Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0695340 | XP_013456979.1 | 98.710 | 620 | 8 | 0 | 1 | 620 | 1 | 620 | 0.0 | 1262 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0695340 | sp|Q9SGN6|NSL1_ARATH | 62.439 | 615 | 210 | 9 | 16 | 620 | 9 | 612 | 0.0 | 765 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0695340 | A0A072UYS7 | 98.710 | 620 | 8 | 0 | 1 | 620 | 1 | 620 | 0.0 | 1262 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0557600 | Msa0695340 | 0.812755 | 3.613497e-51 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0695340 | MtrunA17_Chr4g0046841 | 98.710 | 620 | 8 | 0 | 1 | 620 | 1 | 620 | 0.0 | 1262 |
Msa0695340 | MtrunA17_Chr2g0277061 | 52.658 | 602 | 261 | 9 | 21 | 614 | 11 | 596 | 0.0 | 614 |
Msa0695340 | MtrunA17_Chr8g0385121 | 51.410 | 603 | 272 | 9 | 20 | 617 | 8 | 594 | 0.0 | 573 |
Msa0695340 | MtrunA17_Chr8g0377631 | 41.491 | 617 | 320 | 11 | 25 | 611 | 11 | 616 | 8.41e-160 | 472 |
Msa0695340 | MtrunA17_Chr3g0122211 | 40.492 | 610 | 335 | 9 | 23 | 611 | 15 | 617 | 2.81e-156 | 462 |
Msa0695340 | MtrunA17_Chr8g0385131 | 43.046 | 604 | 290 | 11 | 21 | 616 | 12 | 569 | 2.82e-153 | 453 |
Msa0695340 | MtrunA17_Chr8g0391931 | 42.379 | 597 | 323 | 10 | 22 | 611 | 6 | 588 | 8.86e-148 | 440 |
Msa0695340 | MtrunA17_Chr8g0385181 | 40.735 | 599 | 292 | 14 | 21 | 613 | 12 | 553 | 1.65e-143 | 427 |
Msa0695340 | MtrunA17_Chr4g0013011 | 38.512 | 605 | 326 | 11 | 21 | 611 | 10 | 582 | 4.45e-133 | 402 |
Msa0695340 | MtrunA17_Chr2g0284691 | 38.602 | 601 | 297 | 13 | 25 | 611 | 22 | 564 | 8.93e-128 | 387 |
Msa0695340 | MtrunA17_Chr7g0274871 | 89.441 | 161 | 13 | 1 | 2 | 162 | 107 | 263 | 4.37e-95 | 293 |
Msa0695340 | MtrunA17_Chr8g0385171 | 40.566 | 318 | 148 | 9 | 21 | 335 | 12 | 291 | 3.59e-63 | 211 |
Msa0695340 | MtrunA17_Chr8g0385161 | 40.636 | 283 | 133 | 7 | 339 | 619 | 1 | 250 | 2.22e-55 | 188 |
Msa0695340 | MtrunA17_Chr7g0274901 | 88.235 | 85 | 9 | 1 | 382 | 465 | 1 | 85 | 1.59e-42 | 147 |
Msa0695340 | MtrunA17_Chr7g0274911 | 79.710 | 69 | 11 | 1 | 527 | 592 | 12 | 80 | 3.66e-28 | 110 |
Msa0695340 | MtrunA17_Chr7g0274881 | 92.593 | 54 | 4 | 0 | 190 | 243 | 1 | 54 | 9.38e-27 | 103 |
Msa0695340 | MtrunA17_Chr8g0385141 | 47.368 | 114 | 58 | 2 | 127 | 239 | 12 | 124 | 2.51e-26 | 105 |
Msa0695340 | MtrunA17_Chr7g0274891 | 93.548 | 31 | 2 | 0 | 335 | 365 | 40 | 70 | 4.43e-14 | 67.4 |
Msa0695340 | MtrunA17_Chr8g0385151 | 56.522 | 46 | 20 | 0 | 291 | 336 | 3 | 48 | 1.05e-12 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0695340 | AT1G28380.1 | 62.439 | 615 | 210 | 9 | 16 | 620 | 9 | 612 | 0.0 | 765 |
Msa0695340 | AT4G24290.2 | 51.639 | 610 | 265 | 10 | 21 | 619 | 10 | 600 | 0.0 | 601 |
Msa0695340 | AT4G24290.3 | 51.639 | 610 | 265 | 10 | 21 | 619 | 10 | 600 | 0.0 | 601 |
Msa0695340 | AT1G14780.1 | 38.961 | 616 | 342 | 13 | 23 | 611 | 10 | 618 | 1.63e-137 | 415 |
Msa0695340 | AT1G29690.1 | 38.833 | 600 | 290 | 11 | 25 | 611 | 24 | 559 | 2.06e-133 | 402 |
Msa0695340 | AT4G24290.1 | 49.853 | 339 | 147 | 7 | 21 | 348 | 10 | 336 | 3.29e-102 | 314 |
Find 159 sgRNAs with CRISPR-Local
Find 314 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTCGACAAAATTAAGCATTT+TGG | 0.150769 | 4_4:+64857325 | None:intergenic |
TGTGATCTTCTGAAATTTCT+AGG | 0.199569 | 4_4:+64857738 | None:intergenic |
CACGGTATTAACATAAAGTT+TGG | 0.221178 | 4_4:+64858083 | None:intergenic |
TCTATATACTATTCTTTATT+AGG | 0.229619 | 4_4:+64856998 | None:intergenic |
GTCACTTCAGTTCACTCTTA+TGG | 0.231370 | 4_4:-64858109 | Msa0695340:CDS |
ACTAAGAGCCTTGCCTTTGA+TGG | 0.266531 | 4_4:-64859536 | Msa0695340:CDS |
TTCAGGTTCATTGAAAAGTA+TGG | 0.283487 | 4_4:-64859068 | Msa0695340:intron |
CAGAGGATCCACCAGGATAT+TGG | 0.288457 | 4_4:-64857280 | Msa0695340:CDS |
CAGCATCTTTCAGAGGTTCC+AGG | 0.308912 | 4_4:-64857764 | Msa0695340:CDS |
TTAATAGATAAGGGAACATT+AGG | 0.309328 | 4_4:+64860713 | None:intergenic |
GGCTATATCAGGAAAATTAA+AGG | 0.311318 | 4_4:-64858880 | Msa0695340:intron |
TGATGAAGTTCTTCTATTGC+AGG | 0.314788 | 4_4:+64858225 | None:intergenic |
GTTGAGAGCCACTGGTTATA+AGG | 0.316965 | 4_4:+64858486 | None:intergenic |
TATTCGACCATAAGTATAAA+AGG | 0.318647 | 4_4:-64858143 | Msa0695340:CDS |
TTCAATAAGCAGGTTGATTC+GGG | 0.318983 | 4_4:-64857857 | Msa0695340:intron |
GTCAATCCTGCGGCTATATC+AGG | 0.325598 | 4_4:-64858891 | Msa0695340:CDS |
CTGAATTCTGTCCCAGGAAA+TGG | 0.330279 | 4_4:-64858408 | Msa0695340:CDS |
TTGAACTACTATTGTCAATA+TGG | 0.331381 | 4_4:+64860774 | None:intergenic |
AGATGTAGACTCATCCATTC+TGG | 0.349924 | 4_4:+64857613 | None:intergenic |
TCACTTCAGTTCACTCTTAT+GGG | 0.350996 | 4_4:-64858108 | Msa0695340:CDS |
GGCGTAAACCGACCTGAATA+TGG | 0.355136 | 4_4:-64857058 | Msa0695340:three_prime_UTR |
ACAATGAATTTGCCATATTC+AGG | 0.359445 | 4_4:+64857046 | None:intergenic |
TCAACTTTAGATTGTTTCTC+AGG | 0.363374 | 4_4:+64857398 | None:intergenic |
TCGTAGTAGCCTCGGCCATC+TGG | 0.365164 | 4_4:+64857695 | None:intergenic |
CGGCCATCTGGTTCGTCAAT+AGG | 0.368985 | 4_4:+64857707 | None:intergenic |
TTTCAATAAGCAGGTTGATT+CGG | 0.374923 | 4_4:-64857858 | Msa0695340:intron |
TTGGTTTGAGGTTAAGCTAA+TGG | 0.376476 | 4_4:-64857576 | Msa0695340:CDS |
TCGGGAAACCGGCCGGTAAC+AGG | 0.378523 | 4_4:-64857839 | Msa0695340:CDS |
AGAGGATCCACCAGGATATT+GGG | 0.391881 | 4_4:-64857279 | Msa0695340:CDS |
TGTCGAACATGCTATTGAAT+TGG | 0.395267 | 4_4:+64859591 | None:intergenic |
TAATGTCATATCAATGTCTT+TGG | 0.396557 | 4_4:-64858448 | Msa0695340:CDS |
TGGTTTGAGGTTAAGCTAAT+GGG | 0.397784 | 4_4:-64857575 | Msa0695340:CDS |
GAATTCAGTAATGAAGTAAT+AGG | 0.399717 | 4_4:+64858423 | None:intergenic |
TCAACCTCATCTAGAAAATC+AGG | 0.407263 | 4_4:-64857470 | Msa0695340:CDS |
TGTGACAAAGGCTTGGTTTG+AGG | 0.418183 | 4_4:-64857588 | Msa0695340:CDS |
AGCAGGTTGATTCGGGAAAC+CGG | 0.418321 | 4_4:-64857850 | Msa0695340:intron |
AAAGACATTGATATGACATT+AGG | 0.419683 | 4_4:+64858450 | None:intergenic |
GATGCTGAAGATGGATTGAT+AGG | 0.420463 | 4_4:+64857780 | None:intergenic |
AACAGACAACTATCTTTGTC+GGG | 0.421260 | 4_4:-64859629 | Msa0695340:CDS |
ATGGTACACACGTAGTTGTT+GGG | 0.421463 | 4_4:-64859049 | Msa0695340:CDS |
CTTAGTGGAAGCTGCATCCC+TGG | 0.425444 | 4_4:+64859553 | None:intergenic |
GGATGATCATACAAAGCTTA+GGG | 0.425872 | 4_4:-64858753 | Msa0695340:CDS |
CAATATCCTGGTGGATCCTC+TGG | 0.428546 | 4_4:+64857281 | None:intergenic |
CGTAGTTGTTGGGGTGAAGA+TGG | 0.431793 | 4_4:-64859039 | Msa0695340:CDS |
TTATCAGACTTAATAGATAA+GGG | 0.435251 | 4_4:+64860704 | None:intergenic |
GCTTTCTCAGCTGCTAATTG+AGG | 0.435446 | 4_4:+64860869 | None:intergenic |
ACTAATAGCTATGGAAATGC+AGG | 0.435774 | 4_4:-64860899 | Msa0695340:CDS |
ACTTACTCGGCAAGAGCAGC+AGG | 0.435956 | 4_4:+64859422 | None:intergenic |
CGACAATGGGCACCGATGTA+TGG | 0.437293 | 4_4:-64858180 | Msa0695340:CDS |
TTTATCAGACTTAATAGATA+AGG | 0.439387 | 4_4:+64860703 | None:intergenic |
TTATCTATTAAGTCTGATAA+AGG | 0.439839 | 4_4:-64860701 | Msa0695340:CDS |
AGGATGATCATACAAAGCTT+AGG | 0.446411 | 4_4:-64858754 | Msa0695340:CDS |
TTGGGAGCCCTTCTTGGCAC+AGG | 0.449347 | 4_4:+64857344 | None:intergenic |
AACAAACCTCCGTCCCTTGT+TGG | 0.451722 | 4_4:-64858719 | Msa0695340:CDS |
CAACAGACAACTATCTTTGT+CGG | 0.454285 | 4_4:-64859630 | Msa0695340:CDS |
AACAGGTATTCGTTTATACT+TGG | 0.457606 | 4_4:-64857822 | Msa0695340:CDS |
ATCAAAGGCAAGGCTCTTAG+TGG | 0.462014 | 4_4:+64859538 | None:intergenic |
GTTAATAATACTAATAGCTA+TGG | 0.462044 | 4_4:-64860908 | Msa0695340:CDS |
AACCTCCGTCCCTTGTTGGC+AGG | 0.463366 | 4_4:-64858715 | Msa0695340:CDS |
CTGGAGCTATTGTATTGTAC+AGG | 0.472485 | 4_4:+64857632 | None:intergenic |
GTTTCAGTTGCCACGACAAT+GGG | 0.473101 | 4_4:-64858193 | Msa0695340:CDS |
ACGGTATTAACATAAAGTTT+GGG | 0.475299 | 4_4:+64858084 | None:intergenic |
CTGATAAAGGTGATTGTACC+AGG | 0.476222 | 4_4:-64860688 | Msa0695340:CDS |
GGAGCCCTTCTTGGCACAGG+TGG | 0.479630 | 4_4:+64857347 | None:intergenic |
CATCTATTGTGACAAAGGCT+TGG | 0.480707 | 4_4:-64857595 | Msa0695340:CDS |
TATGTAAGTTGAACTCTTCA+CGG | 0.481674 | 4_4:+64860971 | None:intergenic |
GTGGTCCACCTGTGCCAAGA+AGG | 0.484031 | 4_4:-64857352 | Msa0695340:CDS |
TATAAACGAATACCTGTTAC+CGG | 0.485389 | 4_4:+64857827 | None:intergenic |
GAGAAAGCTGTGAGTGTGAT+TGG | 0.485451 | 4_4:-64860854 | Msa0695340:CDS |
CCTCTGAAAGATGCTGAAGA+TGG | 0.486026 | 4_4:+64857771 | None:intergenic |
CGAAAATTCGCAGATCAGAA+TGG | 0.487617 | 4_4:-64857502 | Msa0695340:CDS |
CCAGGATATTGGGTTGTCAC+TGG | 0.487824 | 4_4:-64857269 | Msa0695340:CDS |
CTTTCTTATCATTCTATGTG+TGG | 0.488535 | 4_4:-64861000 | Msa0695340:five_prime_UTR |
TATGGTACACACGTAGTTGT+TGG | 0.495177 | 4_4:-64859050 | Msa0695340:CDS |
AGAGCCTTGCCTTTGATGGA+TGG | 0.511034 | 4_4:-64859532 | Msa0695340:CDS |
GGTATTCGTTTATACTTGGA+AGG | 0.511213 | 4_4:-64857818 | Msa0695340:CDS |
AGCAATTTCTGCAGTTCAGT+CGG | 0.511584 | 4_4:+64858966 | None:intergenic |
ATGTAAGTTGAACTCTTCAC+GGG | 0.514173 | 4_4:+64860972 | None:intergenic |
GAAAATTCGCAGATCAGAAT+GGG | 0.514979 | 4_4:-64857501 | Msa0695340:CDS |
TAGTAAGCATTTCTGTTCGA+AGG | 0.519900 | 4_4:-64858530 | Msa0695340:CDS |
AGGTCATAACACTTCTATGA+TGG | 0.520173 | 4_4:+64861111 | None:intergenic |
TTACAATTGGCCTGCCAACA+AGG | 0.520191 | 4_4:+64858705 | None:intergenic |
GGTGCAAAGTTATGTGTAGA+AGG | 0.521969 | 4_4:-64857248 | Msa0695340:CDS |
AGAGCCACTGGTTATAAGGT+TGG | 0.524639 | 4_4:+64858490 | None:intergenic |
TAGCTATGGAAATGCAGGGT+TGG | 0.526822 | 4_4:-64860894 | Msa0695340:CDS |
TTGTCGGGAAAGATTCCATC+CGG | 0.528086 | 4_4:-64859614 | Msa0695340:CDS |
GACATTAGGAGACTGTGATA+TGG | 0.529982 | 4_4:+64858464 | None:intergenic |
TCTCAGGTGAATGCAATCCT+TGG | 0.530122 | 4_4:+64857414 | None:intergenic |
AGTTTCAGTTGCCACGACAA+TGG | 0.531590 | 4_4:-64858194 | Msa0695340:CDS |
GAAAACATGCTCCACTTCAC+TGG | 0.533461 | 4_4:+64857671 | None:intergenic |
AGTAAGCATTTCTGTTCGAA+GGG | 0.537776 | 4_4:-64858529 | Msa0695340:CDS |
GACACAAAGGAAATGGTAAG+AGG | 0.538834 | 4_4:-64857305 | Msa0695340:CDS |
ATAAACTCGGCAATTTATCA+TGG | 0.539597 | 4_4:-64857374 | Msa0695340:CDS |
GATTCTCTGCTTGCAAGTCA+AGG | 0.541130 | 4_4:-64860802 | Msa0695340:CDS |
TAATAGATAAGGGAACATTA+GGG | 0.541232 | 4_4:+64860714 | None:intergenic |
CCATCTTCAGCATCTTTCAG+AGG | 0.545066 | 4_4:-64857771 | Msa0695340:CDS |
AATATAATATATGTTTGAAG+AGG | 0.552088 | 4_4:+64861091 | None:intergenic |
AGCATTTCTGTTCGAAGGGG+AGG | 0.555180 | 4_4:-64858525 | Msa0695340:CDS |
GGAAGAAGGAATTACCTTCA+CGG | 0.561197 | 4_4:+64858065 | None:intergenic |
ACAATACAATAGCTCCAGAA+TGG | 0.564872 | 4_4:-64857627 | Msa0695340:CDS |
TGGTCCACCTGTGCCAAGAA+GGG | 0.573430 | 4_4:-64857351 | Msa0695340:CDS |
TCTGAAATTTCTAGGACACC+TGG | 0.574524 | 4_4:+64857746 | None:intergenic |
GTAGTTGTTGGGGTGAAGAT+GGG | 0.574754 | 4_4:-64859038 | Msa0695340:CDS |
ATGCTATTGAATTGGCCGGA+TGG | 0.576725 | 4_4:+64859599 | None:intergenic |
GGGTGGAGAAGTTAAAAGGA+CGG | 0.577002 | 4_4:+64861204 | None:intergenic |
CCAGTGACAACCCAATATCC+TGG | 0.577834 | 4_4:+64857269 | None:intergenic |
GTGATATGGTTGAGAGCCAC+TGG | 0.578254 | 4_4:+64858478 | None:intergenic |
TACAATTGGCCTGCCAACAA+GGG | 0.578423 | 4_4:+64858706 | None:intergenic |
AGGTGGCAGAATCTCAATCA+AGG | 0.582915 | 4_4:-64857228 | Msa0695340:CDS |
AACGAATACCTGTTACCGGC+CGG | 0.583865 | 4_4:+64857831 | None:intergenic |
TACTTATGGTCGAATACAAG+AGG | 0.584243 | 4_4:+64858150 | None:intergenic |
TGTTATGAACCATCCATCAA+AGG | 0.584689 | 4_4:+64859523 | None:intergenic |
TCATTACTGAATTCTGTCCC+AGG | 0.588026 | 4_4:-64858414 | Msa0695340:CDS |
GAGGACATCGGATCGAAACC+TGG | 0.588872 | 4_4:+64860670 | None:intergenic |
TTTCAAAGGGTCATATACGC+GGG | 0.593654 | 4_4:+64861141 | None:intergenic |
TGAATTTGCCATATTCAGGT+CGG | 0.595126 | 4_4:+64857050 | None:intergenic |
GGTTGATTCGGGAAACCGGC+CGG | 0.595912 | 4_4:-64857846 | Msa0695340:CDS |
ATGAGTGCAAAGCTTAGCCA+AGG | 0.599460 | 4_4:-64857431 | Msa0695340:CDS |
GCTACTACGAACCAGTGAAG+TGG | 0.605145 | 4_4:-64857682 | Msa0695340:CDS |
GTCTACATCTATTGTGACAA+AGG | 0.606707 | 4_4:-64857600 | Msa0695340:CDS |
TACATCGGTGCCCATTGTCG+TGG | 0.607453 | 4_4:+64858183 | None:intergenic |
ATTGGCCTGCCAACAAGGGA+CGG | 0.613832 | 4_4:+64858710 | None:intergenic |
CTTAAGACTTGGATACTCAA+CGG | 0.619317 | 4_4:-64857534 | Msa0695340:CDS |
CTAATAGCTATGGAAATGCA+GGG | 0.619542 | 4_4:-64860898 | Msa0695340:CDS |
CAATGACCTGATTAAAAGTG+AGG | 0.619839 | 4_4:+64860651 | None:intergenic |
TGAACCATCCATCAAAGGCA+AGG | 0.620613 | 4_4:+64859528 | None:intergenic |
ATTCGCAGATCAGAATGGGA+TGG | 0.626214 | 4_4:-64857497 | Msa0695340:CDS |
AATTTCTGCAGTTCAGTCGG+CGG | 0.627237 | 4_4:+64858969 | None:intergenic |
AGAGGTCCAGAGGATCCACC+AGG | 0.627751 | 4_4:-64857287 | Msa0695340:CDS |
CAAAGCTTAGGGGACTGCAC+AGG | 0.627915 | 4_4:-64858742 | Msa0695340:CDS |
TCACTGGTTCGTAGTAGCCT+CGG | 0.627996 | 4_4:+64857687 | None:intergenic |
ACTTTATGTTAATACCGTGA+AGG | 0.630084 | 4_4:-64858079 | Msa0695340:intron |
GCAGCAGGGTTCCACGAACA+AGG | 0.630710 | 4_4:+64859437 | None:intergenic |
GGAAATGGTAAGAGGTCCAG+AGG | 0.631442 | 4_4:-64857297 | Msa0695340:CDS |
GATCCTATTGACGAACCAGA+TGG | 0.633830 | 4_4:-64857710 | Msa0695340:CDS |
ATTGACGAACCAGATGGCCG+AGG | 0.634066 | 4_4:-64857704 | Msa0695340:CDS |
GTTGTTGGGGTGAAGATGGG+AGG | 0.635084 | 4_4:-64859035 | Msa0695340:CDS |
ATAAGAGTGAACTGAAGTGA+CGG | 0.635680 | 4_4:+64858111 | None:intergenic |
GAACATGCTATTGAATTGGC+CGG | 0.637602 | 4_4:+64859595 | None:intergenic |
ATCTAAAGTTGACATAAACT+CGG | 0.638507 | 4_4:-64857387 | Msa0695340:CDS |
TTAGGGACAACAACACCAGA+AGG | 0.641365 | 4_4:+64860731 | None:intergenic |
TGGTACACACGTAGTTGTTG+GGG | 0.641806 | 4_4:-64859048 | Msa0695340:CDS |
AACTCGGCAATTTATCATGG+TGG | 0.643726 | 4_4:-64857371 | Msa0695340:CDS |
ATCCACAGAAAACCTCTCGT+CGG | 0.645918 | 4_4:+64858932 | None:intergenic |
ACAATAGTAGTTCAAACACA+AGG | 0.647296 | 4_4:-64860766 | Msa0695340:CDS |
TTAAGCAATTAGCCGACGAG+AGG | 0.648867 | 4_4:-64858944 | Msa0695340:CDS |
GCTGTGAGTGTGATTGGTCA+AGG | 0.654752 | 4_4:-64860848 | Msa0695340:CDS |
GGCCTGCCAACAAGGGACGG+AGG | 0.659617 | 4_4:+64858713 | None:intergenic |
GTAAGCATTTCTGTTCGAAG+GGG | 0.662446 | 4_4:-64858528 | Msa0695340:CDS |
TATGCCAACCTTATAACCAG+TGG | 0.666189 | 4_4:-64858494 | Msa0695340:CDS |
CTGATTAAAAGTGAGGACAT+CGG | 0.670013 | 4_4:+64860658 | None:intergenic |
AAGTTCTAATGTCAATCCTG+CGG | 0.679076 | 4_4:-64858901 | Msa0695340:CDS |
GATGATCATACAAAGCTTAG+GGG | 0.687701 | 4_4:-64858752 | Msa0695340:CDS |
CTTACTCGGCAAGAGCAGCA+GGG | 0.689201 | 4_4:+64859423 | None:intergenic |
GCTGAAGATGGATTGATAGG+TGG | 0.699756 | 4_4:+64857783 | None:intergenic |
GTGACAACCCAATATCCTGG+TGG | 0.702984 | 4_4:+64857272 | None:intergenic |
CAATAGTAGTTCAAACACAA+GGG | 0.705935 | 4_4:-64860765 | Msa0695340:CDS |
AGAGGCAGATCACCATACAT+CGG | 0.713318 | 4_4:+64858168 | None:intergenic |
GCAAAGTTATGTGTAGAAGG+TGG | 0.744121 | 4_4:-64857245 | Msa0695340:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATCTTATGATAATTATTTTT+GGG | + | chr4_4:64857036-64857055 | None:intergenic | 10.0% |
!!! | TATCTTATGATAATTATTTT+TGG | + | chr4_4:64857037-64857056 | None:intergenic | 10.0% |
!!! | TTTTGTATTTAAATTAGTTA+GGG | + | chr4_4:64858366-64858385 | None:intergenic | 10.0% |
!!! | TTTTGTATTTAAATTAGTTA+GGG | - | chr4_4:64858366-64858385 | Msa0695340:intron | 10.0% |
!!! | TCTTATGATAATTATTTTTG+GGG | + | chr4_4:64857035-64857054 | None:intergenic | 15.0% |
!! | AATATAATATATGTTTGAAG+AGG | + | chr4_4:64857127-64857146 | None:intergenic | 15.0% |
!! | ATGAAACTATTGAATATAAT+TGG | + | chr4_4:64857671-64857690 | None:intergenic | 15.0% |
!! | TTTGTATTTAAATTAGTTAG+GGG | + | chr4_4:64858367-64858386 | None:intergenic | 15.0% |
!!! | GTTTTGTATTTAAATTAGTT+AGG | + | chr4_4:64858365-64858384 | None:intergenic | 15.0% |
!! | AAATAAAAAAAAATGACACA+TGG | - | chr4_4:64858274-64858293 | Msa0695340:intron | 15.0% |
!!! | GTTTTGTATTTAAATTAGTT+AGG | - | chr4_4:64858365-64858384 | Msa0695340:intron | 15.0% |
!! | TTTGTATTTAAATTAGTTAG+GGG | - | chr4_4:64858367-64858386 | Msa0695340:intron | 15.0% |
!!! | ATATGAAAATGGAAATTTTA+GGG | - | chr4_4:64858490-64858509 | Msa0695340:CDS | 15.0% |
!!! | TATTATAAGAATTTCTTTTC+AGG | - | chr4_4:64859659-64859678 | Msa0695340:intron | 15.0% |
!! | AGAAGAAAAAAATAAGTATT+GGG | + | chr4_4:64859902-64859921 | None:intergenic | 15.0% |
!!! | TAATAACTATTTAAGAGTAT+TGG | + | chr4_4:64860181-64860200 | None:intergenic | 15.0% |
!! | TCTATATACTATTCTTTATT+AGG | + | chr4_4:64861220-64861239 | None:intergenic | 15.0% |
!!! | CTTATGATAATTATTTTTGG+GGG | + | chr4_4:64857034-64857053 | None:intergenic | 20.0% |
!! | GTTAATAATACTAATAGCTA+TGG | - | chr4_4:64857307-64857326 | Msa0695340:CDS | 20.0% |
!! | TTATCAGACTTAATAGATAA+GGG | + | chr4_4:64857514-64857533 | None:intergenic | 20.0% |
!! | TTTATCAGACTTAATAGATA+AGG | + | chr4_4:64857515-64857534 | None:intergenic | 20.0% |
!! | TTATCTATTAAGTCTGATAA+AGG | - | chr4_4:64857514-64857533 | Msa0695340:CDS | 20.0% |
!!! | ATTATATGATTTTCTAGTTG+TGG | - | chr4_4:64857846-64857865 | Msa0695340:CDS | 20.0% |
!! | TTGCAACAAAAAATTTAAAG+TGG | + | chr4_4:64858000-64858019 | None:intergenic | 20.0% |
!! | TAAAAAAAAGGTAAATCAAC+AGG | + | chr4_4:64858125-64858144 | None:intergenic | 20.0% |
!!! | GTTGATTTACCTTTTTTTTA+AGG | - | chr4_4:64858125-64858144 | Msa0695340:CDS | 20.0% |
!! | TTGTATTTAAATTAGTTAGG+GGG | + | chr4_4:64858368-64858387 | None:intergenic | 20.0% |
!!! | TTTTATTTTTTTTTGGCCTT+GGG | + | chr4_4:64858262-64858281 | None:intergenic | 20.0% |
!!! | TTTTTATTTTTTTTTGGCCT+TGG | + | chr4_4:64858263-64858282 | None:intergenic | 20.0% |
!! | TTGTATTTAAATTAGTTAGG+GGG | - | chr4_4:64858368-64858387 | Msa0695340:intron | 20.0% |
!! | CATAAATGGGAATTAAAAAA+TGG | + | chr4_4:64858442-64858461 | None:intergenic | 20.0% |
!!! | CATTTTTTAATTCCCATTTA+TGG | - | chr4_4:64858440-64858459 | Msa0695340:CDS | 20.0% |
!! | AAAAAACATGTACCATAAAT+GGG | + | chr4_4:64858455-64858474 | None:intergenic | 20.0% |
!! | AAAAAAACATGTACCATAAA+TGG | + | chr4_4:64858456-64858475 | None:intergenic | 20.0% |
!!! | TTTATGGTACATGTTTTTTT+TGG | - | chr4_4:64858456-64858475 | Msa0695340:CDS | 20.0% |
!! | ACATAAAAGTGATATGAAAA+TGG | - | chr4_4:64858479-64858498 | Msa0695340:CDS | 20.0% |
!!! | GATATGAAAATGGAAATTTT+AGG | - | chr4_4:64858489-64858508 | Msa0695340:CDS | 20.0% |
!!! | TATGAAAATGGAAATTTTAG+GGG | - | chr4_4:64858491-64858510 | Msa0695340:CDS | 20.0% |
!! | AATCTGAATTTCAGTTAAAT+TGG | - | chr4_4:64858538-64858557 | Msa0695340:intron | 20.0% |
!! | TAAAACTATAAGCATTCATT+TGG | - | chr4_4:64858939-64858958 | Msa0695340:CDS | 20.0% |
!! | AAGAAATAAAGATCTAAGTA+AGG | + | chr4_4:64859054-64859073 | None:intergenic | 20.0% |
!!! | AGTTTAAAACACTATTAACT+CGG | + | chr4_4:64859112-64859131 | None:intergenic | 20.0% |
!! | AGAACATGAAGATAAAAATA+TGG | - | chr4_4:64859383-64859402 | Msa0695340:intron | 20.0% |
!! | TGAAGATAAAAATATGGAAA+TGG | - | chr4_4:64859389-64859408 | Msa0695340:intron | 20.0% |
!! | CAGAAGAAAAAAATAAGTAT+TGG | + | chr4_4:64859903-64859922 | None:intergenic | 20.0% |
!!! | CAATACTTATTTTTTTCTTC+TGG | - | chr4_4:64859901-64859920 | Msa0695340:intron | 20.0% |
!! | TTCTTTGTTGAAATATATGT+TGG | - | chr4_4:64859931-64859950 | Msa0695340:intron | 20.0% |
! | TTGAACTACTATTGTCAATA+TGG | + | chr4_4:64857444-64857463 | None:intergenic | 25.0% |
! | TAATAGATAAGGGAACATTA+GGG | + | chr4_4:64857504-64857523 | None:intergenic | 25.0% |
! | TTAATAGATAAGGGAACATT+AGG | + | chr4_4:64857505-64857524 | None:intergenic | 25.0% |
! | CTATTGAATATAATTGGTCA+TGG | + | chr4_4:64857665-64857684 | None:intergenic | 25.0% |
! | TTCAATCAACTAGTTGAAAA+AGG | + | chr4_4:64857717-64857736 | None:intergenic | 25.0% |
!! | ATAGAAAAGTTATTGACTAG+TGG | - | chr4_4:64857760-64857779 | Msa0695340:CDS | 25.0% |
! | ACTATTGATAAAACACAGTT+AGG | + | chr4_4:64857826-64857845 | None:intergenic | 25.0% |
! | TAGTGATCAGAATTCAATTA+TGG | + | chr4_4:64857973-64857992 | None:intergenic | 25.0% |
! | CAAAAGTCAAATGGTTAAAA+AGG | + | chr4_4:64858084-64858103 | None:intergenic | 25.0% |
! | AATAGTCTTCAAAAGTCAAA+TGG | + | chr4_4:64858093-64858112 | None:intergenic | 25.0% |
! | GCAATTAAGCCTTAAAAAAA+AGG | + | chr4_4:64858137-64858156 | None:intergenic | 25.0% |
!!! | TTTATTTTTTTTTGGCCTTG+GGG | + | chr4_4:64858261-64858280 | None:intergenic | 25.0% |
! | TGCCAAAGATTCAATAATTA+GGG | - | chr4_4:64858338-64858357 | Msa0695340:intron | 25.0% |
!! | AAATGGCTTAATTGTACTTT+TGG | + | chr4_4:64858425-64858444 | None:intergenic | 25.0% |
! | GCATAACAATAATACTTACT+CGG | + | chr4_4:64858809-64858828 | None:intergenic | 25.0% |
! | AAATTCTCCTATATGTTGAT+TGG | - | chr4_4:64859085-64859104 | Msa0695340:intron | 25.0% |
! | CTAAATAAACATGATTCTTC+AGG | - | chr4_4:64859130-64859149 | Msa0695340:intron | 25.0% |
! | ATATCTTTGATCATGTTTGT+AGG | - | chr4_4:64859441-64859460 | Msa0695340:CDS | 25.0% |
! | AAAAATGCTAACATCATTCT+TGG | + | chr4_4:64859545-64859564 | None:intergenic | 25.0% |
! | AAAGACATTGATATGACATT+AGG | + | chr4_4:64859768-64859787 | None:intergenic | 25.0% |
! | TAATGTCATATCAATGTCTT+TGG | - | chr4_4:64859767-64859786 | Msa0695340:intron | 25.0% |
! | GAATTCAGTAATGAAGTAAT+AGG | + | chr4_4:64859795-64859814 | None:intergenic | 25.0% |
!!! | AAATGGATTTTTAAGTCATG+CGG | - | chr4_4:64859824-64859843 | Msa0695340:intron | 25.0% |
!!! | AAAAAATAAGTATTGGGCAA+AGG | + | chr4_4:64859896-64859915 | None:intergenic | 25.0% |
! | TATTCGACCATAAGTATAAA+AGG | - | chr4_4:64860072-64860091 | Msa0695340:intron | 25.0% |
! | ACGGTATTAACATAAAGTTT+GGG | + | chr4_4:64860134-64860153 | None:intergenic | 25.0% |
!!! | TATTTAAGAGTATTGGAACT+TGG | + | chr4_4:64860174-64860193 | None:intergenic | 25.0% |
!!! | AAAGTACTTTTCTTAAGACT+TGG | - | chr4_4:64860670-64860689 | Msa0695340:CDS | 25.0% |
!! | ATCTAAAGTTGACATAAACT+CGG | - | chr4_4:64860828-64860847 | Msa0695340:CDS | 25.0% |
!! | TCGACAAAATTAAGCATTTT+GGG | + | chr4_4:64860892-64860911 | None:intergenic | 25.0% |
!! | GTATATTTTGTGATGTCATT+CGG | - | chr4_4:64861136-64861155 | Msa0695340:five_prime_UTR | 25.0% |
!!! | ATGATAATTATTTTTGGGGG+TGG | + | chr4_4:64857031-64857050 | None:intergenic | 30.0% |
CTTTCTTATCATTCTATGTG+TGG | - | chr4_4:64857215-64857234 | Msa0695340:CDS | 30.0% | |
! | TATGTAAGTTGAACTCTTCA+CGG | + | chr4_4:64857247-64857266 | None:intergenic | 30.0% |
!! | ATAGCTGCAATATTTTTGTG+TGG | - | chr4_4:64857264-64857283 | Msa0695340:CDS | 30.0% |
ACAATAGTAGTTCAAACACA+AGG | - | chr4_4:64857449-64857468 | Msa0695340:CDS | 30.0% | |
CAATAGTAGTTCAAACACAA+GGG | - | chr4_4:64857450-64857469 | Msa0695340:CDS | 30.0% | |
AAGAAATTGAAGCAGAAGTA+AGG | + | chr4_4:64857599-64857618 | None:intergenic | 30.0% | |
TTACATATTTGTGCTGAACA+TGG | + | chr4_4:64857741-64857760 | None:intergenic | 30.0% | |
! | AGTTGATATATTGAGCAAGT+TGG | - | chr4_4:64857793-64857812 | Msa0695340:CDS | 30.0% |
TATGGTAATACTACGTACTA+CGG | + | chr4_4:64857955-64857974 | None:intergenic | 30.0% | |
GAATGATGTTTGTTTGCATT+TGG | - | chr4_4:64858039-64858058 | Msa0695340:intron | 30.0% | |
! | TTAAGGCTTAATTGCACTTT+TGG | - | chr4_4:64858142-64858161 | Msa0695340:CDS | 30.0% |
TGCCAAAGATTCAATACTTA+GGG | + | chr4_4:64858229-64858248 | None:intergenic | 30.0% | |
! | TATTGAATCTTTGGCAGTTT+TGG | - | chr4_4:64858233-64858252 | Msa0695340:CDS | 30.0% |
!!! | TTATTTTTTTTTGGCCTTGG+GGG | + | chr4_4:64858260-64858279 | None:intergenic | 30.0% |
! | TATTGAATCTTTGGCAGTTT+TGG | + | chr4_4:64858233-64858252 | None:intergenic | 30.0% |
CTGCCAAAGATTCAATAATT+AGG | - | chr4_4:64858337-64858356 | Msa0695340:intron | 30.0% | |
GCCAAAGATTCAATAATTAG+GGG | - | chr4_4:64858339-64858358 | Msa0695340:intron | 30.0% | |
TCCCCTAATTATTGAATCTT+TGG | + | chr4_4:64858343-64858362 | None:intergenic | 30.0% | |
TGTTCGACATGAAAAAATGT+TGG | - | chr4_4:64858638-64858657 | Msa0695340:intron | 30.0% | |
TGATGACTATTAACTAGAAG+AGG | + | chr4_4:64858837-64858856 | None:intergenic | 30.0% | |
!! | GTTTTAGCAATTATAGAGCA+AGG | + | chr4_4:64858925-64858944 | None:intergenic | 30.0% |
! | GTTGAATGTTACTGCTATTT+AGG | + | chr4_4:64858996-64859015 | None:intergenic | 30.0% |
! | TTCAGGTTCATTGAAAAGTA+TGG | - | chr4_4:64859147-64859166 | Msa0695340:intron | 30.0% |
GGCTATATCAGGAAAATTAA+AGG | - | chr4_4:64859335-64859354 | Msa0695340:intron | 30.0% | |
! | TTGGAGTGACTTTTTACAAT+TGG | + | chr4_4:64859526-64859545 | None:intergenic | 30.0% |
GACTTAAAAATCCATTTCCT+GGG | + | chr4_4:64859821-64859840 | None:intergenic | 30.0% | |
TGACTTAAAAATCCATTTCC+TGG | + | chr4_4:64859822-64859841 | None:intergenic | 30.0% | |
TTTGTATCTTAGATGTGAGT+AGG | - | chr4_4:64859851-64859870 | Msa0695340:intron | 30.0% | |
! | ACGCATTCCTTTTATACTTA+TGG | + | chr4_4:64860082-64860101 | None:intergenic | 30.0% |
CACGGTATTAACATAAAGTT+TGG | + | chr4_4:64860135-64860154 | None:intergenic | 30.0% | |
ACTTTATGTTAATACCGTGA+AGG | - | chr4_4:64860136-64860155 | Msa0695340:intron | 30.0% | |
ACTTGTATAGCAAGAATGTA+AGG | - | chr4_4:64860216-64860235 | Msa0695340:intron | 30.0% | |
AAGAACACACGATTATTTGT+AGG | - | chr4_4:64860298-64860317 | Msa0695340:intron | 30.0% | |
!! | TTTCAATAAGCAGGTTGATT+CGG | - | chr4_4:64860357-64860376 | Msa0695340:intron | 30.0% |
TATAAACGAATACCTGTTAC+CGG | + | chr4_4:64860391-64860410 | None:intergenic | 30.0% | |
AACAGGTATTCGTTTATACT+TGG | - | chr4_4:64860393-64860412 | Msa0695340:intron | 30.0% | |
!! | TGTGATCTTCTGAAATTTCT+AGG | + | chr4_4:64860480-64860499 | None:intergenic | 30.0% |
! | AAATCCTGATTTTCTAGATG+AGG | + | chr4_4:64860752-64860771 | None:intergenic | 30.0% |
! | TCAACTTTAGATTGTTTCTC+AGG | + | chr4_4:64860820-64860839 | None:intergenic | 30.0% |
ATAAACTCGGCAATTTATCA+TGG | - | chr4_4:64860841-64860860 | Msa0695340:CDS | 30.0% | |
! | GTCGACAAAATTAAGCATTT+TGG | + | chr4_4:64860893-64860912 | None:intergenic | 30.0% |
ACAATGAATTTGCCATATTC+AGG | + | chr4_4:64861172-64861191 | None:intergenic | 30.0% | |
!!! | CATTGTGCTGATTTTGTTTT+TGG | - | chr4_4:64861186-64861205 | Msa0695340:five_prime_UTR | 30.0% |
! | TTTTCAAAGGGTCATATACG+CGG | + | chr4_4:64857078-64857097 | None:intergenic | 35.0% |
! | TGATGGAGAGTCTTTTCAAA+GGG | + | chr4_4:64857090-64857109 | None:intergenic | 35.0% |
!! | ATGATGGAGAGTCTTTTCAA+AGG | + | chr4_4:64857091-64857110 | None:intergenic | 35.0% |
AGGTCATAACACTTCTATGA+TGG | + | chr4_4:64857107-64857126 | None:intergenic | 35.0% | |
! | ATGTAAGTTGAACTCTTCAC+GGG | + | chr4_4:64857246-64857265 | None:intergenic | 35.0% |
! | TTTTTGTGTGGCTTGAGTAA+TGG | - | chr4_4:64857276-64857295 | Msa0695340:CDS | 35.0% |
! | TTTTGTGTGGCTTGAGTAAT+GGG | - | chr4_4:64857277-64857296 | Msa0695340:CDS | 35.0% |
ACTAATAGCTATGGAAATGC+AGG | - | chr4_4:64857316-64857335 | Msa0695340:CDS | 35.0% | |
CTAATAGCTATGGAAATGCA+GGG | - | chr4_4:64857317-64857336 | Msa0695340:CDS | 35.0% | |
CTGATTAAAAGTGAGGACAT+CGG | + | chr4_4:64857560-64857579 | None:intergenic | 35.0% | |
CAATGACCTGATTAAAAGTG+AGG | + | chr4_4:64857567-64857586 | None:intergenic | 35.0% | |
GATTCATTAGATACGAATCG+TGG | - | chr4_4:64857900-64857919 | Msa0695340:intron | 35.0% | |
CCAAAGATTCAATACTTAGG+GGG | + | chr4_4:64858227-64858246 | None:intergenic | 35.0% | |
GCCAAAGATTCAATACTTAG+GGG | + | chr4_4:64858228-64858247 | None:intergenic | 35.0% | |
CTGCCAAAGATTCAATACTT+AGG | + | chr4_4:64858230-64858249 | None:intergenic | 35.0% | |
!!! | TATTTTTTTTTGGCCTTGGG+GGG | + | chr4_4:64858259-64858278 | None:intergenic | 35.0% |
!! | AATGGAAATTTTAGGGGTGA+TGG | - | chr4_4:64858497-64858516 | Msa0695340:CDS | 35.0% |
!! | ATGGAAATTTTAGGGGTGAT+GGG | - | chr4_4:64858498-64858517 | Msa0695340:CDS | 35.0% |
CAACAGACAACTATCTTTGT+CGG | - | chr4_4:64858585-64858604 | Msa0695340:intron | 35.0% | |
AACAGACAACTATCTTTGTC+GGG | - | chr4_4:64858586-64858605 | Msa0695340:intron | 35.0% | |
TGTCGAACATGCTATTGAAT+TGG | + | chr4_4:64858627-64858646 | None:intergenic | 35.0% | |
ACATGAAAAAATGTTGGTCC+AGG | - | chr4_4:64858644-64858663 | Msa0695340:intron | 35.0% | |
CATGAAAAAATGTTGGTCCA+GGG | - | chr4_4:64858645-64858664 | Msa0695340:intron | 35.0% | |
TGTTATGAACCATCCATCAA+AGG | + | chr4_4:64858695-64858714 | None:intergenic | 35.0% | |
! | AAGTTCTAATGTCAATCCTG+CGG | - | chr4_4:64859314-64859333 | Msa0695340:intron | 35.0% |
AGGATGATCATACAAAGCTT+AGG | - | chr4_4:64859461-64859480 | Msa0695340:CDS | 35.0% | |
GGATGATCATACAAAGCTTA+GGG | - | chr4_4:64859462-64859481 | Msa0695340:CDS | 35.0% | |
GATGATCATACAAAGCTTAG+GGG | - | chr4_4:64859463-64859482 | Msa0695340:CDS | 35.0% | |
TAGTAAGCATTTCTGTTCGA+AGG | - | chr4_4:64859685-64859704 | Msa0695340:intron | 35.0% | |
AGTAAGCATTTCTGTTCGAA+GGG | - | chr4_4:64859686-64859705 | Msa0695340:intron | 35.0% | |
TGATGAAGTTCTTCTATTGC+AGG | + | chr4_4:64859993-64860012 | None:intergenic | 35.0% | |
TACTTATGGTCGAATACAAG+AGG | + | chr4_4:64860068-64860087 | None:intergenic | 35.0% | |
ATAAGAGTGAACTGAAGTGA+CGG | + | chr4_4:64860107-64860126 | None:intergenic | 35.0% | |
TCACTTCAGTTCACTCTTAT+GGG | - | chr4_4:64860107-64860126 | Msa0695340:intron | 35.0% | |
TTGTAGGAATTAGTTAGCAC+TGG | - | chr4_4:64860314-64860333 | Msa0695340:intron | 35.0% | |
TCAACCTGCTTATTGAAACA+GGG | + | chr4_4:64860355-64860374 | None:intergenic | 35.0% | |
ATCAACCTGCTTATTGAAAC+AGG | + | chr4_4:64860356-64860375 | None:intergenic | 35.0% | |
!! | TTCAATAAGCAGGTTGATTC+GGG | - | chr4_4:64860358-64860377 | Msa0695340:intron | 35.0% |
GGTATTCGTTTATACTTGGA+AGG | - | chr4_4:64860397-64860416 | Msa0695340:intron | 35.0% | |
ACAATACAATAGCTCCAGAA+TGG | - | chr4_4:64860588-64860607 | Msa0695340:intron | 35.0% | |
GTCTACATCTATTGTGACAA+AGG | - | chr4_4:64860615-64860634 | Msa0695340:intron | 35.0% | |
! | TTGGTTTGAGGTTAAGCTAA+TGG | - | chr4_4:64860639-64860658 | Msa0695340:intron | 35.0% |
! | TGGTTTGAGGTTAAGCTAAT+GGG | - | chr4_4:64860640-64860659 | Msa0695340:intron | 35.0% |
CTTAAGACTTGGATACTCAA+CGG | - | chr4_4:64860681-64860700 | Msa0695340:CDS | 35.0% | |
GAAAATTCGCAGATCAGAAT+GGG | - | chr4_4:64860714-64860733 | Msa0695340:CDS | 35.0% | |
! | GATTTTCTAGATGAGGTTGA+AGG | + | chr4_4:64860745-64860764 | None:intergenic | 35.0% |
TCAACCTCATCTAGAAAATC+AGG | - | chr4_4:64860745-64860764 | Msa0695340:CDS | 35.0% | |
! | GCTTAATTTTGTCGACACAA+AGG | - | chr4_4:64860897-64860916 | Msa0695340:CDS | 35.0% |
! | TTTTGTCGACACAAAGGAAA+TGG | - | chr4_4:64860903-64860922 | Msa0695340:CDS | 35.0% |
TGAATTTGCCATATTCAGGT+CGG | + | chr4_4:64861168-64861187 | None:intergenic | 35.0% | |
TTTCAAAGGGTCATATACGC+GGG | + | chr4_4:64857077-64857096 | None:intergenic | 40.0% | |
CAACACCAGAAGGAAAAACA+AGG | + | chr4_4:64857477-64857496 | None:intergenic | 40.0% | |
CTGATAAAGGTGATTGTACC+AGG | - | chr4_4:64857527-64857546 | Msa0695340:CDS | 40.0% | |
!! | CGATGTCCTCACTTTTAATC+AGG | - | chr4_4:64857558-64857577 | Msa0695340:CDS | 40.0% |
! | AGTTATTGACTAGTGGCAGA+TGG | - | chr4_4:64857767-64857786 | Msa0695340:CDS | 40.0% |
!!! | GCAAGTTTTGGAAAGATAGG+GGG | + | chr4_4:64858168-64858187 | None:intergenic | 40.0% |
!!! | CGCAAGTTTTGGAAAGATAG+GGG | + | chr4_4:64858169-64858188 | None:intergenic | 40.0% |
!!! | CCGCAAGTTTTGGAAAGATA+GGG | + | chr4_4:64858170-64858189 | None:intergenic | 40.0% |
CCCTATCTTTCCAAAACTTG+CGG | - | chr4_4:64858167-64858186 | Msa0695340:CDS | 40.0% | |
!!! | ACCGCAAGTTTTGGAAAGAT+AGG | + | chr4_4:64858171-64858190 | None:intergenic | 40.0% |
!! | CCCCCTAAGTATTGAATCTT+TGG | - | chr4_4:64858224-64858243 | Msa0695340:CDS | 40.0% |
!! | ACCGCAAGTATTGGAAAGAT+AGG | - | chr4_4:64858396-64858415 | Msa0695340:CDS | 40.0% |
CCCTATCTTTCCAATACTTG+CGG | + | chr4_4:64858400-64858419 | None:intergenic | 40.0% | |
!! | CCGCAAGTATTGGAAAGATA+GGG | - | chr4_4:64858397-64858416 | Msa0695340:CDS | 40.0% |
!! | CGCAAGTATTGGAAAGATAG+GGG | - | chr4_4:64858398-64858417 | Msa0695340:CDS | 40.0% |
!! | GCAAGTATTGGAAAGATAGG+GGG | - | chr4_4:64858399-64858418 | Msa0695340:CDS | 40.0% |
GAACATGCTATTGAATTGGC+CGG | + | chr4_4:64858623-64858642 | None:intergenic | 40.0% | |
AAAAAGACGTACCTTGTTCG+TGG | - | chr4_4:64858767-64858786 | Msa0695340:intron | 40.0% | |
ACTCGGTCCAATCAACATAT+AGG | + | chr4_4:64859095-64859114 | None:intergenic | 40.0% | |
TATGGTACACACGTAGTTGT+TGG | - | chr4_4:64859165-64859184 | Msa0695340:intron | 40.0% | |
ATGGTACACACGTAGTTGTT+GGG | - | chr4_4:64859166-64859185 | Msa0695340:intron | 40.0% | |
AGCAATTTCTGCAGTTCAGT+CGG | + | chr4_4:64859252-64859271 | None:intergenic | 40.0% | |
! | AATTTTCCTGATATAGCCGC+AGG | + | chr4_4:64859333-64859352 | None:intergenic | 40.0% |
AGAATAGATGCAAAGTGCAC+AGG | + | chr4_4:64859609-64859628 | None:intergenic | 40.0% | |
AAGTTCGACTGTTCGAGTAT+AGG | + | chr4_4:64859640-64859659 | None:intergenic | 40.0% | |
GTAAGCATTTCTGTTCGAAG+GGG | - | chr4_4:64859687-64859706 | Msa0695340:intron | 40.0% | |
TATGCCAACCTTATAACCAG+TGG | - | chr4_4:64859721-64859740 | Msa0695340:intron | 40.0% | |
GACATTAGGAGACTGTGATA+TGG | + | chr4_4:64859754-64859773 | None:intergenic | 40.0% | |
TCATTACTGAATTCTGTCCC+AGG | - | chr4_4:64859801-64859820 | Msa0695340:intron | 40.0% | |
GTCACTTCAGTTCACTCTTA+TGG | - | chr4_4:64860106-64860125 | Msa0695340:intron | 40.0% | |
GGAAGAAGGAATTACCTTCA+CGG | + | chr4_4:64860153-64860172 | None:intergenic | 40.0% | |
!! | GAGTATTGGAACTTGGAAGA+AGG | + | chr4_4:64860167-64860186 | None:intergenic | 40.0% |
!! | GATGCTGAAGATGGATTGAT+AGG | + | chr4_4:64860438-64860457 | None:intergenic | 40.0% |
!! | TCTGAAATTTCTAGGACACC+TGG | + | chr4_4:64860472-64860491 | None:intergenic | 40.0% |
CTGGAGCTATTGTATTGTAC+AGG | + | chr4_4:64860586-64860605 | None:intergenic | 40.0% | |
AGATGTAGACTCATCCATTC+TGG | + | chr4_4:64860605-64860624 | None:intergenic | 40.0% | |
CATCTATTGTGACAAAGGCT+TGG | - | chr4_4:64860620-64860639 | Msa0695340:intron | 40.0% | |
CGAAAATTCGCAGATCAGAA+TGG | - | chr4_4:64860713-64860732 | Msa0695340:CDS | 40.0% | |
AACTCGGCAATTTATCATGG+TGG | - | chr4_4:64860844-64860863 | Msa0695340:CDS | 40.0% | |
GACACAAAGGAAATGGTAAG+AGG | - | chr4_4:64860910-64860929 | Msa0695340:CDS | 40.0% | |
GGTGCAAAGTTATGTGTAGA+AGG | - | chr4_4:64860967-64860986 | Msa0695340:five_prime_UTR | 40.0% | |
GCAAAGTTATGTGTAGAAGG+TGG | - | chr4_4:64860970-64860989 | Msa0695340:five_prime_UTR | 40.0% | |
GGGTGGAGAAGTTAAAAGGA+CGG | + | chr4_4:64857014-64857033 | None:intergenic | 45.0% | |
TTGGGGGTGGAGAAGTTAAA+AGG | + | chr4_4:64857018-64857037 | None:intergenic | 45.0% | |
TAGCTATGGAAATGCAGGGT+TGG | - | chr4_4:64857321-64857340 | Msa0695340:CDS | 45.0% | |
GCTTTCTCAGCTGCTAATTG+AGG | + | chr4_4:64857349-64857368 | None:intergenic | 45.0% | |
GAGAAAGCTGTGAGTGTGAT+TGG | - | chr4_4:64857361-64857380 | Msa0695340:CDS | 45.0% | |
GATTCTCTGCTTGCAAGTCA+AGG | - | chr4_4:64857413-64857432 | Msa0695340:CDS | 45.0% | |
!!! | AGGGACCTTGTTTTTCCTTC+TGG | - | chr4_4:64857469-64857488 | Msa0695340:CDS | 45.0% |
TTAGGGACAACAACACCAGA+AGG | + | chr4_4:64857487-64857506 | None:intergenic | 45.0% | |
CTACGTACTACGGTACTAGA+TGG | + | chr4_4:64857945-64857964 | None:intergenic | 45.0% | |
TTGCAATTCTTGCCTTGCAC+AGG | - | chr4_4:64858014-64858033 | Msa0695340:intron | 45.0% | |
TGCAATTCTTGCCTTGCACA+GGG | - | chr4_4:64858015-64858034 | Msa0695340:intron | 45.0% | |
AACATCATTCACCCTGTGCA+AGG | + | chr4_4:64858029-64858048 | None:intergenic | 45.0% | |
TGACACATGGCACCTCATTT+AGG | - | chr4_4:64858287-64858306 | Msa0695340:intron | 45.0% | |
GACACATGGCACCTCATTTA+GGG | - | chr4_4:64858288-64858307 | Msa0695340:intron | 45.0% | |
!!! | ATTTTAGGGGTGATGGGATG+TGG | - | chr4_4:64858504-64858523 | Msa0695340:CDS | 45.0% |
TTGTCGGGAAAGATTCCATC+CGG | - | chr4_4:64858601-64858620 | Msa0695340:intron | 45.0% | |
ATGCTATTGAATTGGCCGGA+TGG | + | chr4_4:64858619-64858638 | None:intergenic | 45.0% | |
ATCAAAGGCAAGGCTCTTAG+TGG | + | chr4_4:64858680-64858699 | None:intergenic | 45.0% | |
ACTAAGAGCCTTGCCTTTGA+TGG | - | chr4_4:64858679-64858698 | Msa0695340:intron | 45.0% | |
TGAACCATCCATCAAAGGCA+AGG | + | chr4_4:64858690-64858709 | None:intergenic | 45.0% | |
TGGTACACACGTAGTTGTTG+GGG | - | chr4_4:64859167-64859186 | Msa0695340:intron | 45.0% | |
GTAGTTGTTGGGGTGAAGAT+GGG | - | chr4_4:64859177-64859196 | Msa0695340:intron | 45.0% | |
AATTTCTGCAGTTCAGTCGG+CGG | + | chr4_4:64859249-64859268 | None:intergenic | 45.0% | |
TTAAGCAATTAGCCGACGAG+AGG | - | chr4_4:64859271-64859290 | Msa0695340:intron | 45.0% | |
ATCCACAGAAAACCTCTCGT+CGG | + | chr4_4:64859286-64859305 | None:intergenic | 45.0% | |
! | TACAATTGGCCTGCCAACAA+GGG | + | chr4_4:64859512-64859531 | None:intergenic | 45.0% |
! | TTACAATTGGCCTGCCAACA+AGG | + | chr4_4:64859513-64859532 | None:intergenic | 45.0% |
! | AGAGCCACTGGTTATAAGGT+TGG | + | chr4_4:64859728-64859747 | None:intergenic | 45.0% |
! | GTTGAGAGCCACTGGTTATA+AGG | + | chr4_4:64859732-64859751 | None:intergenic | 45.0% |
CTGAATTCTGTCCCAGGAAA+TGG | - | chr4_4:64859807-64859826 | Msa0695340:intron | 45.0% | |
CAAAGGAAAACCAAAGTCGC+AGG | + | chr4_4:64859879-64859898 | None:intergenic | 45.0% | |
AGTTTCAGTTGCCACGACAA+TGG | - | chr4_4:64860021-64860040 | Msa0695340:intron | 45.0% | |
GTTTCAGTTGCCACGACAAT+GGG | - | chr4_4:64860022-64860041 | Msa0695340:intron | 45.0% | |
AGAGGCAGATCACCATACAT+CGG | + | chr4_4:64860050-64860069 | None:intergenic | 45.0% | |
TCGACCCTGTTTCAATAAGC+AGG | - | chr4_4:64860348-64860367 | Msa0695340:intron | 45.0% | |
!! | GCTGAAGATGGATTGATAGG+TGG | + | chr4_4:64860435-64860454 | None:intergenic | 45.0% |
! | CCTCTGAAAGATGCTGAAGA+TGG | + | chr4_4:64860447-64860466 | None:intergenic | 45.0% |
CCATCTTCAGCATCTTTCAG+AGG | - | chr4_4:64860444-64860463 | Msa0695340:intron | 45.0% | |
GATCCTATTGACGAACCAGA+TGG | - | chr4_4:64860505-64860524 | Msa0695340:intron | 45.0% | |
GAAAACATGCTCCACTTCAC+TGG | + | chr4_4:64860547-64860566 | None:intergenic | 45.0% | |
! | TGTGACAAAGGCTTGGTTTG+AGG | - | chr4_4:64860627-64860646 | Msa0695340:intron | 45.0% |
ATTCGCAGATCAGAATGGGA+TGG | - | chr4_4:64860718-64860737 | Msa0695340:CDS | 45.0% | |
ATGAGTGCAAAGCTTAGCCA+AGG | - | chr4_4:64860784-64860803 | Msa0695340:CDS | 45.0% | |
TCTCAGGTGAATGCAATCCT+TGG | + | chr4_4:64860804-64860823 | None:intergenic | 45.0% | |
AGAGGATCCACCAGGATATT+GGG | - | chr4_4:64860936-64860955 | Msa0695340:exon | 45.0% | |
AGGTGGCAGAATCTCAATCA+AGG | - | chr4_4:64860987-64861006 | Msa0695340:five_prime_UTR | 45.0% | |
!!! | CATTTTTTTTTATTTTTTTT+TGG | + | chr4_4:64858269-64858288 | None:intergenic | 5.0% |
! | GCTGTGAGTGTGATTGGTCA+AGG | - | chr4_4:64857367-64857386 | Msa0695340:CDS | 50.0% |
CTGATGTGGCACCCTAAATG+AGG | + | chr4_4:64858302-64858321 | None:intergenic | 50.0% | |
AGAGCCTTGCCTTTGATGGA+TGG | - | chr4_4:64858683-64858702 | Msa0695340:intron | 50.0% | |
CGTAGTTGTTGGGGTGAAGA+TGG | - | chr4_4:64859176-64859195 | Msa0695340:intron | 50.0% | |
GTCAATCCTGCGGCTATATC+AGG | - | chr4_4:64859324-64859343 | Msa0695340:intron | 50.0% | |
AACAAACCTCCGTCCCTTGT+TGG | - | chr4_4:64859496-64859515 | Msa0695340:CDS | 50.0% | |
AGCATTTCTGTTCGAAGGGG+AGG | - | chr4_4:64859690-64859709 | Msa0695340:intron | 50.0% | |
GTGATATGGTTGAGAGCCAC+TGG | + | chr4_4:64859740-64859759 | None:intergenic | 50.0% | |
!! | AGCAGGTTGATTCGGGAAAC+CGG | - | chr4_4:64860365-64860384 | Msa0695340:intron | 50.0% |
AACGAATACCTGTTACCGGC+CGG | + | chr4_4:64860387-64860406 | None:intergenic | 50.0% | |
CAGCATCTTTCAGAGGTTCC+AGG | - | chr4_4:64860451-64860470 | Msa0695340:intron | 50.0% | |
!! | TCACTGGTTCGTAGTAGCCT+CGG | + | chr4_4:64860531-64860550 | None:intergenic | 50.0% |
GCTACTACGAACCAGTGAAG+TGG | - | chr4_4:64860533-64860552 | Msa0695340:intron | 50.0% | |
!! | AGCATTTTGGGAGCCCTTCT+TGG | + | chr4_4:64860880-64860899 | None:intergenic | 50.0% |
GGAAATGGTAAGAGGTCCAG+AGG | - | chr4_4:64860918-64860937 | Msa0695340:CDS | 50.0% | |
! | CAATATCCTGGTGGATCCTC+TGG | + | chr4_4:64860937-64860956 | None:intergenic | 50.0% |
CAGAGGATCCACCAGGATAT+TGG | - | chr4_4:64860935-64860954 | Msa0695340:exon | 50.0% | |
GTGACAACCCAATATCCTGG+TGG | + | chr4_4:64860946-64860965 | None:intergenic | 50.0% | |
CCAGTGACAACCCAATATCC+TGG | + | chr4_4:64860949-64860968 | None:intergenic | 50.0% | |
! | CCAGGATATTGGGTTGTCAC+TGG | - | chr4_4:64860946-64860965 | Msa0695340:five_prime_UTR | 50.0% |
GGCGTAAACCGACCTGAATA+TGG | - | chr4_4:64861157-64861176 | Msa0695340:five_prime_UTR | 50.0% | |
GAGGACATCGGATCGAAACC+TGG | + | chr4_4:64857548-64857567 | None:intergenic | 55.0% | |
! | GGGGCTGTAACCGCAAGTTT+TGG | + | chr4_4:64858180-64858199 | None:intergenic | 55.0% |
! | TTAGGGTGCCACATCAGCGT+TGG | - | chr4_4:64858305-64858324 | Msa0695340:intron | 55.0% |
! | TAGGGTGCCACATCAGCGTT+GGG | - | chr4_4:64858306-64858325 | Msa0695340:intron | 55.0% |
GGGGCTGTAACCGCAAGTAT+TGG | - | chr4_4:64858387-64858406 | Msa0695340:CDS | 55.0% | |
CTTAGTGGAAGCTGCATCCC+TGG | + | chr4_4:64858665-64858684 | None:intergenic | 55.0% | |
CTTACTCGGCAAGAGCAGCA+GGG | + | chr4_4:64858795-64858814 | None:intergenic | 55.0% | |
ACTTACTCGGCAAGAGCAGC+AGG | + | chr4_4:64858796-64858815 | None:intergenic | 55.0% | |
GTTGTTGGGGTGAAGATGGG+AGG | - | chr4_4:64859180-64859199 | Msa0695340:intron | 55.0% | |
! | AGCCGACGAGAGGTTTTCTG+TGG | - | chr4_4:64859281-64859300 | Msa0695340:intron | 55.0% |
CAAAGCTTAGGGGACTGCAC+AGG | - | chr4_4:64859473-64859492 | Msa0695340:CDS | 55.0% | |
! | ATTGGCCTGCCAACAAGGGA+CGG | + | chr4_4:64859508-64859527 | None:intergenic | 55.0% |
TGAGTAGGCACCTGCGACTT+TGG | - | chr4_4:64859866-64859885 | Msa0695340:intron | 55.0% | |
! | TACATCGGTGCCCATTGTCG+TGG | + | chr4_4:64860035-64860054 | None:intergenic | 55.0% |
!! | CGACAATGGGCACCGATGTA+TGG | - | chr4_4:64860035-64860054 | Msa0695340:intron | 55.0% |
! | CGGCCATCTGGTTCGTCAAT+AGG | + | chr4_4:64860511-64860530 | None:intergenic | 55.0% |
ATTGACGAACCAGATGGCCG+AGG | - | chr4_4:64860511-64860530 | Msa0695340:intron | 55.0% | |
TGGTCCACCTGTGCCAAGAA+GGG | - | chr4_4:64860864-64860883 | Msa0695340:CDS | 55.0% | |
!! | TTGGCAGTTTTGGCCCCCCA+AGG | - | chr4_4:64858243-64858262 | Msa0695340:intron | 60.0% |
! | AGGGTGCCACATCAGCGTTG+GGG | - | chr4_4:64858307-64858326 | Msa0695340:intron | 60.0% |
TTTGGCCCCCAACGCTGATG+TGG | + | chr4_4:64858316-64858335 | None:intergenic | 60.0% | |
GCAGCAGGGTTCCACGAACA+AGG | + | chr4_4:64858781-64858800 | None:intergenic | 60.0% | |
AACCTCCGTCCCTTGTTGGC+AGG | - | chr4_4:64859500-64859519 | Msa0695340:CDS | 60.0% | |
!! | GGTTGATTCGGGAAACCGGC+CGG | - | chr4_4:64860369-64860388 | Msa0695340:intron | 60.0% |
TCGTAGTAGCCTCGGCCATC+TGG | + | chr4_4:64860523-64860542 | None:intergenic | 60.0% | |
GTGGTCCACCTGTGCCAAGA+AGG | - | chr4_4:64860863-64860882 | Msa0695340:CDS | 60.0% | |
TTGGGAGCCCTTCTTGGCAC+AGG | + | chr4_4:64860874-64860893 | None:intergenic | 60.0% | |
AGAGGTCCAGAGGATCCACC+AGG | - | chr4_4:64860928-64860947 | Msa0695340:exon | 60.0% | |
! | GGGTGCCACATCAGCGTTGG+GGG | - | chr4_4:64858308-64858327 | Msa0695340:intron | 65.0% |
TCGGGAAACCGGCCGGTAAC+AGG | - | chr4_4:64860376-64860395 | Msa0695340:intron | 65.0% | |
GGAGCCCTTCTTGGCACAGG+TGG | + | chr4_4:64860871-64860890 | None:intergenic | 65.0% | |
GGCCTGCCAACAAGGGACGG+AGG | + | chr4_4:64859505-64859524 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_4 | gene | 64856982 | 64861255 | 64856982 | ID=Msa0695340;Name=Msa0695340 |
chr4_4 | mRNA | 64856982 | 64861255 | 64856982 | ID=Msa0695340-mRNA-1;Parent=Msa0695340;Name=Msa0695340-mRNA-1;_AED=0.07;_eAED=0.07;_QI=313|1|1|1|1|1|7|199|620 |
chr4_4 | exon | 64856982 | 64857867 | 64856982 | ID=Msa0695340-mRNA-1:exon:18629;Parent=Msa0695340-mRNA-1 |
chr4_4 | exon | 64858080 | 64858252 | 64858080 | ID=Msa0695340-mRNA-1:exon:18628;Parent=Msa0695340-mRNA-1 |
chr4_4 | exon | 64858373 | 64858556 | 64858373 | ID=Msa0695340-mRNA-1:exon:18627;Parent=Msa0695340-mRNA-1 |
chr4_4 | exon | 64858685 | 64858774 | 64858685 | ID=Msa0695340-mRNA-1:exon:18626;Parent=Msa0695340-mRNA-1 |
chr4_4 | exon | 64858881 | 64859085 | 64858881 | ID=Msa0695340-mRNA-1:exon:18625;Parent=Msa0695340-mRNA-1 |
chr4_4 | exon | 64859428 | 64859666 | 64859428 | ID=Msa0695340-mRNA-1:exon:18624;Parent=Msa0695340-mRNA-1 |
chr4_4 | exon | 64860658 | 64861255 | 64860658 | ID=Msa0695340-mRNA-1:exon:18623;Parent=Msa0695340-mRNA-1 |
chr4_4 | five_prime_UTR | 64860943 | 64861255 | 64860943 | ID=Msa0695340-mRNA-1:five_prime_utr;Parent=Msa0695340-mRNA-1 |
chr4_4 | CDS | 64860658 | 64860942 | 64860658 | ID=Msa0695340-mRNA-1:cds;Parent=Msa0695340-mRNA-1 |
chr4_4 | CDS | 64859428 | 64859666 | 64859428 | ID=Msa0695340-mRNA-1:cds;Parent=Msa0695340-mRNA-1 |
chr4_4 | CDS | 64858881 | 64859085 | 64858881 | ID=Msa0695340-mRNA-1:cds;Parent=Msa0695340-mRNA-1 |
chr4_4 | CDS | 64858685 | 64858774 | 64858685 | ID=Msa0695340-mRNA-1:cds;Parent=Msa0695340-mRNA-1 |
chr4_4 | CDS | 64858373 | 64858556 | 64858373 | ID=Msa0695340-mRNA-1:cds;Parent=Msa0695340-mRNA-1 |
chr4_4 | CDS | 64858080 | 64858252 | 64858080 | ID=Msa0695340-mRNA-1:cds;Parent=Msa0695340-mRNA-1 |
chr4_4 | CDS | 64857181 | 64857867 | 64857181 | ID=Msa0695340-mRNA-1:cds;Parent=Msa0695340-mRNA-1 |
chr4_4 | three_prime_UTR | 64856982 | 64857180 | 64856982 | ID=Msa0695340-mRNA-1:three_prime_utr;Parent=Msa0695340-mRNA-1 |
Gene Sequence |
Protein sequence |