AlfalfaGEDB | Msa0694980

M. sativa cultivar zhongmu-4 / Msa0694980

KEGG: K07555
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0033615 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043461 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0070071 GO:0071840
PFAM: PF06644.14

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0694980	XP_013456903.1	93.600	250	16	0	1	250	1	250	6.90e-175	491

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0694980	sp\|Q5TC12\|ATPF1_HUMAN	32.000	175	116	2	78	250	142	315	7.35e-18	84.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0694980	A0A072UME8	93.600	250	16	0	1	250	1	250	3.30e-175	491

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0528610	Msa0694980	0.801852	7.404258e-49	-8.615850e-47
Msa0694980	Msa0946280	0.803721	3.045008e-49	-8.615850e-47
Msa0694980	Msa1244720	0.809617	1.732142e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0694980	MtrunA17_Chr4g0046121	93.600	250	16	0	1	250	1	250	6.35e-179	491

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0694980	AT2G34050.1	73.206	209	56	0	42	250	40	248	3.08e-118	338

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Find 87 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGGACTTGGTACTGATCCG+TGG	0.611446	4_4:+64388720	Msa0694980:CDS
AAGGGAATGTCATAGAATGT+TGG	0.484972	4_4:+64389026	Msa0694980:three_prime_UTR
AATTTAATGAATTTGAGAAT+TGG	0.387189	4_4:-64386135	None:intergenic
ACAAAGGAATGACAAAATAT+CGG	0.436244	4_4:-64386958	None:intergenic
ACCCCATTTCAGAAAATTGC+AGG	0.375367	4_4:-64386331	None:intergenic
AGAAAATTGCAGGGGAGTTG+CGG	0.514104	4_4:-64386321	None:intergenic
AGAAACTGTTGTGAAAGAAT+GGG	0.537123	4_4:-64386268	None:intergenic
AGAAGCTGTCCAATTGAAAA+TGG	0.323271	4_4:-64388918	None:intergenic
AGACATTACATCATCCCAAA+TGG	0.489838	4_4:-64386475	None:intergenic
AGCAAGTCTTTATCACTTGC+TGG	0.405466	4_4:+64386834	Msa0694980:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAAACTGTTGTGAAAGAAT+GGG	-	chr4_4:64386271-64386290	None:intergenic	30.0%
ATATCTACGATAGAATCCAA+TGG	-	chr4_4:64386417-64386436	None:intergenic	30.0%
ATTCTATCGTAGATATTGAG+AGG	+	chr4_4:64386421-64386440	Msa0694980:CDS	30.0%
CTGAAAATATCACTTCCATT+TGG	+	chr4_4:64386460-64386479	Msa0694980:CDS	30.0%
GAGAAATTGAAAAGTTGAAG+TGG	+	chr4_4:64387234-64387253	Msa0694980:intron	30.0%
GTAAAAAAAAAGGCCATTCA+AGG	+	chr4_4:64387273-64387292	Msa0694980:intron	30.0%
ACAAAGTTTATTGGTAGACA+CGG	-	chr4_4:64387421-64387440	None:intergenic	30.0%
TTCTATATATCTGATCCTGA+AGG	-	chr4_4:64387585-64387604	None:intergenic	30.0%
ATATTTCAATCAGGAACACA+AGG	+	chr4_4:64387878-64387897	Msa0694980:intron	30.0%
AAACTGTTCAAACTTCAAAG+TGG	+	chr4_4:64387978-64387997	Msa0694980:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	64386050	64389187	64386050	ID=Msa0694980;Name=Msa0694980
chr4_4	mRNA	64386050	64389187	64386050	ID=Msa0694980-mRNA-1;Parent=Msa0694980;Name=Msa0694980-mRNA-1;_AED=0.02;_eAED=0.02;_QI=130\|1\|1\|1\|1\|1\|4\|270\|250
chr4_4	exon	64386050	64386488	64386050	ID=Msa0694980-mRNA-1:exon:18377;Parent=Msa0694980-mRNA-1
chr4_4	exon	64386796	64386875	64386796	ID=Msa0694980-mRNA-1:exon:18378;Parent=Msa0694980-mRNA-1
chr4_4	exon	64386958	64387016	64386958	ID=Msa0694980-mRNA-1:exon:18379;Parent=Msa0694980-mRNA-1
chr4_4	exon	64388613	64389187	64388613	ID=Msa0694980-mRNA-1:exon:18380;Parent=Msa0694980-mRNA-1
chr4_4	five_prime_UTR	64386050	64386179	64386050	ID=Msa0694980-mRNA-1:five_prime_utr;Parent=Msa0694980-mRNA-1
chr4_4	CDS	64386180	64386488	64386180	ID=Msa0694980-mRNA-1:cds;Parent=Msa0694980-mRNA-1
chr4_4	CDS	64386796	64386875	64386796	ID=Msa0694980-mRNA-1:cds;Parent=Msa0694980-mRNA-1
chr4_4	CDS	64386958	64387016	64386958	ID=Msa0694980-mRNA-1:cds;Parent=Msa0694980-mRNA-1
chr4_4	CDS	64388613	64388917	64388613	ID=Msa0694980-mRNA-1:cds;Parent=Msa0694980-mRNA-1
chr4_4	three_prime_UTR	64388918	64389187	64388918	ID=Msa0694980-mRNA-1:three_prime_utr;Parent=Msa0694980-mRNA-1

Gene Sequence

>Msa0694980

ATGCAAAGAGTATCTTCAACCTCCAGAATTTGGAGAACCATAGCATCCAATGCCAGAAAAAACATCTCAATCTTCAACGAACCTCATGCCCATTCTTTCACAACAGTTTCTGCCGCAGCAACTTCCCAGAAATTCCATCAACCGCAACTCCCCTGCAATTTTCTGAAATGGGGTTCGCTTGGATTCTGCAGGACGTCAAGATTCGCTACTGGCTTCAATCCTTTGCAACTCAAGCCATTGGATTCTATCGTAGATATTGAGAGGCTCAAGGATCGGGATCCTGAAAATATCACTTCCATTTGGGATGATTATCACATAGGTAGAGGTCATATTGGAGCAACTATGAAAGCAAGTCTTTATCACTTGCTGGAGCATAGAGCTAAAGAATGCCGATATTTTGTCATTCCTTTGTGGAGGGGAAGTGGTTATATAACAATGTTTGTTCAAGTTCAGACGCCGCACATGCTTTTTACTGGTCTTGAAGATTACAAGGCTAGAGGAACACAAGCATCTCCCTACTATACTGTATCATTTTACACAGAATTTGCAGAGAGCAAGGACTTGGTACTGATCCGTGGGGATGTTGTATTTACCAGCAAGCTGACTGACTCGGAGGCGAAATGGCTTGTGGAAACTGCTCAGTCTTTTTATTTGAATGATGTGAGGTACAAACTAGTCGAGAGATTCAATAAAGATCCAAGTGAATTTGAGTTCAAGGATGTCCTGCGAGCATTGAACATGCCTATTTTGTAA

Protein sequence

>Msa0694980

MQRVSSTSRIWRTIASNARKNISIFNEPHAHSFTTVSAAATSQKFHQPQLPCNFLKWGSLGFCRTSRFATGFNPLQLKPLDSIVDIERLKDRDPENITSIWDDYHIGRGHIGATMKASLYHLLEHRAKECRYFVIPLWRGSGYITMFVQVQTPHMLFTGLEDYKARGTQASPYYTVSFYTEFAESKDLVLIRGDVVFTSKLTDSEAKWLVETAQSFYLNDVRYKLVERFNKDPSEFEFKDVLRALNMPIL*