AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0700820

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0700820 MtrunA17_Chr8g0378741 85.650 446 31 6 14 445 1 427 0.0 747
Msa0700820 MtrunA17_Chr4g0063281 45.455 253 105 4 14 233 1 253 1.00e-62 207
Msa0700820 MtrunA17_Chr7g0237691 42.180 211 91 3 54 233 19 229 9.58e-49 170
Msa0700820 MtrunA17_Chr3g0115161 43.367 196 103 3 47 242 36 223 5.25e-47 164
Msa0700820 MtrunA17_Chr4g0051231 44.324 185 88 3 54 233 46 220 4.49e-46 164
Msa0700820 MtrunA17_Chr1g0148061 41.053 190 92 4 56 242 23 195 8.90e-44 155
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0700820 AT1G68140.1 43.204 206 90 4 32 233 22 204 3.07e-50 174
Msa0700820 AT1G68140.4 43.204 206 90 4 32 233 22 204 3.07e-50 174
Msa0700820 AT1G68140.3 43.204 206 90 4 32 233 22 204 3.07e-50 174
Msa0700820 AT1G68140.2 43.204 206 90 4 32 233 22 204 3.14e-50 173
Msa0700820 AT3G24740.3 41.346 208 92 3 54 233 19 224 3.74e-47 166
Msa0700820 AT3G24740.1 41.346 208 92 3 54 233 19 224 3.74e-47 166
Msa0700820 AT3G24740.5 41.346 208 92 3 54 233 19 224 3.74e-47 166
Msa0700820 AT3G24740.6 41.346 208 92 3 54 233 19 224 3.74e-47 166
Msa0700820 AT3G24740.2 41.346 208 92 3 54 233 19 224 3.74e-47 166
Msa0700820 AT3G24740.4 41.346 208 92 3 54 233 19 224 3.74e-47 166
Msa0700820 AT4G08460.4 36.967 211 103 2 32 242 20 200 1.35e-44 157
Msa0700820 AT4G08460.1 36.967 211 103 2 32 242 20 200 1.35e-44 157
Msa0700820 AT4G08460.2 36.967 211 103 2 32 242 20 200 1.35e-44 157
Msa0700820 AT4G08460.3 36.967 211 103 2 32 242 20 200 1.35e-44 157
Msa0700820 AT4G31410.1 42.246 187 88 2 56 242 29 195 6.86e-44 156
Msa0700820 AT4G31410.2 42.246 187 88 2 56 242 29 195 6.86e-44 156
Msa0700820 AT4G31410.3 42.246 187 88 2 56 242 29 195 6.86e-44 156
Msa0700820 AT1G77770.3 39.683 189 82 1 54 242 24 180 8.26e-37 136
Msa0700820 AT1G77770.2 39.683 189 82 1 54 242 24 180 8.26e-37 136
Msa0700820 AT1G77770.1 39.683 189 82 1 54 242 24 180 8.30e-37 136
Msa0700820 AT1G80220.1 37.981 208 95 4 32 238 19 193 1.47e-36 135
Msa0700820 AT1G15430.1 37.430 179 80 1 51 229 43 189 6.07e-36 134
Msa0700820 AT1G15430.2 37.430 179 80 1 51 229 43 189 6.07e-36 134
Msa0700820 AT3G25910.1 56.818 88 38 0 146 233 173 260 3.59e-27 112
Msa0700820 AT3G25910.1 55.682 88 34 3 14 101 1 83 5.50e-22 97.4
Msa0700820 AT2G26050.1 35.673 171 69 5 81 249 38 169 1.61e-23 99.0

Find 140 sgRNAs with CRISPR-Local

Find 277 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTTCACCTTTATAATATA+TGG 0.200001 4_4:+71987610 None:intergenic
CATCATTTCTTTGGATGATT+TGG 0.208773 4_4:-71987578 Msa0700820:three_prime_UTR
GACCTGCCTAGACCTAATTT+TGG 0.218036 4_4:-71988931 Msa0700820:CDS
CTGTCATGTGATGGCATTCT+AGG 0.252643 4_4:+71988058 None:intergenic
ATCATGTAACATCATTTCTT+TGG 0.265997 4_4:-71987587 Msa0700820:three_prime_UTR
TTCTGAGACGTGTGAGTTCC+AGG 0.270482 4_4:-71988521 Msa0700820:CDS
GATCGCCCTCTTCTAACTTT+TGG 0.272975 4_4:+71989009 None:intergenic
AGCTTATCTGCCCTCTTTGC+CGG 0.288827 4_4:-71988615 Msa0700820:CDS
TATGATTTCTCTGATTAGTA+TGG 0.296233 4_4:+71987981 None:intergenic
CTCCATGTCGCCTGAGGCTT+TGG 0.298490 4_4:-71988326 Msa0700820:CDS
TCATCAGCCGATCCAAAATT+AGG 0.307268 4_4:+71988919 None:intergenic
TCGTCCTGTACTGGCATTCT+AGG 0.308700 4_4:+71988235 None:intergenic
CTTTGCCGGGGAGGAATATA+TGG 0.311985 4_4:-71988601 Msa0700820:CDS
TTTCCTTCCATATATTATAA+AGG 0.313781 4_4:-71987617 Msa0700820:three_prime_UTR
GACCAATTCTGTAAGTTGTT+TGG 0.314018 4_4:-71988757 Msa0700820:CDS
CCACATTGGGAGGGGTTCCC+AGG 0.321346 4_4:+71988655 None:intergenic
AGATTGTTGAGAATTATTAT+AGG 0.325072 4_4:-71987868 Msa0700820:CDS
CGTGAAATTTACTCTGTTGA+AGG 0.340333 4_4:-71988292 Msa0700820:CDS
AACCAAACAACTTACAGAAT+TGG 0.341143 4_4:+71988755 None:intergenic
CAAAGGTTGGATAGAATATA+TGG 0.344974 4_4:+71987454 None:intergenic
TCTTCGTCTAGAAGGATTCC+TGG 0.365511 4_4:-71987761 Msa0700820:CDS
GCAACAATTCTTCGTCTAGA+AGG 0.368682 4_4:-71987769 Msa0700820:CDS
TGAGGAATTTCCATGCAAAT+AGG 0.372859 4_4:+71988868 None:intergenic
GATTGTTGAGAATTATTATA+GGG 0.372981 4_4:-71987867 Msa0700820:CDS
CTAGCATGCTTCCGAAGTTC+TGG 0.373276 4_4:+71988490 None:intergenic
GGGAGGAATATATGGATATA+TGG 0.377337 4_4:-71988593 Msa0700820:CDS
ATTCTGATGGACAAAATATC+TGG 0.378474 4_4:-71987671 Msa0700820:three_prime_UTR
TTGCAGCTTGCTCCCACATT+GGG 0.386248 4_4:+71988642 None:intergenic
GCTTATCTGCCCTCTTTGCC+GGG 0.394644 4_4:-71988614 Msa0700820:CDS
ACATGTGCAATACCAGTTAC+AGG 0.404371 4_4:-71988795 Msa0700820:CDS
GATCAAACATTTCGCCTTCA+AGG 0.419238 4_4:-71987904 Msa0700820:CDS
ACAGTTGGAGTGCCTGTAAC+TGG 0.422118 4_4:+71988783 None:intergenic
GTTGCAGCTTGCTCCCACAT+TGG 0.424476 4_4:+71988641 None:intergenic
GCTTGCTCCCACATTGGGAG+GGG 0.424566 4_4:+71988647 None:intergenic
AATACACCCAATGCCGTTGC+TGG 0.425129 4_4:+71988181 None:intergenic
CAAGAACAGTCTCTCATGAT+AGG 0.427443 4_4:-71988693 Msa0700820:CDS
CTGTTGAAGGCAACACTGAC+TGG 0.428366 4_4:-71988279 Msa0700820:CDS
GTTGAAGATGTTCTGACCCT+GGG 0.432531 4_4:+71987836 None:intergenic
CAGCTTGCTCCCACATTGGG+AGG 0.432690 4_4:+71988645 None:intergenic
CAAAGAGGGCAGATAAGCTT+TGG 0.436235 4_4:+71988619 None:intergenic
CACATGCCAGCAACGGCATT+GGG 0.446199 4_4:-71988187 Msa0700820:CDS
TAATCTCTCATCAGCAATGC+TGG 0.447552 4_4:-71988731 Msa0700820:CDS
TTTCTTTGGATGATTTGGTT+CGG 0.454919 4_4:-71987573 Msa0700820:three_prime_UTR
AGGAAAGCTCAGTCAGAGCC+TGG 0.456396 4_4:-71988673 Msa0700820:CDS
GAAGTTCTGGATATGTGCCC+TGG 0.457469 4_4:+71988503 None:intergenic
CATTTGCGTTGGCGCAATCA+AGG 0.461043 4_4:-71987734 Msa0700820:CDS
AGCTTGCTCCCACATTGGGA+GGG 0.461937 4_4:+71988646 None:intergenic
CGGCTGATGAAATGAAAGAA+TGG 0.463244 4_4:-71988906 Msa0700820:CDS
TTCAGAAGAACAGTGTTATG+AGG 0.469509 4_4:+71988850 None:intergenic
TGTTGAAGATGTTCTGACCC+TGG 0.476149 4_4:+71987835 None:intergenic
TGACTGTGAGGCATCCTTGA+AGG 0.477107 4_4:+71987890 None:intergenic
AATGTTTGATCTCCTCCATC+TGG 0.477364 4_4:+71987916 None:intergenic
CAGAACTTCGGAAGCATGCT+AGG 0.478633 4_4:-71988489 Msa0700820:CDS
TCAGACCATTCGTCCTGTAC+TGG 0.478756 4_4:+71988226 None:intergenic
ATCCGTCACGTCAGTATGAC+TGG 0.478839 4_4:-71988432 Msa0700820:CDS
TTGCTCCGGGGATTAGTATG+AGG 0.480173 4_4:+71987788 None:intergenic
TGAAAGAATGGGATGATACT+AGG 0.484698 4_4:-71988894 Msa0700820:CDS
AGACGAAGAATTGTTGCTCC+GGG 0.485667 4_4:+71987775 None:intergenic
ATCTCCTCCATCTGGCCATA+CGG 0.487420 4_4:+71987924 None:intergenic
CACGTCAGTATGACTGGCTT+AGG 0.489771 4_4:-71988426 Msa0700820:CDS
ACTTCGGAAGCATGCTAGGC+TGG 0.496290 4_4:-71988485 Msa0700820:CDS
GAAATGTTCTTCTTATGAGA+AGG 0.497789 4_4:-71988830 Msa0700820:CDS
AAATCGTCAACTTCAAAGGT+TGG 0.498041 4_4:+71987441 None:intergenic
CTGTTGAAGAGGACACTGAC+TGG 0.499351 4_4:-71988111 Msa0700820:CDS
ATCCACTGCAATCTATAGAC+GGG 0.499760 4_4:+71988986 None:intergenic
TAGACGAAGAATTGTTGCTC+CGG 0.501598 4_4:+71987774 None:intergenic
ATCAATGCAAGTTCTGATGC+AGG 0.502570 4_4:-71988364 Msa0700820:CDS
TAACTGGTATTGCACATGTA+AGG 0.507897 4_4:+71988799 None:intergenic
AATCAGAGAAATCATAGAGC+TGG 0.517760 4_4:-71987974 Msa0700820:CDS
GGCAAAATCGTCAACTTCAA+AGG 0.518861 4_4:+71987437 None:intergenic
CGCCAACGCAAATGACTACC+AGG 0.519090 4_4:+71987743 None:intergenic
GTCAGTGTCCTCTTCAACAG+AGG 0.523359 4_4:+71988114 None:intergenic
CAGTTCATATACCTTCGAGC+AGG 0.523725 4_4:+71988562 None:intergenic
AAATGTTCTTCTTATGAGAA+GGG 0.527142 4_4:-71988829 Msa0700820:CDS
TGACTGGCTTAGGATGGAAC+AGG 0.527505 4_4:-71988416 Msa0700820:CDS
GACAAATCCCTCTGTTGAAG+AGG 0.528060 4_4:-71988122 Msa0700820:CDS
GGCTGATGAAATGAAAGAAT+GGG 0.532713 4_4:-71988905 Msa0700820:CDS
ATCCAAAATTAGGTCTAGGC+AGG 0.539299 4_4:+71988929 None:intergenic
GCCGATCCAAAATTAGGTCT+AGG 0.539538 4_4:+71988925 None:intergenic
TCACCTTTATAATATATGGA+AGG 0.541694 4_4:+71987614 None:intergenic
GACCAAAGCCTCAGGCGACA+TGG 0.546964 4_4:+71988324 None:intergenic
AGCGGCACTATATATTCTGA+TGG 0.548275 4_4:-71987684 Msa0700820:three_prime_UTR
AAGACAAGGACCAAAGCCTC+AGG 0.548439 4_4:+71988316 None:intergenic
ATATTCCTCCCCGGCAAAGA+GGG 0.551581 4_4:+71988605 None:intergenic
ACAGAATTGGTCAAGACAGT+TGG 0.553443 4_4:+71988768 None:intergenic
TATATAGTGCCGCTCATGGT+AGG 0.554276 4_4:+71987693 None:intergenic
TACTAGGTGTCCTATTTGCA+TGG 0.556087 4_4:-71988878 Msa0700820:CDS
ACTTCTGTTGGTCGAACAGA+AGG 0.556174 4_4:+71988457 None:intergenic
TCAGATCTTCTGTCATGTGA+TGG 0.556270 4_4:+71988049 None:intergenic
TGCGTTGGCGCAATCAAGGA+TGG 0.556290 4_4:-71987730 Msa0700820:CDS
ATCTGCCCTCTTTGCCGGGG+AGG 0.556924 4_4:-71988610 Msa0700820:CDS
CATCAAACCGTATGGCCAGA+TGG 0.560005 4_4:-71987931 Msa0700820:CDS
ATTATAGGGAGGTGATCCCC+AGG 0.566423 4_4:-71987853 Msa0700820:CDS
AAGACCTAGAATGCCAGTAC+AGG 0.568320 4_4:-71988239 Msa0700820:CDS
TTCCTGGTAGTCATTTGCGT+TGG 0.569500 4_4:-71987745 Msa0700820:CDS
TCTGAGACGTGTGAGTTCCA+GGG 0.570045 4_4:-71988520 Msa0700820:CDS
TGTTGAGAATTATTATAGGG+AGG 0.570988 4_4:-71987864 Msa0700820:CDS
CTCAATACACATGCCAGCAA+CGG 0.571505 4_4:-71988194 Msa0700820:CDS
GATCCACTGCAATCTATAGA+CGG 0.572827 4_4:+71988985 None:intergenic
ACACATGCCAGCAACGGCAT+TGG 0.573673 4_4:-71988188 Msa0700820:CDS
AATATATGGATATATGGTAT+CGG 0.574652 4_4:-71988587 Msa0700820:CDS
TGAGAGACTGTTCTTGTGAG+AGG 0.578777 4_4:+71988700 None:intergenic
CTGGGAACCCCTCCCAATGT+GGG 0.579374 4_4:-71988654 Msa0700820:CDS
GAAGATCTGAAACTATGCAC+AGG 0.579647 4_4:-71988036 Msa0700820:CDS
AGAATATATAGTGCCGCTCA+TGG 0.581117 4_4:+71987689 None:intergenic
GCTTAGGATGGAACAGGAGA+GGG 0.582897 4_4:-71988410 Msa0700820:CDS
TCAGTATGACTGGCTTAGGA+TGG 0.586046 4_4:-71988422 Msa0700820:CDS
TATATTCCTCCCCGGCAAAG+AGG 0.588855 4_4:+71988604 None:intergenic
CCTGGGAACCCCTCCCAATG+TGG 0.594503 4_4:-71988655 Msa0700820:CDS
TCTGTTATCATCAAACCGTA+TGG 0.599538 4_4:-71987939 Msa0700820:CDS
AGTAAATTTCACGCAAGACA+AGG 0.602544 4_4:+71988302 None:intergenic
AGCCAGTCATACTGACGTGA+CGG 0.602653 4_4:+71988430 None:intergenic
AAGTTCCTCATACTAATCCC+CGG 0.610437 4_4:-71987793 Msa0700820:CDS
GGAAAGCTCAGTCAGAGCCT+GGG 0.610751 4_4:-71988672 Msa0700820:CDS
TATATCCATATATTCCTCCC+CGG 0.613171 4_4:+71988596 None:intergenic
GAATGCCAGTACAGGACGAA+TGG 0.613508 4_4:-71988231 Msa0700820:CDS
AAAATGCCAAAAGTTAGAAG+AGG 0.615473 4_4:-71989015 Msa0700820:CDS
AGGGCACATATCCAGAACTT+CGG 0.616895 4_4:-71988501 Msa0700820:CDS
TCAGTGTCCTCTTCAACAGA+GGG 0.619430 4_4:+71988115 None:intergenic
CTTATCTGCCCTCTTTGCCG+GGG 0.619909 4_4:-71988613 Msa0700820:CDS
AAATGCCAAAAGTTAGAAGA+GGG 0.621615 4_4:-71989014 Msa0700820:CDS
GGCTTAGGATGGAACAGGAG+AGG 0.624851 4_4:-71988411 Msa0700820:CDS
TGGTATTGCACATGTAAGGT+CGG 0.627971 4_4:+71988803 None:intergenic
TATTGTCTGAAACAATACAC+AGG 0.629983 4_4:-71988162 Msa0700820:CDS
CGTGACGGATCTACTTCTGT+TGG 0.634856 4_4:+71988445 None:intergenic
AGAAGACTCCATGTCGCCTG+AGG 0.636611 4_4:-71988332 Msa0700820:CDS
TCCCCGTCTATAGATTGCAG+TGG 0.644333 4_4:-71988988 Msa0700820:CDS
TTCTCAACAATCTGACTGTG+AGG 0.645033 4_4:+71987878 None:intergenic
TGGTATCGGAACCTGCTCGA+AGG 0.647070 4_4:-71988573 Msa0700820:CDS
TTGAAGATGTTCTGACCCTG+GGG 0.655818 4_4:+71987837 None:intergenic
ATTCGATAGCCTACCATGAG+CGG 0.673791 4_4:-71987702 Msa0700820:exon
GACGAAGAATTGTTGCTCCG+GGG 0.676645 4_4:+71987776 None:intergenic
CAAACCGTATGGCCAGATGG+AGG 0.687172 4_4:-71987928 Msa0700820:CDS
TGAGGAACTTGTGAAACTCG+AGG 0.687477 4_4:+71987806 None:intergenic
GGGTCAGAACATCTTCAACA+AGG 0.687489 4_4:-71987832 Msa0700820:CDS
TTATAGGGAGGTGATCCCCA+GGG 0.689176 4_4:-71987852 Msa0700820:CDS
AAGATCTGAAACTATGCACA+GGG 0.691379 4_4:-71988035 Msa0700820:CDS
TCCACTGCAATCTATAGACG+GGG 0.695910 4_4:+71988987 None:intergenic
ACAGGGTATCAAATGATACA+CGG 0.702872 4_4:-71988018 Msa0700820:CDS
ATTGTCTGAAACAATACACA+GGG 0.727300 4_4:-71988161 Msa0700820:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAATAAAAAACTTCT+TGG + chr4_4:71990429-71990448 None:intergenic 10.0%
!!! TTTTTAATTGTTTGTAGATT+TGG - chr4_4:71989005-71989024 Msa0700820:CDS 15.0%
!! AATTTCACCTTTATAATATA+TGG + chr4_4:71990461-71990480 None:intergenic 15.0%
!! AATATAACTGAACTAAAAGT+AGG + chr4_4:71987819-71987838 None:intergenic 20.0%
!!! GTTTTATTTCTTTGTACTTT+AGG - chr4_4:71987860-71987879 Msa0700820:CDS 20.0%
!!! TATTCATAAGGATGTATTTT+TGG - chr4_4:71988267-71988286 Msa0700820:CDS 20.0%
!!! ATTCATAAGGATGTATTTTT+GGG - chr4_4:71988268-71988287 Msa0700820:CDS 20.0%
!! TTATTTGCAGACAATATTTA+AGG + chr4_4:71988521-71988540 None:intergenic 20.0%
!!! AAAAGGTTTGTTTATATTTG+AGG + chr4_4:71988752-71988771 None:intergenic 20.0%
!!! AATGAAAAAGATTGTGTTTT+TGG + chr4_4:71988783-71988802 None:intergenic 20.0%
!! AAGAGTTATAAGACAAAAAA+GGG - chr4_4:71988882-71988901 Msa0700820:CDS 20.0%
!! AATATATGGATATATGGTAT+CGG - chr4_4:71989481-71989500 Msa0700820:intron 20.0%
!! AGATTGTTGAGAATTATTAT+AGG - chr4_4:71990200-71990219 Msa0700820:intron 20.0%
!! GATTGTTGAGAATTATTATA+GGG - chr4_4:71990201-71990220 Msa0700820:intron 20.0%
!! TTTCCTTCCATATATTATAA+AGG - chr4_4:71990451-71990470 Msa0700820:intron 20.0%
!!! TCCTACATTTTGTTTTTTAA+TGG - chr4_4:71990559-71990578 Msa0700820:intron 20.0%
!! TCCATTAAAAAACAAAATGT+AGG + chr4_4:71990563-71990582 None:intergenic 20.0%
! GTAAGACAATCATATTCAAT+GGG + chr4_4:71987490-71987509 None:intergenic 25.0%
! ATTTATACTCTTAACGAATG+AGG + chr4_4:71987713-71987732 None:intergenic 25.0%
!!! TTCTGTTTTTCATTCTGTTA+TGG - chr4_4:71987761-71987780 Msa0700820:CDS 25.0%
!!! TTCATAAGGATGTATTTTTG+GGG - chr4_4:71988269-71988288 Msa0700820:CDS 25.0%
! AACATAAATACAGAACCAAA+AGG + chr4_4:71988358-71988377 None:intergenic 25.0%
! TGTTTGCTTATATTCATTGA+AGG - chr4_4:71988401-71988420 Msa0700820:CDS 25.0%
! CAAGAGTTATAAGACAAAAA+AGG - chr4_4:71988881-71988900 Msa0700820:CDS 25.0%
! CACTGTTATTGAATTATGAT+CGG - chr4_4:71988960-71988979 Msa0700820:CDS 25.0%
!!! TTTGTAGATTTGGTTTTAAG+CGG - chr4_4:71989015-71989034 Msa0700820:CDS 25.0%
! AAATGTTCTTCTTATGAGAA+GGG - chr4_4:71989239-71989258 Msa0700820:intron 25.0%
! GGTATATGAACTGTAAAAAA+AGG - chr4_4:71989516-71989535 Msa0700820:intron 25.0%
! TATGATTTCTCTGATTAGTA+TGG + chr4_4:71990090-71990109 None:intergenic 25.0%
! TCACCTTTATAATATATGGA+AGG + chr4_4:71990457-71990476 None:intergenic 25.0%
! ATCATGTAACATCATTTCTT+TGG - chr4_4:71990481-71990500 Msa0700820:intron 25.0%
GGTAAGACAATCATATTCAA+TGG + chr4_4:71987491-71987510 None:intergenic 30.0%
! TGTCAATTCAAACCCTTTTA+AGG - chr4_4:71987732-71987751 Msa0700820:CDS 30.0%
! GTCAATTCAAACCCTTTTAA+GGG - chr4_4:71987733-71987752 Msa0700820:CDS 30.0%
ACAGAACATTACCCTTAAAA+GGG + chr4_4:71987747-71987766 None:intergenic 30.0%
AACAGAACATTACCCTTAAA+AGG + chr4_4:71987748-71987767 None:intergenic 30.0%
TTATTAAGTATGCTGATCTC+TGG - chr4_4:71987891-71987910 Msa0700820:CDS 30.0%
!!! ATTTTTAGTCATTGCAACAG+CGG - chr4_4:71988164-71988183 Msa0700820:CDS 30.0%
TAACAACGTAGGTATTCATA+AGG - chr4_4:71988255-71988274 Msa0700820:CDS 30.0%
! TTCTATATAGTTGTGCCTTT+TGG - chr4_4:71988340-71988359 Msa0700820:CDS 30.0%
! ATACTAGTTCTTGTATTGCA+TGG - chr4_4:71988450-71988469 Msa0700820:CDS 30.0%
GAAAACTAAAGTTTCAGACT+TGG + chr4_4:71988479-71988498 None:intergenic 30.0%
!!! GAAATTCAGTTTTGAGGTTT+CGG - chr4_4:71988566-71988585 Msa0700820:CDS 30.0%
!!! TGTTTTTGGTGAAGATGAAA+AGG + chr4_4:71988769-71988788 None:intergenic 30.0%
AGTTATAAGACAAAAAAGGG+AGG - chr4_4:71988885-71988904 Msa0700820:CDS 30.0%
GTTATAAGACAAAAAAGGGA+GGG - chr4_4:71988886-71988905 Msa0700820:CDS 30.0%
AAAATGCCAAAAGTTAGAAG+AGG - chr4_4:71989053-71989072 Msa0700820:intron 30.0%
AAATGCCAAAAGTTAGAAGA+GGG - chr4_4:71989054-71989073 Msa0700820:intron 30.0%
!! TTTTTGGAGATGAAAGGATA+GGG + chr4_4:71989113-71989132 None:intergenic 30.0%
!! ATTTTTGGAGATGAAAGGAT+AGG + chr4_4:71989114-71989133 None:intergenic 30.0%
!! TCAAGATTTTTGGAGATGAA+AGG + chr4_4:71989119-71989138 None:intergenic 30.0%
GAAATGTTCTTCTTATGAGA+AGG - chr4_4:71989238-71989257 Msa0700820:intron 30.0%
AACCAAACAACTTACAGAAT+TGG + chr4_4:71989316-71989335 None:intergenic 30.0%
! TATTGTCTGAAACAATACAC+AGG - chr4_4:71989906-71989925 Msa0700820:intron 30.0%
! ATTGTCTGAAACAATACACA+GGG - chr4_4:71989907-71989926 Msa0700820:intron 30.0%
TGTTGAGAATTATTATAGGG+AGG - chr4_4:71990204-71990223 Msa0700820:intron 30.0%
! ATTCTGATGGACAAAATATC+TGG - chr4_4:71990397-71990416 Msa0700820:intron 30.0%
CATCATTTCTTTGGATGATT+TGG - chr4_4:71990490-71990509 Msa0700820:intron 30.0%
!! TTTCTTTGGATGATTTGGTT+CGG - chr4_4:71990495-71990514 Msa0700820:intron 30.0%
CAAAGGTTGGATAGAATATA+TGG + chr4_4:71990617-71990636 None:intergenic 30.0%
!! TGATTTGTTGCATAACTGGT+AGG + chr4_4:71987447-71987466 None:intergenic 35.0%
!! CAGATGATTTGTTGCATAAC+TGG + chr4_4:71987451-71987470 None:intergenic 35.0%
!! TTACCTTTTAGAGAGAGCTT+TGG - chr4_4:71987506-71987525 Msa0700820:three_prime_UTR 35.0%
AATCCAAAGCTCTCTCTAAA+AGG + chr4_4:71987512-71987531 None:intergenic 35.0%
ACTACAACCACTATTGTTGA+CGG + chr4_4:71987629-71987648 None:intergenic 35.0%
!! AGCGGACTTGATATTGATTT+GGG + chr4_4:71987668-71987687 None:intergenic 35.0%
!! TAGCGGACTTGATATTGATT+TGG + chr4_4:71987669-71987688 None:intergenic 35.0%
TCAATATCAAGTCCGCTATT+AGG - chr4_4:71987671-71987690 Msa0700820:three_prime_UTR 35.0%
CAATATCAAGTCCGCTATTA+GGG - chr4_4:71987672-71987691 Msa0700820:three_prime_UTR 35.0%
AATATCAAGTCCGCTATTAG+GGG - chr4_4:71987673-71987692 Msa0700820:three_prime_UTR 35.0%
!! TCATTCTGTTATGGTCTTGT+TGG - chr4_4:71987770-71987789 Msa0700820:CDS 35.0%
! TGTACCGCTATAGTTTTCTA+GGG - chr4_4:71988203-71988222 Msa0700820:CDS 35.0%
ATACCTACGTTGTTAATCCT+AGG + chr4_4:71988250-71988269 None:intergenic 35.0%
!!! AGGATGTATTTTTGGGGTTT+AGG - chr4_4:71988275-71988294 Msa0700820:CDS 35.0%
!!! ATGTATTTTTGGGGTTTAGG+AGG - chr4_4:71988278-71988297 Msa0700820:CDS 35.0%
CACAAGGTACATAAAACACA+AGG + chr4_4:71988547-71988566 None:intergenic 35.0%
CCTCAAAACTGAATTTCACA+AGG + chr4_4:71988563-71988582 None:intergenic 35.0%
! CCTTGTGAAATTCAGTTTTG+AGG - chr4_4:71988560-71988579 Msa0700820:CDS 35.0%
AGGTTTCGGAATCAATTCTA+TGG - chr4_4:71988580-71988599 Msa0700820:CDS 35.0%
TTCTCGCTTAATGTAATGGT+GGG + chr4_4:71988668-71988687 None:intergenic 35.0%
TTTCTCGCTTAATGTAATGG+TGG + chr4_4:71988669-71988688 None:intergenic 35.0%
GCATTTCTCGCTTAATGTAA+TGG + chr4_4:71988672-71988691 None:intergenic 35.0%
CTGAAAAATACACTTGTGCA+TGG - chr4_4:71988691-71988710 Msa0700820:CDS 35.0%
TCTCACATGCAAAAGCAAAA+TGG + chr4_4:71988724-71988743 None:intergenic 35.0%
GTGTATTGCTCAGTTGAATT+AGG - chr4_4:71988858-71988877 Msa0700820:CDS 35.0%
! AGGGAAATGTCATGGTTTTT+AGG - chr4_4:71988905-71988924 Msa0700820:CDS 35.0%
! GGGAAATGTCATGGTTTTTA+GGG - chr4_4:71988906-71988925 Msa0700820:CDS 35.0%
!! GGAAATGTCATGGTTTTTAG+GGG - chr4_4:71988907-71988926 Msa0700820:CDS 35.0%
!! GAAATGTCATGGTTTTTAGG+GGG - chr4_4:71988908-71988927 Msa0700820:CDS 35.0%
GGCTGATGAAATGAAAGAAT+GGG - chr4_4:71989163-71989182 Msa0700820:intron 35.0%
TGAAAGAATGGGATGATACT+AGG - chr4_4:71989174-71989193 Msa0700820:intron 35.0%
TGAGGAATTTCCATGCAAAT+AGG + chr4_4:71989203-71989222 None:intergenic 35.0%
TTCAGAAGAACAGTGTTATG+AGG + chr4_4:71989221-71989240 None:intergenic 35.0%
TAACTGGTATTGCACATGTA+AGG + chr4_4:71989272-71989291 None:intergenic 35.0%
GACCAATTCTGTAAGTTGTT+TGG - chr4_4:71989311-71989330 Msa0700820:intron 35.0%
TATATCCATATATTCCTCCC+CGG + chr4_4:71989475-71989494 None:intergenic 35.0%
GGGAGGAATATATGGATATA+TGG - chr4_4:71989475-71989494 Msa0700820:intron 35.0%
AGTAAATTTCACGCAAGACA+AGG + chr4_4:71989769-71989788 None:intergenic 35.0%
CGTGAAATTTACTCTGTTGA+AGG - chr4_4:71989776-71989795 Msa0700820:intron 35.0%
! AAGATCTGAAACTATGCACA+GGG - chr4_4:71990033-71990052 Msa0700820:intron 35.0%
! ACAGGGTATCAAATGATACA+CGG - chr4_4:71990050-71990069 Msa0700820:intron 35.0%
AATCAGAGAAATCATAGAGC+TGG - chr4_4:71990094-71990113 Msa0700820:intron 35.0%
TCTGTTATCATCAAACCGTA+TGG - chr4_4:71990129-71990148 Msa0700820:intron 35.0%
AAATCGTCAACTTCAAAGGT+TGG + chr4_4:71990630-71990649 None:intergenic 35.0%
TGTCAATCACATCGCTATAG+TGG - chr4_4:71987553-71987572 Msa0700820:three_prime_UTR 40.0%
!! GCGGACTTGATATTGATTTG+GGG + chr4_4:71987667-71987686 None:intergenic 40.0%
! CTGTACCGCTATAGTTTTCT+AGG - chr4_4:71988202-71988221 Msa0700820:CDS 40.0%
! GTACCGCTATAGTTTTCTAG+GGG - chr4_4:71988204-71988223 Msa0700820:CDS 40.0%
! TACCGCTATAGTTTTCTAGG+GGG - chr4_4:71988205-71988224 Msa0700820:CDS 40.0%
CTACCTAGGATTAACAACGT+AGG - chr4_4:71988244-71988263 Msa0700820:CDS 40.0%
AAAAAGGGAGGGAAATGTCA+TGG - chr4_4:71988897-71988916 Msa0700820:CDS 40.0%
ATCCACTGCAATCTATAGAC+GGG + chr4_4:71989085-71989104 None:intergenic 40.0%
GATCCACTGCAATCTATAGA+CGG + chr4_4:71989086-71989105 None:intergenic 40.0%
! TCTAGGCAGGTCAAGATTTT+TGG + chr4_4:71989129-71989148 None:intergenic 40.0%
ATCCAAAATTAGGTCTAGGC+AGG + chr4_4:71989142-71989161 None:intergenic 40.0%
! GCCTAGACCTAATTTTGGAT+CGG - chr4_4:71989142-71989161 Msa0700820:intron 40.0%
TCATCAGCCGATCCAAAATT+AGG + chr4_4:71989152-71989171 None:intergenic 40.0%
CGGCTGATGAAATGAAAGAA+TGG - chr4_4:71989162-71989181 Msa0700820:intron 40.0%
TACTAGGTGTCCTATTTGCA+TGG - chr4_4:71989190-71989209 Msa0700820:intron 40.0%
TGGTATTGCACATGTAAGGT+CGG + chr4_4:71989268-71989287 None:intergenic 40.0%
ACATGTGCAATACCAGTTAC+AGG - chr4_4:71989273-71989292 Msa0700820:intron 40.0%
ACAGAATTGGTCAAGACAGT+TGG + chr4_4:71989303-71989322 None:intergenic 40.0%
TAATCTCTCATCAGCAATGC+TGG - chr4_4:71989337-71989356 Msa0700820:intron 40.0%
CAAGAACAGTCTCTCATGAT+AGG - chr4_4:71989375-71989394 Msa0700820:intron 40.0%
! ATCAATGCAAGTTCTGATGC+AGG - chr4_4:71989704-71989723 Msa0700820:intron 40.0%
TCAGATCTTCTGTCATGTGA+TGG + chr4_4:71990022-71990041 None:intergenic 40.0%
! GAAGATCTGAAACTATGCAC+AGG - chr4_4:71990032-71990051 Msa0700820:intron 40.0%
AATGTTTGATCTCCTCCATC+TGG + chr4_4:71990155-71990174 None:intergenic 40.0%
GATCAAACATTTCGCCTTCA+AGG - chr4_4:71990164-71990183 Msa0700820:intron 40.0%
TTCTCAACAATCTGACTGTG+AGG + chr4_4:71990193-71990212 None:intergenic 40.0%
AAGTTCCTCATACTAATCCC+CGG - chr4_4:71990275-71990294 Msa0700820:intron 40.0%
TAGACGAAGAATTGTTGCTC+CGG + chr4_4:71990297-71990316 None:intergenic 40.0%
GCAACAATTCTTCGTCTAGA+AGG - chr4_4:71990299-71990318 Msa0700820:intron 40.0%
! AGAATATATAGTGCCGCTCA+TGG + chr4_4:71990382-71990401 None:intergenic 40.0%
AGCGGCACTATATATTCTGA+TGG - chr4_4:71990384-71990403 Msa0700820:intron 40.0%
GGCAAAATCGTCAACTTCAA+AGG + chr4_4:71990634-71990653 None:intergenic 40.0%
! GCTATAGTGGAATAGCGTAG+CGG - chr4_4:71987566-71987585 Msa0700820:three_prime_UTR 45.0%
ACAACCACTATTGTTGACGG+TGG + chr4_4:71987626-71987645 None:intergenic 45.0%
GTTGTAGTTGCCGCTAATTG+CGG - chr4_4:71987641-71987660 Msa0700820:three_prime_UTR 45.0%
AAGTCCGCTATTAGGGGTTT+GGG - chr4_4:71987679-71987698 Msa0700820:three_prime_UTR 45.0%
! CTGATCTCTGGTGCCAATTT+CGG - chr4_4:71987903-71987922 Msa0700820:CDS 45.0%
! TGATCTCTGGTGCCAATTTC+GGG - chr4_4:71987904-71987923 Msa0700820:CDS 45.0%
!! GAGCTTGCTCTGGCTTTAAA+CGG - chr4_4:71988026-71988045 Msa0700820:CDS 45.0%
!! AGCTTGCTCTGGCTTTAAAC+GGG - chr4_4:71988027-71988046 Msa0700820:CDS 45.0%
TATAGCGGTACAGCGAATAG+CGG + chr4_4:71988195-71988214 None:intergenic 45.0%
GACCCCCTAGAAAACTATAG+CGG + chr4_4:71988210-71988229 None:intergenic 45.0%
TGTGCTATGCAATGCTACCT+AGG - chr4_4:71988230-71988249 Msa0700820:CDS 45.0%
! CACAAGCGACTTTTCACCTT+CGG - chr4_4:71988632-71988651 Msa0700820:CDS 45.0%
GGTGGGATTTATTGATCCGA+AGG + chr4_4:71988651-71988670 None:intergenic 45.0%
!! TGTCATGGTTTTTAGGGGGT+TGG - chr4_4:71988912-71988931 Msa0700820:CDS 45.0%
! GATCGCCCTCTTCTAACTTT+TGG + chr4_4:71989062-71989081 None:intergenic 45.0%
TCCACTGCAATCTATAGACG+GGG + chr4_4:71989084-71989103 None:intergenic 45.0%
! GACCTGCCTAGACCTAATTT+TGG - chr4_4:71989137-71989156 Msa0700820:intron 45.0%
GCCGATCCAAAATTAGGTCT+AGG + chr4_4:71989146-71989165 None:intergenic 45.0%
TGAGAGACTGTTCTTGTGAG+AGG + chr4_4:71989371-71989390 None:intergenic 45.0%
CAAAGAGGGCAGATAAGCTT+TGG + chr4_4:71989452-71989471 None:intergenic 45.0%
CAGTTCATATACCTTCGAGC+AGG + chr4_4:71989509-71989528 None:intergenic 45.0%
AGGGCACATATCCAGAACTT+CGG - chr4_4:71989567-71989586 Msa0700820:intron 45.0%
ACTTCTGTTGGTCGAACAGA+AGG + chr4_4:71989614-71989633 None:intergenic 45.0%
!! TCAGTATGACTGGCTTAGGA+TGG - chr4_4:71989646-71989665 Msa0700820:intron 45.0%
AAGACCTAGAATGCCAGTAC+AGG - chr4_4:71989829-71989848 Msa0700820:intron 45.0%
CTCAATACACATGCCAGCAA+CGG - chr4_4:71989874-71989893 Msa0700820:intron 45.0%
GACAAATCCCTCTGTTGAAG+AGG - chr4_4:71989946-71989965 Msa0700820:intron 45.0%
TCAGTGTCCTCTTCAACAGA+GGG + chr4_4:71989956-71989975 None:intergenic 45.0%
CTGTCATGTGATGGCATTCT+AGG + chr4_4:71990013-71990032 None:intergenic 45.0%
TTGAAGATGTTCTGACCCTG+GGG + chr4_4:71990234-71990253 None:intergenic 45.0%
GTTGAAGATGTTCTGACCCT+GGG + chr4_4:71990235-71990254 None:intergenic 45.0%
TGTTGAAGATGTTCTGACCC+TGG + chr4_4:71990236-71990255 None:intergenic 45.0%
GGGTCAGAACATCTTCAACA+AGG - chr4_4:71990236-71990255 Msa0700820:intron 45.0%
TGAGGAACTTGTGAAACTCG+AGG + chr4_4:71990265-71990284 None:intergenic 45.0%
AGACGAAGAATTGTTGCTCC+GGG + chr4_4:71990296-71990315 None:intergenic 45.0%
TCTTCGTCTAGAAGGATTCC+TGG - chr4_4:71990307-71990326 Msa0700820:intron 45.0%
TTCCTGGTAGTCATTTGCGT+TGG - chr4_4:71990323-71990342 Msa0700820:intron 45.0%
ATTCGATAGCCTACCATGAG+CGG - chr4_4:71990366-71990385 Msa0700820:intron 45.0%
! TATATAGTGCCGCTCATGGT+AGG + chr4_4:71990378-71990397 None:intergenic 45.0%
!! AAAAATAATAATAATAATGA+GGG + chr4_4:71988829-71988848 None:intergenic 5.0%
!! AAAAAATAATAATAATAATG+AGG + chr4_4:71988830-71988849 None:intergenic 5.0%
! ATAGTGGAATAGCGTAGCGG+TGG - chr4_4:71987569-71987588 Msa0700820:three_prime_UTR 50.0%
! TGATTTGGGGCCGCAATTAG+CGG + chr4_4:71987654-71987673 None:intergenic 50.0%
CAAGTCCGCTATTAGGGGTT+TGG - chr4_4:71987678-71987697 Msa0700820:three_prime_UTR 50.0%
TCGTCCCAAACCCCTAATAG+CGG + chr4_4:71987686-71987705 None:intergenic 50.0%
! GATCTCTGGTGCCAATTTCG+GGG - chr4_4:71987905-71987924 Msa0700820:CDS 50.0%
! ATTCCCTCCGGTGCCAATTT+CGG - chr4_4:71987986-71988005 Msa0700820:CDS 50.0%
TGGACTTAGCCCACCGAAAT+TGG + chr4_4:71988002-71988021 None:intergenic 50.0%
! AGTCCATACAGAGCTTGCTC+TGG - chr4_4:71988016-71988035 Msa0700820:CDS 50.0%
AAGCCAGAGCAAGCTCTGTA+TGG + chr4_4:71988022-71988041 None:intergenic 50.0%
!! GCTTGCTCTGGCTTTAAACG+GGG - chr4_4:71988028-71988047 Msa0700820:CDS 50.0%
AAACTCAATCCGCCCACTTG+CGG + chr4_4:71988058-71988077 None:intergenic 50.0%
GGTGAAAAGTCGCTTGTGCA+TGG + chr4_4:71988630-71988649 None:intergenic 50.0%
TCCCCGTCTATAGATTGCAG+TGG - chr4_4:71989080-71989099 Msa0700820:intron 50.0%
! ACAGTTGGAGTGCCTGTAAC+TGG + chr4_4:71989288-71989307 None:intergenic 50.0%
! TTGCAGCTTGCTCCCACATT+GGG + chr4_4:71989429-71989448 None:intergenic 50.0%
AGCTTATCTGCCCTCTTTGC+CGG - chr4_4:71989453-71989472 Msa0700820:intron 50.0%
ATATTCCTCCCCGGCAAAGA+GGG + chr4_4:71989466-71989485 None:intergenic 50.0%
TATATTCCTCCCCGGCAAAG+AGG + chr4_4:71989467-71989486 None:intergenic 50.0%
CTTTGCCGGGGAGGAATATA+TGG - chr4_4:71989467-71989486 Msa0700820:intron 50.0%
!! TTCTGAGACGTGTGAGTTCC+AGG - chr4_4:71989547-71989566 Msa0700820:intron 50.0%
! TCTGAGACGTGTGAGTTCCA+GGG - chr4_4:71989548-71989567 Msa0700820:intron 50.0%
!! GAAGTTCTGGATATGTGCCC+TGG + chr4_4:71989568-71989587 None:intergenic 50.0%
CTAGCATGCTTCCGAAGTTC+TGG + chr4_4:71989581-71989600 None:intergenic 50.0%
! CAGAACTTCGGAAGCATGCT+AGG - chr4_4:71989579-71989598 Msa0700820:intron 50.0%
!! CGTGACGGATCTACTTCTGT+TGG + chr4_4:71989626-71989645 None:intergenic 50.0%
ATCCGTCACGTCAGTATGAC+TGG - chr4_4:71989636-71989655 Msa0700820:intron 50.0%
AGCCAGTCATACTGACGTGA+CGG + chr4_4:71989641-71989660 None:intergenic 50.0%
!! CACGTCAGTATGACTGGCTT+AGG - chr4_4:71989642-71989661 Msa0700820:intron 50.0%
!! TGACTGGCTTAGGATGGAAC+AGG - chr4_4:71989652-71989671 Msa0700820:intron 50.0%
GCTTAGGATGGAACAGGAGA+GGG - chr4_4:71989658-71989677 Msa0700820:intron 50.0%
AAGACAAGGACCAAAGCCTC+AGG + chr4_4:71989755-71989774 None:intergenic 50.0%
CTGTTGAAGGCAACACTGAC+TGG - chr4_4:71989789-71989808 Msa0700820:intron 50.0%
! TCGTCCTGTACTGGCATTCT+AGG + chr4_4:71989836-71989855 None:intergenic 50.0%
GAATGCCAGTACAGGACGAA+TGG - chr4_4:71989837-71989856 Msa0700820:intron 50.0%
TCAGACCATTCGTCCTGTAC+TGG + chr4_4:71989845-71989864 None:intergenic 50.0%
AATACACCCAATGCCGTTGC+TGG + chr4_4:71989890-71989909 None:intergenic 50.0%
GTCAGTGTCCTCTTCAACAG+AGG + chr4_4:71989957-71989976 None:intergenic 50.0%
CTGTTGAAGAGGACACTGAC+TGG - chr4_4:71989957-71989976 Msa0700820:intron 50.0%
CATCAAACCGTATGGCCAGA+TGG - chr4_4:71990137-71990156 Msa0700820:intron 50.0%
ATCTCCTCCATCTGGCCATA+CGG + chr4_4:71990147-71990166 None:intergenic 50.0%
! TGACTGTGAGGCATCCTTGA+AGG + chr4_4:71990181-71990200 None:intergenic 50.0%
ATTATAGGGAGGTGATCCCC+AGG - chr4_4:71990215-71990234 Msa0700820:intron 50.0%
TTATAGGGAGGTGATCCCCA+GGG - chr4_4:71990216-71990235 Msa0700820:intron 50.0%
! TTGCTCCGGGGATTAGTATG+AGG + chr4_4:71990283-71990302 None:intergenic 50.0%
GACGAAGAATTGTTGCTCCG+GGG + chr4_4:71990295-71990314 None:intergenic 50.0%
! CATTTGCGTTGGCGCAATCA+AGG - chr4_4:71990334-71990353 Msa0700820:intron 50.0%
TGGAATAGCGTAGCGGTGGT+AGG - chr4_4:71987573-71987592 Msa0700820:three_prime_UTR 55.0%
GGAATAGCGTAGCGGTGGTA+GGG - chr4_4:71987574-71987593 Msa0700820:three_prime_UTR 55.0%
CGAGCCACCGTCAACAATAG+TGG - chr4_4:71987619-71987638 Msa0700820:three_prime_UTR 55.0%
! TCTGGTGCCAATTTCGGGGT+TGG - chr4_4:71987909-71987928 Msa0700820:CDS 55.0%
!! CCAATTTCGGGGTTGGCCTA+GGG - chr4_4:71987916-71987935 Msa0700820:CDS 55.0%
!! CAATTTCGGGGTTGGCCTAG+GGG - chr4_4:71987917-71987936 Msa0700820:CDS 55.0%
AAGATCCCAAGCCAACCCCT+AGG + chr4_4:71987935-71987954 None:intergenic 55.0%
!! TAGGGGTTGGCTTGGGATCT+TGG - chr4_4:71987934-71987953 Msa0700820:CDS 55.0%
! CTTGGAGTTTGCTCCTCCAG+AGG - chr4_4:71987952-71987971 Msa0700820:CDS 55.0%
TTTGCTCCTCCAGAGGTCTC+AGG - chr4_4:71987959-71987978 Msa0700820:CDS 55.0%
ATCGAACCTGAGACCTCTGG+AGG + chr4_4:71987968-71987987 None:intergenic 55.0%
GGAATCGAACCTGAGACCTC+TGG + chr4_4:71987971-71987990 None:intergenic 55.0%
GTCTCAGGTTCGATTCCCTC+CGG - chr4_4:71987974-71987993 Msa0700820:CDS 55.0%
TAGCCCACCGAAATTGGCAC+CGG + chr4_4:71987996-71988015 None:intergenic 55.0%
AACTCAATCCGCCCACTTGC+GGG + chr4_4:71988057-71988076 None:intergenic 55.0%
AGGAAAGCTCAGTCAGAGCC+TGG - chr4_4:71989395-71989414 Msa0700820:intron 55.0%
GGAAAGCTCAGTCAGAGCCT+GGG - chr4_4:71989396-71989415 Msa0700820:intron 55.0%
! AGCTTGCTCCCACATTGGGA+GGG + chr4_4:71989425-71989444 None:intergenic 55.0%
! GTTGCAGCTTGCTCCCACAT+TGG + chr4_4:71989430-71989449 None:intergenic 55.0%
GCTTATCTGCCCTCTTTGCC+GGG - chr4_4:71989454-71989473 Msa0700820:intron 55.0%
CTTATCTGCCCTCTTTGCCG+GGG - chr4_4:71989455-71989474 Msa0700820:intron 55.0%
! TGGTATCGGAACCTGCTCGA+AGG - chr4_4:71989495-71989514 Msa0700820:intron 55.0%
! ACTTCGGAAGCATGCTAGGC+TGG - chr4_4:71989583-71989602 Msa0700820:intron 55.0%
GGCTTAGGATGGAACAGGAG+AGG - chr4_4:71989657-71989676 Msa0700820:intron 55.0%
AGAAGACTCCATGTCGCCTG+AGG - chr4_4:71989736-71989755 Msa0700820:intron 55.0%
ACACATGCCAGCAACGGCAT+TGG - chr4_4:71989880-71989899 Msa0700820:intron 55.0%
CACATGCCAGCAACGGCATT+GGG - chr4_4:71989881-71989900 Msa0700820:intron 55.0%
CAAACCGTATGGCCAGATGG+AGG - chr4_4:71990140-71990159 Msa0700820:intron 55.0%
CGCCAACGCAAATGACTACC+AGG + chr4_4:71990328-71990347 None:intergenic 55.0%
! TGCGTTGGCGCAATCAAGGA+TGG - chr4_4:71990338-71990357 Msa0700820:intron 55.0%
AGCGTAGCGGTGGTAGGGTT+TGG - chr4_4:71987579-71987598 Msa0700820:three_prime_UTR 60.0%
!! GCCAATTTCGGGGTTGGCCT+AGG - chr4_4:71987915-71987934 Msa0700820:CDS 60.0%
CCCTAGGCCAACCCCGAAAT+TGG + chr4_4:71987919-71987938 None:intergenic 60.0%
!! GTTGGCCTAGGGGTTGGCTT+GGG - chr4_4:71987927-71987946 Msa0700820:CDS 60.0%
! CCACCGAAATTGGCACCGGA+GGG + chr4_4:71987992-71988011 None:intergenic 60.0%
! CCTCCGGTGCCAATTTCGGT+GGG - chr4_4:71987990-71988009 Msa0700820:CDS 60.0%
ACTCAATCCGCCCACTTGCG+GGG + chr4_4:71988056-71988075 None:intergenic 60.0%
CTGGGAACCCCTCCCAATGT+GGG - chr4_4:71989414-71989433 Msa0700820:intron 60.0%
GCTTGCTCCCACATTGGGAG+GGG + chr4_4:71989424-71989443 None:intergenic 60.0%
! CAGCTTGCTCCCACATTGGG+AGG + chr4_4:71989426-71989445 None:intergenic 60.0%
CTCCATGTCGCCTGAGGCTT+TGG - chr4_4:71989742-71989761 Msa0700820:intron 60.0%
GACCAAAGCCTCAGGCGACA+TGG + chr4_4:71989747-71989766 None:intergenic 60.0%
!! TTCGGGGTTGGCCTAGGGGT+TGG - chr4_4:71987921-71987940 Msa0700820:CDS 65.0%
!! GGTTGGCCTAGGGGTTGGCT+TGG - chr4_4:71987926-71987945 Msa0700820:CDS 65.0%
! CCCTCCGGTGCCAATTTCGG+TGG - chr4_4:71987989-71988008 Msa0700820:CDS 65.0%
! CCCACCGAAATTGGCACCGG+AGG + chr4_4:71987993-71988012 None:intergenic 65.0%
TCAATCCGCCCACTTGCGGG+GGG + chr4_4:71988054-71988073 None:intergenic 65.0%
CTCAATCCGCCCACTTGCGG+GGG + chr4_4:71988055-71988074 None:intergenic 65.0%
CCACATTGGGAGGGGTTCCC+AGG + chr4_4:71989416-71989435 None:intergenic 65.0%
CCTGGGAACCCCTCCCAATG+TGG - chr4_4:71989413-71989432 Msa0700820:intron 65.0%
ATCTGCCCTCTTTGCCGGGG+AGG - chr4_4:71989458-71989477 Msa0700820:intron 65.0%
TAAACGGGGCCCCCCGCAAG+TGG - chr4_4:71988042-71988061 Msa0700820:CDS 70.0%
AAACGGGGCCCCCCGCAAGT+GGG - chr4_4:71988043-71988062 Msa0700820:CDS 70.0%
! CGGGGCCCCCCGCAAGTGGG+CGG - chr4_4:71988046-71988065 Msa0700820:CDS 85.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 71987437 71990653 71987437 ID=Msa0700820;Name=Msa0700820
chr4_4 mRNA 71987437 71990653 71987437 ID=Msa0700820-mRNA-1;Parent=Msa0700820;Name=Msa0700820-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0.5|0.5|1|1|2|269|455
chr4_4 exon 71987437 71989068 71987437 ID=Msa0700820-mRNA-1:exon:21954;Parent=Msa0700820-mRNA-1
chr4_4 exon 71990649 71990653 71990649 ID=Msa0700820-mRNA-1:exon:21953;Parent=Msa0700820-mRNA-1
chr4_4 CDS 71990649 71990653 71990649 ID=Msa0700820-mRNA-1:cds;Parent=Msa0700820-mRNA-1
chr4_4 CDS 71987706 71989068 71987706 ID=Msa0700820-mRNA-1:cds;Parent=Msa0700820-mRNA-1
chr4_4 three_prime_UTR 71987437 71987705 71987437 ID=Msa0700820-mRNA-1:three_prime_utr;Parent=Msa0700820-mRNA-1
Gene Sequence

>Msa0700820

ATGGAATTTGGTTTTAAGCGGAAACATCACGTCTCAAAAATGCCAAAAGTTAGAAGAGGGCGATCCCCGTCTATAGATTGCAGTGGATCATATCCCTATCCTTTCATCTCCAAAAATCTTGACCTGCCTAGACCTAATTTTGGATCGGCTGATGAAATGAAAGAATGGGATGATACTAGGTGTCCTATTTGCATGGAAATTCCTCATAACACTGTTCTTCTGAAATGTTCTTCTTATGAGAAGGGTTGCCGACCTTACATGTGCAATACCAGTTACAGGCACTCCAACTGTCTTGACCAATTCTGTAAGTTGTTTGGTTCTAATCTCTCATCAGCAATGCTGGAAGCAATTCCTCTCACAAGAACAGTCTCTCATGATAGGAAAGCTCAGTCAGAGCCTGGGAACCCCTCCCAATGTGGGAGCAAGCTGCAACCAAAGCTTATCTGCCCTCTTTGCCGGGGAGGAATATATGGATATATGGTATCGGAACCTGCTCGAAGGTATATGAACTGTAAAAAAAGGAGTTGTTCTTCTGAGACGTGTGAGTTCCAGGGCACATATCCAGAACTTCGGAAGCATGCTAGGCTGGTGCATCCTTCTGTTCGACCAACAGAAGTAGATCCGTCACGTCAGTATGACTGGCTTAGGATGGAACAGGAGAGGGACTTTGAAGATCTTTTTAGCTCAATCAATGCAAGTTCTGATGCAGGATTGAGCAGAGAAGACTCCATGTCGCCTGAGGCTTTGGTCCTTGTCTTGCGTGAAATTTACTCTGTTGAAGGCAACACTGACTGGATTGTGTCTAGTGATTCAAGACCTAGAATGCCAGTACAGGACGAATGGTCTGAAGCAATGCACTCAATACACATGCCAGCAACGGCATTGGGTGTATTGTCTGAAACAATACACAGGGTATCAGATGATACACAGACAAATCCCTCTGTTGAAGAGGACACTGACTGGATCATGTCTAATTTGTTTTCTGATTCAATACCTAGAATGCCATCACATGACAGAAGATCTGAAACTATGCACAGGGTATCAAATGATACACGGACAAATCAATCAAACCATACTAATCAGAGAAATCATAGAGCTGGATCGAGAAATGATCTGTTATCATCAAACCGTATGGCCAGATGGAGGAGATCAAACATTTCGCCTTCAAGGATGCCTCACAGTCAGATTGTTGAGAATTATTATAGGGAGGTGATCCCCAGGGTCAGAACATCTTCAACAAGGATGCCTCGAGTTTCACAAGTTCCTCATACTAATCCCCGGAGCAACAATTCTTCGTCTAGAAGGATTCCTGGTAGTCATTTGCGTTGGCGCAATCAAGGATGGTCGACATTCGATAGCCTACCATGA
Protein sequence

>Msa0700820

MEFGFKRKHHVSKMPKVRRGRSPSIDCSGSYPYPFISKNLDLPRPNFGSADEMKEWDDTRCPICMEIPHNTVLLKCSSYEKGCRPYMCNTSYRHSNCLDQFCKLFGSNLSSAMLEAIPLTRTVSHDRKAQSEPGNPSQCGSKLQPKLICPLCRGGIYGYMVSEPARRYMNCKKRSCSSETCEFQGTYPELRKHARLVHPSVRPTEVDPSRQYDWLRMEQERDFEDLFSSINASSDAGLSREDSMSPEALVLVLREIYSVEGNTDWIVSSDSRPRMPVQDEWSEAMHSIHMPATALGVLSETIHRVSDDTQTNPSVEEDTDWIMSNLFSDSIPRMPSHDRRSETMHRVSNDTRTNQSNHTNQRNHRAGSRNDLLSSNRMARWRRSNISPSRMPHSQIVENYYREVIPRVRTSSTRMPRVSQVPHTNPRSNNSSSRRIPGSHLRWRNQGWSTFDSLP*