AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0695340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0695340 MtrunA17_Chr4g0046841 98.710 620 8 0 1 620 1 620 0.0 1262
Msa0695340 MtrunA17_Chr2g0277061 52.658 602 261 9 21 614 11 596 0.0 614
Msa0695340 MtrunA17_Chr8g0385121 51.410 603 272 9 20 617 8 594 0.0 573
Msa0695340 MtrunA17_Chr8g0377631 41.491 617 320 11 25 611 11 616 8.41e-160 472
Msa0695340 MtrunA17_Chr3g0122211 40.492 610 335 9 23 611 15 617 2.81e-156 462
Msa0695340 MtrunA17_Chr8g0385131 43.046 604 290 11 21 616 12 569 2.82e-153 453
Msa0695340 MtrunA17_Chr8g0391931 42.379 597 323 10 22 611 6 588 8.86e-148 440
Msa0695340 MtrunA17_Chr8g0385181 40.735 599 292 14 21 613 12 553 1.65e-143 427
Msa0695340 MtrunA17_Chr4g0013011 38.512 605 326 11 21 611 10 582 4.45e-133 402
Msa0695340 MtrunA17_Chr2g0284691 38.602 601 297 13 25 611 22 564 8.93e-128 387
Msa0695340 MtrunA17_Chr7g0274871 89.441 161 13 1 2 162 107 263 4.37e-95 293
Msa0695340 MtrunA17_Chr8g0385171 40.566 318 148 9 21 335 12 291 3.59e-63 211
Msa0695340 MtrunA17_Chr8g0385161 40.636 283 133 7 339 619 1 250 2.22e-55 188
Msa0695340 MtrunA17_Chr7g0274901 88.235 85 9 1 382 465 1 85 1.59e-42 147
Msa0695340 MtrunA17_Chr7g0274911 79.710 69 11 1 527 592 12 80 3.66e-28 110
Msa0695340 MtrunA17_Chr7g0274881 92.593 54 4 0 190 243 1 54 9.38e-27 103
Msa0695340 MtrunA17_Chr8g0385141 47.368 114 58 2 127 239 12 124 2.51e-26 105
Msa0695340 MtrunA17_Chr7g0274891 93.548 31 2 0 335 365 40 70 4.43e-14 67.4
Msa0695340 MtrunA17_Chr8g0385151 56.522 46 20 0 291 336 3 48 1.05e-12 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0695340 AT1G28380.1 62.439 615 210 9 16 620 9 612 0.0 765
Msa0695340 AT4G24290.2 51.639 610 265 10 21 619 10 600 0.0 601
Msa0695340 AT4G24290.3 51.639 610 265 10 21 619 10 600 0.0 601
Msa0695340 AT1G14780.1 38.961 616 342 13 23 611 10 618 1.63e-137 415
Msa0695340 AT1G29690.1 38.833 600 290 11 25 611 24 559 2.06e-133 402
Msa0695340 AT4G24290.1 49.853 339 147 7 21 348 10 336 3.29e-102 314

Find 159 sgRNAs with CRISPR-Local

Find 314 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCGACAAAATTAAGCATTT+TGG 0.150769 4_4:+64857325 None:intergenic
TGTGATCTTCTGAAATTTCT+AGG 0.199569 4_4:+64857738 None:intergenic
CACGGTATTAACATAAAGTT+TGG 0.221178 4_4:+64858083 None:intergenic
TCTATATACTATTCTTTATT+AGG 0.229619 4_4:+64856998 None:intergenic
GTCACTTCAGTTCACTCTTA+TGG 0.231370 4_4:-64858109 Msa0695340:CDS
ACTAAGAGCCTTGCCTTTGA+TGG 0.266531 4_4:-64859536 Msa0695340:CDS
TTCAGGTTCATTGAAAAGTA+TGG 0.283487 4_4:-64859068 Msa0695340:intron
CAGAGGATCCACCAGGATAT+TGG 0.288457 4_4:-64857280 Msa0695340:CDS
CAGCATCTTTCAGAGGTTCC+AGG 0.308912 4_4:-64857764 Msa0695340:CDS
TTAATAGATAAGGGAACATT+AGG 0.309328 4_4:+64860713 None:intergenic
GGCTATATCAGGAAAATTAA+AGG 0.311318 4_4:-64858880 Msa0695340:intron
TGATGAAGTTCTTCTATTGC+AGG 0.314788 4_4:+64858225 None:intergenic
GTTGAGAGCCACTGGTTATA+AGG 0.316965 4_4:+64858486 None:intergenic
TATTCGACCATAAGTATAAA+AGG 0.318647 4_4:-64858143 Msa0695340:CDS
TTCAATAAGCAGGTTGATTC+GGG 0.318983 4_4:-64857857 Msa0695340:intron
GTCAATCCTGCGGCTATATC+AGG 0.325598 4_4:-64858891 Msa0695340:CDS
CTGAATTCTGTCCCAGGAAA+TGG 0.330279 4_4:-64858408 Msa0695340:CDS
TTGAACTACTATTGTCAATA+TGG 0.331381 4_4:+64860774 None:intergenic
AGATGTAGACTCATCCATTC+TGG 0.349924 4_4:+64857613 None:intergenic
TCACTTCAGTTCACTCTTAT+GGG 0.350996 4_4:-64858108 Msa0695340:CDS
GGCGTAAACCGACCTGAATA+TGG 0.355136 4_4:-64857058 Msa0695340:three_prime_UTR
ACAATGAATTTGCCATATTC+AGG 0.359445 4_4:+64857046 None:intergenic
TCAACTTTAGATTGTTTCTC+AGG 0.363374 4_4:+64857398 None:intergenic
TCGTAGTAGCCTCGGCCATC+TGG 0.365164 4_4:+64857695 None:intergenic
CGGCCATCTGGTTCGTCAAT+AGG 0.368985 4_4:+64857707 None:intergenic
TTTCAATAAGCAGGTTGATT+CGG 0.374923 4_4:-64857858 Msa0695340:intron
TTGGTTTGAGGTTAAGCTAA+TGG 0.376476 4_4:-64857576 Msa0695340:CDS
TCGGGAAACCGGCCGGTAAC+AGG 0.378523 4_4:-64857839 Msa0695340:CDS
AGAGGATCCACCAGGATATT+GGG 0.391881 4_4:-64857279 Msa0695340:CDS
TGTCGAACATGCTATTGAAT+TGG 0.395267 4_4:+64859591 None:intergenic
TAATGTCATATCAATGTCTT+TGG 0.396557 4_4:-64858448 Msa0695340:CDS
TGGTTTGAGGTTAAGCTAAT+GGG 0.397784 4_4:-64857575 Msa0695340:CDS
GAATTCAGTAATGAAGTAAT+AGG 0.399717 4_4:+64858423 None:intergenic
TCAACCTCATCTAGAAAATC+AGG 0.407263 4_4:-64857470 Msa0695340:CDS
TGTGACAAAGGCTTGGTTTG+AGG 0.418183 4_4:-64857588 Msa0695340:CDS
AGCAGGTTGATTCGGGAAAC+CGG 0.418321 4_4:-64857850 Msa0695340:intron
AAAGACATTGATATGACATT+AGG 0.419683 4_4:+64858450 None:intergenic
GATGCTGAAGATGGATTGAT+AGG 0.420463 4_4:+64857780 None:intergenic
AACAGACAACTATCTTTGTC+GGG 0.421260 4_4:-64859629 Msa0695340:CDS
ATGGTACACACGTAGTTGTT+GGG 0.421463 4_4:-64859049 Msa0695340:CDS
CTTAGTGGAAGCTGCATCCC+TGG 0.425444 4_4:+64859553 None:intergenic
GGATGATCATACAAAGCTTA+GGG 0.425872 4_4:-64858753 Msa0695340:CDS
CAATATCCTGGTGGATCCTC+TGG 0.428546 4_4:+64857281 None:intergenic
CGTAGTTGTTGGGGTGAAGA+TGG 0.431793 4_4:-64859039 Msa0695340:CDS
TTATCAGACTTAATAGATAA+GGG 0.435251 4_4:+64860704 None:intergenic
GCTTTCTCAGCTGCTAATTG+AGG 0.435446 4_4:+64860869 None:intergenic
ACTAATAGCTATGGAAATGC+AGG 0.435774 4_4:-64860899 Msa0695340:CDS
ACTTACTCGGCAAGAGCAGC+AGG 0.435956 4_4:+64859422 None:intergenic
CGACAATGGGCACCGATGTA+TGG 0.437293 4_4:-64858180 Msa0695340:CDS
TTTATCAGACTTAATAGATA+AGG 0.439387 4_4:+64860703 None:intergenic
TTATCTATTAAGTCTGATAA+AGG 0.439839 4_4:-64860701 Msa0695340:CDS
AGGATGATCATACAAAGCTT+AGG 0.446411 4_4:-64858754 Msa0695340:CDS
TTGGGAGCCCTTCTTGGCAC+AGG 0.449347 4_4:+64857344 None:intergenic
AACAAACCTCCGTCCCTTGT+TGG 0.451722 4_4:-64858719 Msa0695340:CDS
CAACAGACAACTATCTTTGT+CGG 0.454285 4_4:-64859630 Msa0695340:CDS
AACAGGTATTCGTTTATACT+TGG 0.457606 4_4:-64857822 Msa0695340:CDS
ATCAAAGGCAAGGCTCTTAG+TGG 0.462014 4_4:+64859538 None:intergenic
GTTAATAATACTAATAGCTA+TGG 0.462044 4_4:-64860908 Msa0695340:CDS
AACCTCCGTCCCTTGTTGGC+AGG 0.463366 4_4:-64858715 Msa0695340:CDS
CTGGAGCTATTGTATTGTAC+AGG 0.472485 4_4:+64857632 None:intergenic
GTTTCAGTTGCCACGACAAT+GGG 0.473101 4_4:-64858193 Msa0695340:CDS
ACGGTATTAACATAAAGTTT+GGG 0.475299 4_4:+64858084 None:intergenic
CTGATAAAGGTGATTGTACC+AGG 0.476222 4_4:-64860688 Msa0695340:CDS
GGAGCCCTTCTTGGCACAGG+TGG 0.479630 4_4:+64857347 None:intergenic
CATCTATTGTGACAAAGGCT+TGG 0.480707 4_4:-64857595 Msa0695340:CDS
TATGTAAGTTGAACTCTTCA+CGG 0.481674 4_4:+64860971 None:intergenic
GTGGTCCACCTGTGCCAAGA+AGG 0.484031 4_4:-64857352 Msa0695340:CDS
TATAAACGAATACCTGTTAC+CGG 0.485389 4_4:+64857827 None:intergenic
GAGAAAGCTGTGAGTGTGAT+TGG 0.485451 4_4:-64860854 Msa0695340:CDS
CCTCTGAAAGATGCTGAAGA+TGG 0.486026 4_4:+64857771 None:intergenic
CGAAAATTCGCAGATCAGAA+TGG 0.487617 4_4:-64857502 Msa0695340:CDS
CCAGGATATTGGGTTGTCAC+TGG 0.487824 4_4:-64857269 Msa0695340:CDS
CTTTCTTATCATTCTATGTG+TGG 0.488535 4_4:-64861000 Msa0695340:five_prime_UTR
TATGGTACACACGTAGTTGT+TGG 0.495177 4_4:-64859050 Msa0695340:CDS
AGAGCCTTGCCTTTGATGGA+TGG 0.511034 4_4:-64859532 Msa0695340:CDS
GGTATTCGTTTATACTTGGA+AGG 0.511213 4_4:-64857818 Msa0695340:CDS
AGCAATTTCTGCAGTTCAGT+CGG 0.511584 4_4:+64858966 None:intergenic
ATGTAAGTTGAACTCTTCAC+GGG 0.514173 4_4:+64860972 None:intergenic
GAAAATTCGCAGATCAGAAT+GGG 0.514979 4_4:-64857501 Msa0695340:CDS
TAGTAAGCATTTCTGTTCGA+AGG 0.519900 4_4:-64858530 Msa0695340:CDS
AGGTCATAACACTTCTATGA+TGG 0.520173 4_4:+64861111 None:intergenic
TTACAATTGGCCTGCCAACA+AGG 0.520191 4_4:+64858705 None:intergenic
GGTGCAAAGTTATGTGTAGA+AGG 0.521969 4_4:-64857248 Msa0695340:CDS
AGAGCCACTGGTTATAAGGT+TGG 0.524639 4_4:+64858490 None:intergenic
TAGCTATGGAAATGCAGGGT+TGG 0.526822 4_4:-64860894 Msa0695340:CDS
TTGTCGGGAAAGATTCCATC+CGG 0.528086 4_4:-64859614 Msa0695340:CDS
GACATTAGGAGACTGTGATA+TGG 0.529982 4_4:+64858464 None:intergenic
TCTCAGGTGAATGCAATCCT+TGG 0.530122 4_4:+64857414 None:intergenic
AGTTTCAGTTGCCACGACAA+TGG 0.531590 4_4:-64858194 Msa0695340:CDS
GAAAACATGCTCCACTTCAC+TGG 0.533461 4_4:+64857671 None:intergenic
AGTAAGCATTTCTGTTCGAA+GGG 0.537776 4_4:-64858529 Msa0695340:CDS
GACACAAAGGAAATGGTAAG+AGG 0.538834 4_4:-64857305 Msa0695340:CDS
ATAAACTCGGCAATTTATCA+TGG 0.539597 4_4:-64857374 Msa0695340:CDS
GATTCTCTGCTTGCAAGTCA+AGG 0.541130 4_4:-64860802 Msa0695340:CDS
TAATAGATAAGGGAACATTA+GGG 0.541232 4_4:+64860714 None:intergenic
CCATCTTCAGCATCTTTCAG+AGG 0.545066 4_4:-64857771 Msa0695340:CDS
AATATAATATATGTTTGAAG+AGG 0.552088 4_4:+64861091 None:intergenic
AGCATTTCTGTTCGAAGGGG+AGG 0.555180 4_4:-64858525 Msa0695340:CDS
GGAAGAAGGAATTACCTTCA+CGG 0.561197 4_4:+64858065 None:intergenic
ACAATACAATAGCTCCAGAA+TGG 0.564872 4_4:-64857627 Msa0695340:CDS
TGGTCCACCTGTGCCAAGAA+GGG 0.573430 4_4:-64857351 Msa0695340:CDS
TCTGAAATTTCTAGGACACC+TGG 0.574524 4_4:+64857746 None:intergenic
GTAGTTGTTGGGGTGAAGAT+GGG 0.574754 4_4:-64859038 Msa0695340:CDS
ATGCTATTGAATTGGCCGGA+TGG 0.576725 4_4:+64859599 None:intergenic
GGGTGGAGAAGTTAAAAGGA+CGG 0.577002 4_4:+64861204 None:intergenic
CCAGTGACAACCCAATATCC+TGG 0.577834 4_4:+64857269 None:intergenic
GTGATATGGTTGAGAGCCAC+TGG 0.578254 4_4:+64858478 None:intergenic
TACAATTGGCCTGCCAACAA+GGG 0.578423 4_4:+64858706 None:intergenic
AGGTGGCAGAATCTCAATCA+AGG 0.582915 4_4:-64857228 Msa0695340:CDS
AACGAATACCTGTTACCGGC+CGG 0.583865 4_4:+64857831 None:intergenic
TACTTATGGTCGAATACAAG+AGG 0.584243 4_4:+64858150 None:intergenic
TGTTATGAACCATCCATCAA+AGG 0.584689 4_4:+64859523 None:intergenic
TCATTACTGAATTCTGTCCC+AGG 0.588026 4_4:-64858414 Msa0695340:CDS
GAGGACATCGGATCGAAACC+TGG 0.588872 4_4:+64860670 None:intergenic
TTTCAAAGGGTCATATACGC+GGG 0.593654 4_4:+64861141 None:intergenic
TGAATTTGCCATATTCAGGT+CGG 0.595126 4_4:+64857050 None:intergenic
GGTTGATTCGGGAAACCGGC+CGG 0.595912 4_4:-64857846 Msa0695340:CDS
ATGAGTGCAAAGCTTAGCCA+AGG 0.599460 4_4:-64857431 Msa0695340:CDS
GCTACTACGAACCAGTGAAG+TGG 0.605145 4_4:-64857682 Msa0695340:CDS
GTCTACATCTATTGTGACAA+AGG 0.606707 4_4:-64857600 Msa0695340:CDS
TACATCGGTGCCCATTGTCG+TGG 0.607453 4_4:+64858183 None:intergenic
ATTGGCCTGCCAACAAGGGA+CGG 0.613832 4_4:+64858710 None:intergenic
CTTAAGACTTGGATACTCAA+CGG 0.619317 4_4:-64857534 Msa0695340:CDS
CTAATAGCTATGGAAATGCA+GGG 0.619542 4_4:-64860898 Msa0695340:CDS
CAATGACCTGATTAAAAGTG+AGG 0.619839 4_4:+64860651 None:intergenic
TGAACCATCCATCAAAGGCA+AGG 0.620613 4_4:+64859528 None:intergenic
ATTCGCAGATCAGAATGGGA+TGG 0.626214 4_4:-64857497 Msa0695340:CDS
AATTTCTGCAGTTCAGTCGG+CGG 0.627237 4_4:+64858969 None:intergenic
AGAGGTCCAGAGGATCCACC+AGG 0.627751 4_4:-64857287 Msa0695340:CDS
CAAAGCTTAGGGGACTGCAC+AGG 0.627915 4_4:-64858742 Msa0695340:CDS
TCACTGGTTCGTAGTAGCCT+CGG 0.627996 4_4:+64857687 None:intergenic
ACTTTATGTTAATACCGTGA+AGG 0.630084 4_4:-64858079 Msa0695340:intron
GCAGCAGGGTTCCACGAACA+AGG 0.630710 4_4:+64859437 None:intergenic
GGAAATGGTAAGAGGTCCAG+AGG 0.631442 4_4:-64857297 Msa0695340:CDS
GATCCTATTGACGAACCAGA+TGG 0.633830 4_4:-64857710 Msa0695340:CDS
ATTGACGAACCAGATGGCCG+AGG 0.634066 4_4:-64857704 Msa0695340:CDS
GTTGTTGGGGTGAAGATGGG+AGG 0.635084 4_4:-64859035 Msa0695340:CDS
ATAAGAGTGAACTGAAGTGA+CGG 0.635680 4_4:+64858111 None:intergenic
GAACATGCTATTGAATTGGC+CGG 0.637602 4_4:+64859595 None:intergenic
ATCTAAAGTTGACATAAACT+CGG 0.638507 4_4:-64857387 Msa0695340:CDS
TTAGGGACAACAACACCAGA+AGG 0.641365 4_4:+64860731 None:intergenic
TGGTACACACGTAGTTGTTG+GGG 0.641806 4_4:-64859048 Msa0695340:CDS
AACTCGGCAATTTATCATGG+TGG 0.643726 4_4:-64857371 Msa0695340:CDS
ATCCACAGAAAACCTCTCGT+CGG 0.645918 4_4:+64858932 None:intergenic
ACAATAGTAGTTCAAACACA+AGG 0.647296 4_4:-64860766 Msa0695340:CDS
TTAAGCAATTAGCCGACGAG+AGG 0.648867 4_4:-64858944 Msa0695340:CDS
GCTGTGAGTGTGATTGGTCA+AGG 0.654752 4_4:-64860848 Msa0695340:CDS
GGCCTGCCAACAAGGGACGG+AGG 0.659617 4_4:+64858713 None:intergenic
GTAAGCATTTCTGTTCGAAG+GGG 0.662446 4_4:-64858528 Msa0695340:CDS
TATGCCAACCTTATAACCAG+TGG 0.666189 4_4:-64858494 Msa0695340:CDS
CTGATTAAAAGTGAGGACAT+CGG 0.670013 4_4:+64860658 None:intergenic
AAGTTCTAATGTCAATCCTG+CGG 0.679076 4_4:-64858901 Msa0695340:CDS
GATGATCATACAAAGCTTAG+GGG 0.687701 4_4:-64858752 Msa0695340:CDS
CTTACTCGGCAAGAGCAGCA+GGG 0.689201 4_4:+64859423 None:intergenic
GCTGAAGATGGATTGATAGG+TGG 0.699756 4_4:+64857783 None:intergenic
GTGACAACCCAATATCCTGG+TGG 0.702984 4_4:+64857272 None:intergenic
CAATAGTAGTTCAAACACAA+GGG 0.705935 4_4:-64860765 Msa0695340:CDS
AGAGGCAGATCACCATACAT+CGG 0.713318 4_4:+64858168 None:intergenic
GCAAAGTTATGTGTAGAAGG+TGG 0.744121 4_4:-64857245 Msa0695340:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCTTATGATAATTATTTTT+GGG + chr4_4:64857036-64857055 None:intergenic 10.0%
!!! TATCTTATGATAATTATTTT+TGG + chr4_4:64857037-64857056 None:intergenic 10.0%
!!! TTTTGTATTTAAATTAGTTA+GGG + chr4_4:64858366-64858385 None:intergenic 10.0%
!!! TTTTGTATTTAAATTAGTTA+GGG - chr4_4:64858366-64858385 Msa0695340:intron 10.0%
!!! TCTTATGATAATTATTTTTG+GGG + chr4_4:64857035-64857054 None:intergenic 15.0%
!! AATATAATATATGTTTGAAG+AGG + chr4_4:64857127-64857146 None:intergenic 15.0%
!! ATGAAACTATTGAATATAAT+TGG + chr4_4:64857671-64857690 None:intergenic 15.0%
!! TTTGTATTTAAATTAGTTAG+GGG + chr4_4:64858367-64858386 None:intergenic 15.0%
!!! GTTTTGTATTTAAATTAGTT+AGG + chr4_4:64858365-64858384 None:intergenic 15.0%
!! AAATAAAAAAAAATGACACA+TGG - chr4_4:64858274-64858293 Msa0695340:intron 15.0%
!!! GTTTTGTATTTAAATTAGTT+AGG - chr4_4:64858365-64858384 Msa0695340:intron 15.0%
!! TTTGTATTTAAATTAGTTAG+GGG - chr4_4:64858367-64858386 Msa0695340:intron 15.0%
!!! ATATGAAAATGGAAATTTTA+GGG - chr4_4:64858490-64858509 Msa0695340:CDS 15.0%
!!! TATTATAAGAATTTCTTTTC+AGG - chr4_4:64859659-64859678 Msa0695340:intron 15.0%
!! AGAAGAAAAAAATAAGTATT+GGG + chr4_4:64859902-64859921 None:intergenic 15.0%
!!! TAATAACTATTTAAGAGTAT+TGG + chr4_4:64860181-64860200 None:intergenic 15.0%
!! TCTATATACTATTCTTTATT+AGG + chr4_4:64861220-64861239 None:intergenic 15.0%
!!! CTTATGATAATTATTTTTGG+GGG + chr4_4:64857034-64857053 None:intergenic 20.0%
!! GTTAATAATACTAATAGCTA+TGG - chr4_4:64857307-64857326 Msa0695340:CDS 20.0%
!! TTATCAGACTTAATAGATAA+GGG + chr4_4:64857514-64857533 None:intergenic 20.0%
!! TTTATCAGACTTAATAGATA+AGG + chr4_4:64857515-64857534 None:intergenic 20.0%
!! TTATCTATTAAGTCTGATAA+AGG - chr4_4:64857514-64857533 Msa0695340:CDS 20.0%
!!! ATTATATGATTTTCTAGTTG+TGG - chr4_4:64857846-64857865 Msa0695340:CDS 20.0%
!! TTGCAACAAAAAATTTAAAG+TGG + chr4_4:64858000-64858019 None:intergenic 20.0%
!! TAAAAAAAAGGTAAATCAAC+AGG + chr4_4:64858125-64858144 None:intergenic 20.0%
!!! GTTGATTTACCTTTTTTTTA+AGG - chr4_4:64858125-64858144 Msa0695340:CDS 20.0%
!! TTGTATTTAAATTAGTTAGG+GGG + chr4_4:64858368-64858387 None:intergenic 20.0%
!!! TTTTATTTTTTTTTGGCCTT+GGG + chr4_4:64858262-64858281 None:intergenic 20.0%
!!! TTTTTATTTTTTTTTGGCCT+TGG + chr4_4:64858263-64858282 None:intergenic 20.0%
!! TTGTATTTAAATTAGTTAGG+GGG - chr4_4:64858368-64858387 Msa0695340:intron 20.0%
!! CATAAATGGGAATTAAAAAA+TGG + chr4_4:64858442-64858461 None:intergenic 20.0%
!!! CATTTTTTAATTCCCATTTA+TGG - chr4_4:64858440-64858459 Msa0695340:CDS 20.0%
!! AAAAAACATGTACCATAAAT+GGG + chr4_4:64858455-64858474 None:intergenic 20.0%
!! AAAAAAACATGTACCATAAA+TGG + chr4_4:64858456-64858475 None:intergenic 20.0%
!!! TTTATGGTACATGTTTTTTT+TGG - chr4_4:64858456-64858475 Msa0695340:CDS 20.0%
!! ACATAAAAGTGATATGAAAA+TGG - chr4_4:64858479-64858498 Msa0695340:CDS 20.0%
!!! GATATGAAAATGGAAATTTT+AGG - chr4_4:64858489-64858508 Msa0695340:CDS 20.0%
!!! TATGAAAATGGAAATTTTAG+GGG - chr4_4:64858491-64858510 Msa0695340:CDS 20.0%
!! AATCTGAATTTCAGTTAAAT+TGG - chr4_4:64858538-64858557 Msa0695340:intron 20.0%
!! TAAAACTATAAGCATTCATT+TGG - chr4_4:64858939-64858958 Msa0695340:CDS 20.0%
!! AAGAAATAAAGATCTAAGTA+AGG + chr4_4:64859054-64859073 None:intergenic 20.0%
!!! AGTTTAAAACACTATTAACT+CGG + chr4_4:64859112-64859131 None:intergenic 20.0%
!! AGAACATGAAGATAAAAATA+TGG - chr4_4:64859383-64859402 Msa0695340:intron 20.0%
!! TGAAGATAAAAATATGGAAA+TGG - chr4_4:64859389-64859408 Msa0695340:intron 20.0%
!! CAGAAGAAAAAAATAAGTAT+TGG + chr4_4:64859903-64859922 None:intergenic 20.0%
!!! CAATACTTATTTTTTTCTTC+TGG - chr4_4:64859901-64859920 Msa0695340:intron 20.0%
!! TTCTTTGTTGAAATATATGT+TGG - chr4_4:64859931-64859950 Msa0695340:intron 20.0%
! TTGAACTACTATTGTCAATA+TGG + chr4_4:64857444-64857463 None:intergenic 25.0%
! TAATAGATAAGGGAACATTA+GGG + chr4_4:64857504-64857523 None:intergenic 25.0%
! TTAATAGATAAGGGAACATT+AGG + chr4_4:64857505-64857524 None:intergenic 25.0%
! CTATTGAATATAATTGGTCA+TGG + chr4_4:64857665-64857684 None:intergenic 25.0%
! TTCAATCAACTAGTTGAAAA+AGG + chr4_4:64857717-64857736 None:intergenic 25.0%
!! ATAGAAAAGTTATTGACTAG+TGG - chr4_4:64857760-64857779 Msa0695340:CDS 25.0%
! ACTATTGATAAAACACAGTT+AGG + chr4_4:64857826-64857845 None:intergenic 25.0%
! TAGTGATCAGAATTCAATTA+TGG + chr4_4:64857973-64857992 None:intergenic 25.0%
! CAAAAGTCAAATGGTTAAAA+AGG + chr4_4:64858084-64858103 None:intergenic 25.0%
! AATAGTCTTCAAAAGTCAAA+TGG + chr4_4:64858093-64858112 None:intergenic 25.0%
! GCAATTAAGCCTTAAAAAAA+AGG + chr4_4:64858137-64858156 None:intergenic 25.0%
!!! TTTATTTTTTTTTGGCCTTG+GGG + chr4_4:64858261-64858280 None:intergenic 25.0%
! TGCCAAAGATTCAATAATTA+GGG - chr4_4:64858338-64858357 Msa0695340:intron 25.0%
!! AAATGGCTTAATTGTACTTT+TGG + chr4_4:64858425-64858444 None:intergenic 25.0%
! GCATAACAATAATACTTACT+CGG + chr4_4:64858809-64858828 None:intergenic 25.0%
! AAATTCTCCTATATGTTGAT+TGG - chr4_4:64859085-64859104 Msa0695340:intron 25.0%
! CTAAATAAACATGATTCTTC+AGG - chr4_4:64859130-64859149 Msa0695340:intron 25.0%
! ATATCTTTGATCATGTTTGT+AGG - chr4_4:64859441-64859460 Msa0695340:CDS 25.0%
! AAAAATGCTAACATCATTCT+TGG + chr4_4:64859545-64859564 None:intergenic 25.0%
! AAAGACATTGATATGACATT+AGG + chr4_4:64859768-64859787 None:intergenic 25.0%
! TAATGTCATATCAATGTCTT+TGG - chr4_4:64859767-64859786 Msa0695340:intron 25.0%
! GAATTCAGTAATGAAGTAAT+AGG + chr4_4:64859795-64859814 None:intergenic 25.0%
!!! AAATGGATTTTTAAGTCATG+CGG - chr4_4:64859824-64859843 Msa0695340:intron 25.0%
!!! AAAAAATAAGTATTGGGCAA+AGG + chr4_4:64859896-64859915 None:intergenic 25.0%
! TATTCGACCATAAGTATAAA+AGG - chr4_4:64860072-64860091 Msa0695340:intron 25.0%
! ACGGTATTAACATAAAGTTT+GGG + chr4_4:64860134-64860153 None:intergenic 25.0%
!!! TATTTAAGAGTATTGGAACT+TGG + chr4_4:64860174-64860193 None:intergenic 25.0%
!!! AAAGTACTTTTCTTAAGACT+TGG - chr4_4:64860670-64860689 Msa0695340:CDS 25.0%
!! ATCTAAAGTTGACATAAACT+CGG - chr4_4:64860828-64860847 Msa0695340:CDS 25.0%
!! TCGACAAAATTAAGCATTTT+GGG + chr4_4:64860892-64860911 None:intergenic 25.0%
!! GTATATTTTGTGATGTCATT+CGG - chr4_4:64861136-64861155 Msa0695340:five_prime_UTR 25.0%
!!! ATGATAATTATTTTTGGGGG+TGG + chr4_4:64857031-64857050 None:intergenic 30.0%
CTTTCTTATCATTCTATGTG+TGG - chr4_4:64857215-64857234 Msa0695340:CDS 30.0%
! TATGTAAGTTGAACTCTTCA+CGG + chr4_4:64857247-64857266 None:intergenic 30.0%
!! ATAGCTGCAATATTTTTGTG+TGG - chr4_4:64857264-64857283 Msa0695340:CDS 30.0%
ACAATAGTAGTTCAAACACA+AGG - chr4_4:64857449-64857468 Msa0695340:CDS 30.0%
CAATAGTAGTTCAAACACAA+GGG - chr4_4:64857450-64857469 Msa0695340:CDS 30.0%
AAGAAATTGAAGCAGAAGTA+AGG + chr4_4:64857599-64857618 None:intergenic 30.0%
TTACATATTTGTGCTGAACA+TGG + chr4_4:64857741-64857760 None:intergenic 30.0%
! AGTTGATATATTGAGCAAGT+TGG - chr4_4:64857793-64857812 Msa0695340:CDS 30.0%
TATGGTAATACTACGTACTA+CGG + chr4_4:64857955-64857974 None:intergenic 30.0%
GAATGATGTTTGTTTGCATT+TGG - chr4_4:64858039-64858058 Msa0695340:intron 30.0%
! TTAAGGCTTAATTGCACTTT+TGG - chr4_4:64858142-64858161 Msa0695340:CDS 30.0%
TGCCAAAGATTCAATACTTA+GGG + chr4_4:64858229-64858248 None:intergenic 30.0%
! TATTGAATCTTTGGCAGTTT+TGG - chr4_4:64858233-64858252 Msa0695340:CDS 30.0%
!!! TTATTTTTTTTTGGCCTTGG+GGG + chr4_4:64858260-64858279 None:intergenic 30.0%
! TATTGAATCTTTGGCAGTTT+TGG + chr4_4:64858233-64858252 None:intergenic 30.0%
CTGCCAAAGATTCAATAATT+AGG - chr4_4:64858337-64858356 Msa0695340:intron 30.0%
GCCAAAGATTCAATAATTAG+GGG - chr4_4:64858339-64858358 Msa0695340:intron 30.0%
TCCCCTAATTATTGAATCTT+TGG + chr4_4:64858343-64858362 None:intergenic 30.0%
TGTTCGACATGAAAAAATGT+TGG - chr4_4:64858638-64858657 Msa0695340:intron 30.0%
TGATGACTATTAACTAGAAG+AGG + chr4_4:64858837-64858856 None:intergenic 30.0%
!! GTTTTAGCAATTATAGAGCA+AGG + chr4_4:64858925-64858944 None:intergenic 30.0%
! GTTGAATGTTACTGCTATTT+AGG + chr4_4:64858996-64859015 None:intergenic 30.0%
! TTCAGGTTCATTGAAAAGTA+TGG - chr4_4:64859147-64859166 Msa0695340:intron 30.0%
GGCTATATCAGGAAAATTAA+AGG - chr4_4:64859335-64859354 Msa0695340:intron 30.0%
! TTGGAGTGACTTTTTACAAT+TGG + chr4_4:64859526-64859545 None:intergenic 30.0%
GACTTAAAAATCCATTTCCT+GGG + chr4_4:64859821-64859840 None:intergenic 30.0%
TGACTTAAAAATCCATTTCC+TGG + chr4_4:64859822-64859841 None:intergenic 30.0%
TTTGTATCTTAGATGTGAGT+AGG - chr4_4:64859851-64859870 Msa0695340:intron 30.0%
! ACGCATTCCTTTTATACTTA+TGG + chr4_4:64860082-64860101 None:intergenic 30.0%
CACGGTATTAACATAAAGTT+TGG + chr4_4:64860135-64860154 None:intergenic 30.0%
ACTTTATGTTAATACCGTGA+AGG - chr4_4:64860136-64860155 Msa0695340:intron 30.0%
ACTTGTATAGCAAGAATGTA+AGG - chr4_4:64860216-64860235 Msa0695340:intron 30.0%
AAGAACACACGATTATTTGT+AGG - chr4_4:64860298-64860317 Msa0695340:intron 30.0%
!! TTTCAATAAGCAGGTTGATT+CGG - chr4_4:64860357-64860376 Msa0695340:intron 30.0%
TATAAACGAATACCTGTTAC+CGG + chr4_4:64860391-64860410 None:intergenic 30.0%
AACAGGTATTCGTTTATACT+TGG - chr4_4:64860393-64860412 Msa0695340:intron 30.0%
!! TGTGATCTTCTGAAATTTCT+AGG + chr4_4:64860480-64860499 None:intergenic 30.0%
! AAATCCTGATTTTCTAGATG+AGG + chr4_4:64860752-64860771 None:intergenic 30.0%
! TCAACTTTAGATTGTTTCTC+AGG + chr4_4:64860820-64860839 None:intergenic 30.0%
ATAAACTCGGCAATTTATCA+TGG - chr4_4:64860841-64860860 Msa0695340:CDS 30.0%
! GTCGACAAAATTAAGCATTT+TGG + chr4_4:64860893-64860912 None:intergenic 30.0%
ACAATGAATTTGCCATATTC+AGG + chr4_4:64861172-64861191 None:intergenic 30.0%
!!! CATTGTGCTGATTTTGTTTT+TGG - chr4_4:64861186-64861205 Msa0695340:five_prime_UTR 30.0%
! TTTTCAAAGGGTCATATACG+CGG + chr4_4:64857078-64857097 None:intergenic 35.0%
! TGATGGAGAGTCTTTTCAAA+GGG + chr4_4:64857090-64857109 None:intergenic 35.0%
!! ATGATGGAGAGTCTTTTCAA+AGG + chr4_4:64857091-64857110 None:intergenic 35.0%
AGGTCATAACACTTCTATGA+TGG + chr4_4:64857107-64857126 None:intergenic 35.0%
! ATGTAAGTTGAACTCTTCAC+GGG + chr4_4:64857246-64857265 None:intergenic 35.0%
! TTTTTGTGTGGCTTGAGTAA+TGG - chr4_4:64857276-64857295 Msa0695340:CDS 35.0%
! TTTTGTGTGGCTTGAGTAAT+GGG - chr4_4:64857277-64857296 Msa0695340:CDS 35.0%
ACTAATAGCTATGGAAATGC+AGG - chr4_4:64857316-64857335 Msa0695340:CDS 35.0%
CTAATAGCTATGGAAATGCA+GGG - chr4_4:64857317-64857336 Msa0695340:CDS 35.0%
CTGATTAAAAGTGAGGACAT+CGG + chr4_4:64857560-64857579 None:intergenic 35.0%
CAATGACCTGATTAAAAGTG+AGG + chr4_4:64857567-64857586 None:intergenic 35.0%
GATTCATTAGATACGAATCG+TGG - chr4_4:64857900-64857919 Msa0695340:intron 35.0%
CCAAAGATTCAATACTTAGG+GGG + chr4_4:64858227-64858246 None:intergenic 35.0%
GCCAAAGATTCAATACTTAG+GGG + chr4_4:64858228-64858247 None:intergenic 35.0%
CTGCCAAAGATTCAATACTT+AGG + chr4_4:64858230-64858249 None:intergenic 35.0%
!!! TATTTTTTTTTGGCCTTGGG+GGG + chr4_4:64858259-64858278 None:intergenic 35.0%
!! AATGGAAATTTTAGGGGTGA+TGG - chr4_4:64858497-64858516 Msa0695340:CDS 35.0%
!! ATGGAAATTTTAGGGGTGAT+GGG - chr4_4:64858498-64858517 Msa0695340:CDS 35.0%
CAACAGACAACTATCTTTGT+CGG - chr4_4:64858585-64858604 Msa0695340:intron 35.0%
AACAGACAACTATCTTTGTC+GGG - chr4_4:64858586-64858605 Msa0695340:intron 35.0%
TGTCGAACATGCTATTGAAT+TGG + chr4_4:64858627-64858646 None:intergenic 35.0%
ACATGAAAAAATGTTGGTCC+AGG - chr4_4:64858644-64858663 Msa0695340:intron 35.0%
CATGAAAAAATGTTGGTCCA+GGG - chr4_4:64858645-64858664 Msa0695340:intron 35.0%
TGTTATGAACCATCCATCAA+AGG + chr4_4:64858695-64858714 None:intergenic 35.0%
! AAGTTCTAATGTCAATCCTG+CGG - chr4_4:64859314-64859333 Msa0695340:intron 35.0%
AGGATGATCATACAAAGCTT+AGG - chr4_4:64859461-64859480 Msa0695340:CDS 35.0%
GGATGATCATACAAAGCTTA+GGG - chr4_4:64859462-64859481 Msa0695340:CDS 35.0%
GATGATCATACAAAGCTTAG+GGG - chr4_4:64859463-64859482 Msa0695340:CDS 35.0%
TAGTAAGCATTTCTGTTCGA+AGG - chr4_4:64859685-64859704 Msa0695340:intron 35.0%
AGTAAGCATTTCTGTTCGAA+GGG - chr4_4:64859686-64859705 Msa0695340:intron 35.0%
TGATGAAGTTCTTCTATTGC+AGG + chr4_4:64859993-64860012 None:intergenic 35.0%
TACTTATGGTCGAATACAAG+AGG + chr4_4:64860068-64860087 None:intergenic 35.0%
ATAAGAGTGAACTGAAGTGA+CGG + chr4_4:64860107-64860126 None:intergenic 35.0%
TCACTTCAGTTCACTCTTAT+GGG - chr4_4:64860107-64860126 Msa0695340:intron 35.0%
TTGTAGGAATTAGTTAGCAC+TGG - chr4_4:64860314-64860333 Msa0695340:intron 35.0%
TCAACCTGCTTATTGAAACA+GGG + chr4_4:64860355-64860374 None:intergenic 35.0%
ATCAACCTGCTTATTGAAAC+AGG + chr4_4:64860356-64860375 None:intergenic 35.0%
!! TTCAATAAGCAGGTTGATTC+GGG - chr4_4:64860358-64860377 Msa0695340:intron 35.0%
GGTATTCGTTTATACTTGGA+AGG - chr4_4:64860397-64860416 Msa0695340:intron 35.0%
ACAATACAATAGCTCCAGAA+TGG - chr4_4:64860588-64860607 Msa0695340:intron 35.0%
GTCTACATCTATTGTGACAA+AGG - chr4_4:64860615-64860634 Msa0695340:intron 35.0%
! TTGGTTTGAGGTTAAGCTAA+TGG - chr4_4:64860639-64860658 Msa0695340:intron 35.0%
! TGGTTTGAGGTTAAGCTAAT+GGG - chr4_4:64860640-64860659 Msa0695340:intron 35.0%
CTTAAGACTTGGATACTCAA+CGG - chr4_4:64860681-64860700 Msa0695340:CDS 35.0%
GAAAATTCGCAGATCAGAAT+GGG - chr4_4:64860714-64860733 Msa0695340:CDS 35.0%
! GATTTTCTAGATGAGGTTGA+AGG + chr4_4:64860745-64860764 None:intergenic 35.0%
TCAACCTCATCTAGAAAATC+AGG - chr4_4:64860745-64860764 Msa0695340:CDS 35.0%
! GCTTAATTTTGTCGACACAA+AGG - chr4_4:64860897-64860916 Msa0695340:CDS 35.0%
! TTTTGTCGACACAAAGGAAA+TGG - chr4_4:64860903-64860922 Msa0695340:CDS 35.0%
TGAATTTGCCATATTCAGGT+CGG + chr4_4:64861168-64861187 None:intergenic 35.0%
TTTCAAAGGGTCATATACGC+GGG + chr4_4:64857077-64857096 None:intergenic 40.0%
CAACACCAGAAGGAAAAACA+AGG + chr4_4:64857477-64857496 None:intergenic 40.0%
CTGATAAAGGTGATTGTACC+AGG - chr4_4:64857527-64857546 Msa0695340:CDS 40.0%
!! CGATGTCCTCACTTTTAATC+AGG - chr4_4:64857558-64857577 Msa0695340:CDS 40.0%
! AGTTATTGACTAGTGGCAGA+TGG - chr4_4:64857767-64857786 Msa0695340:CDS 40.0%
!!! GCAAGTTTTGGAAAGATAGG+GGG + chr4_4:64858168-64858187 None:intergenic 40.0%
!!! CGCAAGTTTTGGAAAGATAG+GGG + chr4_4:64858169-64858188 None:intergenic 40.0%
!!! CCGCAAGTTTTGGAAAGATA+GGG + chr4_4:64858170-64858189 None:intergenic 40.0%
CCCTATCTTTCCAAAACTTG+CGG - chr4_4:64858167-64858186 Msa0695340:CDS 40.0%
!!! ACCGCAAGTTTTGGAAAGAT+AGG + chr4_4:64858171-64858190 None:intergenic 40.0%
!! CCCCCTAAGTATTGAATCTT+TGG - chr4_4:64858224-64858243 Msa0695340:CDS 40.0%
!! ACCGCAAGTATTGGAAAGAT+AGG - chr4_4:64858396-64858415 Msa0695340:CDS 40.0%
CCCTATCTTTCCAATACTTG+CGG + chr4_4:64858400-64858419 None:intergenic 40.0%
!! CCGCAAGTATTGGAAAGATA+GGG - chr4_4:64858397-64858416 Msa0695340:CDS 40.0%
!! CGCAAGTATTGGAAAGATAG+GGG - chr4_4:64858398-64858417 Msa0695340:CDS 40.0%
!! GCAAGTATTGGAAAGATAGG+GGG - chr4_4:64858399-64858418 Msa0695340:CDS 40.0%
GAACATGCTATTGAATTGGC+CGG + chr4_4:64858623-64858642 None:intergenic 40.0%
AAAAAGACGTACCTTGTTCG+TGG - chr4_4:64858767-64858786 Msa0695340:intron 40.0%
ACTCGGTCCAATCAACATAT+AGG + chr4_4:64859095-64859114 None:intergenic 40.0%
TATGGTACACACGTAGTTGT+TGG - chr4_4:64859165-64859184 Msa0695340:intron 40.0%
ATGGTACACACGTAGTTGTT+GGG - chr4_4:64859166-64859185 Msa0695340:intron 40.0%
AGCAATTTCTGCAGTTCAGT+CGG + chr4_4:64859252-64859271 None:intergenic 40.0%
! AATTTTCCTGATATAGCCGC+AGG + chr4_4:64859333-64859352 None:intergenic 40.0%
AGAATAGATGCAAAGTGCAC+AGG + chr4_4:64859609-64859628 None:intergenic 40.0%
AAGTTCGACTGTTCGAGTAT+AGG + chr4_4:64859640-64859659 None:intergenic 40.0%
GTAAGCATTTCTGTTCGAAG+GGG - chr4_4:64859687-64859706 Msa0695340:intron 40.0%
TATGCCAACCTTATAACCAG+TGG - chr4_4:64859721-64859740 Msa0695340:intron 40.0%
GACATTAGGAGACTGTGATA+TGG + chr4_4:64859754-64859773 None:intergenic 40.0%
TCATTACTGAATTCTGTCCC+AGG - chr4_4:64859801-64859820 Msa0695340:intron 40.0%
GTCACTTCAGTTCACTCTTA+TGG - chr4_4:64860106-64860125 Msa0695340:intron 40.0%
GGAAGAAGGAATTACCTTCA+CGG + chr4_4:64860153-64860172 None:intergenic 40.0%
!! GAGTATTGGAACTTGGAAGA+AGG + chr4_4:64860167-64860186 None:intergenic 40.0%
!! GATGCTGAAGATGGATTGAT+AGG + chr4_4:64860438-64860457 None:intergenic 40.0%
!! TCTGAAATTTCTAGGACACC+TGG + chr4_4:64860472-64860491 None:intergenic 40.0%
CTGGAGCTATTGTATTGTAC+AGG + chr4_4:64860586-64860605 None:intergenic 40.0%
AGATGTAGACTCATCCATTC+TGG + chr4_4:64860605-64860624 None:intergenic 40.0%
CATCTATTGTGACAAAGGCT+TGG - chr4_4:64860620-64860639 Msa0695340:intron 40.0%
CGAAAATTCGCAGATCAGAA+TGG - chr4_4:64860713-64860732 Msa0695340:CDS 40.0%
AACTCGGCAATTTATCATGG+TGG - chr4_4:64860844-64860863 Msa0695340:CDS 40.0%
GACACAAAGGAAATGGTAAG+AGG - chr4_4:64860910-64860929 Msa0695340:CDS 40.0%
GGTGCAAAGTTATGTGTAGA+AGG - chr4_4:64860967-64860986 Msa0695340:five_prime_UTR 40.0%
GCAAAGTTATGTGTAGAAGG+TGG - chr4_4:64860970-64860989 Msa0695340:five_prime_UTR 40.0%
GGGTGGAGAAGTTAAAAGGA+CGG + chr4_4:64857014-64857033 None:intergenic 45.0%
TTGGGGGTGGAGAAGTTAAA+AGG + chr4_4:64857018-64857037 None:intergenic 45.0%
TAGCTATGGAAATGCAGGGT+TGG - chr4_4:64857321-64857340 Msa0695340:CDS 45.0%
GCTTTCTCAGCTGCTAATTG+AGG + chr4_4:64857349-64857368 None:intergenic 45.0%
GAGAAAGCTGTGAGTGTGAT+TGG - chr4_4:64857361-64857380 Msa0695340:CDS 45.0%
GATTCTCTGCTTGCAAGTCA+AGG - chr4_4:64857413-64857432 Msa0695340:CDS 45.0%
!!! AGGGACCTTGTTTTTCCTTC+TGG - chr4_4:64857469-64857488 Msa0695340:CDS 45.0%
TTAGGGACAACAACACCAGA+AGG + chr4_4:64857487-64857506 None:intergenic 45.0%
CTACGTACTACGGTACTAGA+TGG + chr4_4:64857945-64857964 None:intergenic 45.0%
TTGCAATTCTTGCCTTGCAC+AGG - chr4_4:64858014-64858033 Msa0695340:intron 45.0%
TGCAATTCTTGCCTTGCACA+GGG - chr4_4:64858015-64858034 Msa0695340:intron 45.0%
AACATCATTCACCCTGTGCA+AGG + chr4_4:64858029-64858048 None:intergenic 45.0%
TGACACATGGCACCTCATTT+AGG - chr4_4:64858287-64858306 Msa0695340:intron 45.0%
GACACATGGCACCTCATTTA+GGG - chr4_4:64858288-64858307 Msa0695340:intron 45.0%
!!! ATTTTAGGGGTGATGGGATG+TGG - chr4_4:64858504-64858523 Msa0695340:CDS 45.0%
TTGTCGGGAAAGATTCCATC+CGG - chr4_4:64858601-64858620 Msa0695340:intron 45.0%
ATGCTATTGAATTGGCCGGA+TGG + chr4_4:64858619-64858638 None:intergenic 45.0%
ATCAAAGGCAAGGCTCTTAG+TGG + chr4_4:64858680-64858699 None:intergenic 45.0%
ACTAAGAGCCTTGCCTTTGA+TGG - chr4_4:64858679-64858698 Msa0695340:intron 45.0%
TGAACCATCCATCAAAGGCA+AGG + chr4_4:64858690-64858709 None:intergenic 45.0%
TGGTACACACGTAGTTGTTG+GGG - chr4_4:64859167-64859186 Msa0695340:intron 45.0%
GTAGTTGTTGGGGTGAAGAT+GGG - chr4_4:64859177-64859196 Msa0695340:intron 45.0%
AATTTCTGCAGTTCAGTCGG+CGG + chr4_4:64859249-64859268 None:intergenic 45.0%
TTAAGCAATTAGCCGACGAG+AGG - chr4_4:64859271-64859290 Msa0695340:intron 45.0%
ATCCACAGAAAACCTCTCGT+CGG + chr4_4:64859286-64859305 None:intergenic 45.0%
! TACAATTGGCCTGCCAACAA+GGG + chr4_4:64859512-64859531 None:intergenic 45.0%
! TTACAATTGGCCTGCCAACA+AGG + chr4_4:64859513-64859532 None:intergenic 45.0%
! AGAGCCACTGGTTATAAGGT+TGG + chr4_4:64859728-64859747 None:intergenic 45.0%
! GTTGAGAGCCACTGGTTATA+AGG + chr4_4:64859732-64859751 None:intergenic 45.0%
CTGAATTCTGTCCCAGGAAA+TGG - chr4_4:64859807-64859826 Msa0695340:intron 45.0%
CAAAGGAAAACCAAAGTCGC+AGG + chr4_4:64859879-64859898 None:intergenic 45.0%
AGTTTCAGTTGCCACGACAA+TGG - chr4_4:64860021-64860040 Msa0695340:intron 45.0%
GTTTCAGTTGCCACGACAAT+GGG - chr4_4:64860022-64860041 Msa0695340:intron 45.0%
AGAGGCAGATCACCATACAT+CGG + chr4_4:64860050-64860069 None:intergenic 45.0%
TCGACCCTGTTTCAATAAGC+AGG - chr4_4:64860348-64860367 Msa0695340:intron 45.0%
!! GCTGAAGATGGATTGATAGG+TGG + chr4_4:64860435-64860454 None:intergenic 45.0%
! CCTCTGAAAGATGCTGAAGA+TGG + chr4_4:64860447-64860466 None:intergenic 45.0%
CCATCTTCAGCATCTTTCAG+AGG - chr4_4:64860444-64860463 Msa0695340:intron 45.0%
GATCCTATTGACGAACCAGA+TGG - chr4_4:64860505-64860524 Msa0695340:intron 45.0%
GAAAACATGCTCCACTTCAC+TGG + chr4_4:64860547-64860566 None:intergenic 45.0%
! TGTGACAAAGGCTTGGTTTG+AGG - chr4_4:64860627-64860646 Msa0695340:intron 45.0%
ATTCGCAGATCAGAATGGGA+TGG - chr4_4:64860718-64860737 Msa0695340:CDS 45.0%
ATGAGTGCAAAGCTTAGCCA+AGG - chr4_4:64860784-64860803 Msa0695340:CDS 45.0%
TCTCAGGTGAATGCAATCCT+TGG + chr4_4:64860804-64860823 None:intergenic 45.0%
AGAGGATCCACCAGGATATT+GGG - chr4_4:64860936-64860955 Msa0695340:exon 45.0%
AGGTGGCAGAATCTCAATCA+AGG - chr4_4:64860987-64861006 Msa0695340:five_prime_UTR 45.0%
!!! CATTTTTTTTTATTTTTTTT+TGG + chr4_4:64858269-64858288 None:intergenic 5.0%
! GCTGTGAGTGTGATTGGTCA+AGG - chr4_4:64857367-64857386 Msa0695340:CDS 50.0%
CTGATGTGGCACCCTAAATG+AGG + chr4_4:64858302-64858321 None:intergenic 50.0%
AGAGCCTTGCCTTTGATGGA+TGG - chr4_4:64858683-64858702 Msa0695340:intron 50.0%
CGTAGTTGTTGGGGTGAAGA+TGG - chr4_4:64859176-64859195 Msa0695340:intron 50.0%
GTCAATCCTGCGGCTATATC+AGG - chr4_4:64859324-64859343 Msa0695340:intron 50.0%
AACAAACCTCCGTCCCTTGT+TGG - chr4_4:64859496-64859515 Msa0695340:CDS 50.0%
AGCATTTCTGTTCGAAGGGG+AGG - chr4_4:64859690-64859709 Msa0695340:intron 50.0%
GTGATATGGTTGAGAGCCAC+TGG + chr4_4:64859740-64859759 None:intergenic 50.0%
!! AGCAGGTTGATTCGGGAAAC+CGG - chr4_4:64860365-64860384 Msa0695340:intron 50.0%
AACGAATACCTGTTACCGGC+CGG + chr4_4:64860387-64860406 None:intergenic 50.0%
CAGCATCTTTCAGAGGTTCC+AGG - chr4_4:64860451-64860470 Msa0695340:intron 50.0%
!! TCACTGGTTCGTAGTAGCCT+CGG + chr4_4:64860531-64860550 None:intergenic 50.0%
GCTACTACGAACCAGTGAAG+TGG - chr4_4:64860533-64860552 Msa0695340:intron 50.0%
!! AGCATTTTGGGAGCCCTTCT+TGG + chr4_4:64860880-64860899 None:intergenic 50.0%
GGAAATGGTAAGAGGTCCAG+AGG - chr4_4:64860918-64860937 Msa0695340:CDS 50.0%
! CAATATCCTGGTGGATCCTC+TGG + chr4_4:64860937-64860956 None:intergenic 50.0%
CAGAGGATCCACCAGGATAT+TGG - chr4_4:64860935-64860954 Msa0695340:exon 50.0%
GTGACAACCCAATATCCTGG+TGG + chr4_4:64860946-64860965 None:intergenic 50.0%
CCAGTGACAACCCAATATCC+TGG + chr4_4:64860949-64860968 None:intergenic 50.0%
! CCAGGATATTGGGTTGTCAC+TGG - chr4_4:64860946-64860965 Msa0695340:five_prime_UTR 50.0%
GGCGTAAACCGACCTGAATA+TGG - chr4_4:64861157-64861176 Msa0695340:five_prime_UTR 50.0%
GAGGACATCGGATCGAAACC+TGG + chr4_4:64857548-64857567 None:intergenic 55.0%
! GGGGCTGTAACCGCAAGTTT+TGG + chr4_4:64858180-64858199 None:intergenic 55.0%
! TTAGGGTGCCACATCAGCGT+TGG - chr4_4:64858305-64858324 Msa0695340:intron 55.0%
! TAGGGTGCCACATCAGCGTT+GGG - chr4_4:64858306-64858325 Msa0695340:intron 55.0%
GGGGCTGTAACCGCAAGTAT+TGG - chr4_4:64858387-64858406 Msa0695340:CDS 55.0%
CTTAGTGGAAGCTGCATCCC+TGG + chr4_4:64858665-64858684 None:intergenic 55.0%
CTTACTCGGCAAGAGCAGCA+GGG + chr4_4:64858795-64858814 None:intergenic 55.0%
ACTTACTCGGCAAGAGCAGC+AGG + chr4_4:64858796-64858815 None:intergenic 55.0%
GTTGTTGGGGTGAAGATGGG+AGG - chr4_4:64859180-64859199 Msa0695340:intron 55.0%
! AGCCGACGAGAGGTTTTCTG+TGG - chr4_4:64859281-64859300 Msa0695340:intron 55.0%
CAAAGCTTAGGGGACTGCAC+AGG - chr4_4:64859473-64859492 Msa0695340:CDS 55.0%
! ATTGGCCTGCCAACAAGGGA+CGG + chr4_4:64859508-64859527 None:intergenic 55.0%
TGAGTAGGCACCTGCGACTT+TGG - chr4_4:64859866-64859885 Msa0695340:intron 55.0%
! TACATCGGTGCCCATTGTCG+TGG + chr4_4:64860035-64860054 None:intergenic 55.0%
!! CGACAATGGGCACCGATGTA+TGG - chr4_4:64860035-64860054 Msa0695340:intron 55.0%
! CGGCCATCTGGTTCGTCAAT+AGG + chr4_4:64860511-64860530 None:intergenic 55.0%
ATTGACGAACCAGATGGCCG+AGG - chr4_4:64860511-64860530 Msa0695340:intron 55.0%
TGGTCCACCTGTGCCAAGAA+GGG - chr4_4:64860864-64860883 Msa0695340:CDS 55.0%
!! TTGGCAGTTTTGGCCCCCCA+AGG - chr4_4:64858243-64858262 Msa0695340:intron 60.0%
! AGGGTGCCACATCAGCGTTG+GGG - chr4_4:64858307-64858326 Msa0695340:intron 60.0%
TTTGGCCCCCAACGCTGATG+TGG + chr4_4:64858316-64858335 None:intergenic 60.0%
GCAGCAGGGTTCCACGAACA+AGG + chr4_4:64858781-64858800 None:intergenic 60.0%
AACCTCCGTCCCTTGTTGGC+AGG - chr4_4:64859500-64859519 Msa0695340:CDS 60.0%
!! GGTTGATTCGGGAAACCGGC+CGG - chr4_4:64860369-64860388 Msa0695340:intron 60.0%
TCGTAGTAGCCTCGGCCATC+TGG + chr4_4:64860523-64860542 None:intergenic 60.0%
GTGGTCCACCTGTGCCAAGA+AGG - chr4_4:64860863-64860882 Msa0695340:CDS 60.0%
TTGGGAGCCCTTCTTGGCAC+AGG + chr4_4:64860874-64860893 None:intergenic 60.0%
AGAGGTCCAGAGGATCCACC+AGG - chr4_4:64860928-64860947 Msa0695340:exon 60.0%
! GGGTGCCACATCAGCGTTGG+GGG - chr4_4:64858308-64858327 Msa0695340:intron 65.0%
TCGGGAAACCGGCCGGTAAC+AGG - chr4_4:64860376-64860395 Msa0695340:intron 65.0%
GGAGCCCTTCTTGGCACAGG+TGG + chr4_4:64860871-64860890 None:intergenic 65.0%
GGCCTGCCAACAAGGGACGG+AGG + chr4_4:64859505-64859524 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 64856982 64861255 64856982 ID=Msa0695340;Name=Msa0695340
chr4_4 mRNA 64856982 64861255 64856982 ID=Msa0695340-mRNA-1;Parent=Msa0695340;Name=Msa0695340-mRNA-1;_AED=0.07;_eAED=0.07;_QI=313|1|1|1|1|1|7|199|620
chr4_4 exon 64856982 64857867 64856982 ID=Msa0695340-mRNA-1:exon:18629;Parent=Msa0695340-mRNA-1
chr4_4 exon 64858080 64858252 64858080 ID=Msa0695340-mRNA-1:exon:18628;Parent=Msa0695340-mRNA-1
chr4_4 exon 64858373 64858556 64858373 ID=Msa0695340-mRNA-1:exon:18627;Parent=Msa0695340-mRNA-1
chr4_4 exon 64858685 64858774 64858685 ID=Msa0695340-mRNA-1:exon:18626;Parent=Msa0695340-mRNA-1
chr4_4 exon 64858881 64859085 64858881 ID=Msa0695340-mRNA-1:exon:18625;Parent=Msa0695340-mRNA-1
chr4_4 exon 64859428 64859666 64859428 ID=Msa0695340-mRNA-1:exon:18624;Parent=Msa0695340-mRNA-1
chr4_4 exon 64860658 64861255 64860658 ID=Msa0695340-mRNA-1:exon:18623;Parent=Msa0695340-mRNA-1
chr4_4 five_prime_UTR 64860943 64861255 64860943 ID=Msa0695340-mRNA-1:five_prime_utr;Parent=Msa0695340-mRNA-1
chr4_4 CDS 64860658 64860942 64860658 ID=Msa0695340-mRNA-1:cds;Parent=Msa0695340-mRNA-1
chr4_4 CDS 64859428 64859666 64859428 ID=Msa0695340-mRNA-1:cds;Parent=Msa0695340-mRNA-1
chr4_4 CDS 64858881 64859085 64858881 ID=Msa0695340-mRNA-1:cds;Parent=Msa0695340-mRNA-1
chr4_4 CDS 64858685 64858774 64858685 ID=Msa0695340-mRNA-1:cds;Parent=Msa0695340-mRNA-1
chr4_4 CDS 64858373 64858556 64858373 ID=Msa0695340-mRNA-1:cds;Parent=Msa0695340-mRNA-1
chr4_4 CDS 64858080 64858252 64858080 ID=Msa0695340-mRNA-1:cds;Parent=Msa0695340-mRNA-1
chr4_4 CDS 64857181 64857867 64857181 ID=Msa0695340-mRNA-1:cds;Parent=Msa0695340-mRNA-1
chr4_4 three_prime_UTR 64856982 64857180 64856982 ID=Msa0695340-mRNA-1:three_prime_utr;Parent=Msa0695340-mRNA-1
Gene Sequence

>Msa0695340

ATGGGTTTCAATGTTAATAATACTAATAGCTATGGAAATGCAGGGTTGGATCCTCAATTAGCAGCTGAGAAAGCTGTGAGTGTGATTGGTCAAGGATATAATTTATGCAATGATATAAGATTCTCTGCTTGCAAGTCAAGGTTGATCCATATTGACAATAGTAGTTCAAACACAAGGGACCTTGTTTTTCCTTCTGGTGTTGTTGTCCCTAATGTTCCCTTATCTATTAAGTCTGATAAAGGTGATTGTACCAGGTTTCGATCCGATGTCCTCACTTTTAATCAGATGTCTGAGCATTTCAACAGACAACTATCTTTGTCGGGAAAGATTCCATCCGGCCAATTCAATAGCATGTTCGACATGAAAAAATGTTGGTCCAGGGATGCAGCTTCCACTAAGAGCCTTGCCTTTGATGGATGGTTCATAACATTGTATAGCGTTGAATTAGATAGAACTAACATTACTCTTTCTGAAACTGTGAAAAAAGACGTACCTTGTTCGTGGAACCCTGCTGCTCTTGCCGAGTTCATTGAAAAGTATGGTACACACGTAGTTGTTGGGGTGAAGATGGGAGGTAAAGATGTTGTTCATATCAAGCAGTCAAAAAATTCAGATACTCCGCCGACTGAACTGCAGAAATTGCTTAAGCAATTAGCCGACGAGAGGTTTTCTGTGGATTCAAATCAAAGTTCTAATGTCAATCCTGCGGCTATATCAGGAAAATTAAAGGATGATCATACAAAGCTTAGGGGACTGCACAGGAACAAACCTCCGTCCCTTGTTGGCAGGCCAATTGTAAAAAGTCACTCCAAGAATGATGATATAGTAAGCATTTCTGTTCGAAGGGGAGGTATTGATGTATGCCAACCTTATAACCAGTGGCTCTCAACCATATCACAGTCTCCTAATGTCATATCAATGTCTTTGGTGCCTATTACTTCATTACTGAATTCTGTCCCAGGAAATGGATTTTTAAGTCATGCGGTGAATTTGTATCTTAGATATAAACCTGCAATAGAAGAACTTCATCAATTTCTAGAGTTTCAGTTGCCACGACAATGGGCACCGATGTATGGTGATCTGCCTCTTGTATTCGACCATAAGTATAAAAGGAATGCGTCTCCGTCACTTCAGTTCACTCTTATGGGACCCAAACTTTATGTTAATACCGTGAAGGTTGATTCGGGAAACCGGCCGGTAACAGGTATTCGTTTATACTTGGAAGGCAAGAAAAATAACCACCTATCAATCCATCTTCAGCATCTTTCAGAGGTTCCAGGTGTCCTAGAAATTTCAGAAGATCACAGTTATGATCCTATTGACGAACCAGATGGCCGAGGCTACTACGAACCAGTGAAGTGGAGCATGTTTTCTCATGTTTACACAGCACCTGTACAATACAATAGCTCCAGAATGGATGAGTCTACATCTATTGTGACAAAGGCTTGGTTTGAGGTTAAGCTAATGGGAATGAAGAAAGTACTTTTCTTAAGACTTGGATACTCAACGGTAGCATCAGCGAAAATTCGCAGATCAGAATGGGATGGACCTTCAACCTCATCTAGAAAATCAGGATTTTTTTCAGCATTGATGAGTGCAAAGCTTAGCCAAGGATTGCATTCACCTGAGAAACAATCTAAAGTTGACATAAACTCGGCAATTTATCATGGTGGTCCACCTGTGCCAAGAAGGGCTCCCAAAATGCTTAATTTTGTCGACACAAAGGAAATGGTAAGAGGTCCAGAGGATCCACCAGGATATTGGGTTGTCACTGGTGCAAAGTTATGTGTAGAAGGTGGCAGAATCTCAATCAAGGCAAAATATTCTTTGTTGACTATATTATCAGAAGAATCTATTATGTAG

Protein sequence

>Msa0695340

MGFNVNNTNSYGNAGLDPQLAAEKAVSVIGQGYNLCNDIRFSACKSRLIHIDNSSSNTRDLVFPSGVVVPNVPLSIKSDKGDCTRFRSDVLTFNQMSEHFNRQLSLSGKIPSGQFNSMFDMKKCWSRDAASTKSLAFDGWFITLYSVELDRTNITLSETVKKDVPCSWNPAALAEFIEKYGTHVVVGVKMGGKDVVHIKQSKNSDTPPTELQKLLKQLADERFSVDSNQSSNVNPAAISGKLKDDHTKLRGLHRNKPPSLVGRPIVKSHSKNDDIVSISVRRGGIDVCQPYNQWLSTISQSPNVISMSLVPITSLLNSVPGNGFLSHAVNLYLRYKPAIEELHQFLEFQLPRQWAPMYGDLPLVFDHKYKRNASPSLQFTLMGPKLYVNTVKVDSGNRPVTGIRLYLEGKKNNHLSIHLQHLSEVPGVLEISEDHSYDPIDEPDGRGYYEPVKWSMFSHVYTAPVQYNSSRMDESTSIVTKAWFEVKLMGMKKVLFLRLGYSTVASAKIRRSEWDGPSTSSRKSGFFSALMSAKLSQGLHSPEKQSKVDINSAIYHGGPPVPRRAPKMLNFVDTKEMVRGPEDPPGYWVVTGAKLCVEGGRISIKAKYSLLTILSEESIM*