AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0701380

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0701380 MtrunA17_Chr8g0379591 99.070 215 2 0 1 215 1 215 2.61e-157 434
Msa0701380 MtrunA17_Chr7g0235941 73.023 215 58 0 1 215 1 215 4.36e-113 322
Msa0701380 MtrunA17_Chr4g0038571 35.526 228 128 9 2 215 47 269 1.45e-27 105
Msa0701380 MtrunA17_Chr8g0339351 35.088 228 130 7 2 214 47 271 2.01e-27 105
Msa0701380 MtrunA17_Chr3g0142691 33.188 229 132 8 2 215 47 269 1.71e-26 102
Msa0701380 MtrunA17_Chr8g0339401 33.974 156 86 6 60 201 6 158 9.65e-18 77.0
Msa0701380 MtrunA17_Chr8g0339421 33.668 199 115 7 30 214 65 260 6.61e-17 77.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0701380 AT1G29330.1 81.860 215 39 0 1 215 1 215 9.67e-134 374
Msa0701380 AT3G25040.1 72.093 215 60 0 1 215 1 215 3.57e-116 330
Msa0701380 AT1G29330.2 84.314 153 24 0 63 215 1 153 2.39e-94 272
Msa0701380 AT3G25160.1 33.921 227 133 5 2 214 48 271 1.42e-28 108
Msa0701380 AT1G19970.1 34.498 229 129 9 2 215 47 269 2.65e-26 102
Msa0701380 AT4G38790.1 33.624 229 131 9 2 215 48 270 1.52e-25 100
Msa0701380 AT2G21190.1 31.878 229 135 9 2 215 44 266 1.65e-25 100
Msa0701380 AT1G75760.1 32.751 229 133 8 2 215 47 269 1.98e-25 100
Msa0701380 AT1G75760.2 34.112 214 121 8 2 201 47 254 6.94e-25 98.6
Msa0701380 AT1G19970.2 35.028 177 104 6 2 173 47 217 2.98e-22 91.3
Msa0701380 AT1G75760.3 33.714 175 105 6 2 171 47 215 6.81e-21 87.4

Find 70 sgRNAs with CRISPR-Local

Find 332 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGTCAATTTCAGATCTTC+TGG 0.214649 4_4:+72804942 Msa0701380:intron
GGGCAATATGTATTCTTTCT+TGG 0.265304 4_4:+72805049 Msa0701380:CDS
TGTGTTCTTAGCACGTTATT+TGG 0.272313 4_4:+72800004 Msa0701380:CDS
AAGTTTATGGTAGCTGATTT+TGG 0.275925 4_4:+72806062 Msa0701380:three_prime_UTR
TGTTGCTGCTAGCTTTCTTC+TGG 0.281140 4_4:+72800178 Msa0701380:CDS
ATTGTATAGTTTGAAGTTTA+TGG 0.301044 4_4:+72806049 Msa0701380:three_prime_UTR
GGCAATATGTATTCTTTCTT+GGG 0.306579 4_4:+72805050 Msa0701380:CDS
TAGAAATTTAGCTCCTTGTT+AGG 0.325336 4_4:+72805795 Msa0701380:three_prime_UTR
ATCTACCCCACTAACGAATA+GGG 0.333242 4_4:-72805878 None:intergenic
CATCTACCCCACTAACGAAT+AGG 0.351469 4_4:-72805879 None:intergenic
TTTCTAGGTAAGGGGTAAAT+GGG 0.357165 4_4:+72805907 Msa0701380:three_prime_UTR
TCTTCTACTATTACTTCATC+AGG 0.375089 4_4:+72805636 Msa0701380:CDS
CATTGTCACTCAGAACTAAT+AGG 0.387006 4_4:+72806174 Msa0701380:three_prime_UTR
CCTCATAGCAATGAAATATC+AGG 0.395146 4_4:+72805955 Msa0701380:three_prime_UTR
GTGGATTATACATTCTCAAT+TGG 0.399809 4_4:+72805440 Msa0701380:CDS
TACGCTACCAAATCATGTTC+AGG 0.407698 4_4:+72799863 Msa0701380:CDS
CTCTGCCCCTATTCGTTAGT+GGG 0.416157 4_4:+72805872 Msa0701380:three_prime_UTR
CTTGTTAGGCGAGTCCCTGC+TGG 0.423244 4_4:+72805809 Msa0701380:three_prime_UTR
ATTGTGACCTGAACATGATT+TGG 0.429861 4_4:-72799870 None:intergenic
TTATAAGTAAGAATTAATTT+CGG 0.433199 4_4:+72806207 Msa0701380:three_prime_UTR
CTTCATAAACGTATTATAAA+CGG 0.434373 4_4:-72800048 None:intergenic
CCTGATATTTCATTGCTATG+AGG 0.447961 4_4:-72805955 None:intergenic
CAATATATCAAAATCGGCAT+TGG 0.451283 4_4:+72806149 Msa0701380:three_prime_UTR
ACTCTGCCCCTATTCGTTAG+TGG 0.463064 4_4:+72805871 Msa0701380:three_prime_UTR
CTAGTTCGTTGGCTATTGTT+TGG 0.468529 4_4:+72800084 Msa0701380:CDS
ACGCACGAAACGCTAATTAC+AGG 0.471025 4_4:-72799708 None:intergenic
ACGTTATTTGGATCTGTTCA+CGG 0.477076 4_4:+72800016 Msa0701380:CDS
AGATTCAGGTCTCCATTCCA+TGG 0.477613 4_4:+72806025 Msa0701380:three_prime_UTR
ATGTCAATTTCAGATCTTCT+GGG 0.481234 4_4:+72804943 Msa0701380:intron
GGAAATGTTGATAATTTGAC+TGG 0.481668 4_4:+72805028 Msa0701380:CDS
GGTTATGATTGAAATGATCA+TGG 0.487252 4_4:+72806083 Msa0701380:three_prime_UTR
TTCATGGTTGCGTTGATCAA+TGG 0.492548 4_4:-72799776 None:intergenic
TTACGCTCTTAAATTCCAGC+AGG 0.498501 4_4:-72805824 None:intergenic
GGCGAGTCTGAAGATGTTCA+TGG 0.501045 4_4:-72799792 None:intergenic
TTCGTTGCAACAAAACCAGC+TGG 0.501585 4_4:-72805003 None:intergenic
TCCCTAGACGAAGAAGGAAA+AGG 0.502428 4_4:-72799740 None:intergenic
GTGCATGCGTGTTCATCCTA+TGG 0.502901 4_4:+72800106 Msa0701380:CDS
TCATAGCTTCTCTTAACCAT+AGG 0.504328 4_4:-72800122 None:intergenic
ATTCGTTAGTGGGGTAGATG+TGG 0.505055 4_4:+72805882 Msa0701380:three_prime_UTR
CTGAACAACACCTGAGACAC+AGG 0.506289 4_4:-72805594 None:intergenic
CGTTGATCAATGGTGGAACA+AGG 0.508695 4_4:-72799766 None:intergenic
CTGAGCCACGTTTCACTCGA+TGG 0.510830 4_4:+72805479 Msa0701380:CDS
AGTTGCAATACTGCCCCAGC+TGG 0.517340 4_4:+72804988 Msa0701380:CDS
AACTATACAATCCCATGGAA+TGG 0.521770 4_4:-72806037 None:intergenic
AGTCTTCATTGCTAGTTCGT+TGG 0.524045 4_4:+72800073 Msa0701380:CDS
CCACGTTTCACTCGATGGAT+AGG 0.526685 4_4:+72805484 Msa0701380:CDS
TTCGTTAGTGGGGTAGATGT+GGG 0.530541 4_4:+72805883 Msa0701380:three_prime_UTR
CAGCAGGGACTCGCCTAACA+AGG 0.541105 4_4:-72805808 None:intergenic
GATAATGACGAAAAGTATCA+AGG 0.541133 4_4:-72800151 None:intergenic
GATATTTCATTGCTATGAGG+TGG 0.550588 4_4:-72805952 None:intergenic
CTAACGAATAGGGGCAGAGT+TGG 0.559027 4_4:-72805868 None:intergenic
GATTCAGGTCTCCATTCCAT+GGG 0.561253 4_4:+72806026 Msa0701380:three_prime_UTR
TATATTGGAAAACTCTAACT+AGG 0.567233 4_4:-72806133 None:intergenic
AATCTTGAGATAATTCAAGC+AGG 0.588695 4_4:-72805769 None:intergenic
CTTCAAACTATACAATCCCA+TGG 0.590626 4_4:-72806042 None:intergenic
TTAAATTGCAGTGCGTATCG+TGG 0.598999 4_4:+72805421 Msa0701380:intron
CGAGAAATTCACCTTCCTTG+AGG 0.604093 4_4:+72800214 Msa0701380:CDS
TCGTTGCAACAAAACCAGCT+GGG 0.607236 4_4:-72805002 None:intergenic
ATGGTTGCGTTGATCAATGG+TGG 0.612571 4_4:-72799773 None:intergenic
ATGAACATCTTCAGACTCGC+CGG 0.613512 4_4:+72799794 Msa0701380:CDS
ATAGAAAGGGACCTCAAGGA+AGG 0.624693 4_4:-72800225 None:intergenic
GAGGAGATGAGTCATGTCAC+CGG 0.626170 4_4:-72799813 None:intergenic
TCTACCCCACTAACGAATAG+GGG 0.642931 4_4:-72805877 None:intergenic
TCTGCCCCTATTCGTTAGTG+GGG 0.646805 4_4:+72805873 Msa0701380:three_prime_UTR
TACGCTCTTAAATTCCAGCA+GGG 0.649130 4_4:-72805823 None:intergenic
CCTATCCATCGAGTGAAACG+TGG 0.656144 4_4:-72805484 None:intergenic
CGTTGCAACAAAACCAGCTG+GGG 0.659984 4_4:-72805001 None:intergenic
GGAGGAGAACGAGAATGCTG+AGG 0.684833 4_4:-72799832 None:intergenic
AACGTGGCTCAGTCAAATAG+CGG 0.705507 4_4:-72805468 None:intergenic
GAAATGTTGATAATTTGACT+GGG 0.715465 4_4:+72805029 Msa0701380:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTGATTTTTAGAATTTTT+TGG - chr4_4:72803096-72803115 None:intergenic 10.0%
!! TAAAAATCAAATAAAACTAA+TGG + chr4_4:72803104-72803123 Msa0701380:intron 10.0%
!!! TATTTTATTTAACAAAAATC+GGG - chr4_4:72803316-72803335 None:intergenic 10.0%
!! TAGTATATATATATAAAGTA+AGG - chr4_4:72803412-72803431 None:intergenic 10.0%
!! AATAGTATATATATAAAGTA+AGG - chr4_4:72803590-72803609 None:intergenic 10.0%
!! AATAGTATATATATAAAGTA+AGG - chr4_4:72803590-72803609 None:intergenic 10.0%
!! AATAGTATATATATAAAGTA+AGG - chr4_4:72803590-72803609 None:intergenic 10.0%
!! AATAGTATATATATAAAGTA+AGG - chr4_4:72803590-72803609 None:intergenic 10.0%
!! AATAGTATATATATAAAGTA+AGG - chr4_4:72803590-72803609 None:intergenic 10.0%
!! AATAGTATATATATAAAGTA+AGG - chr4_4:72803590-72803609 None:intergenic 10.0%
!! AATAAGGCTATAAAATAAAA+AGG + chr4_4:72800864-72800883 Msa0701380:intron 15.0%
!! GATAATTATTAAAAGAAACA+TGG + chr4_4:72800953-72800972 Msa0701380:intron 15.0%
!!! TTTTTATTGCAATTTCAAAA+GGG - chr4_4:72802017-72802036 None:intergenic 15.0%
!!! TTTTTTATTGCAATTTCAAA+AGG - chr4_4:72802018-72802037 None:intergenic 15.0%
!! GAAACTAACAAAAAAAAAAA+GGG - chr4_4:72802119-72802138 None:intergenic 15.0%
!! TGAAACTAACAAAAAAAAAA+AGG - chr4_4:72802120-72802139 None:intergenic 15.0%
!!! TTTTTTTTTTGTTAGTTTCA+TGG + chr4_4:72802120-72802139 Msa0701380:intron 15.0%
!!! AGTTTTTTGTTGTTTTTAAA+AGG - chr4_4:72803026-72803045 None:intergenic 15.0%
!!! TTTTTATGATTTTATTTGAC+AGG - chr4_4:72803068-72803087 None:intergenic 15.0%
!!! AAAACTAATGGAAATTTTTT+CGG + chr4_4:72803116-72803135 Msa0701380:intron 15.0%
!!! ATATATACTATTGATTTGAA+AGG + chr4_4:72804474-72804493 Msa0701380:intron 15.0%
!!! TTGATAATTGATATATGTAA+TGG + chr4_4:72805200-72805219 Msa0701380:intron 15.0%
!!! ATTTGAAAATGTTGTTTATT+TGG + chr4_4:72805231-72805250 Msa0701380:intron 15.0%
!!! GATTTTTTTTCTTCAATTTC+AGG + chr4_4:72799948-72799967 Msa0701380:intron 20.0%
!! CTTCATAAACGTATTATAAA+CGG - chr4_4:72800051-72800070 None:intergenic 20.0%
!! ATAAGATTCATAGATAGAAA+GGG - chr4_4:72800241-72800260 None:intergenic 20.0%
!! ATTACAGTATGAGTAAAATA+AGG + chr4_4:72800848-72800867 Msa0701380:intron 20.0%
!! GCATTAAATAGTTAGAAAAA+GGG - chr4_4:72801050-72801069 None:intergenic 20.0%
!! TGCATTAAATAGTTAGAAAA+AGG - chr4_4:72801051-72801070 None:intergenic 20.0%
!! TTAAAAAAATTCAAACAGGT+CGG - chr4_4:72801261-72801280 None:intergenic 20.0%
!! TGAATAAATAAAACAGAAAC+TGG - chr4_4:72801324-72801343 None:intergenic 20.0%
!! TGAACAAATCAACTTAATTT+AGG - chr4_4:72801659-72801678 None:intergenic 20.0%
!!! TTAGTTCTATAAACCAATTT+TGG - chr4_4:72802093-72802112 None:intergenic 20.0%
!!! AGAACAAGTTTTTAATCAAA+TGG + chr4_4:72802538-72802557 Msa0701380:intron 20.0%
!! AACTTATTTAATATCTAACC+CGG - chr4_4:72802603-72802622 None:intergenic 20.0%
!!! GCATTTTTAGAAATTTTACA+GGG - chr4_4:72802881-72802900 None:intergenic 20.0%
!!! CAATTTCAGATTTTATAATC+CGG + chr4_4:72802941-72802960 Msa0701380:intron 20.0%
!! AGAAAATCAGAAAAAATTCA+AGG - chr4_4:72803254-72803273 None:intergenic 20.0%
!!! TTGAATTTTTTCTGATTTTC+TGG + chr4_4:72803253-72803272 Msa0701380:intron 20.0%
!!! TGAATTTTTTCTGATTTTCT+GGG + chr4_4:72803254-72803273 Msa0701380:intron 20.0%
!! AAAAATATTGAGAATGAATG+TGG + chr4_4:72803364-72803383 Msa0701380:intron 20.0%
!! AAAAATATTGAGAATGAATG+TGG + chr4_4:72803364-72803383 Msa0701380:intron 20.0%
!! AAATATATTGAGAATGAATG+TGG + chr4_4:72803724-72803743 Msa0701380:intron 20.0%
!! AAAAATATTGAGAATGAATG+TGG + chr4_4:72803364-72803383 Msa0701380:intron 20.0%
!! AAAAATATTGAGAATGAATG+TGG + chr4_4:72803364-72803383 Msa0701380:intron 20.0%
!! AAAAATATTGAGAATGAATG+TGG + chr4_4:72803364-72803383 Msa0701380:intron 20.0%
!! AAAAATATTGAGAATGAATG+TGG + chr4_4:72803364-72803383 Msa0701380:intron 20.0%
!! CACTGCAATTTAAAAATAAA+TGG - chr4_4:72805414-72805433 None:intergenic 20.0%
!! AGGTAAACAATATTTATTTG+TGG + chr4_4:72805656-72805675 Msa0701380:intron 20.0%
!!! ATTGTATAGTTTGAAGTTTA+TGG + chr4_4:72806049-72806068 Msa0701380:three_prime_UTR 20.0%
!!! GTTTTCCAATATATCAAAAT+CGG + chr4_4:72806143-72806162 Msa0701380:three_prime_UTR 20.0%
! TTAGTGAAAGTGATGAATTA+GGG - chr4_4:72799917-72799936 None:intergenic 25.0%
! CATAAGATTCATAGATAGAA+AGG - chr4_4:72800242-72800261 None:intergenic 25.0%
!!! GTTGTATTTGCTATGATATA+TGG + chr4_4:72800554-72800573 Msa0701380:intron 25.0%
!!! ACATTTCTAGATGATTGTTT+TGG + chr4_4:72800579-72800598 Msa0701380:intron 25.0%
!!! TGTTTTTATTGTTTGGACTT+TGG + chr4_4:72800691-72800710 Msa0701380:intron 25.0%
! TATATGATGATATGATCTCT+TGG + chr4_4:72800720-72800739 Msa0701380:intron 25.0%
! ATATGATGATATGATCTCTT+GGG + chr4_4:72800721-72800740 Msa0701380:intron 25.0%
!! TTTTACTCATACTGTAATGT+TGG - chr4_4:72800846-72800865 None:intergenic 25.0%
! TAAAAAAATTCAAACAGGTC+GGG - chr4_4:72801260-72801279 None:intergenic 25.0%
!!! GGCTTTAAAAAAATTCAAAC+AGG - chr4_4:72801265-72801284 None:intergenic 25.0%
!!! GAATTTTTTTAAAGCCTTTG+TGG + chr4_4:72801269-72801288 Msa0701380:intron 25.0%
! TAAATAACCAATAACAGCAA+CGG - chr4_4:72801630-72801649 None:intergenic 25.0%
! TTAAAGTCATAACTATAAGG+TGG - chr4_4:72801725-72801744 None:intergenic 25.0%
! GACTTAAAGTCATAACTATA+AGG - chr4_4:72801728-72801747 None:intergenic 25.0%
! TATGCATAAAAATCAACACT+CGG - chr4_4:72801805-72801824 None:intergenic 25.0%
!!! TGTGTTTTTGTTTTGAATGT+TGG + chr4_4:72802060-72802079 Msa0701380:intron 25.0%
!!! TTTTTTGTTAGTTTCATGGT+TGG + chr4_4:72802124-72802143 Msa0701380:intron 25.0%
! TATGCATTTGAAGGAATTAA+AGG - chr4_4:72802205-72802224 None:intergenic 25.0%
! TTAGATGATTATGCATTTGA+AGG - chr4_4:72802214-72802233 None:intergenic 25.0%
! ATGAAATGAAACTTATCCAT+AGG - chr4_4:72802240-72802259 None:intergenic 25.0%
! ATAAAGAAATGACTTTACAG+TGG - chr4_4:72802387-72802406 None:intergenic 25.0%
! ACTTATTTAATATCTAACCC+GGG - chr4_4:72802602-72802621 None:intergenic 25.0%
!!! TACACTTTTTATTCTTGCAT+TGG - chr4_4:72802766-72802785 None:intergenic 25.0%
! AAGTAATAGTCCATGTTTAA+AGG - chr4_4:72802833-72802852 None:intergenic 25.0%
!!! GGCATTTTTAGAAATTTTAC+AGG - chr4_4:72802882-72802901 None:intergenic 25.0%
!!! TGAATCCGAATTTTAAAATC+CGG - chr4_4:72802915-72802934 None:intergenic 25.0%
! GATTATACATAAGAATTGTC+CGG - chr4_4:72802963-72802982 None:intergenic 25.0%
!!! GAATTTTTTCTGATTTTCTG+GGG + chr4_4:72803255-72803274 Msa0701380:intron 25.0%
!! TTTAACAAAAATCGGGTTTT+CGG - chr4_4:72803309-72803328 None:intergenic 25.0%
!!! ATACTATTGATTTGAAAGGA+TGG + chr4_4:72804478-72804497 Msa0701380:intron 25.0%
! ATATCTTTGTCCAAAATGTT+TGG - chr4_4:72804527-72804546 None:intergenic 25.0%
! TTTACTAGTAATGACAAAGT+TGG + chr4_4:72804618-72804637 Msa0701380:intron 25.0%
! AAGATTTGAAAACAATTGAC+AGG - chr4_4:72804777-72804796 None:intergenic 25.0%
!!! GAAATGTTGATAATTTGACT+GGG + chr4_4:72805029-72805048 Msa0701380:CDS 25.0%
! ATAAAGCAGTCAAAACATAA+AGG - chr4_4:72805117-72805136 None:intergenic 25.0%
! AGAGAAAATACATTTCTTAG+AGG - chr4_4:72805178-72805197 None:intergenic 25.0%
! ATTATACCGATACAACAAAT+AGG + chr4_4:72805693-72805712 Msa0701380:intron 25.0%
!!! ATGTTACCTATTTGTTGTAT+CGG - chr4_4:72805702-72805721 None:intergenic 25.0%
!!! TACGTTTTATTTCTAGATTC+AGG + chr4_4:72806011-72806030 Msa0701380:three_prime_UTR 25.0%
! TATATTGGAAAACTCTAACT+AGG - chr4_4:72806136-72806155 None:intergenic 25.0%
GTTAGTGAAAGTGATGAATT+AGG - chr4_4:72799918-72799937 None:intergenic 30.0%
!! GATAATGACGAAAAGTATCA+AGG - chr4_4:72800154-72800173 None:intergenic 30.0%
TGAGACGGAAACATAAAAAT+GGG - chr4_4:72800504-72800523 None:intergenic 30.0%
ATGAGACGGAAACATAAAAA+TGG - chr4_4:72800505-72800524 None:intergenic 30.0%
!! GTCCTGATGTTTTTATTGTT+TGG + chr4_4:72800684-72800703 Msa0701380:intron 30.0%
GTCCAAACAATAAAAACATC+AGG - chr4_4:72800689-72800708 None:intergenic 30.0%
ATTGCAAACATAGAGAAGTA+GGG + chr4_4:72800782-72800801 Msa0701380:intron 30.0%
!! AAAGGATTAGCTGAAAAAAC+AGG + chr4_4:72800882-72800901 Msa0701380:intron 30.0%
GGCAAAAAGCAATAAATGTT+GGG - chr4_4:72801029-72801048 None:intergenic 30.0%
TGTTTACACAGAATCATGAT+TGG + chr4_4:72801153-72801172 Msa0701380:intron 30.0%
GTTTACACAGAATCATGATT+GGG + chr4_4:72801154-72801173 Msa0701380:intron 30.0%
!!! AGATTCAGTTTTGAGATGAA+GGG - chr4_4:72801383-72801402 None:intergenic 30.0%
!!! GGATTTTGGTTGTAAAAACA+GGG - chr4_4:72801540-72801559 None:intergenic 30.0%
!!! AGGATTTTGGTTGTAAAAAC+AGG - chr4_4:72801541-72801560 None:intergenic 30.0%
GACTTGTGAAATTGAGTTAT+TGG + chr4_4:72801680-72801699 Msa0701380:intron 30.0%
ACAATTCATGTTATGAGTTC+AGG + chr4_4:72801856-72801875 Msa0701380:intron 30.0%
! GTTTTACGATTTTACTACCT+TGG + chr4_4:72801878-72801897 Msa0701380:intron 30.0%
ATAAAACTCATGCATTACCA+AGG - chr4_4:72801898-72801917 None:intergenic 30.0%
! TTTGTTCAGCTTTCCTATTT+TGG + chr4_4:72801917-72801936 Msa0701380:intron 30.0%
! ATAGCAAAGCATTCCAAAAT+AGG - chr4_4:72801933-72801952 None:intergenic 30.0%
CATAATCATCTAAAAGCCTA+TGG + chr4_4:72802221-72802240 Msa0701380:intron 30.0%
ATGACTTTACAGTGGAAAAA+GGG - chr4_4:72802379-72802398 None:intergenic 30.0%
AATGACTTTACAGTGGAAAA+AGG - chr4_4:72802380-72802399 None:intergenic 30.0%
CAATAATGAATTAGTCCAAG+TGG + chr4_4:72802793-72802812 Msa0701380:intron 30.0%
! GATGGAATTTTGGATTTTGA+GGG + chr4_4:72803189-72803208 Msa0701380:intron 30.0%
! TTAACAAAAATCGGGTTTTC+GGG - chr4_4:72803308-72803327 None:intergenic 30.0%
! AGTGTTTAAGCCAAACATTT+TGG + chr4_4:72804514-72804533 Msa0701380:intron 30.0%
GAAATAGAAATCATATCACC+AGG - chr4_4:72804673-72804692 None:intergenic 30.0%
ATGCATAGCTAAAAAAAAGG+AGG - chr4_4:72804736-72804755 None:intergenic 30.0%
GTGATGCATAGCTAAAAAAA+AGG - chr4_4:72804739-72804758 None:intergenic 30.0%
! AACAATTGACAGGTTTTCTA+TGG - chr4_4:72804767-72804786 None:intergenic 30.0%
TATGTCAATTTCAGATCTTC+TGG + chr4_4:72804942-72804961 Msa0701380:intron 30.0%
ATGTCAATTTCAGATCTTCT+GGG + chr4_4:72804943-72804962 Msa0701380:intron 30.0%
!! GGAAATGTTGATAATTTGAC+TGG + chr4_4:72805028-72805047 Msa0701380:CDS 30.0%
GGCAATATGTATTCTTTCTT+GGG + chr4_4:72805050-72805069 Msa0701380:CDS 30.0%
! TGTTGTTTATTTGGCTGAAT+TGG + chr4_4:72805240-72805259 Msa0701380:intron 30.0%
! GTGGATTATACATTCTCAAT+TGG + chr4_4:72805440-72805459 Msa0701380:CDS 30.0%
AATCAGAATATCTCAAGAGT+AGG - chr4_4:72805556-72805575 None:intergenic 30.0%
TACTCTTGAGATATTCTGAT+TGG + chr4_4:72805555-72805574 Msa0701380:intron 30.0%
TCTTCTACTATTACTTCATC+AGG + chr4_4:72805636-72805655 Msa0701380:CDS 30.0%
TACAACAAATAGGTAACATC+AGG + chr4_4:72805703-72805722 Msa0701380:intron 30.0%
AATCTTGAGATAATTCAAGC+AGG - chr4_4:72805772-72805791 None:intergenic 30.0%
! TAGAAATTTAGCTCCTTGTT+AGG + chr4_4:72805795-72805814 Msa0701380:three_prime_UTR 30.0%
!! AAGTTTATGGTAGCTGATTT+TGG + chr4_4:72806062-72806081 Msa0701380:three_prime_UTR 30.0%
GGTTATGATTGAAATGATCA+TGG + chr4_4:72806083-72806102 Msa0701380:three_prime_UTR 30.0%
!!! CAATGCCGATTTTGATATAT+TGG - chr4_4:72806151-72806170 None:intergenic 30.0%
CAATATATCAAAATCGGCAT+TGG + chr4_4:72806149-72806168 Msa0701380:three_prime_UTR 30.0%
!!! ATTTGGTAGCGTAGATTTTG+AGG - chr4_4:72799856-72799875 None:intergenic 35.0%
ATTGTGACCTGAACATGATT+TGG - chr4_4:72799873-72799892 None:intergenic 35.0%
TAGGGATTGTGAATTGTGAA+GGG - chr4_4:72799899-72799918 None:intergenic 35.0%
TTAGGGATTGTGAATTGTGA+AGG - chr4_4:72799900-72799919 None:intergenic 35.0%
TGTGTTCTTAGCACGTTATT+TGG + chr4_4:72800004-72800023 Msa0701380:CDS 35.0%
ACGTTATTTGGATCTGTTCA+CGG + chr4_4:72800016-72800035 Msa0701380:CDS 35.0%
TCATAGCTTCTCTTAACCAT+AGG - chr4_4:72800125-72800144 None:intergenic 35.0%
!!! AAGTGTTGGTGCTACATTTT+CGG + chr4_4:72800437-72800456 Msa0701380:intron 35.0%
AAATACAACACATCCTCGAA+TGG - chr4_4:72800543-72800562 None:intergenic 35.0%
!!! TTCTAGATGATTGTTTTGGC+TGG + chr4_4:72800583-72800602 Msa0701380:intron 35.0%
CATTGCAAACATAGAGAAGT+AGG + chr4_4:72800781-72800800 Msa0701380:intron 35.0%
TTGCAAACATAGAGAAGTAG+GGG + chr4_4:72800783-72800802 Msa0701380:intron 35.0%
GGGCAAAAAGCAATAAATGT+TGG - chr4_4:72801030-72801049 None:intergenic 35.0%
TACTGAAATCGGAAAGAACA+TGG - chr4_4:72801225-72801244 None:intergenic 35.0%
TTCTTTCCGATTTCAGTAAC+TGG + chr4_4:72801227-72801246 Msa0701380:intron 35.0%
TCTTTCCGATTTCAGTAACT+GGG + chr4_4:72801228-72801247 Msa0701380:intron 35.0%
!!! AGGGAATTGGTTTTTAGCAA+GGG - chr4_4:72801364-72801383 None:intergenic 35.0%
!!! AAGGGAATTGGTTTTTAGCA+AGG - chr4_4:72801365-72801384 None:intergenic 35.0%
!!! AGTTTTGAGATGAAGGGAAT+TGG - chr4_4:72801377-72801396 None:intergenic 35.0%
!!! CAGATTCAGTTTTGAGATGA+AGG - chr4_4:72801384-72801403 None:intergenic 35.0%
CAAAAATAGAGCACAAGAGA+GGG - chr4_4:72801436-72801455 None:intergenic 35.0%
ACAAAAATAGAGCACAAGAG+AGG - chr4_4:72801437-72801456 None:intergenic 35.0%
AAAACAAGCAACAACAGAAG+AGG - chr4_4:72801561-72801580 None:intergenic 35.0%
!!! CTGTTCTTTTCTAGAGTTCT+TGG - chr4_4:72802435-72802454 None:intergenic 35.0%
! GTATAACTAGTTTAGAGACC+CGG + chr4_4:72802571-72802590 Msa0701380:intron 35.0%
! AGTCCAAGTGGTAATAGTTT+TGG + chr4_4:72802805-72802824 Msa0701380:intron 35.0%
! GTCCAAGTGGTAATAGTTTT+GGG + chr4_4:72802806-72802825 Msa0701380:intron 35.0%
!!! AGTTTTGGGTCCTTTAAACA+TGG + chr4_4:72802820-72802839 Msa0701380:intron 35.0%
! TTTAGAAATTTTACAGGGCG+CGG - chr4_4:72802876-72802895 None:intergenic 35.0%
!!! GCAGTCCGGATTTTAAAATT+CGG + chr4_4:72802907-72802926 Msa0701380:intron 35.0%
TGAAAAATGGGTCTAAACGA+TGG + chr4_4:72803171-72803190 Msa0701380:intron 35.0%
! CGATGGAATTTTGGATTTTG+AGG + chr4_4:72803188-72803207 Msa0701380:intron 35.0%
CTTAAACACTGCATGATACT+TGG - chr4_4:72804504-72804523 None:intergenic 35.0%
GTGGGATAAAATGAATTTCC+TGG + chr4_4:72804652-72804671 Msa0701380:intron 35.0%
TTCTATTTCCTTCTTCCGTA+TGG + chr4_4:72804684-72804703 Msa0701380:intron 35.0%
AATAGAATTCAGTACGGACA+GGG - chr4_4:72804821-72804840 None:intergenic 35.0%
TAATAGAATTCAGTACGGAC+AGG - chr4_4:72804822-72804841 None:intergenic 35.0%
GCACGTAATAGAATTCAGTA+CGG - chr4_4:72804827-72804846 None:intergenic 35.0%
! CTGGGCATTTTCAATATACT+TGG + chr4_4:72804961-72804980 Msa0701380:CDS 35.0%
! GGCATTTTCAATATACTTGG+AGG + chr4_4:72804964-72804983 Msa0701380:CDS 35.0%
GGGCAATATGTATTCTTTCT+TGG + chr4_4:72805049-72805068 Msa0701380:CDS 35.0%
AAGCAGTCAAAACATAAAGG+TGG - chr4_4:72805114-72805133 None:intergenic 35.0%
ACATTTCTTAGAGGACAATC+AGG - chr4_4:72805169-72805188 None:intergenic 35.0%
!!! CAGGAATTTTGTTTTGCAGT+TGG + chr4_4:72805722-72805741 Msa0701380:intron 35.0%
! TTTTCTAGGTAAGGGGTAAA+TGG + chr4_4:72805906-72805925 Msa0701380:three_prime_UTR 35.0%
TTTCTAGGTAAGGGGTAAAT+GGG + chr4_4:72805907-72805926 Msa0701380:three_prime_UTR 35.0%
GATATTTCATTGCTATGAGG+TGG - chr4_4:72805955-72805974 None:intergenic 35.0%
CCTGATATTTCATTGCTATG+AGG - chr4_4:72805958-72805977 None:intergenic 35.0%
CCTCATAGCAATGAAATATC+AGG + chr4_4:72805955-72805974 Msa0701380:three_prime_UTR 35.0%
AACTATACAATCCCATGGAA+TGG - chr4_4:72806040-72806059 None:intergenic 35.0%
CTTCAAACTATACAATCCCA+TGG - chr4_4:72806045-72806064 None:intergenic 35.0%
CATTGTCACTCAGAACTAAT+AGG + chr4_4:72806174-72806193 Msa0701380:three_prime_UTR 35.0%
! TTCCTTTTCCTTCTTCGTCT+AGG + chr4_4:72799738-72799757 Msa0701380:five_prime_UTR 40.0%
! TCCTTTTCCTTCTTCGTCTA+GGG + chr4_4:72799739-72799758 Msa0701380:five_prime_UTR 40.0%
! TTCATGGTTGCGTTGATCAA+TGG - chr4_4:72799779-72799798 None:intergenic 40.0%
TACGCTACCAAATCATGTTC+AGG + chr4_4:72799863-72799882 Msa0701380:CDS 40.0%
AGGGATTGTGAATTGTGAAG+GGG - chr4_4:72799898-72799917 None:intergenic 40.0%
AGTCTTCATTGCTAGTTCGT+TGG + chr4_4:72800073-72800092 Msa0701380:CDS 40.0%
! CTAGTTCGTTGGCTATTGTT+TGG + chr4_4:72800084-72800103 Msa0701380:CDS 40.0%
ATAGATAGAAAGGGACCTCA+AGG - chr4_4:72800232-72800251 None:intergenic 40.0%
!!! AGTGTTGGTGCTACATTTTC+GGG + chr4_4:72800438-72800457 Msa0701380:intron 40.0%
TTTCGCAGATGCAAATGAGA+CGG - chr4_4:72800519-72800538 None:intergenic 40.0%
ATTTGAGTGACGCTTAACCT+AGG + chr4_4:72800640-72800659 Msa0701380:intron 40.0%
TTTGAGTGACGCTTAACCTA+GGG + chr4_4:72800641-72800660 Msa0701380:intron 40.0%
!! TCTTGGGCATTTTGTTTCGA+GGG + chr4_4:72800737-72800756 Msa0701380:intron 40.0%
CTTCTCTATGTTTGCAATGC+AGG - chr4_4:72800780-72800799 None:intergenic 40.0%
TCGTACAAGTCTACGATTTC+TGG + chr4_4:72801113-72801132 Msa0701380:intron 40.0%
TCTGTCCCAGTTACTGAAAT+CGG - chr4_4:72801236-72801255 None:intergenic 40.0%
GTAAAAACAGGGTACAAGAG+AGG - chr4_4:72801529-72801548 None:intergenic 40.0%
! GCAACAACAGAAGAGGATTT+TGG - chr4_4:72801554-72801573 None:intergenic 40.0%
! TCTAACTCCGTTGCTGTTAT+TGG + chr4_4:72801620-72801639 Msa0701380:intron 40.0%
! TGTTGGAGCATCTCCAAAAT+TGG + chr4_4:72802077-72802096 Msa0701380:intron 40.0%
! TGTTAGTTTCATGGTTGGAG+AGG + chr4_4:72802129-72802148 Msa0701380:intron 40.0%
TTTCATGGTTGGAGAGGAAT+GGG + chr4_4:72802135-72802154 Msa0701380:intron 40.0%
GACCCAAAACTATTACCACT+TGG - chr4_4:72802811-72802830 None:intergenic 40.0%
! TTAGAAATTTTACAGGGCGC+GGG - chr4_4:72802875-72802894 None:intergenic 40.0%
TTAAAATCCGGACTGCACAA+GGG - chr4_4:72802903-72802922 None:intergenic 40.0%
! TTTAAAATCCGGACTGCACA+AGG - chr4_4:72802904-72802923 None:intergenic 40.0%
TGAAATGTGAGAGAGTCTGA+TGG - chr4_4:72802988-72803007 None:intergenic 40.0%
! GGGTCTAAACGATGGAATTT+TGG + chr4_4:72803179-72803198 Msa0701380:intron 40.0%
!! GGAATTTTGGATTTTGAGGG+CGG + chr4_4:72803192-72803211 Msa0701380:intron 40.0%
!! CTGATTTTCTGGGGATGTTT+CGG + chr4_4:72803264-72803283 Msa0701380:intron 40.0%
ATGAATGTGGAAGTGACATG+TGG + chr4_4:72803377-72803396 Msa0701380:intron 40.0%
ATGAATGTGGAAGTGACATG+TGG + chr4_4:72803377-72803396 Msa0701380:intron 40.0%
ATGAATGTGGAAGTGACATG+TGG + chr4_4:72803377-72803396 Msa0701380:intron 40.0%
ATGAATGTGGAAGTGACATG+TGG + chr4_4:72803377-72803396 Msa0701380:intron 40.0%
ATGAATGTGGAAGTGACATG+TGG + chr4_4:72803377-72803396 Msa0701380:intron 40.0%
ATGAATGTGGAAGTGACATG+TGG + chr4_4:72803377-72803396 Msa0701380:intron 40.0%
AAATGCATGCCATCTTCTTC+TGG + chr4_4:72804582-72804601 Msa0701380:intron 40.0%
! ATTTTATCCCACACTGTGAG+CGG - chr4_4:72804644-72804663 None:intergenic 40.0%
CAGGGAATATATTCTTGGAC+AGG - chr4_4:72804803-72804822 None:intergenic 40.0%
ACGGACAGGGAATATATTCT+TGG - chr4_4:72804808-72804827 None:intergenic 40.0%
TTAAATTGCAGTGCGTATCG+TGG + chr4_4:72805421-72805440 Msa0701380:intron 40.0%
TACGCTCTTAAATTCCAGCA+GGG - chr4_4:72805826-72805845 None:intergenic 40.0%
TTACGCTCTTAAATTCCAGC+AGG - chr4_4:72805827-72805846 None:intergenic 40.0%
ATCTACCCCACTAACGAATA+GGG - chr4_4:72805881-72805900 None:intergenic 40.0%
! AGATGTGGGTTTTCTAGGTA+AGG + chr4_4:72805897-72805916 Msa0701380:three_prime_UTR 40.0%
! GATGTGGGTTTTCTAGGTAA+GGG + chr4_4:72805898-72805917 Msa0701380:three_prime_UTR 40.0%
! ATGTGGGTTTTCTAGGTAAG+GGG + chr4_4:72805899-72805918 Msa0701380:three_prime_UTR 40.0%
ACGCACGAAACGCTAATTAC+AGG - chr4_4:72799711-72799730 None:intergenic 45.0%
TCCCTAGACGAAGAAGGAAA+AGG - chr4_4:72799743-72799762 None:intergenic 45.0%
! AGGTTTTCCCTAGACGAAGA+AGG - chr4_4:72799749-72799768 None:intergenic 45.0%
! CGTTGATCAATGGTGGAACA+AGG - chr4_4:72799769-72799788 None:intergenic 45.0%
! ATGGTTGCGTTGATCAATGG+TGG - chr4_4:72799776-72799795 None:intergenic 45.0%
ATGAACATCTTCAGACTCGC+CGG + chr4_4:72799794-72799813 Msa0701380:CDS 45.0%
!! TGGTAGCGTAGATTTTGAGG+AGG - chr4_4:72799853-72799872 None:intergenic 45.0%
!! TGTTGCTGCTAGCTTTCTTC+TGG + chr4_4:72800178-72800197 Msa0701380:CDS 45.0%
CGAGAAATTCACCTTCCTTG+AGG + chr4_4:72800214-72800233 Msa0701380:CDS 45.0%
ATAGAAAGGGACCTCAAGGA+AGG - chr4_4:72800228-72800247 None:intergenic 45.0%
TGACACTGACAGTTTGACAC+TGG + chr4_4:72800340-72800359 Msa0701380:intron 45.0%
TGTAGCACCAACACTTCTGA+TGG - chr4_4:72800433-72800452 None:intergenic 45.0%
TAACCTAGGGAACAGGGTTA+TGG + chr4_4:72800654-72800673 Msa0701380:intron 45.0%
AACCTAGGGAACAGGGTTAT+GGG + chr4_4:72800655-72800674 Msa0701380:intron 45.0%
!! CTCTTGGGCATTTTGTTTCG+AGG + chr4_4:72800736-72800755 Msa0701380:intron 45.0%
GAAGTAGGGGTAACCAACAA+TGG + chr4_4:72800796-72800815 Msa0701380:intron 45.0%
GTAACCAACAATGGTGGCTA+GGG + chr4_4:72800805-72800824 Msa0701380:intron 45.0%
ATAACCCTAGCCACCATTGT+TGG - chr4_4:72800812-72800831 None:intergenic 45.0%
!! TCTACGATTTCTGGAGTGCT+TGG + chr4_4:72801122-72801141 Msa0701380:intron 45.0%
!! ACTGGTCTTATTGCCAAACC+AGG - chr4_4:72801306-72801325 None:intergenic 45.0%
GTACAAGAGAGGATGTGTTC+TGG - chr4_4:72801518-72801537 None:intergenic 45.0%
GTTTCATGGTTGGAGAGGAA+TGG + chr4_4:72802134-72802153 Msa0701380:intron 45.0%
GGAGACTGAACACTGTGATT+CGG + chr4_4:72802160-72802179 Msa0701380:intron 45.0%
AAAAATGCCCTTGTGCAGTC+CGG + chr4_4:72802893-72802912 Msa0701380:intron 45.0%
CCTTAGAAGGGACTTCTTAC+GGG - chr4_4:72803221-72803240 None:intergenic 45.0%
CCCTTAGAAGGGACTTCTTA+CGG - chr4_4:72803222-72803241 None:intergenic 45.0%
CCGTAAGAAGTCCCTTCTAA+GGG + chr4_4:72803219-72803238 Msa0701380:intron 45.0%
AGCAGATTCCATACGGAAGA+AGG - chr4_4:72804695-72804714 None:intergenic 45.0%
TAACGAATGCTGCGTTGAAG+TGG + chr4_4:72804893-72804912 Msa0701380:intron 45.0%
TCGTTGCAACAAAACCAGCT+GGG - chr4_4:72805005-72805024 None:intergenic 45.0%
TTCGTTGCAACAAAACCAGC+TGG - chr4_4:72805006-72805025 None:intergenic 45.0%
!!! CTGGTTTTGTTGCAACGAAG+TGG + chr4_4:72805007-72805026 Msa0701380:CDS 45.0%
AACGTGGCTCAGTCAAATAG+CGG - chr4_4:72805471-72805490 None:intergenic 45.0%
TCTACCCCACTAACGAATAG+GGG - chr4_4:72805880-72805899 None:intergenic 45.0%
CATCTACCCCACTAACGAAT+AGG - chr4_4:72805882-72805901 None:intergenic 45.0%
ATTCGTTAGTGGGGTAGATG+TGG + chr4_4:72805882-72805901 Msa0701380:three_prime_UTR 45.0%
TTCGTTAGTGGGGTAGATGT+GGG + chr4_4:72805883-72805902 Msa0701380:three_prime_UTR 45.0%
AGATTCAGGTCTCCATTCCA+TGG + chr4_4:72806025-72806044 Msa0701380:three_prime_UTR 45.0%
GATTCAGGTCTCCATTCCAT+GGG + chr4_4:72806026-72806045 Msa0701380:three_prime_UTR 45.0%
!! AAATTAATAAAAATGAAAAA+TGG + chr4_4:72803158-72803177 Msa0701380:intron 5.0%
!! AATTAATAAAAATGAAAAAT+GGG + chr4_4:72803159-72803178 Msa0701380:intron 5.0%
!!! ATATTTTATTTAACAAAAAT+CGG - chr4_4:72803317-72803336 None:intergenic 5.0%
!!! ATTTTTGTTAAATAAAATAT+TGG + chr4_4:72803317-72803336 Msa0701380:intron 5.0%
GGCGAGTCTGAAGATGTTCA+TGG - chr4_4:72799795-72799814 None:intergenic 50.0%
GAGGAGATGAGTCATGTCAC+CGG - chr4_4:72799816-72799835 None:intergenic 50.0%
GTGCATGCGTGTTCATCCTA+TGG + chr4_4:72800106-72800125 Msa0701380:CDS 50.0%
! CACTTCTGATGGATGCGTGT+TGG - chr4_4:72800422-72800441 None:intergenic 50.0%
! CACGCATCCATCAGAAGTGT+TGG + chr4_4:72800423-72800442 Msa0701380:intron 50.0%
TGACGCTTAACCTAGGGAAC+AGG + chr4_4:72800647-72800666 Msa0701380:intron 50.0%
GACGCTTAACCTAGGGAACA+GGG + chr4_4:72800648-72800667 Msa0701380:intron 50.0%
AACCCATAACCCTGTTCCCT+AGG - chr4_4:72800660-72800679 None:intergenic 50.0%
GTAGGGGTAACCAACAATGG+TGG + chr4_4:72800799-72800818 Msa0701380:intron 50.0%
GGTAACCAACAATGGTGGCT+AGG + chr4_4:72800804-72800823 Msa0701380:intron 50.0%
AAGATCGCGTGAAATCGCTG+TGG + chr4_4:72801178-72801197 Msa0701380:intron 50.0%
AGGTCAGAGTTCAGCCACAA+AGG - chr4_4:72801286-72801305 None:intergenic 50.0%
TTTGTGGCTGAACTCTGACC+TGG + chr4_4:72801285-72801304 Msa0701380:intron 50.0%
TAGCAAGGGAAACGACGCAA+CGG - chr4_4:72801350-72801369 None:intergenic 50.0%
CGCGTAGAAGCAGAAGATGT+TGG - chr4_4:72801483-72801502 None:intergenic 50.0%
ATGGTTGGAGAGGAATGGGT+TGG + chr4_4:72802139-72802158 Msa0701380:intron 50.0%
CCCGTAAGAAGTCCCTTCTA+AGG + chr4_4:72803218-72803237 Msa0701380:intron 50.0%
! AGTCCCTTCTAAGGGAGTCA+TGG + chr4_4:72803227-72803246 Msa0701380:intron 50.0%
GGACCATGACTCCCTTAGAA+GGG - chr4_4:72803233-72803252 None:intergenic 50.0%
AGGACCATGACTCCCTTAGA+AGG - chr4_4:72803234-72803253 None:intergenic 50.0%
!! GGGTTTTCGGGCTACTTGAT+CGG - chr4_4:72803296-72803315 None:intergenic 50.0%
GCATTGCAGCCAGAAGAAGA+TGG - chr4_4:72804594-72804613 None:intergenic 50.0%
! CTTCTTCTGGCTGCAATGCA+TGG + chr4_4:72804595-72804614 Msa0701380:intron 50.0%
CAGCTGCAGCAGATTCCATA+CGG - chr4_4:72804702-72804721 None:intergenic 50.0%
CGTTGCAACAAAACCAGCTG+GGG - chr4_4:72805004-72805023 None:intergenic 50.0%
CCTATCCATCGAGTGAAACG+TGG - chr4_4:72805487-72805506 None:intergenic 50.0%
CCACGTTTCACTCGATGGAT+AGG + chr4_4:72805484-72805503 Msa0701380:CDS 50.0%
! GTTTTTGCAGCCTGTGTCTC+AGG + chr4_4:72805584-72805603 Msa0701380:intron 50.0%
CTGAACAACACCTGAGACAC+AGG - chr4_4:72805597-72805616 None:intergenic 50.0%
CTAACGAATAGGGGCAGAGT+TGG - chr4_4:72805871-72805890 None:intergenic 50.0%
ACTCTGCCCCTATTCGTTAG+TGG + chr4_4:72805871-72805890 Msa0701380:three_prime_UTR 50.0%
CTCTGCCCCTATTCGTTAGT+GGG + chr4_4:72805872-72805891 Msa0701380:three_prime_UTR 50.0%
TCTGCCCCTATTCGTTAGTG+GGG + chr4_4:72805873-72805892 Msa0701380:three_prime_UTR 50.0%
! GGGGTAGATGTGGGTTTTCT+AGG + chr4_4:72805892-72805911 Msa0701380:three_prime_UTR 50.0%
GGAGGAGAACGAGAATGCTG+AGG - chr4_4:72799835-72799854 None:intergenic 55.0%
GCATCTGCGAAAGCCATTCG+AGG + chr4_4:72800527-72800546 Msa0701380:intron 55.0%
GGCTGAACTCTGACCTGGTT+TGG + chr4_4:72801290-72801309 Msa0701380:intron 55.0%
AGCAAGGGAAACGACGCAAC+GGG - chr4_4:72801349-72801368 None:intergenic 55.0%
ATATCTAACCCGGGCAACGC+CGG - chr4_4:72802593-72802612 None:intergenic 55.0%
GCGGGAGAAGGCAATAAGGT+GGG - chr4_4:72802857-72802876 None:intergenic 55.0%
! ATTTTACAGGGCGCGGGAGA+AGG - chr4_4:72802869-72802888 None:intergenic 55.0%
AAAGTTGGCCGCTCACAGTG+TGG + chr4_4:72804633-72804652 Msa0701380:intron 55.0%
AAGTTGGCCGCTCACAGTGT+GGG + chr4_4:72804634-72804653 Msa0701380:intron 55.0%
AGTTGCAATACTGCCCCAGC+TGG + chr4_4:72804988-72805007 Msa0701380:CDS 55.0%
CTGAGCCACGTTTCACTCGA+TGG + chr4_4:72805479-72805498 Msa0701380:CDS 55.0%
TTTAGAGACCCGGCGTTGCC+CGG + chr4_4:72802581-72802600 Msa0701380:intron 60.0%
TATCTAACCCGGGCAACGCC+GGG - chr4_4:72802592-72802611 None:intergenic 60.0%
CGCGGGAGAAGGCAATAAGG+TGG - chr4_4:72802858-72802877 None:intergenic 60.0%
CAGCAGGGACTCGCCTAACA+AGG - chr4_4:72805811-72805830 None:intergenic 60.0%
CTTGTTAGGCGAGTCCCTGC+TGG + chr4_4:72805809-72805828 Msa0701380:three_prime_UTR 60.0%
TTAGAGACCCGGCGTTGCCC+GGG + chr4_4:72802582-72802601 Msa0701380:intron 65.0%
GGGCGCGGGAGAAGGCAATA+AGG - chr4_4:72802861-72802880 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 72799664 72806229 72799664 ID=Msa0701380;Name=Msa0701380
chr4_4 mRNA 72799664 72806229 72799664 ID=Msa0701380-mRNA-1;Parent=Msa0701380;Name=Msa0701380-mRNA-1;_AED=0.03;_eAED=0.03;_QI=130|1|1|1|1|1|6|452|215
chr4_4 exon 72799664 72799884 72799664 ID=Msa0701380-mRNA-1:exon:22257;Parent=Msa0701380-mRNA-1
chr4_4 exon 72799970 72800235 72799970 ID=Msa0701380-mRNA-1:exon:22258;Parent=Msa0701380-mRNA-1
chr4_4 exon 72804956 72805071 72804956 ID=Msa0701380-mRNA-1:exon:22259;Parent=Msa0701380-mRNA-1
chr4_4 exon 72805432 72805505 72805432 ID=Msa0701380-mRNA-1:exon:22260;Parent=Msa0701380-mRNA-1
chr4_4 exon 72805594 72805657 72805594 ID=Msa0701380-mRNA-1:exon:22261;Parent=Msa0701380-mRNA-1
chr4_4 exon 72805741 72806229 72805741 ID=Msa0701380-mRNA-1:exon:22262;Parent=Msa0701380-mRNA-1
chr4_4 five_prime_UTR 72799664 72799793 72799664 ID=Msa0701380-mRNA-1:five_prime_utr;Parent=Msa0701380-mRNA-1
chr4_4 CDS 72799794 72799884 72799794 ID=Msa0701380-mRNA-1:cds;Parent=Msa0701380-mRNA-1
chr4_4 CDS 72799970 72800235 72799970 ID=Msa0701380-mRNA-1:cds;Parent=Msa0701380-mRNA-1
chr4_4 CDS 72804956 72805071 72804956 ID=Msa0701380-mRNA-1:cds;Parent=Msa0701380-mRNA-1
chr4_4 CDS 72805432 72805505 72805432 ID=Msa0701380-mRNA-1:cds;Parent=Msa0701380-mRNA-1
chr4_4 CDS 72805594 72805657 72805594 ID=Msa0701380-mRNA-1:cds;Parent=Msa0701380-mRNA-1
chr4_4 CDS 72805741 72805777 72805741 ID=Msa0701380-mRNA-1:cds;Parent=Msa0701380-mRNA-1
chr4_4 three_prime_UTR 72805778 72806229 72805778 ID=Msa0701380-mRNA-1:three_prime_utr;Parent=Msa0701380-mRNA-1
Gene Sequence

>Msa0701380

ATGAACATCTTCAGACTCGCCGGTGACATGACTCATCTCCTCAGCATTCTCGTTCTCCTCCTCAAAATCTACGCTACCAAATCATGTTCAGGTGTTTCTCGTAAGACTCAAGAACTATACGCGATTGTGTTCTTAGCACGTTATTTGGATCTGTTCACGGATTTCATTTCCGTTTATAATACGTTTATGAAGATAGTCTTCATTGCTAGTTCGTTGGCTATTGTTTGGTGCATGCGTGTTCATCCTATGGTTAAGAGAAGCTATGATAAAGACCTTGATACTTTTCGTCATTATCTTCTTGTTGCTGCTAGCTTTCTTCTGGCACTCGTCTTGCACGAGAAATTCACCTTCCTTGAGATCTTCTGGGCATTTTCAATATACTTGGAGGCAGTTGCAATACTGCCCCAGCTGGTTTTGTTGCAACGAAGTGGAAATGTTGATAATTTGACTGGGCAATATGTATTCTTTCTTGGTGCGTATCGTGGATTATACATTCTCAATTGGATATACCGCTATTTGACTGAGCCACGTTTCACTCGATGGATAGCCTGTGTCTCAGGTGTTGTTCAGACAGCTCTGTATGCTGATTTCTTCTACTATTACTTCATCAGTTGGAAGAACAATTCAAAACTGAAGCTGCCTGCTTGA
Protein sequence

>Msa0701380

MNIFRLAGDMTHLLSILVLLLKIYATKSCSGVSRKTQELYAIVFLARYLDLFTDFISVYNTFMKIVFIASSLAIVWCMRVHPMVKRSYDKDLDTFRHYLLVAASFLLALVLHEKFTFLEIFWAFSIYLEAVAILPQLVLLQRSGNVDNLTGQYVFFLGAYRGLYILNWIYRYLTEPRFTRWIACVSGVVQTALYADFFYYYFISWKNNSKLKLPA*