Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0700160 | KEH20550.1 | 88.000 | 50 | 6 | 0 | 3 | 52 | 62 | 111 | 4.37e-24 | 97.4 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0700160 | A0A072U3Y4 | 88.000 | 50 | 6 | 0 | 3 | 52 | 62 | 111 | 2.08e-24 | 97.4 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0656360 | Msa0700160 | 0.997237 | 4.223596e-239 | -8.615850e-47 |
Msa0700160 | Msa0968590 | 0.808166 | 3.539560e-50 | -8.615850e-47 |
Msa0385580 | Msa0700160 | 0.814542 | 1.461452e-51 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 8 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGTTTCAGGTTTCTTCTTAT+TGG | 0.157724 | 4_4:+71050134 | None:intergenic |
TCAAAACTTCAAAATGTTTC+AGG | 0.190026 | 4_4:+71050120 | None:intergenic |
TTATTGGAGCTTTGAAGATA+TGG | 0.315067 | 4_4:+71050150 | None:intergenic |
ATCTTACTTCATCTTGTAGT+AGG | 0.421868 | 4_4:+71050033 | None:intergenic |
ACAAGCAACAATTACTTCCA+CGG | 0.542293 | 4_4:-71050209 | Msa0700160:intron |
ATTACTTCCACGGAACGAGC+TGG | 0.555290 | 4_4:-71050199 | Msa0700160:CDS |
AGCTTTGAAGATATGGACGT+TGG | 0.560270 | 4_4:+71050157 | None:intergenic |
TCAATATCCAGCTCGTTCCG+TGG | 0.603928 | 4_4:+71050192 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATATAAAATCAACAAAATAA+AGG | + | chr4_4:71050152-71050171 | None:intergenic | 10.0% |
!! | ATATAAAATCAACAAAATAA+AGG | + | chr4_4:71050152-71050171 | None:intergenic | 10.0% |
!! | CAAAATAAAGGAATTATAAA+TGG | + | chr4_4:71050140-71050159 | None:intergenic | 15.0% |
!! | TCAAAACATATTAAATTCTA+GGG | + | chr4_4:71050580-71050599 | None:intergenic | 15.0% |
!! | CAAAATAAAGGAATTATAAA+TGG | + | chr4_4:71050140-71050159 | None:intergenic | 15.0% |
!! | TCAAAACATATTAAATTCTA+GGG | + | chr4_4:71050580-71050599 | None:intergenic | 15.0% |
!!! | TTTTTTGGTAGTTATATCAA+TGG | - | chr4_4:71050041-71050060 | Msa0700160:CDS | 20.0% |
!! | AACTGATTAATTGTATAAAC+AGG | + | chr4_4:71050184-71050203 | None:intergenic | 20.0% |
!! | TGTTCCTTTAATATATTACA+GGG | + | chr4_4:71050207-71050226 | None:intergenic | 20.0% |
!! | ATGTTCCTTTAATATATTAC+AGG | + | chr4_4:71050208-71050227 | None:intergenic | 20.0% |
!! | ATTAGTTAGAGAAACAAATA+AGG | - | chr4_4:71050472-71050491 | Msa0700160:intron | 20.0% |
!! | TTAGTTAGAGAAACAAATAA+GGG | - | chr4_4:71050473-71050492 | Msa0700160:intron | 20.0% |
!! | GTCAAAACATATTAAATTCT+AGG | + | chr4_4:71050581-71050600 | None:intergenic | 20.0% |
!! | ATATAACATGATTATCATCT+AGG | + | chr4_4:71050853-71050872 | None:intergenic | 20.0% |
!! | ATGGAAATGTTATATTAGAA+TGG | + | chr4_4:71051013-71051032 | None:intergenic | 20.0% |
!! | ACATAAAAAATTCCCTAATA+CGG | - | chr4_4:71051037-71051056 | Msa0700160:intron | 20.0% |
!!! | TTTTTTGGTAGTTATATCAA+TGG | - | chr4_4:71050041-71050060 | Msa0700160:CDS | 20.0% |
!! | AACTGATTAATTGTATAAAC+AGG | + | chr4_4:71050184-71050203 | None:intergenic | 20.0% |
!! | TGTTCCTTTAATATATTACA+GGG | + | chr4_4:71050207-71050226 | None:intergenic | 20.0% |
!! | ATGTTCCTTTAATATATTAC+AGG | + | chr4_4:71050208-71050227 | None:intergenic | 20.0% |
!! | ATTAGTTAGAGAAACAAATA+AGG | - | chr4_4:71050472-71050491 | Msa0700160:intron | 20.0% |
!! | TTAGTTAGAGAAACAAATAA+GGG | - | chr4_4:71050473-71050492 | Msa0700160:intron | 20.0% |
!! | GTCAAAACATATTAAATTCT+AGG | + | chr4_4:71050581-71050600 | None:intergenic | 20.0% |
!! | ATATAACATGATTATCATCT+AGG | + | chr4_4:71050853-71050872 | None:intergenic | 20.0% |
!! | ATGGAAATGTTATATTAGAA+TGG | + | chr4_4:71051013-71051032 | None:intergenic | 20.0% |
!! | ACATAAAAAATTCCCTAATA+CGG | - | chr4_4:71051037-71051056 | Msa0700160:intron | 20.0% |
! | AGTTATATCAATGGTGTATT+TGG | - | chr4_4:71050050-71050069 | Msa0700160:CDS | 25.0% |
! | AAAAAAACGATGCGTTAATT+TGG | - | chr4_4:71050103-71050122 | Msa0700160:CDS | 25.0% |
! | AGTTCCCTGTAATATATTAA+AGG | - | chr4_4:71050200-71050219 | Msa0700160:CDS | 25.0% |
! | AAATCGACAAAAATTACACT+GGG | + | chr4_4:71050328-71050347 | None:intergenic | 25.0% |
!!! | AGTGTTCATTTTTAAACTAG+AGG | - | chr4_4:71050501-71050520 | Msa0700160:intron | 25.0% |
!!! | GTGTTCATTTTTAAACTAGA+GGG | - | chr4_4:71050502-71050521 | Msa0700160:intron | 25.0% |
!!! | TGTTCATTTTTAAACTAGAG+GGG | - | chr4_4:71050503-71050522 | Msa0700160:intron | 25.0% |
!! | CATTTTCAATGAATTGACAT+GGG | - | chr4_4:71050736-71050755 | Msa0700160:intron | 25.0% |
! | TGATCTGTCTCTTAATATTT+CGG | + | chr4_4:71050879-71050898 | None:intergenic | 25.0% |
!!! | TGTACTGATTTCTAAGTTTA+GGG | + | chr4_4:71050904-71050923 | None:intergenic | 25.0% |
!!! | TTGTACTGATTTCTAAGTTT+AGG | + | chr4_4:71050905-71050924 | None:intergenic | 25.0% |
!! | TATATTAGAATGGCATGTTT+TGG | + | chr4_4:71051003-71051022 | None:intergenic | 25.0% |
! | CTTGAATTATTACCGTATTA+GGG | + | chr4_4:71051052-71051071 | None:intergenic | 25.0% |
! | TCAAAACTTCAAAATGTTTC+AGG | + | chr4_4:71051169-71051188 | None:intergenic | 25.0% |
! | AGTTATATCAATGGTGTATT+TGG | - | chr4_4:71050050-71050069 | Msa0700160:CDS | 25.0% |
! | AAAAAAACGATGCGTTAATT+TGG | - | chr4_4:71050103-71050122 | Msa0700160:CDS | 25.0% |
! | AGTTCCCTGTAATATATTAA+AGG | - | chr4_4:71050200-71050219 | Msa0700160:CDS | 25.0% |
! | AAATCGACAAAAATTACACT+GGG | + | chr4_4:71050328-71050347 | None:intergenic | 25.0% |
!!! | AGTGTTCATTTTTAAACTAG+AGG | - | chr4_4:71050501-71050520 | Msa0700160:intron | 25.0% |
!!! | GTGTTCATTTTTAAACTAGA+GGG | - | chr4_4:71050502-71050521 | Msa0700160:intron | 25.0% |
!!! | TGTTCATTTTTAAACTAGAG+GGG | - | chr4_4:71050503-71050522 | Msa0700160:intron | 25.0% |
!! | CATTTTCAATGAATTGACAT+GGG | - | chr4_4:71050736-71050755 | Msa0700160:intron | 25.0% |
! | TGATCTGTCTCTTAATATTT+CGG | + | chr4_4:71050879-71050898 | None:intergenic | 25.0% |
!!! | TGTACTGATTTCTAAGTTTA+GGG | + | chr4_4:71050904-71050923 | None:intergenic | 25.0% |
!!! | TTGTACTGATTTCTAAGTTT+AGG | + | chr4_4:71050905-71050924 | None:intergenic | 25.0% |
!! | TATATTAGAATGGCATGTTT+TGG | + | chr4_4:71051003-71051022 | None:intergenic | 25.0% |
! | CTTGAATTATTACCGTATTA+GGG | + | chr4_4:71051052-71051071 | None:intergenic | 25.0% |
! | TCAAAACTTCAAAATGTTTC+AGG | + | chr4_4:71051169-71051188 | None:intergenic | 25.0% |
!!! | TCGTTTTTTTTTTTGTGCGT+TGG | + | chr4_4:71050093-71050112 | None:intergenic | 30.0% |
AATCGACAAAAATTACACTG+GGG | + | chr4_4:71050327-71050346 | None:intergenic | 30.0% | |
CAAATCGACAAAAATTACAC+TGG | + | chr4_4:71050329-71050348 | None:intergenic | 30.0% | |
AGTTAACTTCTTTGCTACAA+TGG | + | chr4_4:71050416-71050435 | None:intergenic | 30.0% | |
!! | GTTCATTTTTAAACTAGAGG+GGG | - | chr4_4:71050504-71050523 | Msa0700160:intron | 30.0% |
!! | TTCATTTTTAAACTAGAGGG+GGG | - | chr4_4:71050505-71050524 | Msa0700160:intron | 30.0% |
ACTTAAACGCATTTCATAAG+AGG | + | chr4_4:71050626-71050645 | None:intergenic | 30.0% | |
CCATGTCAATTCATTGAAAA+TGG | + | chr4_4:71050738-71050757 | None:intergenic | 30.0% | |
! | CCATTTTCAATGAATTGACA+TGG | - | chr4_4:71050735-71050754 | Msa0700160:intron | 30.0% |
GATCTGTCTCTTAATATTTC+GGG | + | chr4_4:71050878-71050897 | None:intergenic | 30.0% | |
AAACAACTGTGTAGATTGTT+GGG | + | chr4_4:71050941-71050960 | None:intergenic | 30.0% | |
AAAACAACTGTGTAGATTGT+TGG | + | chr4_4:71050942-71050961 | None:intergenic | 30.0% | |
CCTTGAATTATTACCGTATT+AGG | + | chr4_4:71051053-71051072 | None:intergenic | 30.0% | |
CCTAATACGGTAATAATTCA+AGG | - | chr4_4:71051050-71051069 | Msa0700160:intron | 30.0% | |
!! | TTATTGGAGCTTTGAAGATA+TGG | + | chr4_4:71051139-71051158 | None:intergenic | 30.0% |
!! | TGTTTCAGGTTTCTTCTTAT+TGG | + | chr4_4:71051155-71051174 | None:intergenic | 30.0% |
ATCTTACTTCATCTTGTAGT+AGG | + | chr4_4:71051256-71051275 | None:intergenic | 30.0% | |
!!! | TCGTTTTTTTTTTTGTGCGT+TGG | + | chr4_4:71050093-71050112 | None:intergenic | 30.0% |
AATCGACAAAAATTACACTG+GGG | + | chr4_4:71050327-71050346 | None:intergenic | 30.0% | |
CAAATCGACAAAAATTACAC+TGG | + | chr4_4:71050329-71050348 | None:intergenic | 30.0% | |
AGTTAACTTCTTTGCTACAA+TGG | + | chr4_4:71050416-71050435 | None:intergenic | 30.0% | |
!! | GTTCATTTTTAAACTAGAGG+GGG | - | chr4_4:71050504-71050523 | Msa0700160:intron | 30.0% |
!! | TTCATTTTTAAACTAGAGGG+GGG | - | chr4_4:71050505-71050524 | Msa0700160:intron | 30.0% |
ACTTAAACGCATTTCATAAG+AGG | + | chr4_4:71050626-71050645 | None:intergenic | 30.0% | |
CCATGTCAATTCATTGAAAA+TGG | + | chr4_4:71050738-71050757 | None:intergenic | 30.0% | |
! | CCATTTTCAATGAATTGACA+TGG | - | chr4_4:71050735-71050754 | Msa0700160:intron | 30.0% |
GATCTGTCTCTTAATATTTC+GGG | + | chr4_4:71050878-71050897 | None:intergenic | 30.0% | |
AAACAACTGTGTAGATTGTT+GGG | + | chr4_4:71050941-71050960 | None:intergenic | 30.0% | |
AAAACAACTGTGTAGATTGT+TGG | + | chr4_4:71050942-71050961 | None:intergenic | 30.0% | |
CCTTGAATTATTACCGTATT+AGG | + | chr4_4:71051053-71051072 | None:intergenic | 30.0% | |
CCTAATACGGTAATAATTCA+AGG | - | chr4_4:71051050-71051069 | Msa0700160:intron | 30.0% | |
!! | TTATTGGAGCTTTGAAGATA+TGG | + | chr4_4:71051139-71051158 | None:intergenic | 30.0% |
!! | TGTTTCAGGTTTCTTCTTAT+TGG | + | chr4_4:71051155-71051174 | None:intergenic | 30.0% |
ATCTTACTTCATCTTGTAGT+AGG | + | chr4_4:71051256-71051275 | None:intergenic | 30.0% | |
ATCAATGGTGTATTTGGTAG+CGG | - | chr4_4:71050056-71050075 | Msa0700160:CDS | 35.0% | |
! | GATACGTTGTTTGAGTTCTA+TGG | - | chr4_4:71050267-71050286 | Msa0700160:intron | 35.0% |
!!! | TTTTGTCGATTTGCAAGAGA+TGG | - | chr4_4:71050336-71050355 | Msa0700160:intron | 35.0% |
!! | TTTGTCGATTTGCAAGAGAT+GGG | - | chr4_4:71050337-71050356 | Msa0700160:intron | 35.0% |
ACAGTGTTAACTTACAAGAG+AGG | - | chr4_4:71050444-71050463 | Msa0700160:intron | 35.0% | |
GTTAGAGAAACAAATAAGGG+AGG | - | chr4_4:71050476-71050495 | Msa0700160:intron | 35.0% | |
! | TTTAAGTTTGCAGTTAGCTG+AGG | - | chr4_4:71050639-71050658 | Msa0700160:intron | 35.0% |
!! | ATTAGAATGGCATGTTTTGG+AGG | + | chr4_4:71051000-71051019 | None:intergenic | 35.0% |
!!! | GGGAATTTTTTATGTCGTGA+TGG | + | chr4_4:71051032-71051051 | None:intergenic | 35.0% |
ACAAGCAACAATTACTTCCA+CGG | - | chr4_4:71051077-71051096 | Msa0700160:intron | 35.0% | |
! | GACATTTTTGTTACACACAC+AGG | - | chr4_4:71051211-71051230 | Msa0700160:intron | 35.0% |
ATCAATGGTGTATTTGGTAG+CGG | - | chr4_4:71050056-71050075 | Msa0700160:CDS | 35.0% | |
! | GATACGTTGTTTGAGTTCTA+TGG | - | chr4_4:71050267-71050286 | Msa0700160:intron | 35.0% |
!!! | TTTTGTCGATTTGCAAGAGA+TGG | - | chr4_4:71050336-71050355 | Msa0700160:intron | 35.0% |
!! | TTTGTCGATTTGCAAGAGAT+GGG | - | chr4_4:71050337-71050356 | Msa0700160:intron | 35.0% |
ACAGTGTTAACTTACAAGAG+AGG | - | chr4_4:71050444-71050463 | Msa0700160:intron | 35.0% | |
GTTAGAGAAACAAATAAGGG+AGG | - | chr4_4:71050476-71050495 | Msa0700160:intron | 35.0% | |
! | TTTAAGTTTGCAGTTAGCTG+AGG | - | chr4_4:71050639-71050658 | Msa0700160:intron | 35.0% |
!! | ATTAGAATGGCATGTTTTGG+AGG | + | chr4_4:71051000-71051019 | None:intergenic | 35.0% |
!!! | GGGAATTTTTTATGTCGTGA+TGG | + | chr4_4:71051032-71051051 | None:intergenic | 35.0% |
ACAAGCAACAATTACTTCCA+CGG | - | chr4_4:71051077-71051096 | Msa0700160:intron | 35.0% | |
! | GACATTTTTGTTACACACAC+AGG | - | chr4_4:71051211-71051230 | Msa0700160:intron | 35.0% |
!! | TTGTCGATTTGCAAGAGATG+GGG | - | chr4_4:71050338-71050357 | Msa0700160:intron | 40.0% |
GGATACCAATTTCACATGCA+AGG | - | chr4_4:71050359-71050378 | Msa0700160:intron | 40.0% | |
TGCATCCTTGCATGTGAAAT+TGG | + | chr4_4:71050367-71050386 | None:intergenic | 40.0% | |
TGTTGTCTAAGGAAGTCTCA+GGG | - | chr4_4:71050534-71050553 | Msa0700160:intron | 40.0% | |
TTTCATAAGAGGCAGGCAAA+GGG | + | chr4_4:71050615-71050634 | None:intergenic | 40.0% | |
ATTTCATAAGAGGCAGGCAA+AGG | + | chr4_4:71050616-71050635 | None:intergenic | 40.0% | |
AAACGCATTTCATAAGAGGC+AGG | + | chr4_4:71050622-71050641 | None:intergenic | 40.0% | |
! | CACTGTTCTGAGCATGATTT+AGG | + | chr4_4:71050799-71050818 | None:intergenic | 40.0% |
!! | AGCTTTGAAGATATGGACGT+TGG | + | chr4_4:71051132-71051151 | None:intergenic | 40.0% |
!! | TTGTCGATTTGCAAGAGATG+GGG | - | chr4_4:71050338-71050357 | Msa0700160:intron | 40.0% |
GGATACCAATTTCACATGCA+AGG | - | chr4_4:71050359-71050378 | Msa0700160:intron | 40.0% | |
TGCATCCTTGCATGTGAAAT+TGG | + | chr4_4:71050367-71050386 | None:intergenic | 40.0% | |
TGTTGTCTAAGGAAGTCTCA+GGG | - | chr4_4:71050534-71050553 | Msa0700160:intron | 40.0% | |
TTTCATAAGAGGCAGGCAAA+GGG | + | chr4_4:71050615-71050634 | None:intergenic | 40.0% | |
ATTTCATAAGAGGCAGGCAA+AGG | + | chr4_4:71050616-71050635 | None:intergenic | 40.0% | |
AAACGCATTTCATAAGAGGC+AGG | + | chr4_4:71050622-71050641 | None:intergenic | 40.0% | |
! | CACTGTTCTGAGCATGATTT+AGG | + | chr4_4:71050799-71050818 | None:intergenic | 40.0% |
!! | AGCTTTGAAGATATGGACGT+TGG | + | chr4_4:71051132-71051151 | None:intergenic | 40.0% |
GTGTTGTCTAAGGAAGTCTC+AGG | - | chr4_4:71050533-71050552 | Msa0700160:intron | 45.0% | |
GTTGTCTAAGGAAGTCTCAG+GGG | - | chr4_4:71050535-71050554 | Msa0700160:intron | 45.0% | |
TTGTCTAAGGAAGTCTCAGG+GGG | - | chr4_4:71050536-71050555 | Msa0700160:intron | 45.0% | |
TTCATAAGAGGCAGGCAAAG+GGG | + | chr4_4:71050614-71050633 | None:intergenic | 45.0% | |
GTGTTGTCTAAGGAAGTCTC+AGG | - | chr4_4:71050533-71050552 | Msa0700160:intron | 45.0% | |
GTTGTCTAAGGAAGTCTCAG+GGG | - | chr4_4:71050535-71050554 | Msa0700160:intron | 45.0% | |
TTGTCTAAGGAAGTCTCAGG+GGG | - | chr4_4:71050536-71050555 | Msa0700160:intron | 45.0% | |
TTCATAAGAGGCAGGCAAAG+GGG | + | chr4_4:71050614-71050633 | None:intergenic | 45.0% | |
! | GGGGGTATGTGTGTTGTCTA+AGG | - | chr4_4:71050523-71050542 | Msa0700160:intron | 50.0% |
TGTCTAAGGAAGTCTCAGGG+GGG | - | chr4_4:71050537-71050556 | Msa0700160:intron | 50.0% | |
ATTACTTCCACGGAACGAGC+TGG | - | chr4_4:71051087-71051106 | Msa0700160:intron | 50.0% | |
TCAATATCCAGCTCGTTCCG+TGG | + | chr4_4:71051097-71051116 | None:intergenic | 50.0% | |
! | GGGGGTATGTGTGTTGTCTA+AGG | - | chr4_4:71050523-71050542 | Msa0700160:intron | 50.0% |
TGTCTAAGGAAGTCTCAGGG+GGG | - | chr4_4:71050537-71050556 | Msa0700160:intron | 50.0% | |
ATTACTTCCACGGAACGAGC+TGG | - | chr4_4:71051087-71051106 | Msa0700160:intron | 50.0% | |
TCAATATCCAGCTCGTTCCG+TGG | + | chr4_4:71051097-71051116 | None:intergenic | 50.0% | |
CTAAGGAAGTCTCAGGGGGG+AGG | - | chr4_4:71050540-71050559 | Msa0700160:intron | 60.0% | |
CTAAGGAAGTCTCAGGGGGG+AGG | - | chr4_4:71050540-71050559 | Msa0700160:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_4 | gene | 71050031 | 71051277 | 71050031 | ID=Msa0700160;Name=Msa0700160 |
chr4_4 | mRNA | 71050031 | 71051277 | 71050031 | ID=Msa0700160-mRNA-1;Parent=Msa0700160;Name=Msa0700160-mRNA-1;_AED=0.40;_eAED=0.42;_QI=0|0|0|1|0|0|2|0|66 |
chr4_4 | exon | 71051273 | 71051277 | 71051273 | ID=Msa0700160-mRNA-1:exon:21572;Parent=Msa0700160-mRNA-1 |
chr4_4 | exon | 71050031 | 71050226 | 71050031 | ID=Msa0700160-mRNA-1:exon:21571;Parent=Msa0700160-mRNA-1 |
chr4_4 | CDS | 71051273 | 71051277 | 71051273 | ID=Msa0700160-mRNA-1:cds;Parent=Msa0700160-mRNA-1 |
chr4_4 | CDS | 71050031 | 71050226 | 71050031 | ID=Msa0700160-mRNA-1:cds;Parent=Msa0700160-mRNA-1 |
Gene Sequence |
Protein sequence |