Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0700620 | XP_013446625.1 | 97.409 | 193 | 5 | 0 | 1 | 193 | 1 | 193 | 2.50e-138 | 394 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0700620 | sp|Q9SDN0|DNJ20_ARATH | 50.505 | 198 | 85 | 5 | 1 | 190 | 1 | 193 | 1.57e-58 | 185 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0700620 | A0A072TT90 | 97.409 | 193 | 5 | 0 | 1 | 193 | 1 | 193 | 1.19e-138 | 394 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0656940 | Msa0700620 | 0.960058 | 3.950718e-118 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0700620 | MtrunA17_Chr8g0378161 | 97.409 | 193 | 5 | 0 | 1 | 193 | 1 | 193 | 2.30e-142 | 394 |
Msa0700620 | MtrunA17_Chr4g0050581 | 32.143 | 168 | 96 | 6 | 24 | 189 | 22 | 173 | 1.24e-17 | 76.6 |
Msa0700620 | MtrunA17_Chr5g0405521 | 48.485 | 66 | 34 | 0 | 62 | 127 | 74 | 139 | 6.22e-15 | 69.3 |
Msa0700620 | MtrunA17_Chr5g0405501 | 45.714 | 70 | 38 | 0 | 60 | 129 | 71 | 140 | 2.11e-14 | 67.8 |
Msa0700620 | MtrunA17_Chr5g0405491 | 44.928 | 69 | 38 | 0 | 61 | 129 | 72 | 140 | 3.52e-14 | 67.0 |
Msa0700620 | MtrunA17_Chr8g0371891 | 42.857 | 70 | 40 | 0 | 60 | 129 | 47 | 116 | 1.14e-13 | 65.1 |
Msa0700620 | MtrunA17_Chr2g0333221 | 35.644 | 101 | 54 | 2 | 39 | 131 | 41 | 138 | 7.57e-13 | 66.2 |
Msa0700620 | MtrunA17_Chr3g0103131 | 47.692 | 65 | 34 | 0 | 60 | 124 | 59 | 123 | 7.65e-13 | 63.5 |
Msa0700620 | MtrunA17_Chr7g0271891 | 46.970 | 66 | 33 | 1 | 61 | 124 | 17 | 82 | 1.07e-12 | 63.2 |
Msa0700620 | MtrunA17_Chr7g0269841 | 42.466 | 73 | 40 | 1 | 59 | 131 | 25 | 95 | 4.05e-12 | 63.9 |
Msa0700620 | MtrunA17_Chr8g0344721 | 44.118 | 68 | 34 | 1 | 61 | 124 | 11 | 78 | 4.57e-12 | 62.8 |
Msa0700620 | MtrunA17_Chr2g0328581 | 44.444 | 63 | 32 | 1 | 62 | 124 | 77 | 136 | 1.58e-11 | 60.8 |
Msa0700620 | MtrunA17_Chr5g0426951 | 42.466 | 73 | 40 | 1 | 58 | 130 | 81 | 151 | 1.70e-11 | 62.4 |
Msa0700620 | MtrunA17_Chr3g0138471 | 40.845 | 71 | 41 | 1 | 61 | 131 | 5 | 74 | 2.25e-11 | 61.6 |
Msa0700620 | MtrunA17_Chr3g0123861 | 38.889 | 72 | 41 | 1 | 54 | 125 | 76 | 144 | 2.35e-11 | 61.6 |
Msa0700620 | MtrunA17_Chr6g0478651 | 36.066 | 122 | 65 | 5 | 19 | 132 | 21 | 137 | 2.46e-11 | 61.6 |
Msa0700620 | MtrunA17_Chr7g0253281 | 45.455 | 66 | 33 | 1 | 62 | 127 | 56 | 118 | 3.68e-11 | 60.8 |
Msa0700620 | MtrunA17_Chr1g0206121 | 30.328 | 122 | 76 | 2 | 20 | 141 | 1 | 113 | 9.45e-11 | 59.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0700620 | AT4G13830.2 | 50.505 | 198 | 85 | 5 | 1 | 190 | 1 | 193 | 1.59e-59 | 185 |
Msa0700620 | AT4G13830.1 | 58.015 | 131 | 48 | 3 | 23 | 147 | 23 | 152 | 9.76e-43 | 140 |
Msa0700620 | AT4G13830.3 | 57.252 | 131 | 49 | 3 | 23 | 147 | 23 | 152 | 2.22e-42 | 140 |
Msa0700620 | AT4G36040.1 | 47.887 | 71 | 36 | 1 | 60 | 129 | 65 | 135 | 1.55e-14 | 68.6 |
Msa0700620 | AT1G56300.2 | 46.269 | 67 | 34 | 1 | 60 | 124 | 13 | 79 | 1.39e-13 | 64.7 |
Msa0700620 | AT3G13310.1 | 37.624 | 101 | 52 | 3 | 29 | 127 | 35 | 126 | 1.72e-13 | 65.5 |
Msa0700620 | AT1G56300.1 | 46.269 | 67 | 34 | 1 | 60 | 124 | 13 | 79 | 2.41e-13 | 65.1 |
Msa0700620 | AT2G17880.1 | 45.455 | 66 | 36 | 0 | 60 | 125 | 68 | 133 | 2.16e-12 | 62.8 |
Msa0700620 | AT4G39960.1 | 40.000 | 80 | 45 | 1 | 55 | 134 | 80 | 156 | 5.07e-12 | 63.9 |
Msa0700620 | AT4G39960.2 | 40.000 | 80 | 45 | 1 | 55 | 134 | 80 | 156 | 5.07e-12 | 63.9 |
Msa0700620 | AT3G62600.1 | 41.096 | 73 | 41 | 1 | 59 | 131 | 25 | 95 | 1.09e-11 | 62.8 |
Msa0700620 | AT2G22360.1 | 40.541 | 74 | 41 | 1 | 61 | 134 | 87 | 157 | 1.42e-11 | 62.8 |
Msa0700620 | AT3G17830.1 | 35.537 | 121 | 69 | 5 | 20 | 137 | 23 | 137 | 2.02e-11 | 62.4 |
Msa0700620 | AT3G14200.1 | 43.939 | 66 | 36 | 1 | 60 | 124 | 12 | 77 | 2.16e-11 | 61.2 |
Msa0700620 | AT5G25530.2 | 40.845 | 71 | 41 | 1 | 61 | 131 | 5 | 74 | 2.67e-11 | 61.6 |
Msa0700620 | AT1G80030.2 | 38.462 | 78 | 45 | 1 | 54 | 131 | 69 | 143 | 4.08e-11 | 61.6 |
Msa0700620 | AT1G80030.3 | 38.462 | 78 | 45 | 1 | 54 | 131 | 69 | 143 | 4.08e-11 | 61.6 |
Msa0700620 | AT1G80030.1 | 38.462 | 78 | 45 | 1 | 54 | 131 | 69 | 143 | 4.08e-11 | 61.6 |
Msa0700620 | AT1G59980.1 | 46.970 | 66 | 33 | 1 | 59 | 124 | 22 | 85 | 4.09e-11 | 61.6 |
Msa0700620 | AT1G80030.4 | 38.462 | 78 | 45 | 1 | 54 | 131 | 69 | 143 | 4.40e-11 | 61.2 |
Msa0700620 | AT1G59980.2 | 46.970 | 66 | 33 | 1 | 59 | 124 | 22 | 85 | 4.42e-11 | 61.2 |
Msa0700620 | AT1G59725.1 | 40.000 | 65 | 39 | 0 | 61 | 125 | 5 | 69 | 8.34e-11 | 60.5 |
Msa0700620 | AT2G35720.1 | 33.000 | 100 | 66 | 1 | 59 | 157 | 14 | 113 | 8.99e-11 | 60.5 |
Find 79 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACGGAGCTTCTACGATCTTC+TGG | 0.253540 | 4_4:-71751834 | Msa0700620:CDS |
TGCTATCACTTCTTCTCTTC+AGG | 0.257402 | 4_4:+71748635 | None:intergenic |
TATAATAAAATTAAACAAAA+TGG | 0.282522 | 4_4:+71748356 | None:intergenic |
TTCTAAACAAGTAAACTATA+TGG | 0.291258 | 4_4:+71748418 | None:intergenic |
TCCATCAATGAACCGGATTC+TGG | 0.328084 | 4_4:+71751806 | None:intergenic |
GTATACCAAGAGGTTTATTC+AGG | 0.341476 | 4_4:-71751711 | Msa0700620:CDS |
TTGAAGGTGGCTTTAAGCTT+TGG | 0.356103 | 4_4:+71751878 | None:intergenic |
TGAAGGTGGCTTTAAGCTTT+GGG | 0.376965 | 4_4:+71751879 | None:intergenic |
GGATGACCCGAATGAGATTC+GGG | 0.401935 | 4_4:+71751904 | None:intergenic |
CCCATGACCCGAATCTCATT+CGG | 0.404157 | 4_4:-71751911 | Msa0700620:CDS |
ACCAGAATCCGGTTCATTGA+TGG | 0.409355 | 4_4:-71751807 | Msa0700620:CDS |
CGCCACAACGCCGTCGTTGA+AGG | 0.409679 | 4_4:+71751862 | None:intergenic |
AGGATGACCCGAATGAGATT+CGG | 0.411788 | 4_4:+71751903 | None:intergenic |
TCGGGTCATGGGTATGGTGG+TGG | 0.415955 | 4_4:+71751922 | None:intergenic |
TTTGATATCCATCAATGAAC+CGG | 0.418110 | 4_4:+71751799 | None:intergenic |
ATGAAGCGATAATCGCTTCC+GGG | 0.421198 | 4_4:+71751983 | None:intergenic |
ATGCTATAATCATTCTGATC+AGG | 0.431312 | 4_4:-71751591 | Msa0700620:intron |
AAACTTTGTCTGATCCTTCA+AGG | 0.443921 | 4_4:-71751673 | Msa0700620:CDS |
GAGAGAGAGATGCGTTGTTA+CGG | 0.451601 | 4_4:-71752016 | Msa0700620:exon |
GATGAAGCGATAATCGCTTC+CGG | 0.453064 | 4_4:+71751982 | None:intergenic |
GGATGTTTCACCACCGGATC+GGG | 0.463368 | 4_4:-71751741 | Msa0700620:CDS |
CCCGAATGAGATTCGGGTCA+TGG | 0.464892 | 4_4:+71751910 | None:intergenic |
CTCGAATACGCCAGCAGAGG+GGG | 0.466457 | 4_4:-71748576 | Msa0700620:CDS |
TTATTAGGTGAGTGAACAAA+AGG | 0.466965 | 4_4:-71748695 | Msa0700620:intron |
CCATGACCCGAATCTCATTC+GGG | 0.467417 | 4_4:-71751910 | Msa0700620:CDS |
TCATACATAATCCTCCTTGA+AGG | 0.468151 | 4_4:+71751659 | None:intergenic |
CGGAGCTTCTACGATCTTCT+GGG | 0.475758 | 4_4:-71751833 | Msa0700620:CDS |
CAAGAGGTTTATTCAGGTGC+AGG | 0.475899 | 4_4:-71751705 | Msa0700620:CDS |
TGAGTGAACAAAAGGATGAA+TGG | 0.478243 | 4_4:-71748687 | Msa0700620:CDS |
CGGGTCATGGGTATGGTGGT+GGG | 0.482731 | 4_4:+71751923 | None:intergenic |
CAACGACGGCGTTGTGGCGG+AGG | 0.487062 | 4_4:-71751858 | Msa0700620:CDS |
GATTATGTATGATAGAGATA+TGG | 0.488939 | 4_4:-71751648 | Msa0700620:CDS |
AGTGAAGGAGGAGGTAGTGT+TGG | 0.495639 | 4_4:+71751956 | None:intergenic |
TGAGATTCGGGTCATGGGTA+TGG | 0.497946 | 4_4:+71751916 | None:intergenic |
GGGTATGGTGGTGGGTCGGA+AGG | 0.500342 | 4_4:+71751931 | None:intergenic |
CGATCCGGTGGTGAAACATC+CGG | 0.500626 | 4_4:+71751743 | None:intergenic |
GGCTCGAATACGCCAGCAGA+GGG | 0.500705 | 4_4:-71748578 | Msa0700620:CDS |
GTATACTCTTCCACCCGATC+CGG | 0.515930 | 4_4:+71751728 | None:intergenic |
TCGAATACGCCAGCAGAGGG+GGG | 0.524687 | 4_4:-71748575 | Msa0700620:CDS |
GATCCGGTGGTGAAACATCC+GGG | 0.526103 | 4_4:+71751744 | None:intergenic |
CCGAATGAGATTCGGGTCAT+GGG | 0.531452 | 4_4:+71751911 | None:intergenic |
AAGAAGTGATAGCAAGGTCA+TGG | 0.532505 | 4_4:-71748626 | Msa0700620:CDS |
CTTCTGGGCATACCAGAATC+CGG | 0.533025 | 4_4:-71751818 | Msa0700620:CDS |
CGAATACGCCAGCAGAGGGG+GGG | 0.536867 | 4_4:-71748574 | Msa0700620:CDS |
CGGATGTTTCACCACCGGAT+CGG | 0.539387 | 4_4:-71751742 | Msa0700620:CDS |
CTTAAAGCCACCTTCAACGA+CGG | 0.544649 | 4_4:-71751872 | Msa0700620:CDS |
CGGAAGGACAGTGAAGGAGG+AGG | 0.549643 | 4_4:+71751947 | None:intergenic |
CTGCACCTGAATAAACCTCT+TGG | 0.549933 | 4_4:+71751706 | None:intergenic |
TCATGGGTATGGTGGTGGGT+CGG | 0.552227 | 4_4:+71751927 | None:intergenic |
CGGCTCGAATACGCCAGCAG+AGG | 0.554435 | 4_4:-71748579 | Msa0700620:CDS |
CACCTTCAACGACGGCGTTG+TGG | 0.564399 | 4_4:-71751864 | Msa0700620:CDS |
GGTGGCTTTAAGCTTTGGGA+AGG | 0.570592 | 4_4:+71751883 | None:intergenic |
ACGGCGTTGTGGCGGAGGAA+CGG | 0.572751 | 4_4:-71751853 | Msa0700620:CDS |
TGCTGCTGATAATACGTCAT+GGG | 0.573906 | 4_4:-71748602 | Msa0700620:CDS |
CACAACGCCGTCGTTGAAGG+TGG | 0.575442 | 4_4:+71751865 | None:intergenic |
CTTCAACGACGGCGTTGTGG+CGG | 0.582226 | 4_4:-71751861 | Msa0700620:CDS |
TTTATTATAATCACTCCACT+TGG | 0.582304 | 4_4:-71748342 | Msa0700620:three_prime_UTR |
GGTCGGAAGGACAGTGAAGG+AGG | 0.583185 | 4_4:+71751944 | None:intergenic |
TGTTACGGCTTAACAATCCC+CGG | 0.585898 | 4_4:-71752001 | Msa0700620:CDS |
TACTCTTCCACCCGATCCGG+TGG | 0.594060 | 4_4:+71751731 | None:intergenic |
AGGATGAATGGAAATCTCGT+TGG | 0.596088 | 4_4:-71748675 | Msa0700620:CDS |
GAAGAGAAGAAGTGATAGCA+AGG | 0.602140 | 4_4:-71748632 | Msa0700620:CDS |
GAGGTTTATTCAGGTGCAGG+AGG | 0.604858 | 4_4:-71751702 | Msa0700620:CDS |
TGTTTCACCACCGGATCGGG+TGG | 0.605740 | 4_4:-71751738 | Msa0700620:CDS |
ATGATAGAGATATGGCTAGA+GGG | 0.609573 | 4_4:-71751640 | Msa0700620:CDS |
CGTTGGCAATCTCAACTCGA+TGG | 0.610624 | 4_4:-71748658 | Msa0700620:CDS |
GTGGGTCGGAAGGACAGTGA+AGG | 0.611080 | 4_4:+71751941 | None:intergenic |
GATTCGGGTCATGGGTATGG+TGG | 0.612358 | 4_4:+71751919 | None:intergenic |
GCTCGAATACGCCAGCAGAG+GGG | 0.614172 | 4_4:-71748577 | Msa0700620:CDS |
TATGATAGAGATATGGCTAG+AGG | 0.622164 | 4_4:-71751641 | Msa0700620:CDS |
CCCCAGAAAACAAAACCAAG+TGG | 0.632711 | 4_4:+71748327 | None:intergenic |
TCACCCGGATGTTTCACCAC+CGG | 0.635031 | 4_4:-71751747 | Msa0700620:CDS |
TGCTGATAATACGTCATGGG+CGG | 0.647620 | 4_4:-71748599 | Msa0700620:CDS |
CTTTGTCTGATCCTTCAAGG+AGG | 0.657466 | 4_4:-71751670 | Msa0700620:CDS |
ATGCTGCTGATAATACGTCA+TGG | 0.662327 | 4_4:-71748603 | Msa0700620:CDS |
TGAAGCGATAATCGCTTCCG+GGG | 0.671244 | 4_4:+71751984 | None:intergenic |
ATTATACACATAGAGAACAA+AGG | 0.681965 | 4_4:+71748534 | None:intergenic |
ACTTGCAAGAAAGTATCACC+CGG | 0.704249 | 4_4:-71751762 | Msa0700620:CDS |
GGGTGGAAGAGTATACCAAG+AGG | 0.760271 | 4_4:-71751721 | Msa0700620:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTATGAAATATAAGAAAAAA+TGG | + | chr4_4:71748891-71748910 | None:intergenic | 10.0% |
!! | GTTATTAATTATTATTTGTT+AGG | - | chr4_4:71749506-71749525 | Msa0700620:intron | 10.0% |
!! | GAATATATTATAAATTGTTT+CGG | + | chr4_4:71750746-71750765 | None:intergenic | 10.0% |
!! | AGAAAAAATATAATTGATTA+TGG | + | chr4_4:71750882-71750901 | None:intergenic | 10.0% |
!!! | TAATCAATTATATTTTTTCT+TGG | - | chr4_4:71750882-71750901 | Msa0700620:intron | 10.0% |
!!! | ATTTTTATTTTTCATTGAAT+AGG | - | chr4_4:71751647-71751666 | Msa0700620:CDS | 10.0% |
!!! | TTTGATTTTTTTTCTTCTTA+TGG | - | chr4_4:71748914-71748933 | Msa0700620:intron | 15.0% |
!!! | TTGATTTTTTTTCTTCTTAT+GGG | - | chr4_4:71748915-71748934 | Msa0700620:intron | 15.0% |
!!! | TTTATGTTGATTTTTTGTTT+TGG | - | chr4_4:71748986-71749005 | Msa0700620:intron | 15.0% |
!!! | TTTTTGAACTTTTATATGAT+TGG | - | chr4_4:71749101-71749120 | Msa0700620:intron | 15.0% |
!!! | ATTTGATTTATACATACTAT+CGG | + | chr4_4:71749151-71749170 | None:intergenic | 15.0% |
!! | CTTATAATGAAATAAAAAAC+AGG | - | chr4_4:71750765-71750784 | Msa0700620:intron | 15.0% |
!! | AAATATAATTGATTATGGAA+GGG | + | chr4_4:71750877-71750896 | None:intergenic | 15.0% |
!! | AAAATATAATTGATTATGGA+AGG | + | chr4_4:71750878-71750897 | None:intergenic | 15.0% |
!! | GATTGTTAAGAAATTTAAAA+TGG | - | chr4_4:71751164-71751183 | Msa0700620:intron | 15.0% |
!!! | GACAACTTTTTAATAATAAT+TGG | - | chr4_4:71751225-71751244 | Msa0700620:intron | 15.0% |
!! | NNNNNNNNNTCAAAAGAGAT+AGG | - | chr4_4:71751546-71751565 | Msa0700620:intron | 15.0% |
!! | NNNNNNNNTCAAAAGAGATA+GGG | - | chr4_4:71751547-71751566 | Msa0700620:intron | 15.0% |
!! | CTTGTTTAGAAAAAAAAAAA+TGG | - | chr4_4:71752030-71752049 | Msa0700620:five_prime_UTR | 15.0% |
!!! | TGATTTTTTTTCTTCTTATG+GGG | - | chr4_4:71748916-71748935 | Msa0700620:intron | 20.0% |
!!! | GTTTATGTTTGTTATTGTTA+TGG | - | chr4_4:71749048-71749067 | Msa0700620:intron | 20.0% |
!! | TGTTAAAGAGTTAATTGATA+TGG | - | chr4_4:71749076-71749095 | Msa0700620:intron | 20.0% |
!!! | TTGTCAAGTTATATCATTTT+TGG | - | chr4_4:71749174-71749193 | Msa0700620:intron | 20.0% |
!! | TTGCTTAAAAATAGCATATA+TGG | - | chr4_4:71749837-71749856 | Msa0700620:intron | 20.0% |
!!! | ATGTTAATATTAGTTTTGCT+TGG | - | chr4_4:71749867-71749886 | Msa0700620:intron | 20.0% |
!!! | TGTTAATATTAGTTTTGCTT+GGG | - | chr4_4:71749868-71749887 | Msa0700620:intron | 20.0% |
!!! | ATAAATTGTAAACTTTTCAG+GGG | + | chr4_4:71750085-71750104 | None:intergenic | 20.0% |
!!! | CATAAATTGTAAACTTTTCA+GGG | + | chr4_4:71750086-71750105 | None:intergenic | 20.0% |
!!! | TCATAAATTGTAAACTTTTC+AGG | + | chr4_4:71750087-71750106 | None:intergenic | 20.0% |
!!! | TAAATTTTGATTACATGACA+TGG | - | chr4_4:71750175-71750194 | Msa0700620:intron | 20.0% |
!!! | AAATTATTTTCCTACTGATT+TGG | - | chr4_4:71750373-71750392 | Msa0700620:intron | 20.0% |
!!! | CAGTTTTTTGTGATAAAAAA+TGG | + | chr4_4:71750616-71750635 | None:intergenic | 20.0% |
!! | TTACTTTGATTCTTCTTAAA+AGG | + | chr4_4:71750670-71750689 | None:intergenic | 20.0% |
!!! | AGTTGTTTTAAATGTTAAGT+TGG | - | chr4_4:71751077-71751096 | Msa0700620:intron | 20.0% |
!!! | ATCGTCATTATTTATTGATT+GGG | + | chr4_4:71751319-71751338 | None:intergenic | 20.0% |
!! | TATCGTCATTATTTATTGAT+TGG | + | chr4_4:71751320-71751339 | None:intergenic | 20.0% |
!! | TAAGTTATTGCTTTCTTATT+AGG | - | chr4_4:71751726-71751745 | Msa0700620:CDS | 20.0% |
!! | TTCTAAACAAGTAAACTATA+TGG | + | chr4_4:71752021-71752040 | None:intergenic | 20.0% |
! | GATTATGTATGATAGAGATA+TGG | - | chr4_4:71748788-71748807 | Msa0700620:intron | 25.0% |
! | AATAAGCTGAAAATAGCTTA+TGG | - | chr4_4:71749315-71749334 | Msa0700620:intron | 25.0% |
!!! | TATTTTTTTCTCCCTTTTTG+AGG | - | chr4_4:71749530-71749549 | Msa0700620:intron | 25.0% |
! | ACAAATTACAACCTCAAAAA+GGG | + | chr4_4:71749544-71749563 | None:intergenic | 25.0% |
! | AACAAATTACAACCTCAAAA+AGG | + | chr4_4:71749545-71749564 | None:intergenic | 25.0% |
! | AAAGCTTCTCAAACAAAAAA+AGG | + | chr4_4:71749631-71749650 | None:intergenic | 25.0% |
!!! | TTTTTTGTTTGAGAAGCTTT+TGG | - | chr4_4:71749631-71749650 | Msa0700620:intron | 25.0% |
! | TACCATGCAAAATCAATTTA+AGG | + | chr4_4:71749721-71749740 | None:intergenic | 25.0% |
!!! | TCCTTAAATTGATTTTGCAT+GGG | - | chr4_4:71749717-71749736 | Msa0700620:intron | 25.0% |
! | ACATTAATAATTGAAGAGCT+TGG | - | chr4_4:71750044-71750063 | Msa0700620:intron | 25.0% |
! | TTACAATTTATGACTGAAAC+CGG | - | chr4_4:71750094-71750113 | Msa0700620:intron | 25.0% |
! | TTGATATATATTTGCTCCTA+AGG | + | chr4_4:71750402-71750421 | None:intergenic | 25.0% |
! | GAGCAAATATATATCAAAAC+CGG | - | chr4_4:71750405-71750424 | Msa0700620:intron | 25.0% |
!!! | GGAGTATCGAAATATTTTAA+GGG | - | chr4_4:71750435-71750454 | Msa0700620:intron | 25.0% |
!!! | GAGTATCGAAATATTTTAAG+GGG | - | chr4_4:71750436-71750455 | Msa0700620:intron | 25.0% |
!!! | AGTATCGAAATATTTTAAGG+GGG | - | chr4_4:71750437-71750456 | Msa0700620:intron | 25.0% |
! | ATTTGTTTAATCATGACTTC+TGG | - | chr4_4:71750466-71750485 | Msa0700620:intron | 25.0% |
!! | CTCTTAGGTTCAAATATTTT+AGG | - | chr4_4:71750540-71750559 | Msa0700620:intron | 25.0% |
! | TTAAACTAATCACATAATCC+AGG | - | chr4_4:71751129-71751148 | Msa0700620:intron | 25.0% |
! | TTAAAATGGTAAGTTTGTCT+TGG | - | chr4_4:71751178-71751197 | Msa0700620:intron | 25.0% |
! | ATAATATAATCCCTGAATGA+TGG | - | chr4_4:71751417-71751436 | Msa0700620:intron | 25.0% |
! | ATTATACACATAGAGAACAA+AGG | + | chr4_4:71751905-71751924 | None:intergenic | 25.0% |
!!! | CAAAGAGACACATTTTTTTT+TGG | + | chr4_4:71752060-71752079 | None:intergenic | 25.0% |
! | TTTATTATAATCACTCCACT+TGG | - | chr4_4:71752094-71752113 | Msa0700620:five_prime_UTR | 25.0% |
TTTGATATCCATCAATGAAC+CGG | + | chr4_4:71748640-71748659 | None:intergenic | 30.0% | |
ATGCTATAATCATTCTGATC+AGG | - | chr4_4:71748845-71748864 | Msa0700620:intron | 30.0% | |
TACATACTATCGGTGTAAAA+AGG | + | chr4_4:71749141-71749160 | None:intergenic | 30.0% | |
! | ACTGTTTTCATAAGCTATTC+TGG | - | chr4_4:71749280-71749299 | Msa0700620:intron | 30.0% |
TTATTGTGCAACTTCTTTGT+TGG | - | chr4_4:71749590-71749609 | Msa0700620:intron | 30.0% | |
!! | GTCCTTAAATTGATTTTGCA+TGG | - | chr4_4:71749716-71749735 | Msa0700620:intron | 30.0% |
AACACAAGAATCATCTATGA+TGG | + | chr4_4:71749777-71749796 | None:intergenic | 30.0% | |
!! | GTCCTTAAATTGATTTTGCA+TGG | - | chr4_4:71749716-71749735 | Msa0700620:intron | 30.0% |
!! | CCTTAAATTGATTTTGCATG+GGG | - | chr4_4:71749718-71749737 | Msa0700620:intron | 30.0% |
! | AGTTAGTTTGATGTAGAACT+TGG | + | chr4_4:71749909-71749928 | None:intergenic | 30.0% |
TACAATTTATGACTGAAACC+GGG | - | chr4_4:71750095-71750114 | Msa0700620:intron | 30.0% | |
TGTGGTTTCATCATCATTTA+AGG | - | chr4_4:71750198-71750217 | Msa0700620:intron | 30.0% | |
ATATATCAAAACCGGATTGT+AGG | - | chr4_4:71750413-71750432 | Msa0700620:intron | 30.0% | |
TATATCAAAACCGGATTGTA+GGG | - | chr4_4:71750414-71750433 | Msa0700620:intron | 30.0% | |
!!! | GGGAGTATCGAAATATTTTA+AGG | - | chr4_4:71750434-71750453 | Msa0700620:intron | 30.0% |
ATTTGAACCTAAGAGAAAGA+AGG | + | chr4_4:71750535-71750554 | None:intergenic | 30.0% | |
TTAGGATGATGAAACACTTT+AGG | - | chr4_4:71750558-71750577 | Msa0700620:intron | 30.0% | |
GAAATAAAAAACAGGCAACT+TGG | - | chr4_4:71750773-71750792 | Msa0700620:intron | 30.0% | |
AGCAAAATGTCTTCAAGAAA+AGG | + | chr4_4:71750927-71750946 | None:intergenic | 30.0% | |
TTGCTTGTATGAGTATGTTA+CGG | - | chr4_4:71750942-71750961 | Msa0700620:intron | 30.0% | |
CACACAAAAGGAAATGAATA+TGG | + | chr4_4:71750994-71751013 | None:intergenic | 30.0% | |
TGATTCATTACCATCATTCA+GGG | + | chr4_4:71751430-71751449 | None:intergenic | 30.0% | |
ATGATTCATTACCATCATTC+AGG | + | chr4_4:71751431-71751450 | None:intergenic | 30.0% | |
! | TTTTCATTGAATAGGACCTT+TGG | - | chr4_4:71751655-71751674 | Msa0700620:CDS | 30.0% |
TTTCATTGAATAGGACCTTT+GGG | - | chr4_4:71751656-71751675 | Msa0700620:CDS | 30.0% | |
TTATTAGGTGAGTGAACAAA+AGG | - | chr4_4:71751741-71751760 | Msa0700620:CDS | 30.0% | |
GTATACCAAGAGGTTTATTC+AGG | - | chr4_4:71748725-71748744 | Msa0700620:intron | 35.0% | |
AAACTTTGTCTGATCCTTCA+AGG | - | chr4_4:71748763-71748782 | Msa0700620:intron | 35.0% | |
TCATACATAATCCTCCTTGA+AGG | + | chr4_4:71748780-71748799 | None:intergenic | 35.0% | |
TATGATAGAGATATGGCTAG+AGG | - | chr4_4:71748795-71748814 | Msa0700620:intron | 35.0% | |
ATGATAGAGATATGGCTAGA+GGG | - | chr4_4:71748796-71748815 | Msa0700620:intron | 35.0% | |
AAAACAATGAAGGGTCACTT+TGG | + | chr4_4:71749424-71749443 | None:intergenic | 35.0% | |
! | ACCCTTCATTGTTTTCATCT+GGG | - | chr4_4:71749429-71749448 | Msa0700620:intron | 35.0% |
TCCCAGATGAAAACAATGAA+GGG | + | chr4_4:71749433-71749452 | None:intergenic | 35.0% | |
! | TTCATTGTTTTCATCTGGGA+GGG | - | chr4_4:71749433-71749452 | Msa0700620:intron | 35.0% |
! | TTTGTCAAGGTTCTGATTTG+TGG | - | chr4_4:71749460-71749479 | Msa0700620:intron | 35.0% |
! | TCTCATGTTTTGTCAGTGTA+TGG | - | chr4_4:71749564-71749583 | Msa0700620:intron | 35.0% |
! | ATGCTCTTTTTACACCATCA+TGG | - | chr4_4:71749675-71749694 | Msa0700620:intron | 35.0% |
AACACAAGAATCATCCATGA+TGG | + | chr4_4:71749692-71749711 | None:intergenic | 35.0% | |
ATGGTATCTCAAGCAAGTTT+AGG | - | chr4_4:71749735-71749754 | Msa0700620:intron | 35.0% | |
CCCCATGCAAAATCAATTTA+AGG | + | chr4_4:71749806-71749825 | None:intergenic | 35.0% | |
CATTTGAAGAAGACTCATCA+AGG | - | chr4_4:71750018-71750037 | Msa0700620:intron | 35.0% | |
!! | TTATTTTGCAGTGGAAAACC+CGG | + | chr4_4:71750116-71750135 | None:intergenic | 35.0% |
!!! | CAGATTAGCTTATTTTGCAG+TGG | + | chr4_4:71750125-71750144 | None:intergenic | 35.0% |
TTTGATTACATGACATGGTG+TGG | - | chr4_4:71750180-71750199 | Msa0700620:intron | 35.0% | |
AAGCTTTCACAGAACTGAAA+TGG | - | chr4_4:71750300-71750319 | Msa0700620:intron | 35.0% | |
!! | TTCTGGTTCCTGATATTTAC+TGG | - | chr4_4:71750483-71750502 | Msa0700620:intron | 35.0% |
ATCAAGCACCAGTAAATATC+AGG | + | chr4_4:71750494-71750513 | None:intergenic | 35.0% | |
!! | AGTACATTTTAAGTGTGCTG+TGG | - | chr4_4:71750714-71750733 | Msa0700620:intron | 35.0% |
AAAAACAGGCAACTTGGTTT+AGG | - | chr4_4:71750779-71750798 | Msa0700620:intron | 35.0% | |
AAAACAGGCAACTTGGTTTA+GGG | - | chr4_4:71750780-71750799 | Msa0700620:intron | 35.0% | |
!! | GTGTAACTGACTTACGTTTT+GGG | - | chr4_4:71750802-71750821 | Msa0700620:intron | 35.0% |
CGTTGACATATACACACAAA+AGG | + | chr4_4:71751006-71751025 | None:intergenic | 35.0% | |
!! | AGTAACTTGTTCAGTGTTTG+TGG | + | chr4_4:71751046-71751065 | None:intergenic | 35.0% |
ACAATCAGAAAACAACATCC+TGG | + | chr4_4:71751150-71751169 | None:intergenic | 35.0% | |
TTCATTGAATAGGACCTTTG+GGG | - | chr4_4:71751657-71751676 | Msa0700620:CDS | 35.0% | |
TGAGTGAACAAAAGGATGAA+TGG | - | chr4_4:71751749-71751768 | Msa0700620:CDS | 35.0% | |
!! | TGAAGGTGGCTTTAAGCTTT+GGG | + | chr4_4:71748560-71748579 | None:intergenic | 40.0% |
!! | TTGAAGGTGGCTTTAAGCTT+TGG | + | chr4_4:71748561-71748580 | None:intergenic | 40.0% |
!! | ACTTGCAAGAAAGTATCACC+CGG | - | chr4_4:71748674-71748693 | Msa0700620:CDS | 40.0% |
! | GACCCTTCATTGTTTTCATC+TGG | - | chr4_4:71749428-71749447 | Msa0700620:intron | 40.0% |
CTCCCAGATGAAAACAATGA+AGG | + | chr4_4:71749434-71749453 | None:intergenic | 40.0% | |
! | CTTCATTGTTTTCATCTGGG+AGG | - | chr4_4:71749432-71749451 | Msa0700620:intron | 40.0% |
TTAAGGCTTCCTCCTTATCT+TGG | - | chr4_4:71750215-71750234 | Msa0700620:intron | 40.0% | |
ATTGAATTGCGACCACAATG+TGG | + | chr4_4:71750243-71750262 | None:intergenic | 40.0% | |
CCTAAGGTAACCAAATCAGT+AGG | + | chr4_4:71750386-71750405 | None:intergenic | 40.0% | |
!! | CCTACTGATTTGGTTACCTT+AGG | - | chr4_4:71750383-71750402 | Msa0700620:intron | 40.0% |
TTTCGATACTCCCTACAATC+CGG | + | chr4_4:71750427-71750446 | None:intergenic | 40.0% | |
GAAAGAAGGAGATAGCACAA+AGG | + | chr4_4:71750521-71750540 | None:intergenic | 40.0% | |
GCTATCTCCTTCTTTCTCTT+AGG | - | chr4_4:71750525-71750544 | Msa0700620:intron | 40.0% | |
!! | GGTGTAACTGACTTACGTTT+TGG | - | chr4_4:71750801-71750820 | Msa0700620:intron | 40.0% |
! | AACTTGTTCAGTGTTTGTGG+TGG | + | chr4_4:71751043-71751062 | None:intergenic | 40.0% |
TCATTGAATAGGACCTTTGG+GGG | - | chr4_4:71751658-71751677 | Msa0700620:CDS | 40.0% | |
AGGATGAATGGAAATCTCGT+TGG | - | chr4_4:71751761-71751780 | Msa0700620:CDS | 40.0% | |
TGCTATCACTTCTTCTCTTC+AGG | + | chr4_4:71751804-71751823 | None:intergenic | 40.0% | |
GAAGAGAAGAAGTGATAGCA+AGG | - | chr4_4:71751804-71751823 | Msa0700620:CDS | 40.0% | |
AAGAAGTGATAGCAAGGTCA+TGG | - | chr4_4:71751810-71751829 | Msa0700620:CDS | 40.0% | |
ATGCTGCTGATAATACGTCA+TGG | - | chr4_4:71751833-71751852 | Msa0700620:CDS | 40.0% | |
TGCTGCTGATAATACGTCAT+GGG | - | chr4_4:71751834-71751853 | Msa0700620:CDS | 40.0% | |
GAGAGAGAGATGCGTTGTTA+CGG | - | chr4_4:71748420-71748439 | Msa0700620:three_prime_UTR | 45.0% | |
TGTTACGGCTTAACAATCCC+CGG | - | chr4_4:71748435-71748454 | Msa0700620:three_prime_UTR | 45.0% | |
ATGAAGCGATAATCGCTTCC+GGG | + | chr4_4:71748456-71748475 | None:intergenic | 45.0% | |
GATGAAGCGATAATCGCTTC+CGG | + | chr4_4:71748457-71748476 | None:intergenic | 45.0% | |
AGGATGACCCGAATGAGATT+CGG | + | chr4_4:71748536-71748555 | None:intergenic | 45.0% | |
CTTAAAGCCACCTTCAACGA+CGG | - | chr4_4:71748564-71748583 | Msa0700620:exon | 45.0% | |
ACCAGAATCCGGTTCATTGA+TGG | - | chr4_4:71748629-71748648 | Msa0700620:CDS | 45.0% | |
TCCATCAATGAACCGGATTC+TGG | + | chr4_4:71748633-71748652 | None:intergenic | 45.0% | |
CTGCACCTGAATAAACCTCT+TGG | + | chr4_4:71748733-71748752 | None:intergenic | 45.0% | |
CAAGAGGTTTATTCAGGTGC+AGG | - | chr4_4:71748731-71748750 | Msa0700620:intron | 45.0% | |
CTTTGTCTGATCCTTCAAGG+AGG | - | chr4_4:71748766-71748785 | Msa0700620:intron | 45.0% | |
AATGTGGAGCCAAGATAAGG+AGG | + | chr4_4:71750227-71750246 | None:intergenic | 45.0% | |
CACAATGTGGAGCCAAGATA+AGG | + | chr4_4:71750230-71750249 | None:intergenic | 45.0% | |
CTTATCTTGGCTCCACATTG+TGG | - | chr4_4:71750228-71750247 | Msa0700620:intron | 45.0% | |
CATTGAATAGGACCTTTGGG+GGG | - | chr4_4:71751659-71751678 | Msa0700620:CDS | 45.0% | |
TGCTGATAATACGTCATGGG+CGG | - | chr4_4:71751837-71751856 | Msa0700620:CDS | 45.0% | |
!!! | TTAATAAATTTTCATAATTT+TGG | + | chr4_4:71750268-71750287 | None:intergenic | 5.0% |
!! | TATAATAAAATTAAACAAAA+TGG | + | chr4_4:71752083-71752102 | None:intergenic | 5.0% |
TGAAGCGATAATCGCTTCCG+GGG | + | chr4_4:71748455-71748474 | None:intergenic | 50.0% | |
AGTGAAGGAGGAGGTAGTGT+TGG | + | chr4_4:71748483-71748502 | None:intergenic | 50.0% | |
TGAGATTCGGGTCATGGGTA+TGG | + | chr4_4:71748523-71748542 | None:intergenic | 50.0% | |
CCGAATGAGATTCGGGTCAT+GGG | + | chr4_4:71748528-71748547 | None:intergenic | 50.0% | |
CCCATGACCCGAATCTCATT+CGG | - | chr4_4:71748525-71748544 | Msa0700620:three_prime_UTR | 50.0% | |
CCATGACCCGAATCTCATTC+GGG | - | chr4_4:71748526-71748545 | Msa0700620:three_prime_UTR | 50.0% | |
GGATGACCCGAATGAGATTC+GGG | + | chr4_4:71748535-71748554 | None:intergenic | 50.0% | |
!! | GGTGGCTTTAAGCTTTGGGA+AGG | + | chr4_4:71748556-71748575 | None:intergenic | 50.0% |
ACGGAGCTTCTACGATCTTC+TGG | - | chr4_4:71748602-71748621 | Msa0700620:CDS | 50.0% | |
CGGAGCTTCTACGATCTTCT+GGG | - | chr4_4:71748603-71748622 | Msa0700620:CDS | 50.0% | |
CTTCTGGGCATACCAGAATC+CGG | - | chr4_4:71748618-71748637 | Msa0700620:CDS | 50.0% | |
GTATACTCTTCCACCCGATC+CGG | + | chr4_4:71748711-71748730 | None:intergenic | 50.0% | |
! | GGGTGGAAGAGTATACCAAG+AGG | - | chr4_4:71748715-71748734 | Msa0700620:intron | 50.0% |
GAGGTTTATTCAGGTGCAGG+AGG | - | chr4_4:71748734-71748753 | Msa0700620:intron | 50.0% | |
!! | CTGGGAGGGTTGATTTGTCA+AGG | - | chr4_4:71749447-71749466 | Msa0700620:intron | 50.0% |
! | AGTGTTTGTGGTGGTGAGCT+GGG | + | chr4_4:71751034-71751053 | None:intergenic | 50.0% |
! | AATAGGACCTTTGGGGGGAT+TGG | - | chr4_4:71751664-71751683 | Msa0700620:CDS | 50.0% |
CGTTGGCAATCTCAACTCGA+TGG | - | chr4_4:71751778-71751797 | Msa0700620:CDS | 50.0% | |
!! | TCATGGGTATGGTGGTGGGT+CGG | + | chr4_4:71748512-71748531 | None:intergenic | 55.0% |
GATTCGGGTCATGGGTATGG+TGG | + | chr4_4:71748520-71748539 | None:intergenic | 55.0% | |
CCCGAATGAGATTCGGGTCA+TGG | + | chr4_4:71748529-71748548 | None:intergenic | 55.0% | |
TCACCCGGATGTTTCACCAC+CGG | - | chr4_4:71748689-71748708 | Msa0700620:CDS | 55.0% | |
GATCCGGTGGTGAAACATCC+GGG | + | chr4_4:71748695-71748714 | None:intergenic | 55.0% | |
CGATCCGGTGGTGAAACATC+CGG | + | chr4_4:71748696-71748715 | None:intergenic | 55.0% | |
CGGATGTTTCACCACCGGAT+CGG | - | chr4_4:71748694-71748713 | Msa0700620:intron | 55.0% | |
GGATGTTTCACCACCGGATC+GGG | - | chr4_4:71748695-71748714 | Msa0700620:intron | 55.0% | |
! | CAGTGTTTGTGGTGGTGAGC+TGG | + | chr4_4:71751035-71751054 | None:intergenic | 55.0% |
CTTCTAGCCAATCCCCCCAA+AGG | + | chr4_4:71751674-71751693 | None:intergenic | 55.0% | |
CGGAAGGACAGTGAAGGAGG+AGG | + | chr4_4:71748492-71748511 | None:intergenic | 60.0% | |
GGTCGGAAGGACAGTGAAGG+AGG | + | chr4_4:71748495-71748514 | None:intergenic | 60.0% | |
GTGGGTCGGAAGGACAGTGA+AGG | + | chr4_4:71748498-71748517 | None:intergenic | 60.0% | |
CGGGTCATGGGTATGGTGGT+GGG | + | chr4_4:71748516-71748535 | None:intergenic | 60.0% | |
TCGGGTCATGGGTATGGTGG+TGG | + | chr4_4:71748517-71748536 | None:intergenic | 60.0% | |
CACAACGCCGTCGTTGAAGG+TGG | + | chr4_4:71748574-71748593 | None:intergenic | 60.0% | |
CACCTTCAACGACGGCGTTG+TGG | - | chr4_4:71748572-71748591 | Msa0700620:CDS | 60.0% | |
CTTCAACGACGGCGTTGTGG+CGG | - | chr4_4:71748575-71748594 | Msa0700620:CDS | 60.0% | |
TGTTTCACCACCGGATCGGG+TGG | - | chr4_4:71748698-71748717 | Msa0700620:intron | 60.0% | |
TACTCTTCCACCCGATCCGG+TGG | + | chr4_4:71748708-71748727 | None:intergenic | 60.0% | |
GGCTCGAATACGCCAGCAGA+GGG | - | chr4_4:71751858-71751877 | Msa0700620:CDS | 60.0% | |
GCTCGAATACGCCAGCAGAG+GGG | - | chr4_4:71751859-71751878 | Msa0700620:CDS | 60.0% | |
CTCGAATACGCCAGCAGAGG+GGG | - | chr4_4:71751860-71751879 | Msa0700620:CDS | 60.0% | |
TCGAATACGCCAGCAGAGGG+GGG | - | chr4_4:71751861-71751880 | Msa0700620:CDS | 60.0% | |
!! | GGGTATGGTGGTGGGTCGGA+AGG | + | chr4_4:71748508-71748527 | None:intergenic | 65.0% |
CGCCACAACGCCGTCGTTGA+AGG | + | chr4_4:71748577-71748596 | None:intergenic | 65.0% | |
! | ACGGCGTTGTGGCGGAGGAA+CGG | - | chr4_4:71748583-71748602 | Msa0700620:CDS | 65.0% |
CGGCTCGAATACGCCAGCAG+AGG | - | chr4_4:71751857-71751876 | Msa0700620:CDS | 65.0% | |
CGAATACGCCAGCAGAGGGG+GGG | - | chr4_4:71751862-71751881 | Msa0700620:CDS | 65.0% | |
GTCACAATCCCCCCCTCTGC+TGG | + | chr4_4:71751873-71751892 | None:intergenic | 65.0% | |
CAACGACGGCGTTGTGGCGG+AGG | - | chr4_4:71748578-71748597 | Msa0700620:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_4 | gene | 71748330 | 71752128 | 71748330 | ID=Msa0700620;Name=Msa0700620 |
chr4_4 | mRNA | 71748330 | 71752128 | 71748330 | ID=Msa0700620-mRNA-1;Parent=Msa0700620;Name=Msa0700620-mRNA-1;_AED=0.00;_eAED=0.00;_QI=99|1|1|1|1|1|2|237|193 |
chr4_4 | exon | 71748330 | 71748710 | 71748330 | ID=Msa0700620-mRNA-1:exon:21855;Parent=Msa0700620-mRNA-1 |
chr4_4 | exon | 71751592 | 71752128 | 71751592 | ID=Msa0700620-mRNA-1:exon:21854;Parent=Msa0700620-mRNA-1 |
chr4_4 | five_prime_UTR | 71752030 | 71752128 | 71752030 | ID=Msa0700620-mRNA-1:five_prime_utr;Parent=Msa0700620-mRNA-1 |
chr4_4 | CDS | 71751592 | 71752029 | 71751592 | ID=Msa0700620-mRNA-1:cds;Parent=Msa0700620-mRNA-1 |
chr4_4 | CDS | 71748567 | 71748710 | 71748567 | ID=Msa0700620-mRNA-1:cds;Parent=Msa0700620-mRNA-1 |
chr4_4 | three_prime_UTR | 71748330 | 71748566 | 71748330 | ID=Msa0700620-mRNA-1:three_prime_utr;Parent=Msa0700620-mRNA-1 |
Gene Sequence |
Protein sequence |