AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0968590


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0968590 MtrunA17_Chr3g0135461 100.000 196 0 0 1 196 263 458 6.03e-142 403
Msa0968590 MtrunA17_Chr6g0459181 79.082 196 6 1 1 196 49 209 1.16e-103 297
Msa0968590 MtrunA17_Chr3g0103451 49.730 185 93 0 11 195 264 448 7.81e-58 188
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0968590 AT5G22330.1 89.286 196 21 0 1 196 263 458 1.15e-128 370
Msa0968590 AT5G67630.1 48.649 185 95 0 11 195 264 448 2.77e-56 184
Msa0968590 AT3G49830.1 47.568 185 97 0 11 195 265 449 9.05e-53 176

Find 68 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAATTTGTTCACTTTATT+TGG 0.114144 6_3:+99401353 Msa0968590:CDS
TGGCATACCTGTTGACCTAT+TGG 0.318630 6_3:+99400845 Msa0968590:CDS
GGATGTAACCCTACATGATT+TGG 0.331586 6_3:+99399681 Msa0968590:intron
TTTGTGGCAAAGATTACTAT+TGG 0.345084 6_3:-99400457 None:intergenic
TTAGCTTTCCTTGGGGAGAT+TGG 0.351825 6_3:+99401068 Msa0968590:CDS
CGGTCCAGCTGAAATAATTC+AGG 0.353377 6_3:+99400899 Msa0968590:CDS
TCTTCCTAGGTTTCATCATC+TGG 0.372923 6_3:-99399755 None:intergenic
GTTGTCTCTGCCATTTATCT+TGG 0.373972 6_3:-99401222 None:intergenic
ACGTCTACAACATGCTCAAT+AGG 0.374968 6_3:-99401579 None:intergenic
GTTGAGACAAGAAATTAATA+AGG 0.382068 6_3:+99399794 Msa0968590:CDS
AGCGTTGTTGCCAAGATAAA+TGG 0.390480 6_3:+99401212 Msa0968590:CDS
GAGGAAAGTTTAGCTTTCCT+TGG 0.401642 6_3:+99401059 Msa0968590:CDS
TTTCTTGTGAACCTCTCCCT+TGG 0.403331 6_3:-99398303 None:intergenic
CAATAGGAAATGCAGCAATT+AGG 0.406014 6_3:-99401563 None:intergenic
AGGAAAGTTTAGCTTTCCTT+GGG 0.411802 6_3:+99401060 Msa0968590:CDS
AGTGCATATTCCTCTATTTG+TGG 0.417327 6_3:-99400473 None:intergenic
TTCTTGTGAACCTCTCCCTT+GGG 0.424676 6_3:-99398302 None:intergenic
TTTACCTGAATTATTTCAGC+TGG 0.429224 6_3:-99400903 None:intergenic
ACAGGTGCATATGCTAGATA+TGG 0.434605 6_3:+99400390 Msa0968590:intron
CAACACCTTCATCGATATAT+CGG 0.435831 6_3:-99400253 None:intergenic
GGTGTTGCAGAACTTGTCCC+TGG 0.444117 6_3:+99400269 Msa0968590:CDS
AATCGATCCAATAGGTCAAC+AGG 0.450490 6_3:-99400852 None:intergenic
TCAGTGATTTCCGTCTTCCT+AGG 0.453246 6_3:-99399768 None:intergenic
CTCTAAAGCACGATTAAGAT+AGG 0.457106 6_3:-99400422 None:intergenic
GTAATCTTTGCCACAAATAG+AGG 0.461084 6_3:+99400463 Msa0968590:CDS
TTGCTGCTCTTGGAGAAGCT+TGG 0.474441 6_3:-99401391 None:intergenic
GCTGCCAACGCGCGACCTCA+AGG 0.479841 6_3:+99399706 Msa0968590:five_prime_UTR
TGATCACCAATCGATCCAAT+AGG 0.490658 6_3:-99400860 None:intergenic
TGAACCTCTCCCTTGGGAAG+TGG 0.494094 6_3:-99398296 None:intergenic
CTGCCAACGCGCGACCTCAA+GGG 0.494520 6_3:+99399707 Msa0968590:five_prime_UTR
TTGAGCATGTTGTAGACGTA+AGG 0.496878 6_3:+99401583 Msa0968590:three_prime_UTR
TTGGACAACGGACATCTCTA+AGG 0.496930 6_3:+99401087 Msa0968590:CDS
GTGTTGCAGAACTTGTCCCT+GGG 0.505714 6_3:+99400270 Msa0968590:CDS
TGCCAACGCGCGACCTCAAG+GGG 0.510126 6_3:+99399708 Msa0968590:five_prime_UTR
AACAGGTATGCCATGAGGAC+TGG 0.517649 6_3:-99400835 None:intergenic
ATAGAGGAATATGCACTGTA+AGG 0.528143 6_3:+99400479 Msa0968590:CDS
ATCTTGGCAACAACGCTCGC+AGG 0.542251 6_3:-99401206 None:intergenic
GTCAACCGATATATCGATGA+AGG 0.558745 6_3:+99400248 Msa0968590:CDS
ATGGAAATAGTTTCCTACCT+AGG 0.560067 6_3:+99401495 Msa0968590:three_prime_UTR
TGTTGACCTATTGGATCGAT+TGG 0.564185 6_3:+99400854 Msa0968590:CDS
TCGTCAATAAACAGAACCCC+AGG 0.567100 6_3:-99400287 None:intergenic
CAAGTTCCTCCACTTGAGCT+CGG 0.568699 6_3:-99401028 None:intergenic
TGGCAGCATCCAAATCATGT+AGG 0.570363 6_3:-99399690 None:intergenic
TGGGGTTCTGTTTATTGACG+AGG 0.574623 6_3:+99400289 Msa0968590:CDS
ACTGATATGACCAGTCCTCA+TGG 0.575171 6_3:+99400825 Msa0968590:CDS
GGCAGCATCCAAATCATGTA+GGG 0.577366 6_3:-99399689 None:intergenic
AATTATTTCAGCTGGACCGT+AGG 0.577744 6_3:-99400895 None:intergenic
TGTTCCACTTCCCAAGGGAG+AGG 0.578685 6_3:+99398292 Msa0968590:five_prime_UTR
GGAGGAACTTGCTGTGGATG+AGG 0.580534 6_3:+99401040 Msa0968590:CDS
GGAGTATGTTCCACTTCCCA+AGG 0.593628 6_3:+99398286 Msa0968590:five_prime_UTR
TCTAGCTATCCGAGCTCAAG+TGG 0.596118 6_3:+99401019 Msa0968590:CDS
TGGGCCAGATGATGAAACCT+AGG 0.605557 6_3:+99399751 Msa0968590:CDS
GATGATGAAACCTAGGAAGA+CGG 0.610580 6_3:+99399758 Msa0968590:CDS
TGAGCATGTTGTAGACGTAA+GGG 0.610868 6_3:+99401584 Msa0968590:three_prime_UTR
ATCATTCGAACACAAACCTA+CGG 0.612451 6_3:+99400879 Msa0968590:CDS
GCAGCAATTAGGCACTTCCA+AGG 0.619171 6_3:-99401552 None:intergenic
TCAAGTGGAGGAACTTGCTG+TGG 0.623698 6_3:+99401034 Msa0968590:CDS
TCCGTTGTCCAATCTCCCCA+AGG 0.641969 6_3:-99401076 None:intergenic
TGTTGCAGAACTTGTCCCTG+GGG 0.644580 6_3:+99400271 Msa0968590:CDS
AGCTATCCGAGCTCAAGTGG+AGG 0.646357 6_3:+99401022 Msa0968590:CDS
TGGCAGAGACAACATCTGCA+AGG 0.661224 6_3:+99401232 Msa0968590:CDS
TCCTTGGGGAGATTGGACAA+CGG 0.674974 6_3:+99401075 Msa0968590:CDS
GAGTATGTTCCACTTCCCAA+GGG 0.680518 6_3:+99398287 Msa0968590:five_prime_UTR
GGAAAGTTTAGCTTTCCTTG+GGG 0.696347 6_3:+99401061 Msa0968590:CDS
GCCAACGCGCGACCTCAAGG+GGG 0.705450 6_3:+99399709 Msa0968590:five_prime_UTR
CGTCAATAAACAGAACCCCA+GGG 0.715606 6_3:-99400286 None:intergenic
ATTCACAGAAGACTATAACA+AGG 0.722051 6_3:-99401618 None:intergenic
AGGTCAACAGGTATGCCATG+AGG 0.729642 6_3:-99400840 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAATAAAATAAAGCTT+AGG + chr6_3:99398582-99398601 Msa0968590:intron 10.0%
!! TTCATTTATTAAAATGAAAT+TGG + chr6_3:99400112-99400131 Msa0968590:intron 10.0%
!! CATGATAAAAATAATTAAAA+TGG - chr6_3:99400763-99400782 None:intergenic 10.0%
!!! TCATTTTTAATTTATGTTTC+TGG + chr6_3:99399199-99399218 Msa0968590:intron 15.0%
!!! TTTATTTTTTTTGTTCTCAA+AGG + chr6_3:99399660-99399679 Msa0968590:intron 15.0%
!! ACATCACATGAATATAATAA+TGG - chr6_3:99398360-99398379 None:intergenic 20.0%
!! GTAAATTATATTTGAATCCT+TGG + chr6_3:99398401-99398420 Msa0968590:intron 20.0%
!!! TTTTATTTTTTTCAGAGCTA+AGG - chr6_3:99398574-99398593 None:intergenic 20.0%
!!! CACTTTTTAAATTTCTGTTT+AGG + chr6_3:99399288-99399307 Msa0968590:intron 20.0%
!! AAACATTAAGCAAATTTCTA+TGG + chr6_3:99399527-99399546 Msa0968590:intron 20.0%
!! GTTTAAATAAAATTTGTCAG+AGG + chr6_3:99399574-99399593 Msa0968590:intron 20.0%
!! TGTTTAATTGTTTAACTAGA+AGG + chr6_3:99399840-99399859 Msa0968590:intron 20.0%
!! GTTTAATTGTTTAACTAGAA+GGG + chr6_3:99399841-99399860 Msa0968590:intron 20.0%
!! TTTAATTGTTTAACTAGAAG+GGG + chr6_3:99399842-99399861 Msa0968590:intron 20.0%
!!! TTATGTTACCTTTTTTCATT+TGG + chr6_3:99399997-99400016 Msa0968590:intron 20.0%
!!! AATAAATTTTGATTGTCCTT+GGG + chr6_3:99400065-99400084 Msa0968590:intron 20.0%
!! AAAAGTTTCTTAACACAAAA+TGG + chr6_3:99400700-99400719 Msa0968590:intron 20.0%
!!! TGAAATTTGTTCACTTTATT+TGG + chr6_3:99401353-99401372 Msa0968590:CDS 20.0%
!!! TGCTTAGTATTATTTTTGTA+TGG + chr6_3:99401476-99401495 Msa0968590:three_prime_UTR 20.0%
!!! GTTTTGTTTGAAGTTGATAA+TGG + chr6_3:99398495-99398514 Msa0968590:intron 25.0%
!!! AGCTTAGGATATAATTTGTT+TGG + chr6_3:99398597-99398616 Msa0968590:intron 25.0%
!!! GCTTAGGATATAATTTGTTT+GGG + chr6_3:99398598-99398617 Msa0968590:intron 25.0%
! ATTTGTGTATGTATAGAGAA+TGG + chr6_3:99398649-99398668 Msa0968590:intron 25.0%
! TATATGTAATAGTGGTATAG+CGG - chr6_3:99398900-99398919 None:intergenic 25.0%
! CTATACCACTATTACATATA+GGG + chr6_3:99398900-99398919 Msa0968590:intron 25.0%
!! AAAATAAAATAGTGCTGAGT+TGG + chr6_3:99399043-99399062 Msa0968590:intron 25.0%
!! TATTTCTCATATCGGATTTT+TGG + chr6_3:99399405-99399424 Msa0968590:intron 25.0%
! AAAACCAGTGTTATAAATAG+CGG - chr6_3:99399452-99399471 None:intergenic 25.0%
! TAAATAAAATTTGTCAGAGG+AGG + chr6_3:99399577-99399596 Msa0968590:intron 25.0%
!! CAAGATATTTTGTCTCTTAT+GGG + chr6_3:99399732-99399751 Msa0968590:exon 25.0%
! GTTGAGACAAGAAATTAATA+AGG + chr6_3:99399794-99399813 Msa0968590:CDS 25.0%
!! GTTTTCTTCCAAATGAAAAA+AGG - chr6_3:99400008-99400027 None:intergenic 25.0%
! AATCTCATTTCTTAGATTGT+TGG - chr6_3:99400030-99400049 None:intergenic 25.0%
!!! CAATAAATTTTGATTGTCCT+TGG + chr6_3:99400064-99400083 Msa0968590:intron 25.0%
! GTTTACAAAAATGCTTATGT+TGG + chr6_3:99400216-99400235 Msa0968590:intron 25.0%
!! TAAATTGCAGGCTTTAATTA+GGG - chr6_3:99400336-99400355 None:intergenic 25.0%
!! ATAAATTGCAGGCTTTAATT+AGG - chr6_3:99400337-99400356 None:intergenic 25.0%
! AGCATTAGAACTTCATTAAA+TGG - chr6_3:99400365-99400384 None:intergenic 25.0%
! ATTAAGACCTCAAAAATGAT+GGG - chr6_3:99400590-99400609 None:intergenic 25.0%
!!! ATTGACTGTTTTTTTTACAG+AGG + chr6_3:99400801-99400820 Msa0968590:intron 25.0%
!!! TTGACTGTTTTTTTTACAGA+GGG + chr6_3:99400802-99400821 Msa0968590:intron 25.0%
! GAAATAATTCAGGTAAATGA+TGG + chr6_3:99400909-99400928 Msa0968590:intron 25.0%
!!! TATGTGTTGTTTATCATATC+AGG + chr6_3:99401162-99401181 Msa0968590:intron 25.0%
! TAGCAACTCAATTAGTTAAA+GGG - chr6_3:99401304-99401323 None:intergenic 25.0%
!! CTATTTTCAAACTGTTGAAA+TGG + chr6_3:99401434-99401453 Msa0968590:three_prime_UTR 25.0%
CAAGAAAAAAGAGATTGTTC+AGG + chr6_3:99398319-99398338 Msa0968590:five_prime_UTR 30.0%
ATGAAACCTGATTCATAGTA+CGG - chr6_3:99398434-99398453 None:intergenic 30.0%
CATATAGATGATAACAACGT+AGG + chr6_3:99398521-99398540 Msa0968590:intron 30.0%
!! AACGTAGGATATAGTTTGTT+TGG + chr6_3:99398536-99398555 Msa0968590:intron 30.0%
!! ACGTAGGATATAGTTTGTTT+GGG + chr6_3:99398537-99398556 Msa0968590:intron 30.0%
!!! TATTTTTTTCAGAGCTAAGG+AGG - chr6_3:99398571-99398590 None:intergenic 30.0%
!!! GGTAACATTTTGATTGTTTC+CGG + chr6_3:99398619-99398638 Msa0968590:intron 30.0%
ACATACACAAATAGTTGTAC+CGG - chr6_3:99398641-99398660 None:intergenic 30.0%
TGAACTGGAAACAATCAAAA+TGG - chr6_3:99398677-99398696 None:intergenic 30.0%
ACATACACAAATAGTTGAAC+TGG - chr6_3:99398692-99398711 None:intergenic 30.0%
! TAGAGAATTTAAGCATTGCA+AGG + chr6_3:99398713-99398732 Msa0968590:intron 30.0%
TCTTACAATGGTCAAATATC+AGG - chr6_3:99398740-99398759 None:intergenic 30.0%
GATGGAAAACTTTCTTACAA+TGG - chr6_3:99398752-99398771 None:intergenic 30.0%
!!! ATTTTAATTCAGAGCCTTTG+CGG - chr6_3:99398840-99398859 None:intergenic 30.0%
!! CAAAGGCTCTGAATTAAAAT+TGG + chr6_3:99398840-99398859 Msa0968590:intron 30.0%
GCTATACCACTATTACATAT+AGG + chr6_3:99398899-99398918 Msa0968590:intron 30.0%
CAAATCCCTATATGTAATAG+TGG - chr6_3:99398908-99398927 None:intergenic 30.0%
CACTATTACATATAGGGATT+TGG + chr6_3:99398906-99398925 Msa0968590:intron 30.0%
AAATCCGATATGAGAAATAG+CGG - chr6_3:99399404-99399423 None:intergenic 30.0%
ACCTTACTAGAAGAAAAGTA+CGG - chr6_3:99399556-99399575 None:intergenic 30.0%
!! GAAAATATTTTTGCAGAGTC+TGG - chr6_3:99399604-99399623 None:intergenic 30.0%
! GCAAGATATTTTGTCTCTTA+TGG + chr6_3:99399731-99399750 Msa0968590:exon 30.0%
ACTAAATAGCATCTTCATGA+TGG - chr6_3:99399976-99399995 None:intergenic 30.0%
AAGAATAACTATTATGCCCA+AGG - chr6_3:99400084-99400103 None:intergenic 30.0%
ACTTGTGAACAAAAAAGCAA+AGG + chr6_3:99400147-99400166 Msa0968590:intron 30.0%
CTTGTGAACAAAAAAGCAAA+GGG + chr6_3:99400148-99400167 Msa0968590:intron 30.0%
AGCAAAGGGTAAAAAAATGT+AGG + chr6_3:99400162-99400181 Msa0968590:intron 30.0%
GGAGTGATATAAAAACAAGA+AGG + chr6_3:99400183-99400202 Msa0968590:intron 30.0%
AAATGGATGCAATAAATTGC+AGG - chr6_3:99400348-99400367 None:intergenic 30.0%
! AAGTTCTAATGCTTCTTTAC+AGG + chr6_3:99400372-99400391 Msa0968590:intron 30.0%
TTTGTGGCAAAGATTACTAT+TGG - chr6_3:99400460-99400479 None:intergenic 30.0%
! TGTATTAAGTTTTGCTGAAG+TGG + chr6_3:99400521-99400540 Msa0968590:intron 30.0%
GATTAAGACCTCAAAAATGA+TGG - chr6_3:99400591-99400610 None:intergenic 30.0%
! TTTGAGGTCTTAATCTTCTT+CGG + chr6_3:99400596-99400615 Msa0968590:intron 30.0%
! TGATTTTGCAGTATCTCAAT+GGG + chr6_3:99400644-99400663 Msa0968590:intron 30.0%
! TCTCTGTTTTCATGATTAGT+TGG + chr6_3:99400672-99400691 Msa0968590:intron 30.0%
!! CTCTGTTTTCATGATTAGTT+GGG + chr6_3:99400673-99400692 Msa0968590:intron 30.0%
!! TCTGTTTTCATGATTAGTTG+GGG + chr6_3:99400674-99400693 Msa0968590:intron 30.0%
TTTACCTGAATTATTTCAGC+TGG - chr6_3:99400906-99400925 None:intergenic 30.0%
GCTATTTGAAAGAAGGTTAA+GGG - chr6_3:99400935-99400954 None:intergenic 30.0%
TTGAAAGGCTATTTGAAAGA+AGG - chr6_3:99400942-99400961 None:intergenic 30.0%
! TATGCCAAACATGCTAATTT+TGG + chr6_3:99400962-99400981 Msa0968590:intron 30.0%
ATGCAAATAAGTGTGTATGT+TGG - chr6_3:99400993-99401012 None:intergenic 30.0%
ACATATAAGTCACATACGAA+AGG - chr6_3:99401147-99401166 None:intergenic 30.0%
GTAGCAACTCAATTAGTTAA+AGG - chr6_3:99401305-99401324 None:intergenic 30.0%
!!! GCTACTGTTTTGAAATTTGT+AGG + chr6_3:99401320-99401339 Msa0968590:intron 30.0%
!!! ACTGTTTTGAAATTTGTAGG+CGG + chr6_3:99401323-99401342 Msa0968590:intron 30.0%
ATTCACAGAAGACTATAACA+AGG - chr6_3:99401621-99401640 None:intergenic 30.0%
GATAAACCGTACTATGAATC+AGG + chr6_3:99398425-99398444 Msa0968590:intron 35.0%
!! CGTAGGATATAGTTTGTTTG+GGG + chr6_3:99398538-99398557 Msa0968590:intron 35.0%
AAAAGTCACCACTATTGCAA+TGG - chr6_3:99398974-99398993 None:intergenic 35.0%
ATGAAGTGATGAGAGAAGAT+GGG - chr6_3:99399145-99399164 None:intergenic 35.0%
TATGAAGTGATGAGAGAAGA+TGG - chr6_3:99399146-99399165 None:intergenic 35.0%
CATTTACTTCAACCACTTTG+CGG + chr6_3:99399352-99399371 Msa0968590:intron 35.0%
!! GTGTTATAAATAGCGGATTG+CGG - chr6_3:99399445-99399464 None:intergenic 35.0%
CAATCCGCTATTTATAACAC+TGG + chr6_3:99399445-99399464 Msa0968590:intron 35.0%
! TCTTTTCGTGAAAGATGATG+AGG + chr6_3:99399503-99399522 Msa0968590:intron 35.0%
! ACCGTACTTTTCTTCTAGTA+AGG + chr6_3:99399552-99399571 Msa0968590:intron 35.0%
!! TCTAGACACTTGCTATATAC+TGG + chr6_3:99399622-99399641 Msa0968590:intron 35.0%
CAACTCTGACTGATATGTAA+AGG - chr6_3:99399870-99399889 None:intergenic 35.0%
AGAGTTGTTGTCATGTAATC+AGG + chr6_3:99399883-99399902 Msa0968590:intron 35.0%
ATAAGTTCAAACACCTGGTA+AGG + chr6_3:99399908-99399927 Msa0968590:intron 35.0%
!! ATTCTAAAACAGACCCACAA+TGG + chr6_3:99399932-99399951 Msa0968590:intron 35.0%
!! TTCTAAAACAGACCCACAAT+GGG + chr6_3:99399933-99399952 Msa0968590:intron 35.0%
!! AAAATGCTTATGTTGGTGAC+AGG + chr6_3:99400223-99400242 Msa0968590:intron 35.0%
CAACACCTTCATCGATATAT+CGG - chr6_3:99400256-99400275 None:intergenic 35.0%
!! CTCTAAAGCACGATTAAGAT+AGG - chr6_3:99400425-99400444 None:intergenic 35.0%
GTAATCTTTGCCACAAATAG+AGG + chr6_3:99400463-99400482 Msa0968590:CDS 35.0%
AGTGCATATTCCTCTATTTG+TGG - chr6_3:99400476-99400495 None:intergenic 35.0%
ATAGAGGAATATGCACTGTA+AGG + chr6_3:99400479-99400498 Msa0968590:CDS 35.0%
CATTGAGATACTGCAAAATC+AGG - chr6_3:99400645-99400664 None:intergenic 35.0%
! CTGATTTTGCAGTATCTCAA+TGG + chr6_3:99400643-99400662 Msa0968590:intron 35.0%
! GATTTTGCAGTATCTCAATG+GGG + chr6_3:99400645-99400664 Msa0968590:intron 35.0%
ATCATTCGAACACAAACCTA+CGG + chr6_3:99400879-99400898 Msa0968590:CDS 35.0%
GGCTATTTGAAAGAAGGTTA+AGG - chr6_3:99400936-99400955 None:intergenic 35.0%
AGCATGTTTGGCATATTGAA+AGG - chr6_3:99400957-99400976 None:intergenic 35.0%
GCATCCAAAATTAGCATGTT+TGG - chr6_3:99400969-99400988 None:intergenic 35.0%
!! AGGAAAGTTTAGCTTTCCTT+GGG + chr6_3:99401060-99401079 Msa0968590:CDS 35.0%
! TGTATTTTTCTTGCTGCTCT+TGG - chr6_3:99401404-99401423 None:intergenic 35.0%
ATGGAAATAGTTTCCTACCT+AGG + chr6_3:99401495-99401514 Msa0968590:three_prime_UTR 35.0%
GGTCTAACAAAATGGATCAA+AGG - chr6_3:99401534-99401553 None:intergenic 35.0%
! TGATCCATTTTGTTAGACCT+TGG + chr6_3:99401535-99401554 Msa0968590:intron 35.0%
ACTTCCAAGGTCTAACAAAA+TGG - chr6_3:99401542-99401561 None:intergenic 35.0%
CAATAGGAAATGCAGCAATT+AGG - chr6_3:99401566-99401585 None:intergenic 35.0%
CTTTGCGGAGTAACATCTTA+GGG - chr6_3:99398825-99398844 None:intergenic 40.0%
TTCTGCTACCATTGCAATAG+TGG + chr6_3:99398963-99398982 Msa0968590:intron 40.0%
TGAAGTGATGAGAGAAGATG+GGG - chr6_3:99399144-99399163 None:intergenic 40.0%
ACAGCATAGCGCAATATTAG+CGG - chr6_3:99399381-99399400 None:intergenic 40.0%
!! CTGTCCGCTATTTCTCATAT+CGG + chr6_3:99399397-99399416 Msa0968590:intron 40.0%
!! TAGCGGATTGCGGAAAATAA+CGG - chr6_3:99399435-99399454 None:intergenic 40.0%
GGATGTAACCCTACATGATT+TGG + chr6_3:99399681-99399700 Msa0968590:intron 40.0%
TCTTCCTAGGTTTCATCATC+TGG - chr6_3:99399758-99399777 None:intergenic 40.0%
GATGATGAAACCTAGGAAGA+CGG + chr6_3:99399758-99399777 Msa0968590:CDS 40.0%
AGGTCATAAGTTCAAACACC+TGG + chr6_3:99399903-99399922 Msa0968590:intron 40.0%
!!! CTGTTTTAGAATGCCTTACC+AGG - chr6_3:99399924-99399943 None:intergenic 40.0%
ACTTAAAGTCTGCCCATTGT+GGG - chr6_3:99399948-99399967 None:intergenic 40.0%
GTCAACCGATATATCGATGA+AGG + chr6_3:99400248-99400267 Msa0968590:CDS 40.0%
ACAGGTGCATATGCTAGATA+TGG + chr6_3:99400390-99400409 Msa0968590:intron 40.0%
!! CTAGTAGCCCATCATTTTTG+AGG + chr6_3:99400580-99400599 Msa0968590:intron 40.0%
ACTGCAAAATCAGGTCTTCT+AGG - chr6_3:99400636-99400655 None:intergenic 40.0%
AATCGATCCAATAGGTCAAC+AGG - chr6_3:99400855-99400874 None:intergenic 40.0%
TGTTGACCTATTGGATCGAT+TGG + chr6_3:99400854-99400873 Msa0968590:CDS 40.0%
TGATCACCAATCGATCCAAT+AGG - chr6_3:99400863-99400882 None:intergenic 40.0%
AATTATTTCAGCTGGACCGT+AGG - chr6_3:99400898-99400917 None:intergenic 40.0%
!! GAGGAAAGTTTAGCTTTCCT+TGG + chr6_3:99401059-99401078 Msa0968590:CDS 40.0%
!! GGAAAGTTTAGCTTTCCTTG+GGG + chr6_3:99401061-99401080 Msa0968590:CDS 40.0%
AGCGTTGTTGCCAAGATAAA+TGG + chr6_3:99401212-99401231 Msa0968590:CDS 40.0%
! GTTGTCTCTGCCATTTATCT+TGG - chr6_3:99401225-99401244 None:intergenic 40.0%
ACGTCTACAACATGCTCAAT+AGG - chr6_3:99401582-99401601 None:intergenic 40.0%
TTGAGCATGTTGTAGACGTA+AGG + chr6_3:99401583-99401602 Msa0968590:three_prime_UTR 40.0%
TGAGCATGTTGTAGACGTAA+GGG + chr6_3:99401584-99401603 Msa0968590:three_prime_UTR 40.0%
GAACATACTCCTCAGCTTCA+AGG - chr6_3:99398277-99398296 None:intergenic 45.0%
GAGTATGTTCCACTTCCCAA+GGG + chr6_3:99398287-99398306 Msa0968590:five_prime_UTR 45.0%
TTCTTGTGAACCTCTCCCTT+GGG - chr6_3:99398305-99398324 None:intergenic 45.0%
TTTCTTGTGAACCTCTCCCT+TGG - chr6_3:99398306-99398325 None:intergenic 45.0%
CATAGTACGGTTTATCGCCA+AGG - chr6_3:99398421-99398440 None:intergenic 45.0%
GTCTAGCAGAGGAACTAGTT+TGG + chr6_3:99398781-99398800 Msa0968590:intron 45.0%
! TAGCAGAGGAACTAGTTTGG+TGG + chr6_3:99398784-99398803 Msa0968590:intron 45.0%
CCTTTGCGGAGTAACATCTT+AGG - chr6_3:99398826-99398845 None:intergenic 45.0%
CCTAAGATGTTACTCCGCAA+AGG + chr6_3:99398823-99398842 Msa0968590:intron 45.0%
GCAGAATCGCAATAGCGTAT+CGG - chr6_3:99398949-99398968 None:intergenic 45.0%
!! TACCTAGGTAGTGGGGTTTA+GGG - chr6_3:99399093-99399112 None:intergenic 45.0%
!! TTACCTAGGTAGTGGGGTTT+AGG - chr6_3:99399094-99399113 None:intergenic 45.0%
TGAGAGGTTACCTAGGTAGT+GGG - chr6_3:99399101-99399120 None:intergenic 45.0%
ATGAGAGGTTACCTAGGTAG+TGG - chr6_3:99399102-99399121 None:intergenic 45.0%
TCAGTGATGAGAGGTTACCT+AGG - chr6_3:99399108-99399127 None:intergenic 45.0%
GGCAGCATCCAAATCATGTA+GGG - chr6_3:99399692-99399711 None:intergenic 45.0%
TGGCAGCATCCAAATCATGT+AGG - chr6_3:99399693-99399712 None:intergenic 45.0%
CAAAATATCTTGCCCCCTTG+AGG - chr6_3:99399724-99399743 None:intergenic 45.0%
TCAGTGATTTCCGTCTTCCT+AGG - chr6_3:99399771-99399790 None:intergenic 45.0%
CACTTAAAGTCTGCCCATTG+TGG - chr6_3:99399949-99399968 None:intergenic 45.0%
CACAATGGGCAGACTTTAAG+TGG + chr6_3:99399947-99399966 Msa0968590:intron 45.0%
CGTCAATAAACAGAACCCCA+GGG - chr6_3:99400289-99400308 None:intergenic 45.0%
TCGTCAATAAACAGAACCCC+AGG - chr6_3:99400290-99400309 None:intergenic 45.0%
TGGGGTTCTGTTTATTGACG+AGG + chr6_3:99400289-99400308 Msa0968590:CDS 45.0%
ACTGATATGACCAGTCCTCA+TGG + chr6_3:99400825-99400844 Msa0968590:CDS 45.0%
TGGCATACCTGTTGACCTAT+TGG + chr6_3:99400845-99400864 Msa0968590:CDS 45.0%
CGGTCCAGCTGAAATAATTC+AGG + chr6_3:99400899-99400918 Msa0968590:CDS 45.0%
! TTAGCTTTCCTTGGGGAGAT+TGG + chr6_3:99401068-99401087 Msa0968590:CDS 45.0%
TTGGACAACGGACATCTCTA+AGG + chr6_3:99401087-99401106 Msa0968590:CDS 45.0%
ATTGCGTGTTTGTCCTAGGT+AGG - chr6_3:99401511-99401530 None:intergenic 45.0%
AAGGATTGCGTGTTTGTCCT+AGG - chr6_3:99401515-99401534 None:intergenic 45.0%
!! ATGATAAAAATAATTAAAAT+GGG - chr6_3:99400762-99400781 None:intergenic 5.0%
GGAGTATGTTCCACTTCCCA+AGG + chr6_3:99398286-99398305 Msa0968590:five_prime_UTR 50.0%
CTGCTAGACTGCTATGCAGA+TGG - chr6_3:99398770-99398789 None:intergenic 50.0%
TCTGCATAGCAGTCTAGCAG+AGG + chr6_3:99398770-99398789 Msa0968590:intron 50.0%
!! GCTGAGTTGGTGATGAGATG+AGG + chr6_3:99399056-99399075 Msa0968590:intron 50.0%
!! ACCTAGGTAGTGGGGTTTAG+GGG - chr6_3:99399092-99399111 None:intergenic 50.0%
GAGAGGTTACCTAGGTAGTG+GGG - chr6_3:99399100-99399119 None:intergenic 50.0%
AGAGGAGGTTCAGTGATGAG+AGG - chr6_3:99399117-99399136 None:intergenic 50.0%
AGTGATGAGAGAAGATGGGG+AGG - chr6_3:99399141-99399160 None:intergenic 50.0%
TATTAGCGGAAGCCGCAAAG+TGG - chr6_3:99399367-99399386 None:intergenic 50.0%
TGGGCCAGATGATGAAACCT+AGG + chr6_3:99399751-99399770 Msa0968590:CDS 50.0%
GTGTTGCAGAACTTGTCCCT+GGG + chr6_3:99400270-99400289 Msa0968590:CDS 50.0%
TGTTGCAGAACTTGTCCCTG+GGG + chr6_3:99400271-99400290 Msa0968590:CDS 50.0%
AACAGGTATGCCATGAGGAC+TGG - chr6_3:99400838-99400857 None:intergenic 50.0%
AGGTCAACAGGTATGCCATG+AGG - chr6_3:99400843-99400862 None:intergenic 50.0%
TCTAGCTATCCGAGCTCAAG+TGG + chr6_3:99401019-99401038 Msa0968590:CDS 50.0%
CAAGTTCCTCCACTTGAGCT+CGG - chr6_3:99401031-99401050 None:intergenic 50.0%
!! TCAAGTGGAGGAACTTGCTG+TGG + chr6_3:99401034-99401053 Msa0968590:CDS 50.0%
TCCTTGGGGAGATTGGACAA+CGG + chr6_3:99401075-99401094 Msa0968590:CDS 50.0%
TGGCAGAGACAACATCTGCA+AGG + chr6_3:99401232-99401251 Msa0968590:CDS 50.0%
TTGCTGCTCTTGGAGAAGCT+TGG - chr6_3:99401394-99401413 None:intergenic 50.0%
GCAGCAATTAGGCACTTCCA+AGG - chr6_3:99401555-99401574 None:intergenic 50.0%
TGTTCCACTTCCCAAGGGAG+AGG + chr6_3:99398292-99398311 Msa0968590:five_prime_UTR 55.0%
TGAACCTCTCCCTTGGGAAG+TGG - chr6_3:99398299-99398318 None:intergenic 55.0%
ACCCCTAAACCCCACTACCT+AGG + chr6_3:99399088-99399107 Msa0968590:intron 55.0%
! GGTGTTGCAGAACTTGTCCC+TGG + chr6_3:99400269-99400288 Msa0968590:CDS 55.0%
AGCTATCCGAGCTCAAGTGG+AGG + chr6_3:99401022-99401041 Msa0968590:CDS 55.0%
!! GGAGGAACTTGCTGTGGATG+AGG + chr6_3:99401040-99401059 Msa0968590:CDS 55.0%
TCCGTTGTCCAATCTCCCCA+AGG - chr6_3:99401079-99401098 None:intergenic 55.0%
ATCTTGGCAACAACGCTCGC+AGG - chr6_3:99401209-99401228 None:intergenic 55.0%
AGAAGATGGGGAGGCAGAGG+AGG - chr6_3:99399132-99399151 None:intergenic 60.0%
GAGAGAAGATGGGGAGGCAG+AGG - chr6_3:99399135-99399154 None:intergenic 60.0%
CTGCCAACGCGCGACCTCAA+GGG + chr6_3:99399707-99399726 Msa0968590:five_prime_UTR 65.0%
TGCCAACGCGCGACCTCAAG+GGG + chr6_3:99399708-99399727 Msa0968590:five_prime_UTR 65.0%
GCTGCCAACGCGCGACCTCA+AGG + chr6_3:99399706-99399725 Msa0968590:five_prime_UTR 70.0%
GCCAACGCGCGACCTCAAGG+GGG + chr6_3:99399709-99399728 Msa0968590:five_prime_UTR 70.0%
GCCCCCTTGAGGTCGCGCGT+TGG - chr6_3:99399713-99399732 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 99398273 99401643 99398273 ID=Msa0968590;Name=Msa0968590
chr6_3 mRNA 99398273 99401643 99398273 ID=Msa0968590-mRNA-1;Parent=Msa0968590;Name=Msa0968590-mRNA-1;_AED=0.19;_eAED=0.19;_QI=136|1|1|1|0.75|0.55|9|176|196
chr6_3 exon 99398273 99398340 99398273 ID=Msa0968590-mRNA-1:exon:18706;Parent=Msa0968590-mRNA-1
chr6_3 exon 99399682 99399815 99399682 ID=Msa0968590-mRNA-1:exon:18707;Parent=Msa0968590-mRNA-1
chr6_3 exon 99400245 99400310 99400245 ID=Msa0968590-mRNA-1:exon:18708;Parent=Msa0968590-mRNA-1
chr6_3 exon 99400394 99400500 99400394 ID=Msa0968590-mRNA-1:exon:18709;Parent=Msa0968590-mRNA-1
chr6_3 exon 99400821 99400920 99400821 ID=Msa0968590-mRNA-1:exon:18710;Parent=Msa0968590-mRNA-1
chr6_3 exon 99401017 99401108 99401017 ID=Msa0968590-mRNA-1:exon:18711;Parent=Msa0968590-mRNA-1
chr6_3 exon 99401184 99401253 99401184 ID=Msa0968590-mRNA-1:exon:18712;Parent=Msa0968590-mRNA-1
chr6_3 exon 99401342 99401514 99401342 ID=Msa0968590-mRNA-1:exon:18713;Parent=Msa0968590-mRNA-1
chr6_3 exon 99401551 99401643 99401551 ID=Msa0968590-mRNA-1:exon:18714;Parent=Msa0968590-mRNA-1
chr6_3 five_prime_UTR 99398273 99398340 99398273 ID=Msa0968590-mRNA-1:five_prime_utr;Parent=Msa0968590-mRNA-1
chr6_3 five_prime_UTR 99399682 99399749 99399682 ID=Msa0968590-mRNA-1:five_prime_utr;Parent=Msa0968590-mRNA-1
chr6_3 CDS 99399750 99399815 99399750 ID=Msa0968590-mRNA-1:cds;Parent=Msa0968590-mRNA-1
chr6_3 CDS 99400245 99400310 99400245 ID=Msa0968590-mRNA-1:cds;Parent=Msa0968590-mRNA-1
chr6_3 CDS 99400394 99400500 99400394 ID=Msa0968590-mRNA-1:cds;Parent=Msa0968590-mRNA-1
chr6_3 CDS 99400821 99400920 99400821 ID=Msa0968590-mRNA-1:cds;Parent=Msa0968590-mRNA-1
chr6_3 CDS 99401017 99401108 99401017 ID=Msa0968590-mRNA-1:cds;Parent=Msa0968590-mRNA-1
chr6_3 CDS 99401184 99401253 99401184 ID=Msa0968590-mRNA-1:cds;Parent=Msa0968590-mRNA-1
chr6_3 CDS 99401342 99401431 99401342 ID=Msa0968590-mRNA-1:cds;Parent=Msa0968590-mRNA-1
chr6_3 three_prime_UTR 99401432 99401514 99401432 ID=Msa0968590-mRNA-1:three_prime_utr;Parent=Msa0968590-mRNA-1
chr6_3 three_prime_UTR 99401551 99401643 99401551 ID=Msa0968590-mRNA-1:three_prime_utr;Parent=Msa0968590-mRNA-1
Gene Sequence

>Msa0968590

ATGGGCCAGATGATGAAACCTAGGAAGACGGAAATCACTGACAAGTTGAGACAAGAAATTAATAAGGTTGTCAACCGATATATCGATGAAGGTGTTGCAGAACTTGTCCCTGGGGTTCTGTTTATTGACGAGGTGCATATGCTAGATATGGAGTGTTTTTCCTATCTTAATCGTGCTTTAGAGAGCTCGCTATCTCCAATAGTAATCTTTGCCACAAATAGAGGAATATGCACTGTAAGAGGGACTGATATGACCAGTCCTCATGGCATACCTGTTGACCTATTGGATCGATTGGTGATCATTCGAACACAAACCTACGGTCCAGCTGAAATAATTCAGATTCTAGCTATCCGAGCTCAAGTGGAGGAACTTGCTGTGGATGAGGAAAGTTTAGCTTTCCTTGGGGAGATTGGACAACGGACATCTCTAAGGCATGCAGTTCAACTTTTATCACCTGCGAGCGTTGTTGCCAAGATAAATGGCAGAGACAACATCTGCAAGGCGGATCTTGATGAAATTTGTTCACTTTATTTGGATGCAAAATCATCTGCCAAGCTTCTCCAAGAGCAGCAAGAAAAATACATATCATAA

Protein sequence

>Msa0968590

MGQMMKPRKTEITDKLRQEINKVVNRYIDEGVAELVPGVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICTVRGTDMTSPHGIPVDLLDRLVIIRTQTYGPAEIIQILAIRAQVEELAVDEESLAFLGEIGQRTSLRHAVQLLSPASVVAKINGRDNICKADLDEICSLYLDAKSSAKLLQEQQEKYIS*