AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0700620


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0700620 MtrunA17_Chr8g0378161 97.409 193 5 0 1 193 1 193 2.30e-142 394
Msa0700620 MtrunA17_Chr4g0050581 32.143 168 96 6 24 189 22 173 1.24e-17 76.6
Msa0700620 MtrunA17_Chr5g0405521 48.485 66 34 0 62 127 74 139 6.22e-15 69.3
Msa0700620 MtrunA17_Chr5g0405501 45.714 70 38 0 60 129 71 140 2.11e-14 67.8
Msa0700620 MtrunA17_Chr5g0405491 44.928 69 38 0 61 129 72 140 3.52e-14 67.0
Msa0700620 MtrunA17_Chr8g0371891 42.857 70 40 0 60 129 47 116 1.14e-13 65.1
Msa0700620 MtrunA17_Chr2g0333221 35.644 101 54 2 39 131 41 138 7.57e-13 66.2
Msa0700620 MtrunA17_Chr3g0103131 47.692 65 34 0 60 124 59 123 7.65e-13 63.5
Msa0700620 MtrunA17_Chr7g0271891 46.970 66 33 1 61 124 17 82 1.07e-12 63.2
Msa0700620 MtrunA17_Chr7g0269841 42.466 73 40 1 59 131 25 95 4.05e-12 63.9
Msa0700620 MtrunA17_Chr8g0344721 44.118 68 34 1 61 124 11 78 4.57e-12 62.8
Msa0700620 MtrunA17_Chr2g0328581 44.444 63 32 1 62 124 77 136 1.58e-11 60.8
Msa0700620 MtrunA17_Chr5g0426951 42.466 73 40 1 58 130 81 151 1.70e-11 62.4
Msa0700620 MtrunA17_Chr3g0138471 40.845 71 41 1 61 131 5 74 2.25e-11 61.6
Msa0700620 MtrunA17_Chr3g0123861 38.889 72 41 1 54 125 76 144 2.35e-11 61.6
Msa0700620 MtrunA17_Chr6g0478651 36.066 122 65 5 19 132 21 137 2.46e-11 61.6
Msa0700620 MtrunA17_Chr7g0253281 45.455 66 33 1 62 127 56 118 3.68e-11 60.8
Msa0700620 MtrunA17_Chr1g0206121 30.328 122 76 2 20 141 1 113 9.45e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0700620 AT4G13830.2 50.505 198 85 5 1 190 1 193 1.59e-59 185
Msa0700620 AT4G13830.1 58.015 131 48 3 23 147 23 152 9.76e-43 140
Msa0700620 AT4G13830.3 57.252 131 49 3 23 147 23 152 2.22e-42 140
Msa0700620 AT4G36040.1 47.887 71 36 1 60 129 65 135 1.55e-14 68.6
Msa0700620 AT1G56300.2 46.269 67 34 1 60 124 13 79 1.39e-13 64.7
Msa0700620 AT3G13310.1 37.624 101 52 3 29 127 35 126 1.72e-13 65.5
Msa0700620 AT1G56300.1 46.269 67 34 1 60 124 13 79 2.41e-13 65.1
Msa0700620 AT2G17880.1 45.455 66 36 0 60 125 68 133 2.16e-12 62.8
Msa0700620 AT4G39960.1 40.000 80 45 1 55 134 80 156 5.07e-12 63.9
Msa0700620 AT4G39960.2 40.000 80 45 1 55 134 80 156 5.07e-12 63.9
Msa0700620 AT3G62600.1 41.096 73 41 1 59 131 25 95 1.09e-11 62.8
Msa0700620 AT2G22360.1 40.541 74 41 1 61 134 87 157 1.42e-11 62.8
Msa0700620 AT3G17830.1 35.537 121 69 5 20 137 23 137 2.02e-11 62.4
Msa0700620 AT3G14200.1 43.939 66 36 1 60 124 12 77 2.16e-11 61.2
Msa0700620 AT5G25530.2 40.845 71 41 1 61 131 5 74 2.67e-11 61.6
Msa0700620 AT1G80030.2 38.462 78 45 1 54 131 69 143 4.08e-11 61.6
Msa0700620 AT1G80030.3 38.462 78 45 1 54 131 69 143 4.08e-11 61.6
Msa0700620 AT1G80030.1 38.462 78 45 1 54 131 69 143 4.08e-11 61.6
Msa0700620 AT1G59980.1 46.970 66 33 1 59 124 22 85 4.09e-11 61.6
Msa0700620 AT1G80030.4 38.462 78 45 1 54 131 69 143 4.40e-11 61.2
Msa0700620 AT1G59980.2 46.970 66 33 1 59 124 22 85 4.42e-11 61.2
Msa0700620 AT1G59725.1 40.000 65 39 0 61 125 5 69 8.34e-11 60.5
Msa0700620 AT2G35720.1 33.000 100 66 1 59 157 14 113 8.99e-11 60.5

Find 79 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACGGAGCTTCTACGATCTTC+TGG 0.253540 4_4:-71751834 Msa0700620:CDS
TGCTATCACTTCTTCTCTTC+AGG 0.257402 4_4:+71748635 None:intergenic
TATAATAAAATTAAACAAAA+TGG 0.282522 4_4:+71748356 None:intergenic
TTCTAAACAAGTAAACTATA+TGG 0.291258 4_4:+71748418 None:intergenic
TCCATCAATGAACCGGATTC+TGG 0.328084 4_4:+71751806 None:intergenic
GTATACCAAGAGGTTTATTC+AGG 0.341476 4_4:-71751711 Msa0700620:CDS
TTGAAGGTGGCTTTAAGCTT+TGG 0.356103 4_4:+71751878 None:intergenic
TGAAGGTGGCTTTAAGCTTT+GGG 0.376965 4_4:+71751879 None:intergenic
GGATGACCCGAATGAGATTC+GGG 0.401935 4_4:+71751904 None:intergenic
CCCATGACCCGAATCTCATT+CGG 0.404157 4_4:-71751911 Msa0700620:CDS
ACCAGAATCCGGTTCATTGA+TGG 0.409355 4_4:-71751807 Msa0700620:CDS
CGCCACAACGCCGTCGTTGA+AGG 0.409679 4_4:+71751862 None:intergenic
AGGATGACCCGAATGAGATT+CGG 0.411788 4_4:+71751903 None:intergenic
TCGGGTCATGGGTATGGTGG+TGG 0.415955 4_4:+71751922 None:intergenic
TTTGATATCCATCAATGAAC+CGG 0.418110 4_4:+71751799 None:intergenic
ATGAAGCGATAATCGCTTCC+GGG 0.421198 4_4:+71751983 None:intergenic
ATGCTATAATCATTCTGATC+AGG 0.431312 4_4:-71751591 Msa0700620:intron
AAACTTTGTCTGATCCTTCA+AGG 0.443921 4_4:-71751673 Msa0700620:CDS
GAGAGAGAGATGCGTTGTTA+CGG 0.451601 4_4:-71752016 Msa0700620:exon
GATGAAGCGATAATCGCTTC+CGG 0.453064 4_4:+71751982 None:intergenic
GGATGTTTCACCACCGGATC+GGG 0.463368 4_4:-71751741 Msa0700620:CDS
CCCGAATGAGATTCGGGTCA+TGG 0.464892 4_4:+71751910 None:intergenic
CTCGAATACGCCAGCAGAGG+GGG 0.466457 4_4:-71748576 Msa0700620:CDS
TTATTAGGTGAGTGAACAAA+AGG 0.466965 4_4:-71748695 Msa0700620:intron
CCATGACCCGAATCTCATTC+GGG 0.467417 4_4:-71751910 Msa0700620:CDS
TCATACATAATCCTCCTTGA+AGG 0.468151 4_4:+71751659 None:intergenic
CGGAGCTTCTACGATCTTCT+GGG 0.475758 4_4:-71751833 Msa0700620:CDS
CAAGAGGTTTATTCAGGTGC+AGG 0.475899 4_4:-71751705 Msa0700620:CDS
TGAGTGAACAAAAGGATGAA+TGG 0.478243 4_4:-71748687 Msa0700620:CDS
CGGGTCATGGGTATGGTGGT+GGG 0.482731 4_4:+71751923 None:intergenic
CAACGACGGCGTTGTGGCGG+AGG 0.487062 4_4:-71751858 Msa0700620:CDS
GATTATGTATGATAGAGATA+TGG 0.488939 4_4:-71751648 Msa0700620:CDS
AGTGAAGGAGGAGGTAGTGT+TGG 0.495639 4_4:+71751956 None:intergenic
TGAGATTCGGGTCATGGGTA+TGG 0.497946 4_4:+71751916 None:intergenic
GGGTATGGTGGTGGGTCGGA+AGG 0.500342 4_4:+71751931 None:intergenic
CGATCCGGTGGTGAAACATC+CGG 0.500626 4_4:+71751743 None:intergenic
GGCTCGAATACGCCAGCAGA+GGG 0.500705 4_4:-71748578 Msa0700620:CDS
GTATACTCTTCCACCCGATC+CGG 0.515930 4_4:+71751728 None:intergenic
TCGAATACGCCAGCAGAGGG+GGG 0.524687 4_4:-71748575 Msa0700620:CDS
GATCCGGTGGTGAAACATCC+GGG 0.526103 4_4:+71751744 None:intergenic
CCGAATGAGATTCGGGTCAT+GGG 0.531452 4_4:+71751911 None:intergenic
AAGAAGTGATAGCAAGGTCA+TGG 0.532505 4_4:-71748626 Msa0700620:CDS
CTTCTGGGCATACCAGAATC+CGG 0.533025 4_4:-71751818 Msa0700620:CDS
CGAATACGCCAGCAGAGGGG+GGG 0.536867 4_4:-71748574 Msa0700620:CDS
CGGATGTTTCACCACCGGAT+CGG 0.539387 4_4:-71751742 Msa0700620:CDS
CTTAAAGCCACCTTCAACGA+CGG 0.544649 4_4:-71751872 Msa0700620:CDS
CGGAAGGACAGTGAAGGAGG+AGG 0.549643 4_4:+71751947 None:intergenic
CTGCACCTGAATAAACCTCT+TGG 0.549933 4_4:+71751706 None:intergenic
TCATGGGTATGGTGGTGGGT+CGG 0.552227 4_4:+71751927 None:intergenic
CGGCTCGAATACGCCAGCAG+AGG 0.554435 4_4:-71748579 Msa0700620:CDS
CACCTTCAACGACGGCGTTG+TGG 0.564399 4_4:-71751864 Msa0700620:CDS
GGTGGCTTTAAGCTTTGGGA+AGG 0.570592 4_4:+71751883 None:intergenic
ACGGCGTTGTGGCGGAGGAA+CGG 0.572751 4_4:-71751853 Msa0700620:CDS
TGCTGCTGATAATACGTCAT+GGG 0.573906 4_4:-71748602 Msa0700620:CDS
CACAACGCCGTCGTTGAAGG+TGG 0.575442 4_4:+71751865 None:intergenic
CTTCAACGACGGCGTTGTGG+CGG 0.582226 4_4:-71751861 Msa0700620:CDS
TTTATTATAATCACTCCACT+TGG 0.582304 4_4:-71748342 Msa0700620:three_prime_UTR
GGTCGGAAGGACAGTGAAGG+AGG 0.583185 4_4:+71751944 None:intergenic
TGTTACGGCTTAACAATCCC+CGG 0.585898 4_4:-71752001 Msa0700620:CDS
TACTCTTCCACCCGATCCGG+TGG 0.594060 4_4:+71751731 None:intergenic
AGGATGAATGGAAATCTCGT+TGG 0.596088 4_4:-71748675 Msa0700620:CDS
GAAGAGAAGAAGTGATAGCA+AGG 0.602140 4_4:-71748632 Msa0700620:CDS
GAGGTTTATTCAGGTGCAGG+AGG 0.604858 4_4:-71751702 Msa0700620:CDS
TGTTTCACCACCGGATCGGG+TGG 0.605740 4_4:-71751738 Msa0700620:CDS
ATGATAGAGATATGGCTAGA+GGG 0.609573 4_4:-71751640 Msa0700620:CDS
CGTTGGCAATCTCAACTCGA+TGG 0.610624 4_4:-71748658 Msa0700620:CDS
GTGGGTCGGAAGGACAGTGA+AGG 0.611080 4_4:+71751941 None:intergenic
GATTCGGGTCATGGGTATGG+TGG 0.612358 4_4:+71751919 None:intergenic
GCTCGAATACGCCAGCAGAG+GGG 0.614172 4_4:-71748577 Msa0700620:CDS
TATGATAGAGATATGGCTAG+AGG 0.622164 4_4:-71751641 Msa0700620:CDS
CCCCAGAAAACAAAACCAAG+TGG 0.632711 4_4:+71748327 None:intergenic
TCACCCGGATGTTTCACCAC+CGG 0.635031 4_4:-71751747 Msa0700620:CDS
TGCTGATAATACGTCATGGG+CGG 0.647620 4_4:-71748599 Msa0700620:CDS
CTTTGTCTGATCCTTCAAGG+AGG 0.657466 4_4:-71751670 Msa0700620:CDS
ATGCTGCTGATAATACGTCA+TGG 0.662327 4_4:-71748603 Msa0700620:CDS
TGAAGCGATAATCGCTTCCG+GGG 0.671244 4_4:+71751984 None:intergenic
ATTATACACATAGAGAACAA+AGG 0.681965 4_4:+71748534 None:intergenic
ACTTGCAAGAAAGTATCACC+CGG 0.704249 4_4:-71751762 Msa0700620:CDS
GGGTGGAAGAGTATACCAAG+AGG 0.760271 4_4:-71751721 Msa0700620:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATGAAATATAAGAAAAAA+TGG + chr4_4:71748891-71748910 None:intergenic 10.0%
!! GTTATTAATTATTATTTGTT+AGG - chr4_4:71749506-71749525 Msa0700620:intron 10.0%
!! GAATATATTATAAATTGTTT+CGG + chr4_4:71750746-71750765 None:intergenic 10.0%
!! AGAAAAAATATAATTGATTA+TGG + chr4_4:71750882-71750901 None:intergenic 10.0%
!!! TAATCAATTATATTTTTTCT+TGG - chr4_4:71750882-71750901 Msa0700620:intron 10.0%
!!! ATTTTTATTTTTCATTGAAT+AGG - chr4_4:71751647-71751666 Msa0700620:CDS 10.0%
!!! TTTGATTTTTTTTCTTCTTA+TGG - chr4_4:71748914-71748933 Msa0700620:intron 15.0%
!!! TTGATTTTTTTTCTTCTTAT+GGG - chr4_4:71748915-71748934 Msa0700620:intron 15.0%
!!! TTTATGTTGATTTTTTGTTT+TGG - chr4_4:71748986-71749005 Msa0700620:intron 15.0%
!!! TTTTTGAACTTTTATATGAT+TGG - chr4_4:71749101-71749120 Msa0700620:intron 15.0%
!!! ATTTGATTTATACATACTAT+CGG + chr4_4:71749151-71749170 None:intergenic 15.0%
!! CTTATAATGAAATAAAAAAC+AGG - chr4_4:71750765-71750784 Msa0700620:intron 15.0%
!! AAATATAATTGATTATGGAA+GGG + chr4_4:71750877-71750896 None:intergenic 15.0%
!! AAAATATAATTGATTATGGA+AGG + chr4_4:71750878-71750897 None:intergenic 15.0%
!! GATTGTTAAGAAATTTAAAA+TGG - chr4_4:71751164-71751183 Msa0700620:intron 15.0%
!!! GACAACTTTTTAATAATAAT+TGG - chr4_4:71751225-71751244 Msa0700620:intron 15.0%
!! NNNNNNNNNTCAAAAGAGAT+AGG - chr4_4:71751546-71751565 Msa0700620:intron 15.0%
!! NNNNNNNNTCAAAAGAGATA+GGG - chr4_4:71751547-71751566 Msa0700620:intron 15.0%
!! CTTGTTTAGAAAAAAAAAAA+TGG - chr4_4:71752030-71752049 Msa0700620:five_prime_UTR 15.0%
!!! TGATTTTTTTTCTTCTTATG+GGG - chr4_4:71748916-71748935 Msa0700620:intron 20.0%
!!! GTTTATGTTTGTTATTGTTA+TGG - chr4_4:71749048-71749067 Msa0700620:intron 20.0%
!! TGTTAAAGAGTTAATTGATA+TGG - chr4_4:71749076-71749095 Msa0700620:intron 20.0%
!!! TTGTCAAGTTATATCATTTT+TGG - chr4_4:71749174-71749193 Msa0700620:intron 20.0%
!! TTGCTTAAAAATAGCATATA+TGG - chr4_4:71749837-71749856 Msa0700620:intron 20.0%
!!! ATGTTAATATTAGTTTTGCT+TGG - chr4_4:71749867-71749886 Msa0700620:intron 20.0%
!!! TGTTAATATTAGTTTTGCTT+GGG - chr4_4:71749868-71749887 Msa0700620:intron 20.0%
!!! ATAAATTGTAAACTTTTCAG+GGG + chr4_4:71750085-71750104 None:intergenic 20.0%
!!! CATAAATTGTAAACTTTTCA+GGG + chr4_4:71750086-71750105 None:intergenic 20.0%
!!! TCATAAATTGTAAACTTTTC+AGG + chr4_4:71750087-71750106 None:intergenic 20.0%
!!! TAAATTTTGATTACATGACA+TGG - chr4_4:71750175-71750194 Msa0700620:intron 20.0%
!!! AAATTATTTTCCTACTGATT+TGG - chr4_4:71750373-71750392 Msa0700620:intron 20.0%
!!! CAGTTTTTTGTGATAAAAAA+TGG + chr4_4:71750616-71750635 None:intergenic 20.0%
!! TTACTTTGATTCTTCTTAAA+AGG + chr4_4:71750670-71750689 None:intergenic 20.0%
!!! AGTTGTTTTAAATGTTAAGT+TGG - chr4_4:71751077-71751096 Msa0700620:intron 20.0%
!!! ATCGTCATTATTTATTGATT+GGG + chr4_4:71751319-71751338 None:intergenic 20.0%
!! TATCGTCATTATTTATTGAT+TGG + chr4_4:71751320-71751339 None:intergenic 20.0%
!! TAAGTTATTGCTTTCTTATT+AGG - chr4_4:71751726-71751745 Msa0700620:CDS 20.0%
!! TTCTAAACAAGTAAACTATA+TGG + chr4_4:71752021-71752040 None:intergenic 20.0%
! GATTATGTATGATAGAGATA+TGG - chr4_4:71748788-71748807 Msa0700620:intron 25.0%
! AATAAGCTGAAAATAGCTTA+TGG - chr4_4:71749315-71749334 Msa0700620:intron 25.0%
!!! TATTTTTTTCTCCCTTTTTG+AGG - chr4_4:71749530-71749549 Msa0700620:intron 25.0%
! ACAAATTACAACCTCAAAAA+GGG + chr4_4:71749544-71749563 None:intergenic 25.0%
! AACAAATTACAACCTCAAAA+AGG + chr4_4:71749545-71749564 None:intergenic 25.0%
! AAAGCTTCTCAAACAAAAAA+AGG + chr4_4:71749631-71749650 None:intergenic 25.0%
!!! TTTTTTGTTTGAGAAGCTTT+TGG - chr4_4:71749631-71749650 Msa0700620:intron 25.0%
! TACCATGCAAAATCAATTTA+AGG + chr4_4:71749721-71749740 None:intergenic 25.0%
!!! TCCTTAAATTGATTTTGCAT+GGG - chr4_4:71749717-71749736 Msa0700620:intron 25.0%
! ACATTAATAATTGAAGAGCT+TGG - chr4_4:71750044-71750063 Msa0700620:intron 25.0%
! TTACAATTTATGACTGAAAC+CGG - chr4_4:71750094-71750113 Msa0700620:intron 25.0%
! TTGATATATATTTGCTCCTA+AGG + chr4_4:71750402-71750421 None:intergenic 25.0%
! GAGCAAATATATATCAAAAC+CGG - chr4_4:71750405-71750424 Msa0700620:intron 25.0%
!!! GGAGTATCGAAATATTTTAA+GGG - chr4_4:71750435-71750454 Msa0700620:intron 25.0%
!!! GAGTATCGAAATATTTTAAG+GGG - chr4_4:71750436-71750455 Msa0700620:intron 25.0%
!!! AGTATCGAAATATTTTAAGG+GGG - chr4_4:71750437-71750456 Msa0700620:intron 25.0%
! ATTTGTTTAATCATGACTTC+TGG - chr4_4:71750466-71750485 Msa0700620:intron 25.0%
!! CTCTTAGGTTCAAATATTTT+AGG - chr4_4:71750540-71750559 Msa0700620:intron 25.0%
! TTAAACTAATCACATAATCC+AGG - chr4_4:71751129-71751148 Msa0700620:intron 25.0%
! TTAAAATGGTAAGTTTGTCT+TGG - chr4_4:71751178-71751197 Msa0700620:intron 25.0%
! ATAATATAATCCCTGAATGA+TGG - chr4_4:71751417-71751436 Msa0700620:intron 25.0%
! ATTATACACATAGAGAACAA+AGG + chr4_4:71751905-71751924 None:intergenic 25.0%
!!! CAAAGAGACACATTTTTTTT+TGG + chr4_4:71752060-71752079 None:intergenic 25.0%
! TTTATTATAATCACTCCACT+TGG - chr4_4:71752094-71752113 Msa0700620:five_prime_UTR 25.0%
TTTGATATCCATCAATGAAC+CGG + chr4_4:71748640-71748659 None:intergenic 30.0%
ATGCTATAATCATTCTGATC+AGG - chr4_4:71748845-71748864 Msa0700620:intron 30.0%
TACATACTATCGGTGTAAAA+AGG + chr4_4:71749141-71749160 None:intergenic 30.0%
! ACTGTTTTCATAAGCTATTC+TGG - chr4_4:71749280-71749299 Msa0700620:intron 30.0%
TTATTGTGCAACTTCTTTGT+TGG - chr4_4:71749590-71749609 Msa0700620:intron 30.0%
!! GTCCTTAAATTGATTTTGCA+TGG - chr4_4:71749716-71749735 Msa0700620:intron 30.0%
AACACAAGAATCATCTATGA+TGG + chr4_4:71749777-71749796 None:intergenic 30.0%
!! GTCCTTAAATTGATTTTGCA+TGG - chr4_4:71749716-71749735 Msa0700620:intron 30.0%
!! CCTTAAATTGATTTTGCATG+GGG - chr4_4:71749718-71749737 Msa0700620:intron 30.0%
! AGTTAGTTTGATGTAGAACT+TGG + chr4_4:71749909-71749928 None:intergenic 30.0%
TACAATTTATGACTGAAACC+GGG - chr4_4:71750095-71750114 Msa0700620:intron 30.0%
TGTGGTTTCATCATCATTTA+AGG - chr4_4:71750198-71750217 Msa0700620:intron 30.0%
ATATATCAAAACCGGATTGT+AGG - chr4_4:71750413-71750432 Msa0700620:intron 30.0%
TATATCAAAACCGGATTGTA+GGG - chr4_4:71750414-71750433 Msa0700620:intron 30.0%
!!! GGGAGTATCGAAATATTTTA+AGG - chr4_4:71750434-71750453 Msa0700620:intron 30.0%
ATTTGAACCTAAGAGAAAGA+AGG + chr4_4:71750535-71750554 None:intergenic 30.0%
TTAGGATGATGAAACACTTT+AGG - chr4_4:71750558-71750577 Msa0700620:intron 30.0%
GAAATAAAAAACAGGCAACT+TGG - chr4_4:71750773-71750792 Msa0700620:intron 30.0%
AGCAAAATGTCTTCAAGAAA+AGG + chr4_4:71750927-71750946 None:intergenic 30.0%
TTGCTTGTATGAGTATGTTA+CGG - chr4_4:71750942-71750961 Msa0700620:intron 30.0%
CACACAAAAGGAAATGAATA+TGG + chr4_4:71750994-71751013 None:intergenic 30.0%
TGATTCATTACCATCATTCA+GGG + chr4_4:71751430-71751449 None:intergenic 30.0%
ATGATTCATTACCATCATTC+AGG + chr4_4:71751431-71751450 None:intergenic 30.0%
! TTTTCATTGAATAGGACCTT+TGG - chr4_4:71751655-71751674 Msa0700620:CDS 30.0%
TTTCATTGAATAGGACCTTT+GGG - chr4_4:71751656-71751675 Msa0700620:CDS 30.0%
TTATTAGGTGAGTGAACAAA+AGG - chr4_4:71751741-71751760 Msa0700620:CDS 30.0%
GTATACCAAGAGGTTTATTC+AGG - chr4_4:71748725-71748744 Msa0700620:intron 35.0%
AAACTTTGTCTGATCCTTCA+AGG - chr4_4:71748763-71748782 Msa0700620:intron 35.0%
TCATACATAATCCTCCTTGA+AGG + chr4_4:71748780-71748799 None:intergenic 35.0%
TATGATAGAGATATGGCTAG+AGG - chr4_4:71748795-71748814 Msa0700620:intron 35.0%
ATGATAGAGATATGGCTAGA+GGG - chr4_4:71748796-71748815 Msa0700620:intron 35.0%
AAAACAATGAAGGGTCACTT+TGG + chr4_4:71749424-71749443 None:intergenic 35.0%
! ACCCTTCATTGTTTTCATCT+GGG - chr4_4:71749429-71749448 Msa0700620:intron 35.0%
TCCCAGATGAAAACAATGAA+GGG + chr4_4:71749433-71749452 None:intergenic 35.0%
! TTCATTGTTTTCATCTGGGA+GGG - chr4_4:71749433-71749452 Msa0700620:intron 35.0%
! TTTGTCAAGGTTCTGATTTG+TGG - chr4_4:71749460-71749479 Msa0700620:intron 35.0%
! TCTCATGTTTTGTCAGTGTA+TGG - chr4_4:71749564-71749583 Msa0700620:intron 35.0%
! ATGCTCTTTTTACACCATCA+TGG - chr4_4:71749675-71749694 Msa0700620:intron 35.0%
AACACAAGAATCATCCATGA+TGG + chr4_4:71749692-71749711 None:intergenic 35.0%
ATGGTATCTCAAGCAAGTTT+AGG - chr4_4:71749735-71749754 Msa0700620:intron 35.0%
CCCCATGCAAAATCAATTTA+AGG + chr4_4:71749806-71749825 None:intergenic 35.0%
CATTTGAAGAAGACTCATCA+AGG - chr4_4:71750018-71750037 Msa0700620:intron 35.0%
!! TTATTTTGCAGTGGAAAACC+CGG + chr4_4:71750116-71750135 None:intergenic 35.0%
!!! CAGATTAGCTTATTTTGCAG+TGG + chr4_4:71750125-71750144 None:intergenic 35.0%
TTTGATTACATGACATGGTG+TGG - chr4_4:71750180-71750199 Msa0700620:intron 35.0%
AAGCTTTCACAGAACTGAAA+TGG - chr4_4:71750300-71750319 Msa0700620:intron 35.0%
!! TTCTGGTTCCTGATATTTAC+TGG - chr4_4:71750483-71750502 Msa0700620:intron 35.0%
ATCAAGCACCAGTAAATATC+AGG + chr4_4:71750494-71750513 None:intergenic 35.0%
!! AGTACATTTTAAGTGTGCTG+TGG - chr4_4:71750714-71750733 Msa0700620:intron 35.0%
AAAAACAGGCAACTTGGTTT+AGG - chr4_4:71750779-71750798 Msa0700620:intron 35.0%
AAAACAGGCAACTTGGTTTA+GGG - chr4_4:71750780-71750799 Msa0700620:intron 35.0%
!! GTGTAACTGACTTACGTTTT+GGG - chr4_4:71750802-71750821 Msa0700620:intron 35.0%
CGTTGACATATACACACAAA+AGG + chr4_4:71751006-71751025 None:intergenic 35.0%
!! AGTAACTTGTTCAGTGTTTG+TGG + chr4_4:71751046-71751065 None:intergenic 35.0%
ACAATCAGAAAACAACATCC+TGG + chr4_4:71751150-71751169 None:intergenic 35.0%
TTCATTGAATAGGACCTTTG+GGG - chr4_4:71751657-71751676 Msa0700620:CDS 35.0%
TGAGTGAACAAAAGGATGAA+TGG - chr4_4:71751749-71751768 Msa0700620:CDS 35.0%
!! TGAAGGTGGCTTTAAGCTTT+GGG + chr4_4:71748560-71748579 None:intergenic 40.0%
!! TTGAAGGTGGCTTTAAGCTT+TGG + chr4_4:71748561-71748580 None:intergenic 40.0%
!! ACTTGCAAGAAAGTATCACC+CGG - chr4_4:71748674-71748693 Msa0700620:CDS 40.0%
! GACCCTTCATTGTTTTCATC+TGG - chr4_4:71749428-71749447 Msa0700620:intron 40.0%
CTCCCAGATGAAAACAATGA+AGG + chr4_4:71749434-71749453 None:intergenic 40.0%
! CTTCATTGTTTTCATCTGGG+AGG - chr4_4:71749432-71749451 Msa0700620:intron 40.0%
TTAAGGCTTCCTCCTTATCT+TGG - chr4_4:71750215-71750234 Msa0700620:intron 40.0%
ATTGAATTGCGACCACAATG+TGG + chr4_4:71750243-71750262 None:intergenic 40.0%
CCTAAGGTAACCAAATCAGT+AGG + chr4_4:71750386-71750405 None:intergenic 40.0%
!! CCTACTGATTTGGTTACCTT+AGG - chr4_4:71750383-71750402 Msa0700620:intron 40.0%
TTTCGATACTCCCTACAATC+CGG + chr4_4:71750427-71750446 None:intergenic 40.0%
GAAAGAAGGAGATAGCACAA+AGG + chr4_4:71750521-71750540 None:intergenic 40.0%
GCTATCTCCTTCTTTCTCTT+AGG - chr4_4:71750525-71750544 Msa0700620:intron 40.0%
!! GGTGTAACTGACTTACGTTT+TGG - chr4_4:71750801-71750820 Msa0700620:intron 40.0%
! AACTTGTTCAGTGTTTGTGG+TGG + chr4_4:71751043-71751062 None:intergenic 40.0%
TCATTGAATAGGACCTTTGG+GGG - chr4_4:71751658-71751677 Msa0700620:CDS 40.0%
AGGATGAATGGAAATCTCGT+TGG - chr4_4:71751761-71751780 Msa0700620:CDS 40.0%
TGCTATCACTTCTTCTCTTC+AGG + chr4_4:71751804-71751823 None:intergenic 40.0%
GAAGAGAAGAAGTGATAGCA+AGG - chr4_4:71751804-71751823 Msa0700620:CDS 40.0%
AAGAAGTGATAGCAAGGTCA+TGG - chr4_4:71751810-71751829 Msa0700620:CDS 40.0%
ATGCTGCTGATAATACGTCA+TGG - chr4_4:71751833-71751852 Msa0700620:CDS 40.0%
TGCTGCTGATAATACGTCAT+GGG - chr4_4:71751834-71751853 Msa0700620:CDS 40.0%
GAGAGAGAGATGCGTTGTTA+CGG - chr4_4:71748420-71748439 Msa0700620:three_prime_UTR 45.0%
TGTTACGGCTTAACAATCCC+CGG - chr4_4:71748435-71748454 Msa0700620:three_prime_UTR 45.0%
ATGAAGCGATAATCGCTTCC+GGG + chr4_4:71748456-71748475 None:intergenic 45.0%
GATGAAGCGATAATCGCTTC+CGG + chr4_4:71748457-71748476 None:intergenic 45.0%
AGGATGACCCGAATGAGATT+CGG + chr4_4:71748536-71748555 None:intergenic 45.0%
CTTAAAGCCACCTTCAACGA+CGG - chr4_4:71748564-71748583 Msa0700620:exon 45.0%
ACCAGAATCCGGTTCATTGA+TGG - chr4_4:71748629-71748648 Msa0700620:CDS 45.0%
TCCATCAATGAACCGGATTC+TGG + chr4_4:71748633-71748652 None:intergenic 45.0%
CTGCACCTGAATAAACCTCT+TGG + chr4_4:71748733-71748752 None:intergenic 45.0%
CAAGAGGTTTATTCAGGTGC+AGG - chr4_4:71748731-71748750 Msa0700620:intron 45.0%
CTTTGTCTGATCCTTCAAGG+AGG - chr4_4:71748766-71748785 Msa0700620:intron 45.0%
AATGTGGAGCCAAGATAAGG+AGG + chr4_4:71750227-71750246 None:intergenic 45.0%
CACAATGTGGAGCCAAGATA+AGG + chr4_4:71750230-71750249 None:intergenic 45.0%
CTTATCTTGGCTCCACATTG+TGG - chr4_4:71750228-71750247 Msa0700620:intron 45.0%
CATTGAATAGGACCTTTGGG+GGG - chr4_4:71751659-71751678 Msa0700620:CDS 45.0%
TGCTGATAATACGTCATGGG+CGG - chr4_4:71751837-71751856 Msa0700620:CDS 45.0%
!!! TTAATAAATTTTCATAATTT+TGG + chr4_4:71750268-71750287 None:intergenic 5.0%
!! TATAATAAAATTAAACAAAA+TGG + chr4_4:71752083-71752102 None:intergenic 5.0%
TGAAGCGATAATCGCTTCCG+GGG + chr4_4:71748455-71748474 None:intergenic 50.0%
AGTGAAGGAGGAGGTAGTGT+TGG + chr4_4:71748483-71748502 None:intergenic 50.0%
TGAGATTCGGGTCATGGGTA+TGG + chr4_4:71748523-71748542 None:intergenic 50.0%
CCGAATGAGATTCGGGTCAT+GGG + chr4_4:71748528-71748547 None:intergenic 50.0%
CCCATGACCCGAATCTCATT+CGG - chr4_4:71748525-71748544 Msa0700620:three_prime_UTR 50.0%
CCATGACCCGAATCTCATTC+GGG - chr4_4:71748526-71748545 Msa0700620:three_prime_UTR 50.0%
GGATGACCCGAATGAGATTC+GGG + chr4_4:71748535-71748554 None:intergenic 50.0%
!! GGTGGCTTTAAGCTTTGGGA+AGG + chr4_4:71748556-71748575 None:intergenic 50.0%
ACGGAGCTTCTACGATCTTC+TGG - chr4_4:71748602-71748621 Msa0700620:CDS 50.0%
CGGAGCTTCTACGATCTTCT+GGG - chr4_4:71748603-71748622 Msa0700620:CDS 50.0%
CTTCTGGGCATACCAGAATC+CGG - chr4_4:71748618-71748637 Msa0700620:CDS 50.0%
GTATACTCTTCCACCCGATC+CGG + chr4_4:71748711-71748730 None:intergenic 50.0%
! GGGTGGAAGAGTATACCAAG+AGG - chr4_4:71748715-71748734 Msa0700620:intron 50.0%
GAGGTTTATTCAGGTGCAGG+AGG - chr4_4:71748734-71748753 Msa0700620:intron 50.0%
!! CTGGGAGGGTTGATTTGTCA+AGG - chr4_4:71749447-71749466 Msa0700620:intron 50.0%
! AGTGTTTGTGGTGGTGAGCT+GGG + chr4_4:71751034-71751053 None:intergenic 50.0%
! AATAGGACCTTTGGGGGGAT+TGG - chr4_4:71751664-71751683 Msa0700620:CDS 50.0%
CGTTGGCAATCTCAACTCGA+TGG - chr4_4:71751778-71751797 Msa0700620:CDS 50.0%
!! TCATGGGTATGGTGGTGGGT+CGG + chr4_4:71748512-71748531 None:intergenic 55.0%
GATTCGGGTCATGGGTATGG+TGG + chr4_4:71748520-71748539 None:intergenic 55.0%
CCCGAATGAGATTCGGGTCA+TGG + chr4_4:71748529-71748548 None:intergenic 55.0%
TCACCCGGATGTTTCACCAC+CGG - chr4_4:71748689-71748708 Msa0700620:CDS 55.0%
GATCCGGTGGTGAAACATCC+GGG + chr4_4:71748695-71748714 None:intergenic 55.0%
CGATCCGGTGGTGAAACATC+CGG + chr4_4:71748696-71748715 None:intergenic 55.0%
CGGATGTTTCACCACCGGAT+CGG - chr4_4:71748694-71748713 Msa0700620:intron 55.0%
GGATGTTTCACCACCGGATC+GGG - chr4_4:71748695-71748714 Msa0700620:intron 55.0%
! CAGTGTTTGTGGTGGTGAGC+TGG + chr4_4:71751035-71751054 None:intergenic 55.0%
CTTCTAGCCAATCCCCCCAA+AGG + chr4_4:71751674-71751693 None:intergenic 55.0%
CGGAAGGACAGTGAAGGAGG+AGG + chr4_4:71748492-71748511 None:intergenic 60.0%
GGTCGGAAGGACAGTGAAGG+AGG + chr4_4:71748495-71748514 None:intergenic 60.0%
GTGGGTCGGAAGGACAGTGA+AGG + chr4_4:71748498-71748517 None:intergenic 60.0%
CGGGTCATGGGTATGGTGGT+GGG + chr4_4:71748516-71748535 None:intergenic 60.0%
TCGGGTCATGGGTATGGTGG+TGG + chr4_4:71748517-71748536 None:intergenic 60.0%
CACAACGCCGTCGTTGAAGG+TGG + chr4_4:71748574-71748593 None:intergenic 60.0%
CACCTTCAACGACGGCGTTG+TGG - chr4_4:71748572-71748591 Msa0700620:CDS 60.0%
CTTCAACGACGGCGTTGTGG+CGG - chr4_4:71748575-71748594 Msa0700620:CDS 60.0%
TGTTTCACCACCGGATCGGG+TGG - chr4_4:71748698-71748717 Msa0700620:intron 60.0%
TACTCTTCCACCCGATCCGG+TGG + chr4_4:71748708-71748727 None:intergenic 60.0%
GGCTCGAATACGCCAGCAGA+GGG - chr4_4:71751858-71751877 Msa0700620:CDS 60.0%
GCTCGAATACGCCAGCAGAG+GGG - chr4_4:71751859-71751878 Msa0700620:CDS 60.0%
CTCGAATACGCCAGCAGAGG+GGG - chr4_4:71751860-71751879 Msa0700620:CDS 60.0%
TCGAATACGCCAGCAGAGGG+GGG - chr4_4:71751861-71751880 Msa0700620:CDS 60.0%
!! GGGTATGGTGGTGGGTCGGA+AGG + chr4_4:71748508-71748527 None:intergenic 65.0%
CGCCACAACGCCGTCGTTGA+AGG + chr4_4:71748577-71748596 None:intergenic 65.0%
! ACGGCGTTGTGGCGGAGGAA+CGG - chr4_4:71748583-71748602 Msa0700620:CDS 65.0%
CGGCTCGAATACGCCAGCAG+AGG - chr4_4:71751857-71751876 Msa0700620:CDS 65.0%
CGAATACGCCAGCAGAGGGG+GGG - chr4_4:71751862-71751881 Msa0700620:CDS 65.0%
GTCACAATCCCCCCCTCTGC+TGG + chr4_4:71751873-71751892 None:intergenic 65.0%
CAACGACGGCGTTGTGGCGG+AGG - chr4_4:71748578-71748597 Msa0700620:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 71748330 71752128 71748330 ID=Msa0700620;Name=Msa0700620
chr4_4 mRNA 71748330 71752128 71748330 ID=Msa0700620-mRNA-1;Parent=Msa0700620;Name=Msa0700620-mRNA-1;_AED=0.00;_eAED=0.00;_QI=99|1|1|1|1|1|2|237|193
chr4_4 exon 71748330 71748710 71748330 ID=Msa0700620-mRNA-1:exon:21855;Parent=Msa0700620-mRNA-1
chr4_4 exon 71751592 71752128 71751592 ID=Msa0700620-mRNA-1:exon:21854;Parent=Msa0700620-mRNA-1
chr4_4 five_prime_UTR 71752030 71752128 71752030 ID=Msa0700620-mRNA-1:five_prime_utr;Parent=Msa0700620-mRNA-1
chr4_4 CDS 71751592 71752029 71751592 ID=Msa0700620-mRNA-1:cds;Parent=Msa0700620-mRNA-1
chr4_4 CDS 71748567 71748710 71748567 ID=Msa0700620-mRNA-1:cds;Parent=Msa0700620-mRNA-1
chr4_4 three_prime_UTR 71748330 71748566 71748330 ID=Msa0700620-mRNA-1:three_prime_utr;Parent=Msa0700620-mRNA-1
Gene Sequence

>Msa0700620

ATGCGTTGTTACGGCTTAACAATCCCCGGAAGCGATTATCGCTTCATCACACCAACACTACCTCCTCCTTCACTGTCCTTCCGACCCACCACCATACCCATGACCCGAATCTCATTCGGGTCATCCTTCCCAAAGCTTAAAGCCACCTTCAACGACGGCGTTGTGGCGGAGGAACGGAGCTTCTACGATCTTCTGGGCATACCAGAATCCGGTTCATTGATGGATATCAAAAGCGCTTATAAACAACTTGCAAGAAAGTATCACCCGGATGTTTCACCACCGGATCGGGTGGAAGAGTATACCAAGAGGTTTATTCAGGTGCAGGAGGCGTATGAAACTTTGTCTGATCCTTCAAGGAGGATTATGTATGATAGAGATATGGCTAGAGGGATTCATCTTGCTTTCAATGCTCGTAAATGCTATAATCATTCTGATCAGGTGAGTGAACAAAAGGATGAATGGAAATCTCGTTGGCAATCTCAACTCGATGGCCTGAAGAGAAGAAGTGATAGCAAGGTCATGGATGCTGCTGATAATACGTCATGGGCGGCTCGAATACGCCAGCAGAGGGGGGGATTGTGA

Protein sequence

>Msa0700620

MRCYGLTIPGSDYRFITPTLPPPSLSFRPTTIPMTRISFGSSFPKLKATFNDGVVAEERSFYDLLGIPESGSLMDIKSAYKQLARKYHPDVSPPDRVEEYTKRFIQVQEAYETLSDPSRRIMYDRDMARGIHLAFNARKCYNHSDQVSEQKDEWKSRWQSQLDGLKRRSDSKVMDAADNTSWAARIRQQRGGL*