | 4_2:-57588755 | Msa0610000:CDS |
| AACTTTGTATGAGAGAAAGA+GGG | 0.668098 | 4_2:-57587015 | Msa0610000:three_prime_UTR |
| GGATCATGTATGCTATAACA+AGG | 0.669208 | 4_2:+57587083 | None:intergenic |
| TTACCGTTGACTCCAACTCA+CGG | 0.671368 | 4_2:+57588827 | None:intergenic |
| GCAGTTCTCCCAATCGACGA+AGG | 0.672031 | 4_2:+57587390 | None:intergenic |
| TTGCCTTAGACTCCAACTCA+CGG | 0.673830 | 4_2:+57587578 | None:intergenic |
| GGATTCTTGTTGATTCTCGG+CGG | 0.677920 | 4_2:+57589890 | None:intergenic |
| TGAGGCAGAGAAGAACAAAG+AGG | 0.681593 | 4_2:-57587362 | Msa0610000:CDS |
| CATACACTGCAACAAACGAG+TGG | 0.693657 | 4_2:+57588600 | None:intergenic |
| ACAATTCTCCCATTCAACCA+AGG | 0.704048 | 4_2:+57588678 | None:intergenic |
| TCTTGTTGAAAAGTGCGCTG+AGG | 0.705355 | 4_2:-57590054 | Msa0610000:CDS |
| CCTCGCTGAAAAGTGCTCTG+GGG | 0.729378 | 4_2:-57588626 | Msa0610000:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTTCAATTGATAAAATT+AGG | - | chr4_2:57587599-57587618 | Msa0610000:intron | 10.0% |
| !!! | TTGTTTTTTAATTTTTGATA+TGG | - | chr4_2:57587748-57587767 | Msa0610000:intron | 10.0% |
| !!! | TTTTTTTTAAACTTAATTGT+TGG | - | chr4_2:57589751-57589770 | Msa0610000:intron | 10.0% |
| !!! | TTTTATCAATTGAAATATGT+GGG | + | chr4_2:57587597-57587616 | None:intergenic | 15.0% |
| !!! | ATTTTATCAATTGAAATATG+TGG | + | chr4_2:57587598-57587617 | None:intergenic | 15.0% |
| !!! | TTCTATTTAATTTGTTGATT+TGG | - | chr4_2:57588025-57588044 | Msa0610000:intron | 15.0% |
| !!! | TCTATTTAATTTGTTGATTT+GGG | - | chr4_2:57588026-57588045 | Msa0610000:intron | 15.0% |
| !!! | TTGTTTTTAATTTTTTGACA+TGG | - | chr4_2:57589094-57589113 | Msa0610000:intron | 15.0% |
| !!! | AAAATCACTTTTGATTAGAA+GGG | + | chr4_2:57587497-57587516 | None:intergenic | 20.0% |
| !!! | AAAAATCACTTTTGATTAGA+AGG | + | chr4_2:57587498-57587517 | None:intergenic | 20.0% |
| !! | TAAGTGGAATTATTATTGAT+TGG | - | chr4_2:57587698-57587717 | Msa0610000:intron | 20.0% |
| !! | TTTGAGAATCTTTAATAATG+AGG | - | chr4_2:57587914-57587933 | Msa0610000:intron | 20.0% |
| !!! | TATTTTTTTTTTTTTGGTGG+TGG | + | chr4_2:57588289-57588308 | None:intergenic | 20.0% |
| !!! | TAGCGCTATTTTTTTTTTTT+TGG | + | chr4_2:57588295-57588314 | None:intergenic | 20.0% |
| !! | TAATAAGTGGAATTACTAAT+AGG | - | chr4_2:57589044-57589063 | Msa0610000:intron | 20.0% |
| !! | AATTAGAAAAAAAAGAAGCA+TGG | + | chr4_2:57590232-57590251 | None:intergenic | 20.0% |
| !!! | TTTAAATAGGTGTTATGAAT+GGG | + | chr4_2:57590312-57590331 | None:intergenic | 20.0% |
| !!! | TTTTAAATAGGTGTTATGAA+TGG | + | chr4_2:57590313-57590332 | None:intergenic | 20.0% |
| !!! | GTCAGTAACAAATTTTAAAT+AGG | + | chr4_2:57590325-57590344 | None:intergenic | 20.0% |
| ! | ATTATTATGAACCCATTCTT+AGG | - | chr4_2:57587370-57587389 | Msa0610000:CDS | 25.0% |
| ! | TTATTATGAACCCATTCTTA+GGG | - | chr4_2:57587371-57587390 | Msa0610000:CDS | 25.0% |
| !!! | AAATCACTTTTGATTAGAAG+GGG | + | chr4_2:57587496-57587515 | None:intergenic | 25.0% |
| !! | TCAATTTTTGTGACAATAAG+TGG | - | chr4_2:57587682-57587701 | Msa0610000:intron | 25.0% |
| ! | TTGATATGGTTATCTATAAG+TGG | - | chr4_2:57587762-57587781 | Msa0610000:intron | 25.0% |
| !! | ATAGATATGTGAATCTCTTT+TGG | - | chr4_2:57587940-57587959 | Msa0610000:intron | 25.0% |
| !! | TAGATATGTGAATCTCTTTT+GGG | - | chr4_2:57587941-57587960 | Msa0610000:intron | 25.0% |
| !!! | TGGTAATTGTATTTTGATTG+AGG | - | chr4_2:57588109-57588128 | Msa0610000:intron | 25.0% |
| !!! | GGTAATTGTATTTTGATTGA+GGG | - | chr4_2:57588110-57588129 | Msa0610000:intron | 25.0% |
| ! | AGAGTAGAGATTCTAATTAA+TGG | - | chr4_2:57588150-57588169 | Msa0610000:intron | 25.0% |
| ! | CAATGCATAATATATATGCA+AGG | - | chr4_2:57588244-57588263 | Msa0610000:intron | 25.0% |
| ! | ATAATATATATGCAAGGTCT+GGG | - | chr4_2:57588250-57588269 | Msa0610000:intron | 25.0% |
| !!! | CGCTATTTTTTTTTTTTTGG+TGG | + | chr4_2:57588292-57588311 | None:intergenic | 25.0% |
| ! | ACATTTGATTAGAATGAGAA+GGG | + | chr4_2:57588850-57588869 | None:intergenic | 25.0% |
| ! | TGATATTTGAGAATCTCTAA+TGG | - | chr4_2:57589234-57589253 | Msa0610000:intron | 25.0% |
| ! | GATATTTGAGAATCTCTAAT+GGG | - | chr4_2:57589235-57589254 | Msa0610000:intron | 25.0% |
| ! | ATATTTGAGAATCTCTAATG+GGG | - | chr4_2:57589236-57589255 | Msa0610000:intron | 25.0% |
| ! | TCACTAATTACTGAATTAGT+TGG | + | chr4_2:57589406-57589425 | None:intergenic | 25.0% |
| ! | TTCAGTAATTAGTGATTCAA+TGG | - | chr4_2:57589411-57589430 | Msa0610000:intron | 25.0% |
| ! | AGACTAGAGATTCTAATTAA+TGG | - | chr4_2:57589493-57589512 | Msa0610000:intron | 25.0% |
| ! | AACTAAATAGCTATAGGTTT+AGG | + | chr4_2:57589627-57589646 | None:intergenic | 25.0% |
| ! | CTTTTCTTTCTCCAATTCAA+TGG | + | chr4_2:57587424-57587443 | None:intergenic | 30.0% |
| ATTCTTACACAACAGCAAAT+AGG | + | chr4_2:57587832-57587851 | None:intergenic | 30.0% | |
| ATCATCCTTTACAATGCATA+TGG | - | chr4_2:57587850-57587869 | Msa0610000:intron | 30.0% | |
| TCAAAAGTCAACAAACTAAG+TGG | + | chr4_2:57587899-57587918 | None:intergenic | 30.0% | |
| GGTTGAAGTATGTGATTAAA+TGG | - | chr4_2:57587962-57587981 | Msa0610000:intron | 30.0% | |
| TTCAGTAATTAGTGATTCAG+TGG | - | chr4_2:57588089-57588108 | Msa0610000:intron | 30.0% | |
| CATAATATATATGCAAGGTC+TGG | - | chr4_2:57588249-57588268 | Msa0610000:intron | 30.0% | |
| TAATATATATGCAAGGTCTG+GGG | - | chr4_2:57588251-57588270 | Msa0610000:intron | 30.0% | |
| CATTTGATTAGAATGAGAAG+GGG | + | chr4_2:57588849-57588868 | None:intergenic | 30.0% | |
| CACATTTGATTAGAATGAGA+AGG | + | chr4_2:57588851-57588870 | None:intergenic | 30.0% | |
| ! | GTGTTGTCATTTGAAATAAG+TGG | + | chr4_2:57588952-57588971 | None:intergenic | 30.0% |
| !! | CTTTTTCTGGTCATAATAAG+TGG | - | chr4_2:57589031-57589050 | Msa0610000:intron | 30.0% |
| !! | TTGTTGATGATTTATGCCTT+AGG | - | chr4_2:57589147-57589166 | Msa0610000:intron | 30.0% |
| ! | TGAGATATGTGAATCTCTTT+TGG | - | chr4_2:57589262-57589281 | Msa0610000:intron | 30.0% |
| !! | ATGTGTGTTTGACTTCATTT+TGG | - | chr4_2:57589319-57589338 | Msa0610000:intron | 30.0% |
| TCTAGTCTCTTACTACTAAA+TGG | + | chr4_2:57589481-57589500 | None:intergenic | 30.0% | |
| AGTTGTAGAGTTAAGCTATT+TGG | + | chr4_2:57589543-57589562 | None:intergenic | 30.0% | |
| !! | ACCTATAGCTATTTAGTTTG+AGG | - | chr4_2:57589629-57589648 | Msa0610000:intron | 30.0% |
| CATACACTGTTTCAAAAGAT+CGG | + | chr4_2:57590053-57590072 | None:intergenic | 30.0% | |
| AGTAACCAGTAACAAATAAC+AGG | - | chr4_2:57590168-57590187 | Msa0610000:CDS | 30.0% | |
| ACTTCTGATTAGAATGAGAA+GGG | + | chr4_2:57590198-57590217 | None:intergenic | 30.0% | |
| TAACTTTGTATGAGAGAAAG+AGG | - | chr4_2:57590346-57590365 | Msa0610000:five_prime_UTR | 30.0% | |
| AACTTTGTATGAGAGAAAGA+GGG | - | chr4_2:57590347-57590366 | Msa0610000:five_prime_UTR | 30.0% | |
| TGCAAAATTGAAGCAGTGTA+TGG | - | chr4_2:57587335-57587354 | Msa0610000:CDS | 35.0% | |
| TGAATTGGAGAAAGAAAAGC+AGG | - | chr4_2:57587425-57587444 | Msa0610000:CDS | 35.0% | |
| AGGTACCATATGCATTGTAA+AGG | + | chr4_2:57587858-57587877 | None:intergenic | 35.0% | |
| !! | TCTGTGTGTTTGACTTCTTT+TGG | - | chr4_2:57587996-57588015 | Msa0610000:intron | 35.0% |
| !! | CTGTGTGTTTGACTTCTTTT+GGG | - | chr4_2:57587997-57588016 | Msa0610000:intron | 35.0% |
| AGTAGCGCTATTTAGTTAGT+GGG | + | chr4_2:57588192-57588211 | None:intergenic | 35.0% | |
| !!! | TTTTTTTTTTTGGTGGTGGC+CGG | + | chr4_2:57588285-57588304 | None:intergenic | 35.0% |
| ACTTCTGGTATAGAATGAGA+AGG | + | chr4_2:57588335-57588354 | None:intergenic | 35.0% | |
| CTAATGATTCGCTTGCTTAT+TGG | + | chr4_2:57588358-57588377 | None:intergenic | 35.0% | |
| !! | GCCTAGCTATTTAGTTTGAT+CGG | - | chr4_2:57588391-57588410 | Msa0610000:intron | 35.0% |
| CAGTTACTCAGATATAGTGA+TGG | - | chr4_2:57588434-57588453 | Msa0610000:intron | 35.0% | |
| !! | ACTCAGATATAGTGATGGAT+TGG | - | chr4_2:57588439-57588458 | Msa0610000:intron | 35.0% |
| !! | CTCAGATATAGTGATGGATT+GGG | - | chr4_2:57588440-57588459 | Msa0610000:intron | 35.0% |
| !! | GATGATGGGTTTGTAGTAAT+CGG | + | chr4_2:57588798-57588817 | None:intergenic | 35.0% |
| ACATGGTTGTTATGTATCAG+TGG | - | chr4_2:57589111-57589130 | Msa0610000:intron | 35.0% | |
| !!! | CTGCATTTTGATTGTTCTCT+TGG | - | chr4_2:57589437-57589456 | Msa0610000:intron | 35.0% |
| AGTTAAGCTATTTGGTTGGT+GGG | + | chr4_2:57589535-57589554 | None:intergenic | 35.0% | |
| GTAGAGTTAAGCTATTTGGT+TGG | + | chr4_2:57589539-57589558 | None:intergenic | 35.0% | |
| GCCTCAAACTAAATAGCTAT+AGG | + | chr4_2:57589633-57589652 | None:intergenic | 35.0% | |
| TTAAGTGAGATGAAACACAC+TGG | - | chr4_2:57589698-57589717 | Msa0610000:intron | 35.0% | |
| TAAGTGAGATGAAACACACT+GGG | - | chr4_2:57589699-57589718 | Msa0610000:intron | 35.0% | |
| ! | AGGAGAAACATTTTCTGTCT+TGG | + | chr4_2:57589852-57589871 | None:intergenic | 35.0% |
| !!! | CGATCTTTTGAAACAGTGTA+TGG | - | chr4_2:57590051-57590070 | Msa0610000:CDS | 35.0% |
| GATTCTCATTCCGATTACTA+TGG | - | chr4_2:57590073-57590092 | Msa0610000:CDS | 35.0% | |
| CTTCTGATTAGAATGAGAAG+GGG | + | chr4_2:57590197-57590216 | None:intergenic | 35.0% | |
| CACTTCTGATTAGAATGAGA+AGG | + | chr4_2:57590199-57590218 | None:intergenic | 35.0% | |
| GGATCATGTATGCTATAACA+AGG | + | chr4_2:57590282-57590301 | None:intergenic | 35.0% | |
| ! | TAGGTGTTATGAATGGGAAT+AGG | + | chr4_2:57590306-57590325 | None:intergenic | 35.0% |
| GATGAAGAAGAAGGAGAATG+CGG | - | chr4_2:57587195-57587214 | Msa0610000:exon | 40.0% | |
| GGATTCTGCCTATTCATGAA+AGG | - | chr4_2:57587216-57587235 | Msa0610000:CDS | 40.0% | |
| TTCTGCCTATTCATGAAAGG+AGG | - | chr4_2:57587219-57587238 | Msa0610000:CDS | 40.0% | |
| GCAGTGTATGGATGAACATT+CGG | - | chr4_2:57587347-57587366 | Msa0610000:CDS | 40.0% | |
| TTATGAACCCATTCTTAGGG+CGG | - | chr4_2:57587374-57587393 | Msa0610000:CDS | 40.0% | |
| AGAGCAGGTTACCATTGAAT+TGG | - | chr4_2:57587410-57587429 | Msa0610000:CDS | 40.0% | |
| GGAGAAAGAAAAGCAGGATT+TGG | - | chr4_2:57587431-57587450 | Msa0610000:CDS | 40.0% | |
| !! | AGGGGATTCTTGTTGATTCT+CGG | + | chr4_2:57587478-57587497 | None:intergenic | 40.0% |
| ACTGTGTATCAGTGTATGAG+AGG | - | chr4_2:57587649-57587668 | Msa0610000:intron | 40.0% | |
| TATCAGTGTATGAGAGGTTG+AGG | - | chr4_2:57587655-57587674 | Msa0610000:intron | 40.0% | |
| ATCAGTGTATGAGAGGTTGA+GGG | - | chr4_2:57587656-57587675 | Msa0610000:intron | 40.0% | |
| CAAATAGGCTTAGCTAGCTA+AGG | + | chr4_2:57587817-57587836 | None:intergenic | 40.0% | |
| TATGGTACCTAGTGCTTGTT+TGG | - | chr4_2:57587868-57587887 | Msa0610000:intron | 40.0% | |
| TACCTAGTGCTTGTTTGGTT+TGG | - | chr4_2:57587873-57587892 | Msa0610000:intron | 40.0% | |
| GAACTAGTTAGCACAGACAA+AGG | + | chr4_2:57588072-57588091 | None:intergenic | 40.0% | |
| GAGTAGCGCTATTTAGTTAG+TGG | + | chr4_2:57588193-57588212 | None:intergenic | 40.0% | |
| !!! | TTTTTTTTTTGGTGGTGGCC+GGG | + | chr4_2:57588284-57588303 | None:intergenic | 40.0% |
| GCCGATCAAACTAAATAGCT+AGG | + | chr4_2:57588395-57588414 | None:intergenic | 40.0% | |
| !! | TTTAGTTTGATCGGCTCACT+TGG | - | chr4_2:57588400-57588419 | Msa0610000:intron | 40.0% |
| !! | TCCTTTTCAGCTTGCTTTGA+GGG | + | chr4_2:57588569-57588588 | None:intergenic | 40.0% |
| TGCCTGTTCATTAAAGGAGA+CGG | - | chr4_2:57588650-57588669 | Msa0610000:CDS | 40.0% | |
| AACCGTCTCCTTTAATGAAC+AGG | + | chr4_2:57588655-57588674 | None:intergenic | 40.0% | |
| ACAATTCTCCCATTCAACCA+AGG | + | chr4_2:57588687-57588706 | None:intergenic | 40.0% | |
| ATGGGAGAATTGTGTGAAAG+AGG | - | chr4_2:57588694-57588713 | Msa0610000:CDS | 40.0% | |
| ! | ACTCGTTTGTTGCAGTGTAT+GGG | - | chr4_2:57588764-57588783 | Msa0610000:CDS | 40.0% |
| ! | AGAGAGTGGTTCTCTTTTTC+TGG | - | chr4_2:57589018-57589037 | Msa0610000:intron | 40.0% |
| CAAATAGGCTTAGCTACCTA+AGG | + | chr4_2:57589166-57589185 | None:intergenic | 40.0% | |
| ATTCTCGTGCAATCGCAAAT+AGG | + | chr4_2:57589181-57589200 | None:intergenic | 40.0% | |
| ACGAGAATGATGCTTCATCA+TGG | - | chr4_2:57589193-57589212 | Msa0610000:intron | 40.0% | |
| CGAGAATGATGCTTCATCAT+GGG | - | chr4_2:57589194-57589213 | Msa0610000:intron | 40.0% | |
| GAGTTAAGCTATTTGGTTGG+TGG | + | chr4_2:57589536-57589555 | None:intergenic | 40.0% | |
| CTAATGAATTGCTTGCGTAC+TGG | + | chr4_2:57589596-57589615 | None:intergenic | 40.0% | |
| !! | CATATTTGCTATCACGTGAG+AGG | + | chr4_2:57589658-57589677 | None:intergenic | 40.0% |
| ATGCAGTCACTCAAAGTTAG+TGG | - | chr4_2:57589675-57589694 | Msa0610000:intron | 40.0% | |
| ! | CTTTTCTTTCTCCAAGTCGA+TGG | + | chr4_2:57590140-57590159 | None:intergenic | 40.0% |
| ! | GGCTTCCTGTTATTTGTTAC+TGG | + | chr4_2:57590176-57590195 | None:intergenic | 40.0% |
| GTGTTATGAATGGGAATAGG+TGG | + | chr4_2:57590303-57590322 | None:intergenic | 40.0% | |
| ! | ATGGTTTGGCATCGGATTTG+GGG | + | chr4_2:57587107-57587126 | None:intergenic | 45.0% |
| ! | GATGGTTTGGCATCGGATTT+GGG | + | chr4_2:57587108-57587127 | None:intergenic | 45.0% |
| ! | TGATGGTTTGGCATCGGATT+TGG | + | chr4_2:57587109-57587128 | None:intergenic | 45.0% |
| ! | AGGATCTGATGGTTTGGCAT+CGG | + | chr4_2:57587115-57587134 | None:intergenic | 45.0% |
| TGATTGGGAAGAGGATCTGA+TGG | + | chr4_2:57587126-57587145 | None:intergenic | 45.0% | |
| TTCTTCATCTTCCTCGCCTT+CGG | + | chr4_2:57587184-57587203 | None:intergenic | 45.0% | |
| TGCCTATTCATGAAAGGAGG+CGG | - | chr4_2:57587222-57587241 | Msa0610000:CDS | 45.0% | |
| AACCGCCTCCTTTCATGAAT+AGG | + | chr4_2:57587227-57587246 | None:intergenic | 45.0% | |
| CAAAGACACGTTCATCGCTT+GGG | - | chr4_2:57587248-57587267 | Msa0610000:CDS | 45.0% | |
| ! | TCTTGTTGAAAAGTGCGCTG+AGG | - | chr4_2:57587308-57587327 | Msa0610000:CDS | 45.0% |
| !! | GGATTCTTGTTGATTCTCGG+CGG | + | chr4_2:57587475-57587494 | None:intergenic | 45.0% |
| ! | TGAGCTTAGCTCAGTTGGTA+TGG | - | chr4_2:57588220-57588239 | Msa0610000:intron | 45.0% |
| TCGCTTGCTTATTGGACTTC+TGG | + | chr4_2:57588350-57588369 | None:intergenic | 45.0% | |
| !! | TTACCGTTGACTCCAACTCA+CGG | + | chr4_2:57588538-57588557 | None:intergenic | 45.0% |
| !! | CTCCTTTTCAGCTTGCTTTG+AGG | + | chr4_2:57588570-57588589 | None:intergenic | 45.0% |
| TACGAAGGCCGAAAACAAAG+AGG | - | chr4_2:57588607-57588626 | Msa0610000:CDS | 45.0% | |
| GGGTTCTGCCTGTTCATTAA+AGG | - | chr4_2:57588644-57588663 | Msa0610000:CDS | 45.0% | |
| CAGAGACACCTTGGTTGAAT+GGG | - | chr4_2:57588676-57588695 | Msa0610000:CDS | 45.0% | |
| GAATTGTGTGAAAGAGGCGA+AGG | - | chr4_2:57588700-57588719 | Msa0610000:CDS | 45.0% | |
| CATACACTGCAACAAACGAG+TGG | + | chr4_2:57588765-57588784 | None:intergenic | 45.0% | |
| ! | CACTCGTTTGTTGCAGTGTA+TGG | - | chr4_2:57588763-57588782 | Msa0610000:CDS | 45.0% |
| GGGTTTGTAGTAATCGGAAC+TGG | + | chr4_2:57588792-57588811 | None:intergenic | 45.0% | |
| TGTGTGCAAGAGAAAGAGAG+TGG | - | chr4_2:57589004-57589023 | Msa0610000:intron | 45.0% | |
| TTGCCTTAGACTCCAACTCA+CGG | + | chr4_2:57589787-57589806 | None:intergenic | 45.0% | |
| ! | TCGTTTTCGTCATGCTTCAG+GGG | + | chr4_2:57589818-57589837 | None:intergenic | 45.0% |
| ! | CTCGTTTTCGTCATGCTTCA+GGG | + | chr4_2:57589819-57589838 | None:intergenic | 45.0% |
| TTCTGCGTGTTCATGAAAGG+AGG | - | chr4_2:57589935-57589954 | Msa0610000:CDS | 45.0% | |
| TGAGGCAGAGAAGAACAAAG+AGG | - | chr4_2:57590000-57590019 | Msa0610000:CDS | 45.0% | |
| GAGGATGGGTCCATAGTAAT+CGG | + | chr4_2:57590086-57590105 | None:intergenic | 45.0% | |
| TTACTATGGACCCATCCTCA+TGG | - | chr4_2:57590087-57590106 | Msa0610000:CDS | 45.0% | |
| TTCTTTCTCCAAGTCGATGG+CGG | + | chr4_2:57590137-57590156 | None:intergenic | 45.0% | |
| TGTATGAGAGAAAGAGGGTC+TGG | - | chr4_2:57590352-57590371 | Msa0610000:five_prime_UTR | 45.0% | |
| !! | TAAAAACAATAATTTAAAAA+GGG | + | chr4_2:57587532-57587551 | None:intergenic | 5.0% |
| !! | ATAAAAACAATAATTTAAAA+AGG | + | chr4_2:57587533-57587552 | None:intergenic | 5.0% |
| !! | ATGAAATATAAAATAAAAAT+AGG | + | chr4_2:57588888-57588907 | None:intergenic | 5.0% |
| !! | TTGGGGTTTTCCGATGGGTT+CGG | + | chr4_2:57587090-57587109 | None:intergenic | 50.0% |
| !! | CGGATTTGGGGTTTTCCGAT+GGG | + | chr4_2:57587095-57587114 | None:intergenic | 50.0% |
| !! | TCGGATTTGGGGTTTTCCGA+TGG | + | chr4_2:57587096-57587115 | None:intergenic | 50.0% |
| GGGAAGAGGATCTGATGGTT+TGG | + | chr4_2:57587121-57587140 | None:intergenic | 50.0% | |
| TCTTCCCAATCAACCACCAC+CGG | - | chr4_2:57587134-57587153 | Msa0610000:three_prime_UTR | 50.0% | |
| GGCGAGGAAGATGAAGAAGA+AGG | - | chr4_2:57587186-57587205 | Msa0610000:exon | 50.0% | |
| GCAAAGACACGTTCATCGCT+TGG | - | chr4_2:57587247-57587266 | Msa0610000:CDS | 50.0% | |
| TGCTTCTCCGCCCTAAGAAT+GGG | + | chr4_2:57587384-57587403 | None:intergenic | 50.0% | |
| ATGCTTCTCCGCCCTAAGAA+TGG | + | chr4_2:57587385-57587404 | None:intergenic | 50.0% | |
| !! | TTCTTGTTGATTCTCGGCGG+TGG | + | chr4_2:57587472-57587491 | None:intergenic | 50.0% |
| GGCCAAACCAAACAAGCACT+AGG | + | chr4_2:57587878-57587897 | None:intergenic | 50.0% | |
| ! | AAGGTCTGGGGTTCAAATCC+CGG | - | chr4_2:57588263-57588282 | Msa0610000:intron | 50.0% |
| !! | ATGGATTGGGACGAGACACT+GGG | - | chr4_2:57588453-57588472 | Msa0610000:intron | 50.0% |
| ! | TGACCGTGAGTTGGAGTCAA+CGG | - | chr4_2:57588532-57588551 | Msa0610000:CDS | 50.0% |
| GCCCTCAAAGCAAGCTGAAA+AGG | - | chr4_2:57588565-57588584 | Msa0610000:CDS | 50.0% | |
| TGAAAAGGAGCAACCAGCTC+CGG | - | chr4_2:57588580-57588599 | Msa0610000:CDS | 50.0% | |
| GAAGGCCGAAAACAAAGAGG+AGG | - | chr4_2:57588610-57588629 | Msa0610000:CDS | 50.0% | |
| GCCGAAAACAAAGAGGAGGA+GGG | - | chr4_2:57588614-57588633 | Msa0610000:CDS | 50.0% | |
| !!! | CCCCTCCTCCTCTTTGTTTT+CGG | + | chr4_2:57588618-57588637 | None:intergenic | 50.0% |
| CCGAAAACAAAGAGGAGGAG+GGG | - | chr4_2:57588615-57588634 | Msa0610000:CDS | 50.0% | |
| CGAAAACAAAGAGGAGGAGG+GGG | - | chr4_2:57588616-57588635 | Msa0610000:CDS | 50.0% | |
| GCAGAGACACCTTGGTTGAA+TGG | - | chr4_2:57588675-57588694 | Msa0610000:CDS | 50.0% | |
| AGAGGCGAAGGAGAAGAAAG+AGG | - | chr4_2:57588712-57588731 | Msa0610000:CDS | 50.0% | |
| !! | ACCTCGCTGAAAAGTGCTCT+GGG | - | chr4_2:57588735-57588754 | Msa0610000:CDS | 50.0% |
| ! | CGCTTCTCGGTCTTGATGAT+GGG | + | chr4_2:57588812-57588831 | None:intergenic | 50.0% |
| !! | TCTCTTGGTAACGAGCAGTG+AGG | - | chr4_2:57589452-57589471 | Msa0610000:intron | 50.0% |
| GCGTACTGGACTTCTGGTAT+AGG | + | chr4_2:57589582-57589601 | None:intergenic | 50.0% | |
| TTGCTTGCGTACTGGACTTC+TGG | + | chr4_2:57589588-57589607 | None:intergenic | 50.0% | |
| ! | GCTCGTTTTCGTCATGCTTC+AGG | + | chr4_2:57589820-57589839 | None:intergenic | 50.0% |
| TTCTCCTGATCAAGCAGCTG+TGG | - | chr4_2:57589865-57589884 | Msa0610000:intron | 50.0% | |
| TCCTCTTCGCCTTCTGCTTT+CGG | + | chr4_2:57589896-57589915 | None:intergenic | 50.0% | |
| GGGTTCTGCGTGTTCATGAA+AGG | - | chr4_2:57589932-57589951 | Msa0610000:CDS | 50.0% | |
| TGCGTGTTCATGAAAGGAGG+TGG | - | chr4_2:57589938-57589957 | Msa0610000:CDS | 50.0% | |
| ! | CAGAGACACCTTCGTCGATT+GGG | - | chr4_2:57589964-57589983 | Msa0610000:CDS | 50.0% |
| TTGGGAGAACTGCATGGATG+AGG | - | chr4_2:57589982-57590001 | Msa0610000:CDS | 50.0% | |
| !! | CGTCGTTCAAAAGTGCTCTC+AGG | - | chr4_2:57590024-57590043 | Msa0610000:CDS | 50.0% |
| TGCTTCTCAGCCATGAGGAT+GGG | + | chr4_2:57590100-57590119 | None:intergenic | 50.0% | |
| CAATGTGCTTCTCAGCCATG+AGG | + | chr4_2:57590105-57590124 | None:intergenic | 50.0% | |
| ! | GGTGGTGGTTGATTGGGAAG+AGG | + | chr4_2:57587135-57587154 | None:intergenic | 55.0% |
| ! | GACTCCGGTGGTGGTTGATT+GGG | + | chr4_2:57587141-57587160 | None:intergenic | 55.0% |
| ! | AGACTCCGGTGGTGGTTGAT+TGG | + | chr4_2:57587142-57587161 | None:intergenic | 55.0% |
| !! | GTTTCTGGTTCGGGAGACTC+CGG | + | chr4_2:57587156-57587175 | None:intergenic | 55.0% |
| TTCATCTTCCTCGCCTTCGG+CGG | + | chr4_2:57587181-57587200 | None:intergenic | 55.0% | |
| ! | GGAGAAGCATGCTGAAGAGC+AGG | - | chr4_2:57587395-57587414 | Msa0610000:CDS | 55.0% |
| !! | TTGTTGATTCTCGGCGGTGG+CGG | + | chr4_2:57587469-57587488 | None:intergenic | 55.0% |
| CCAACTGAGCTAAGCTCACG+AGG | + | chr4_2:57588218-57588237 | None:intergenic | 55.0% | |
| CCTCGTGAGCTTAGCTCAGT+TGG | - | chr4_2:57588215-57588234 | Msa0610000:intron | 55.0% | |
| !! | GATGGATTGGGACGAGACAC+TGG | - | chr4_2:57588452-57588471 | Msa0610000:intron | 55.0% |
| ACTCCAACTCACGGTCACTG+CGG | + | chr4_2:57588529-57588548 | None:intergenic | 55.0% | |
| ! | TTTTCGGCCTTCGTAGCCTC+CGG | + | chr4_2:57588602-57588621 | None:intergenic | 55.0% |
| GGCCGAAAACAAAGAGGAGG+AGG | - | chr4_2:57588613-57588632 | Msa0610000:CDS | 55.0% | |
| AAAGAGGAGGAGGGGGATTG+CGG | - | chr4_2:57588623-57588642 | Msa0610000:CDS | 55.0% | |
| AGACGGTTGCAGAGACACCT+TGG | - | chr4_2:57588667-57588686 | Msa0610000:CDS | 55.0% | |
| !! | GACCTCGCTGAAAAGTGCTC+TGG | - | chr4_2:57588734-57588753 | Msa0610000:CDS | 55.0% |
| !! | CCTCGCTGAAAAGTGCTCTG+GGG | - | chr4_2:57588736-57588755 | Msa0610000:CDS | 55.0% |
| GCGCTTCTCGGTCTTGATGA+TGG | + | chr4_2:57588813-57588832 | None:intergenic | 55.0% | |
| TTGCTCTTCGACGCGCTTCT+CGG | + | chr4_2:57588825-57588844 | None:intergenic | 55.0% | |
| ! | CGACCGTGAGTTGGAGTCTA+AGG | - | chr4_2:57589781-57589800 | Msa0610000:intron | 55.0% |
| TCCTGATCAAGCAGCTGTGG+AGG | - | chr4_2:57589868-57589887 | Msa0610000:intron | 55.0% | |
| TCCGAAAGCAGAAGGCGAAG+AGG | - | chr4_2:57589892-57589911 | Msa0610000:CDS | 55.0% | |
| GAAAGCAGAAGGCGAAGAGG+AGG | - | chr4_2:57589895-57589914 | Msa0610000:CDS | 55.0% | |
| GAAGGCGAAGAGGAGGAAGA+AGG | - | chr4_2:57589902-57589921 | Msa0610000:CDS | 55.0% | |
| GAGGAGGAAGAAGGTGAGTG+CGG | - | chr4_2:57589911-57589930 | Msa0610000:CDS | 55.0% | |
| AGGAGGAAGAAGGTGAGTGC+GGG | - | chr4_2:57589912-57589931 | Msa0610000:CDS | 55.0% | |
| GCAGAGACACCTTCGTCGAT+TGG | - | chr4_2:57589963-57589982 | Msa0610000:CDS | 55.0% | |
| GCAGTTCTCCCAATCGACGA+AGG | + | chr4_2:57589975-57589994 | None:intergenic | 55.0% | |
| ! | CGTCGATTGGGAGAACTGCA+TGG | - | chr4_2:57589976-57589995 | Msa0610000:CDS | 55.0% |
| GTGCTTCTCAGCCATGAGGA+TGG | + | chr4_2:57590101-57590120 | None:intergenic | 55.0% | |
| ! | AGAACAAGCCGCCATCGACT+TGG | - | chr4_2:57590126-57590145 | Msa0610000:CDS | 55.0% |
| !! | GGGTTTTCCGATGGGTTCGG+CGG | + | chr4_2:57587087-57587106 | None:intergenic | 60.0% |
| !! | TTCGGCGGCGGTTTCTGGTT+CGG | + | chr4_2:57587166-57587185 | None:intergenic | 60.0% |
| GAACCGCAGTGACCGTGAGT+TGG | - | chr4_2:57588523-57588542 | Msa0610000:CDS | 60.0% | |
| AAAGGAGCAACCAGCTCCGG+AGG | - | chr4_2:57588583-57588602 | Msa0610000:CDS | 60.0% | |
| AAGAGGAGGAGGGGGATTGC+GGG | - | chr4_2:57588624-57588643 | Msa0610000:CDS | 60.0% | |
| !! | CCCCAGAGCACTTTTCAGCG+AGG | + | chr4_2:57588739-57588758 | None:intergenic | 60.0% |
| GCCTCCACAGCTGCTTGATC+AGG | + | chr4_2:57589872-57589891 | None:intergenic | 60.0% | |
| GTGGAGGCTCCGAAAGCAGA+AGG | - | chr4_2:57589884-57589903 | Msa0610000:CDS | 60.0% | |
| !! | TCTGGTTCGGGAGACTCCGG+TGG | + | chr4_2:57587153-57587172 | None:intergenic | 65.0% |
| !! | TCGGCGGCGGTTTCTGGTTC+GGG | + | chr4_2:57587165-57587184 | None:intergenic | 65.0% |
| GAACCAGAAACCGCCGCCGA+AGG | - | chr4_2:57587165-57587184 | Msa0610000:three_prime_UTR | 65.0% | |
| ATCTTCCTCGCCTTCGGCGG+CGG | + | chr4_2:57587178-57587197 | None:intergenic | 65.0% | |
| ! | TTGATTCTCGGCGGTGGCGG+CGG | + | chr4_2:57587466-57587485 | None:intergenic | 65.0% |
| ACCAGCTCCGGAGGCTACGA+AGG | - | chr4_2:57588592-57588611 | Msa0610000:CDS | 65.0% | |
| GGACTGCAGCGACCGTGAGT+TGG | - | chr4_2:57589772-57589791 | Msa0610000:intron | 65.0% | |
| GTCGACGCCGCCGAACCCAT+CGG | - | chr4_2:57587077-57587096 | Msa0610000:three_prime_UTR | 70.0% | |
| GGTTCGGGAGACTCCGGTGG+TGG | + | chr4_2:57587150-57587169 | None:intergenic | 70.0% | |
| TCGCCTTCGGCGGCGGTTTC+TGG | + | chr4_2:57587171-57587190 | None:intergenic | 70.0% | |
| AGAAACCGCCGCCGAAGGCG+AGG | - | chr4_2:57587170-57587189 | Msa0610000:three_prime_UTR | 70.0% | |
| GCCTTCGTAGCCTCCGGAGC+TGG | + | chr4_2:57588596-57588615 | None:intergenic | 70.0% | |
| ! | ATTCTCGGCGGTGGCGGCGG+CGG | + | chr4_2:57587463-57587482 | None:intergenic | 75.0% |
| !! | CTCGGCGGTGGCGGCGGCGG+CGG | + | chr4_2:57587460-57587479 | None:intergenic | 90.0% |
| !! | GGCGGTGGCGGCGGCGGCGG+CGG | + | chr4_2:57587457-57587476 | None:intergenic | 95.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 57587009 | 57590375 | 57587009 | ID=Msa0610000;Name=Msa0610000 |
| chr4_2 | mRNA | 57587009 | 57590375 | 57587009 | ID=Msa0610000-mRNA-1;Parent=Msa0610000;Name=Msa0610000-mRNA-1;_AED=0.08;_eAED=0.08;_QI=66|1|1|1|1|1|3|189|391 |
| chr4_2 | exon | 57587009 | 57587603 | 57587009 | ID=Msa0610000-mRNA-1:exon:14992;Parent=Msa0610000-mRNA-1 |
| chr4_2 | exon | 57588517 | 57588852 | 57588517 | ID=Msa0610000-mRNA-1:exon:14991;Parent=Msa0610000-mRNA-1 |
| chr4_2 | exon | 57589876 | 57590375 | 57589876 | ID=Msa0610000-mRNA-1:exon:14990;Parent=Msa0610000-mRNA-1 |
| chr4_2 | five_prime_UTR | 57590310 | 57590375 | 57590310 | ID=Msa0610000-mRNA-1:five_prime_utr;Parent=Msa0610000-mRNA-1 |
| chr4_2 | CDS | 57589876 | 57590309 | 57589876 | ID=Msa0610000-mRNA-1:cds;Parent=Msa0610000-mRNA-1 |
| chr4_2 | CDS | 57588517 | 57588852 | 57588517 | ID=Msa0610000-mRNA-1:cds;Parent=Msa0610000-mRNA-1 |
| chr4_2 | CDS | 57587198 | 57587603 | 57587198 | ID=Msa0610000-mRNA-1:cds;Parent=Msa0610000-mRNA-1 |
| chr4_2 | three_prime_UTR | 57587009 | 57587197 | 57587009 | ID=Msa0610000-mRNA-1:three_prime_utr;Parent=Msa0610000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
