Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0618580 | XP_003629837.1 | 99.070 | 215 | 2 | 0 | 1 | 215 | 1 | 215 | 2.84e-153 | 434 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0618580 | sp|P35402|ERD2A_ARATH | 81.860 | 215 | 39 | 0 | 1 | 215 | 1 | 215 | 9.52e-133 | 374 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0618580 | G7L790 | 99.070 | 215 | 2 | 0 | 1 | 215 | 1 | 215 | 1.36e-153 | 434 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0035120 | Msa0618580 | 0.803276 | 3.765609e-49 | -8.615850e-47 |
| Msa0093850 | Msa0618580 | 0.804707 | 1.898018e-49 | -8.615850e-47 |
| Msa0618580 | Msa0657360 | 0.924382 | 7.589699e-90 | -8.615850e-47 |
| Msa0618580 | Msa0686560 | 0.804372 | 2.229317e-49 | -8.615850e-47 |
| Msa0618580 | Msa0693330 | 0.805376 | 1.375549e-49 | -8.615850e-47 |
| Msa0618580 | Msa0701380 | 0.849885 | 2.425516e-60 | -8.615850e-47 |
| Msa0618580 | Msa0702720 | 0.809050 | 2.291648e-50 | -8.615850e-47 |
| Msa0618580 | Msa0707250 | 0.806500 | 7.982588e-50 | -8.615850e-47 |
| Msa0618580 | Msa0725050 | 0.805374 | 1.377023e-49 | -8.615850e-47 |
| Msa0618580 | Msa0833530 | 0.811044 | 8.525062e-51 | -8.615850e-47 |
| Msa0618580 | Msa0967870 | 0.809460 | 1.871513e-50 | -8.615850e-47 |
| Msa0618580 | Msa1029070 | 0.819336 | 1.225305e-52 | -8.615850e-47 |
| Msa0618580 | Msa1089450 | 0.851722 | 7.376764e-61 | -8.615850e-47 |
| Msa0618580 | Msa1128600 | 0.804867 | 1.757489e-49 | -8.615850e-47 |
| Msa0618580 | Msa1155170 | -0.821838 | 3.262458e-53 | -8.615850e-47 |
| Msa0618580 | Msa1156160 | 0.816520 | 5.301647e-52 | -8.615850e-47 |
| Msa0618580 | Msa1211230 | -0.813762 | 2.172561e-51 | -8.615850e-47 |
| Msa0618580 | Msa1211420 | -0.806489 | 8.022740e-50 | -8.615850e-47 |
| Msa0618580 | Msa1225860 | -0.828181 | 1.036858e-54 | -8.615850e-47 |
| Msa0618580 | Msa1331050 | -0.807574 | 4.729941e-50 | -8.615850e-47 |
| Msa0618580 | Msa1341840 | 0.809269 | 2.056796e-50 | -8.615850e-47 |
| Msa0618580 | Msa1418240 | 0.829453 | 5.104113e-55 | -8.615850e-47 |
| Msa0618580 | Msa1425880 | 0.802735 | 4.872060e-49 | -8.615850e-47 |
| Msa0618580 | Msa1440310 | 0.816525 | 5.287892e-52 | -8.615850e-47 |
| Msa0618580 | Msa1461540 | 0.802512 | 5.415561e-49 | -8.615850e-47 |
| Msa0188350 | Msa0618580 | 0.801743 | 7.794630e-49 | -8.615850e-47 |
| Msa0204960 | Msa0618580 | 0.802432 | 5.627398e-49 | -8.615850e-47 |
| Msa0214550 | Msa0618580 | 0.803532 | 3.333194e-49 | -8.615850e-47 |
| Msa0225100 | Msa0618580 | 0.800429 | 1.447147e-48 | -8.615850e-47 |
| Msa0367870 | Msa0618580 | 0.821097 | 4.839084e-53 | -8.615850e-47 |
| Msa0450400 | Msa0618580 | -0.832891 | 7.295211e-56 | -8.615850e-47 |
| Msa0240900 | Msa0618580 | 0.843602 | 1.266794e-58 | -8.615850e-47 |
| Msa0266180 | Msa0618580 | 0.808172 | 3.529299e-50 | -8.615850e-47 |
| Msa0279850 | Msa0618580 | 0.815581 | 8.589066e-52 | -8.615850e-47 |
| Msa0281530 | Msa0618580 | 0.818872 | 1.562082e-52 | -8.615850e-47 |
| Msa0287740 | Msa0618580 | 0.802408 | 5.691190e-49 | -8.615850e-47 |
| Msa0290720 | Msa0618580 | 0.810132 | 1.341964e-50 | -8.615850e-47 |
| Msa0296820 | Msa0618580 | 0.812486 | 4.138861e-51 | -8.615850e-47 |
| Msa0317970 | Msa0618580 | 0.848291 | 6.731195e-60 | -8.615850e-47 |
| Msa0322900 | Msa0618580 | 0.801020 | 1.096578e-48 | -8.615850e-47 |
| Msa0341690 | Msa0618580 | 0.802680 | 5.002060e-49 | -8.615850e-47 |
| Msa0485240 | Msa0618580 | 0.829849 | 4.089863e-55 | -8.615850e-47 |
| Msa0518030 | Msa0618580 | 0.800962 | 1.126883e-48 | -8.615850e-47 |
| Msa0583360 | Msa0618580 | -0.828344 | 9.474310e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0618580 | MtrunA17_Chr8g0379591 | 99.070 | 215 | 2 | 0 | 1 | 215 | 1 | 215 | 2.61e-157 | 434 |
| Msa0618580 | MtrunA17_Chr7g0235941 | 73.023 | 215 | 58 | 0 | 1 | 215 | 1 | 215 | 4.36e-113 | 322 |
| Msa0618580 | MtrunA17_Chr4g0038571 | 35.526 | 228 | 128 | 9 | 2 | 215 | 47 | 269 | 1.45e-27 | 105 |
| Msa0618580 | MtrunA17_Chr8g0339351 | 35.088 | 228 | 130 | 7 | 2 | 214 | 47 | 271 | 2.01e-27 | 105 |
| Msa0618580 | MtrunA17_Chr3g0142691 | 33.188 | 229 | 132 | 8 | 2 | 215 | 47 | 269 | 1.71e-26 | 102 |
| Msa0618580 | MtrunA17_Chr8g0339401 | 33.974 | 156 | 86 | 6 | 60 | 201 | 6 | 158 | 9.65e-18 | 77.0 |
| Msa0618580 | MtrunA17_Chr8g0339421 | 33.668 | 199 | 115 | 7 | 30 | 214 | 65 | 260 | 6.61e-17 | 77.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0618580 | AT1G29330.1 | 81.860 | 215 | 39 | 0 | 1 | 215 | 1 | 215 | 9.67e-134 | 374 |
| Msa0618580 | AT3G25040.1 | 72.093 | 215 | 60 | 0 | 1 | 215 | 1 | 215 | 3.57e-116 | 330 |
| Msa0618580 | AT1G29330.2 | 84.314 | 153 | 24 | 0 | 63 | 215 | 1 | 153 | 2.39e-94 | 272 |
| Msa0618580 | AT3G25160.1 | 33.921 | 227 | 133 | 5 | 2 | 214 | 48 | 271 | 1.42e-28 | 108 |
| Msa0618580 | AT1G19970.1 | 34.498 | 229 | 129 | 9 | 2 | 215 | 47 | 269 | 2.65e-26 | 102 |
| Msa0618580 | AT4G38790.1 | 33.624 | 229 | 131 | 9 | 2 | 215 | 48 | 270 | 1.52e-25 | 100 |
| Msa0618580 | AT2G21190.1 | 31.878 | 229 | 135 | 9 | 2 | 215 | 44 | 266 | 1.65e-25 | 100 |
| Msa0618580 | AT1G75760.1 | 32.751 | 229 | 133 | 8 | 2 | 215 | 47 | 269 | 1.98e-25 | 100 |
| Msa0618580 | AT1G75760.2 | 34.112 | 214 | 121 | 8 | 2 | 201 | 47 | 254 | 6.94e-25 | 98.6 |
| Msa0618580 | AT1G19970.2 | 35.028 | 177 | 104 | 6 | 2 | 173 | 47 | 217 | 2.98e-22 | 91.3 |
| Msa0618580 | AT1G75760.3 | 33.714 | 175 | 105 | 6 | 2 | 171 | 47 | 215 | 6.81e-21 | 87.4 |
Find 68 sgRNAs with CRISPR-Local
Find 249 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGTCAATTTCAGATCTTC+TGG | 0.214649 | 4_2:-69522140 | Msa0618580:intron |
| GGGCAATATGTATTCTTTCT+TGG | 0.265304 | 4_2:-69522033 | Msa0618580:CDS |
| TGTGTTCTTAGCACGTTATT+TGG | 0.272313 | 4_2:-69525167 | Msa0618580:CDS |
| AAGTTTATGGTAGCTGATTT+TGG | 0.275925 | 4_2:-69521020 | Msa0618580:three_prime_UTR |
| TGTTGCTGCTAGCTTTCTTC+TGG | 0.281140 | 4_2:-69524993 | Msa0618580:CDS |
| ATTGTATAGTTTGAAGTTTA+TGG | 0.301044 | 4_2:-69521033 | Msa0618580:three_prime_UTR |
| GGCAATATGTATTCTTTCTT+GGG | 0.306579 | 4_2:-69522032 | Msa0618580:intron |
| TAGAAATTTAGCTCCTTGTT+AGG | 0.325336 | 4_2:-69521287 | Msa0618580:three_prime_UTR |
| TTTCTAGGTAAGGGGTAAAT+GGG | 0.357165 | 4_2:-69521175 | Msa0618580:three_prime_UTR |
| TCTTCTACTATTACTTCATC+AGG | 0.375089 | 4_2:-69521446 | Msa0618580:intron |
| CATTGTCACTCAGAACTAAT+AGG | 0.387006 | 4_2:-69520908 | Msa0618580:three_prime_UTR |
| CCTCATAGCAATGAAATATC+AGG | 0.395146 | 4_2:-69521127 | Msa0618580:three_prime_UTR |
| GTGGATTATACATTCTCAAT+TGG | 0.399809 | 4_2:-69521642 | Msa0618580:CDS |
| TACGCTACCAAATCATGTTC+AGG | 0.407698 | 4_2:-69525309 | Msa0618580:intron |
| CTTGTTAGGCGAGTCCCTGC+TGG | 0.423244 | 4_2:-69521273 | Msa0618580:three_prime_UTR |
| ATTGTGACCTGAACATGATT+TGG | 0.429861 | 4_2:+69525302 | None:intergenic |
| TTATAAGTAAGAATTAATTT+CGG | 0.433199 | 4_2:-69520875 | Msa0618580:three_prime_UTR |
| CTTCATAAACGTATTATAAA+CGG | 0.434373 | 4_2:+69525123 | None:intergenic |
| CTCTGCCTCTATTCGTTAGT+GGG | 0.444690 | 4_2:-69521210 | Msa0618580:three_prime_UTR |
| CCTGATATTTCATTGCTATG+AGG | 0.447961 | 4_2:+69521127 | None:intergenic |
| CAATATATCAAAATCGGCAT+TGG | 0.451283 | 4_2:-69520933 | Msa0618580:three_prime_UTR |
| GGTTATGATTGATATGATCA+TGG | 0.458793 | 4_2:-69520999 | Msa0618580:three_prime_UTR |
| ACTCTGCCTCTATTCGTTAG+TGG | 0.463064 | 4_2:-69521211 | Msa0618580:three_prime_UTR |
| CTAGTTCGTTGGCTATTGTT+TGG | 0.468529 | 4_2:-69525087 | Msa0618580:CDS |
| ACGCACGAAACGCTAATTAC+AGG | 0.471025 | 4_2:+69525464 | None:intergenic |
| ACGTTATTTGGATCTGTTCA+CGG | 0.477076 | 4_2:-69525155 | Msa0618580:CDS |
| AGATTCAGGTCTCCATTCCA+TGG | 0.477613 | 4_2:-69521057 | Msa0618580:three_prime_UTR |
| ATGTCAATTTCAGATCTTCT+GGG | 0.481234 | 4_2:-69522139 | Msa0618580:intron |
| GGAAATGTTGATAATTTGAC+TGG | 0.481668 | 4_2:-69522054 | Msa0618580:CDS |
| TTCATGGTTGCGTTGATCAA+TGG | 0.492548 | 4_2:+69525396 | None:intergenic |
| ATTCGTTAGTGGGGTAGATG+TGG | 0.497935 | 4_2:-69521200 | Msa0618580:three_prime_UTR |
| TTACGCTCTTAAATTCCAGC+AGG | 0.498501 | 4_2:+69521258 | None:intergenic |
| GGCGAGTCTGAAGATGTTCA+TGG | 0.501045 | 4_2:+69525380 | None:intergenic |
| TTCGTTGCAACAAAACCAGC+TGG | 0.501585 | 4_2:+69522079 | None:intergenic |
| TCCCTAGACGAAGAAGGAAA+AGG | 0.502428 | 4_2:+69525432 | None:intergenic |
| GTGCATGCGTGTTCATCCTA+TGG | 0.502901 | 4_2:-69525065 | Msa0618580:CDS |
| TCATAGCTTCTCTTAACCAT+AGG | 0.504328 | 4_2:+69525049 | None:intergenic |
| CTGAACAACACCTGAGACAC+AGG | 0.506289 | 4_2:+69521488 | None:intergenic |
| CGTTGATCAATGGTGGAACA+AGG | 0.508695 | 4_2:+69525406 | None:intergenic |
| CTGAGCCACGTTTCACTCGA+TGG | 0.510830 | 4_2:-69521603 | Msa0618580:CDS |
| AGTTGCAATACTGCCCCAGC+TGG | 0.517340 | 4_2:-69522094 | Msa0618580:CDS |
| TTCGTTAGTGGGGTAGATGT+GGG | 0.518486 | 4_2:-69521199 | Msa0618580:three_prime_UTR |
| AACTATACAATCCCATGGAA+TGG | 0.521770 | 4_2:+69521045 | None:intergenic |
| AGTCTTCATTGCTAGTTCGT+TGG | 0.524045 | 4_2:-69525098 | Msa0618580:CDS |
| CCACGTTTCACTCGATGGAT+AGG | 0.526685 | 4_2:-69521598 | Msa0618580:intron |
| TCTACCCCACTAACGAATAG+AGG | 0.532931 | 4_2:+69521205 | None:intergenic |
| CAGCAGGGACTCGCCTAACA+AGG | 0.541105 | 4_2:+69521274 | None:intergenic |
| GATAATGACGAAAAGTATCA+AGG | 0.541133 | 4_2:+69525020 | None:intergenic |
| GATATTTCATTGCTATGAGG+TGG | 0.550588 | 4_2:+69521130 | None:intergenic |
| GATTCAGGTCTCCATTCCAT+GGG | 0.561253 | 4_2:-69521056 | Msa0618580:three_prime_UTR |
| TATATTGGAAAACTCTAACT+AGG | 0.567233 | 4_2:+69520949 | None:intergenic |
| CTAACGAATAGAGGCAGAGT+TGG | 0.580328 | 4_2:+69521214 | None:intergenic |
| AATCTTGAGATAATTCAAGC+AGG | 0.588695 | 4_2:+69521313 | None:intergenic |
| CTTCAAACTATACAATCCCA+TGG | 0.590626 | 4_2:+69521040 | None:intergenic |
| TTAAATTGCAGTGCGTATCG+TGG | 0.598999 | 4_2:-69521661 | Msa0618580:intron |
| CGAGAAATTCACCTTCCTTG+AGG | 0.604093 | 4_2:-69524957 | Msa0618580:intron |
| TCGTTGCAACAAAACCAGCT+GGG | 0.607236 | 4_2:+69522080 | None:intergenic |
| ATGGTTGCGTTGATCAATGG+TGG | 0.612571 | 4_2:+69525399 | None:intergenic |
| ATGAACATCTTCAGACTCGC+CGG | 0.613512 | 4_2:-69525378 | Msa0618580:CDS |
| ATAGAAAGGGACCTCAAGGA+AGG | 0.624693 | 4_2:+69524946 | None:intergenic |
| GAGGAGATGAGTCATGTCAC+CGG | 0.626170 | 4_2:+69525359 | None:intergenic |
| TCTGCCTCTATTCGTTAGTG+GGG | 0.646805 | 4_2:-69521209 | Msa0618580:three_prime_UTR |
| TACGCTCTTAAATTCCAGCA+GGG | 0.649130 | 4_2:+69521259 | None:intergenic |
| CCTATCCATCGAGTGAAACG+TGG | 0.656144 | 4_2:+69521598 | None:intergenic |
| CGTTGCAACAAAACCAGCTG+GGG | 0.659984 | 4_2:+69522081 | None:intergenic |
| GGAGGAGAACGAGAATGCTG+AGG | 0.684833 | 4_2:+69525340 | None:intergenic |
| AACGTGGCTCAGTCAAATAG+CGG | 0.705507 | 4_2:+69521614 | None:intergenic |
| GAAATGTTGATAATTTGACT+GGG | 0.715465 | 4_2:-69522053 | Msa0618580:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTAGTATAATTTGAA+AGG | - | chr4_2:69523775-69523794 | Msa0618580:intron | 10.0% |
| !! | AATAAGGCTATAAAATAAAA+AGG | - | chr4_2:69522076-69522095 | Msa0618580:CDS | 15.0% |
| !! | GATAATTATTAAAAGAAACA+TGG | - | chr4_2:69522165-69522184 | Msa0618580:intron | 15.0% |
| !!! | TTGATAATTGATATATGTAA+TGG | - | chr4_2:69524501-69524520 | Msa0618580:intron | 15.0% |
| !!! | ATTTGAAAATGTTGTTTATT+TGG | - | chr4_2:69524532-69524551 | Msa0618580:intron | 15.0% |
| !!! | ATTTTTTTCTCTTCAATTTC+AGG | - | chr4_2:69521160-69521179 | Msa0618580:three_prime_UTR | 20.0% |
| !! | CTTCATAAACGTATTATAAA+CGG | + | chr4_2:69521263-69521282 | None:intergenic | 20.0% |
| !! | ATAAGATTCATAGATAGAAA+GGG | + | chr4_2:69521453-69521472 | None:intergenic | 20.0% |
| !! | ATTACAGTATGAGTAAAATA+AGG | - | chr4_2:69522060-69522079 | Msa0618580:CDS | 20.0% |
| !! | GCATTAAATAGTTAGAAAAA+GGG | + | chr4_2:69522262-69522281 | None:intergenic | 20.0% |
| !! | TGCATTAAATAGTTAGAAAA+AGG | + | chr4_2:69522263-69522282 | None:intergenic | 20.0% |
| !! | TTAAAAAAATTCAAACAGGT+CGG | + | chr4_2:69522473-69522492 | None:intergenic | 20.0% |
| !! | TGAATAAATAAAACAGAAAC+TGG | + | chr4_2:69522536-69522555 | None:intergenic | 20.0% |
| !! | TGAACAAATCAACTTAATTT+AGG | + | chr4_2:69522871-69522890 | None:intergenic | 20.0% |
| !!! | TTTTTATCGCAATTTCAAAA+GGG | + | chr4_2:69523229-69523248 | None:intergenic | 20.0% |
| !!! | TTTTTTATCGCAATTTCAAA+AGG | + | chr4_2:69523230-69523249 | None:intergenic | 20.0% |
| !!! | TTAGTTCTATAAACCAATTT+TGG | + | chr4_2:69523305-69523324 | None:intergenic | 20.0% |
| !! | GAAACTAACAAAAAAAAACA+GGG | + | chr4_2:69523331-69523350 | None:intergenic | 20.0% |
| !! | TGAAACTAACAAAAAAAAAC+AGG | + | chr4_2:69523332-69523351 | None:intergenic | 20.0% |
| !!! | GTTTTTTTTTGTTAGTTTCA+TGG | - | chr4_2:69523332-69523351 | Msa0618580:intron | 20.0% |
| !!! | AGAACAAGTTTTTAATCAAA+TGG | - | chr4_2:69523750-69523769 | Msa0618580:intron | 20.0% |
| !! | TTTAGTATAATTTGAAAGGA+TGG | - | chr4_2:69523779-69523798 | Msa0618580:intron | 20.0% |
| !! | CACTGCAATTTAAAAATAAA+TGG | + | chr4_2:69524715-69524734 | None:intergenic | 20.0% |
| !! | AGGTAAACAATATTTATTTG+TGG | - | chr4_2:69524957-69524976 | Msa0618580:intron | 20.0% |
| !!! | ATTGTATAGTTTGAAGTTTA+TGG | - | chr4_2:69525350-69525369 | Msa0618580:CDS | 20.0% |
| !!! | GTTTTCCAATATATCAAAAT+CGG | - | chr4_2:69525444-69525463 | Msa0618580:five_prime_UTR | 20.0% |
| ! | TTAGTGAAAGTGATGAATTA+GGG | + | chr4_2:69521128-69521147 | None:intergenic | 25.0% |
| ! | CATAAGATTCATAGATAGAA+AGG | + | chr4_2:69521454-69521473 | None:intergenic | 25.0% |
| ! | ATGGTATGAAAGTAAACAAT+TGG | + | chr4_2:69521698-69521717 | None:intergenic | 25.0% |
| !!! | GTTGTATTTGCTATGATATA+TGG | - | chr4_2:69521766-69521785 | Msa0618580:intron | 25.0% |
| !!! | ACATTTCTAGATGATTGTTT+TGG | - | chr4_2:69521791-69521810 | Msa0618580:intron | 25.0% |
| !!! | TGTTTTTATTGTTTGGACTT+TGG | - | chr4_2:69521903-69521922 | Msa0618580:intron | 25.0% |
| ! | TATATGATGATATGATCTCT+TGG | - | chr4_2:69521932-69521951 | Msa0618580:intron | 25.0% |
| ! | ATATGATGATATGATCTCTT+GGG | - | chr4_2:69521933-69521952 | Msa0618580:intron | 25.0% |
| !! | TTTTACTCATACTGTAATGT+TGG | + | chr4_2:69522058-69522077 | None:intergenic | 25.0% |
| ! | TAAAAAAATTCAAACAGGTC+GGG | + | chr4_2:69522472-69522491 | None:intergenic | 25.0% |
| !!! | GGCTTTAAAAAAATTCAAAC+AGG | + | chr4_2:69522477-69522496 | None:intergenic | 25.0% |
| !!! | GAATTTTTTTAAAGCCTTTG+TGG | - | chr4_2:69522481-69522500 | Msa0618580:intron | 25.0% |
| ! | TAAATAACCAATAACAGCAA+CGG | + | chr4_2:69522842-69522861 | None:intergenic | 25.0% |
| ! | TTAAAGTCATAACTATAAGG+TGG | + | chr4_2:69522937-69522956 | None:intergenic | 25.0% |
| ! | GACTTAAAGTCATAACTATA+AGG | + | chr4_2:69522940-69522959 | None:intergenic | 25.0% |
| ! | TATGCATAAAAATCAACACT+CGG | + | chr4_2:69523017-69523036 | None:intergenic | 25.0% |
| !!! | TGTGTTTTTGTTTTGAATGT+TGG | - | chr4_2:69523272-69523291 | Msa0618580:intron | 25.0% |
| !!! | TTTTTTGTTAGTTTCATGGT+TGG | - | chr4_2:69523336-69523355 | Msa0618580:intron | 25.0% |
| ! | TATGCATTTGAAGGAATTAA+AGG | + | chr4_2:69523417-69523436 | None:intergenic | 25.0% |
| ! | TTAGATGATTATGCATTTGA+AGG | + | chr4_2:69523426-69523445 | None:intergenic | 25.0% |
| ! | ATGAAATGAAACTTATCCAT+AGG | + | chr4_2:69523452-69523471 | None:intergenic | 25.0% |
| ! | ATAAAGAAATGACTTTACAG+TGG | + | chr4_2:69523599-69523618 | None:intergenic | 25.0% |
| ! | ATATCTTTGTCCAAAATGTT+TGG | + | chr4_2:69523828-69523847 | None:intergenic | 25.0% |
| ! | TTTACTAGTAATGACAAAGT+TGG | - | chr4_2:69523919-69523938 | Msa0618580:intron | 25.0% |
| ! | AAGATTTGAAAACAATTGAC+AGG | + | chr4_2:69524078-69524097 | None:intergenic | 25.0% |
| !!! | GAAATGTTGATAATTTGACT+GGG | - | chr4_2:69524330-69524349 | Msa0618580:intron | 25.0% |
| ! | ATAAAGCAGTCAAAACATAA+AGG | + | chr4_2:69524418-69524437 | None:intergenic | 25.0% |
| ! | AGAGAAAATACATTTCTTAG+AGG | + | chr4_2:69524479-69524498 | None:intergenic | 25.0% |
| ! | ATTATACCGATACAACAAAT+AGG | - | chr4_2:69524994-69525013 | Msa0618580:CDS | 25.0% |
| !!! | ATGTTACCTATTTGTTGTAT+CGG | + | chr4_2:69525003-69525022 | None:intergenic | 25.0% |
| !!! | TACGTTTTATTTCTAGATTC+AGG | - | chr4_2:69525312-69525331 | Msa0618580:CDS | 25.0% |
| ! | TATATTGGAAAACTCTAACT+AGG | + | chr4_2:69525437-69525456 | None:intergenic | 25.0% |
| GTTAGTGAAAGTGATGAATT+AGG | + | chr4_2:69521129-69521148 | None:intergenic | 30.0% | |
| !! | GATAATGACGAAAAGTATCA+AGG | + | chr4_2:69521366-69521385 | None:intergenic | 30.0% |
| ATGAGACGGAAACATAAAAA+TGG | + | chr4_2:69521717-69521736 | None:intergenic | 30.0% | |
| !! | GTCCTGATGTTTTTATTGTT+TGG | - | chr4_2:69521896-69521915 | Msa0618580:intron | 30.0% |
| GTCCAAACAATAAAAACATC+AGG | + | chr4_2:69521901-69521920 | None:intergenic | 30.0% | |
| ATTGCAAACATAGAGAAGTA+GGG | - | chr4_2:69521994-69522013 | Msa0618580:intron | 30.0% | |
| !! | AAAGGATTAGCTGAAAAAAC+AGG | - | chr4_2:69522094-69522113 | Msa0618580:CDS | 30.0% |
| GGCAAAAAGCAATAAATGTT+GGG | + | chr4_2:69522241-69522260 | None:intergenic | 30.0% | |
| TGTTTACACAGAATCATGAT+TGG | - | chr4_2:69522365-69522384 | Msa0618580:intron | 30.0% | |
| GTTTACACAGAATCATGATT+GGG | - | chr4_2:69522366-69522385 | Msa0618580:intron | 30.0% | |
| !!! | AGATTCAGTTTTGAGATGAA+GGG | + | chr4_2:69522595-69522614 | None:intergenic | 30.0% |
| !!! | GGATTTTGGTTGTAAAAACA+GGG | + | chr4_2:69522752-69522771 | None:intergenic | 30.0% |
| !!! | AGGATTTTGGTTGTAAAAAC+AGG | + | chr4_2:69522753-69522772 | None:intergenic | 30.0% |
| GACTTGTGAAATTGAGTTAT+TGG | - | chr4_2:69522892-69522911 | Msa0618580:intron | 30.0% | |
| ACAATTCATGTTATGAGTTC+AGG | - | chr4_2:69523068-69523087 | Msa0618580:intron | 30.0% | |
| ! | GTTTTACGATTTTACTACCT+TGG | - | chr4_2:69523090-69523109 | Msa0618580:intron | 30.0% |
| ATAAAACTCATGCATTACCA+AGG | + | chr4_2:69523110-69523129 | None:intergenic | 30.0% | |
| ! | TTTGTTCAGCTTTCCTATTT+TGG | - | chr4_2:69523129-69523148 | Msa0618580:intron | 30.0% |
| ! | ATAGCAAAGCATTCCAAAAT+AGG | + | chr4_2:69523145-69523164 | None:intergenic | 30.0% |
| CATAATCATCTAAAAGCCTA+TGG | - | chr4_2:69523433-69523452 | Msa0618580:intron | 30.0% | |
| ATGACTTTACAGTGGAAAAA+GGG | + | chr4_2:69523591-69523610 | None:intergenic | 30.0% | |
| AATGACTTTACAGTGGAAAA+AGG | + | chr4_2:69523592-69523611 | None:intergenic | 30.0% | |
| ! | AGTGTTTAAGCCAAACATTT+TGG | - | chr4_2:69523815-69523834 | Msa0618580:intron | 30.0% |
| GAAATAGAAATCATATCACC+AGG | + | chr4_2:69523974-69523993 | None:intergenic | 30.0% | |
| ATGCATAGCTAAAAAAAAGG+AGG | + | chr4_2:69524037-69524056 | None:intergenic | 30.0% | |
| GTGATGCATAGCTAAAAAAA+AGG | + | chr4_2:69524040-69524059 | None:intergenic | 30.0% | |
| ! | AACAATTGACAGGTTTTCTA+TGG | + | chr4_2:69524068-69524087 | None:intergenic | 30.0% |
| TATGTCAATTTCAGATCTTC+TGG | - | chr4_2:69524243-69524262 | Msa0618580:intron | 30.0% | |
| ATGTCAATTTCAGATCTTCT+GGG | - | chr4_2:69524244-69524263 | Msa0618580:intron | 30.0% | |
| !! | GGAAATGTTGATAATTTGAC+TGG | - | chr4_2:69524329-69524348 | Msa0618580:intron | 30.0% |
| GGCAATATGTATTCTTTCTT+GGG | - | chr4_2:69524351-69524370 | Msa0618580:intron | 30.0% | |
| ! | TGTTGTTTATTTGGCTGAAT+TGG | - | chr4_2:69524541-69524560 | Msa0618580:intron | 30.0% |
| ! | GTGGATTATACATTCTCAAT+TGG | - | chr4_2:69524741-69524760 | Msa0618580:intron | 30.0% |
| AATCAGAATATCTCAAGAGT+AGG | + | chr4_2:69524857-69524876 | None:intergenic | 30.0% | |
| TACTCTTGAGATATTCTGAT+TGG | - | chr4_2:69524856-69524875 | Msa0618580:intron | 30.0% | |
| TCTTCTACTATTACTTCATC+AGG | - | chr4_2:69524937-69524956 | Msa0618580:intron | 30.0% | |
| TACAACAAATAGGTAACATC+AGG | - | chr4_2:69525004-69525023 | Msa0618580:CDS | 30.0% | |
| AATCTTGAGATAATTCAAGC+AGG | + | chr4_2:69525073-69525092 | None:intergenic | 30.0% | |
| ! | TAGAAATTTAGCTCCTTGTT+AGG | - | chr4_2:69525096-69525115 | Msa0618580:CDS | 30.0% |
| !! | AAGTTTATGGTAGCTGATTT+TGG | - | chr4_2:69525363-69525382 | Msa0618580:CDS | 30.0% |
| GGTTATGATTGATATGATCA+TGG | - | chr4_2:69525384-69525403 | Msa0618580:exon | 30.0% | |
| !!! | CAATGCCGATTTTGATATAT+TGG | + | chr4_2:69525452-69525471 | None:intergenic | 30.0% |
| CAATATATCAAAATCGGCAT+TGG | - | chr4_2:69525450-69525469 | Msa0618580:five_prime_UTR | 30.0% | |
| !!! | ATTTGGTAGCGTAGATTTTG+AGG | + | chr4_2:69521067-69521086 | None:intergenic | 35.0% |
| ATTGTGACCTGAACATGATT+TGG | + | chr4_2:69521084-69521103 | None:intergenic | 35.0% | |
| TAGGGATTGTGAAATGTGAA+GGG | + | chr4_2:69521110-69521129 | None:intergenic | 35.0% | |
| TTAGGGATTGTGAAATGTGA+AGG | + | chr4_2:69521111-69521130 | None:intergenic | 35.0% | |
| TGTGTTCTTAGCACGTTATT+TGG | - | chr4_2:69521216-69521235 | Msa0618580:three_prime_UTR | 35.0% | |
| ACGTTATTTGGATCTGTTCA+CGG | - | chr4_2:69521228-69521247 | Msa0618580:three_prime_UTR | 35.0% | |
| TCATAGCTTCTCTTAACCAT+AGG | + | chr4_2:69521337-69521356 | None:intergenic | 35.0% | |
| !!! | AAGTGTTGGTGCTACATTTT+CGG | - | chr4_2:69521649-69521668 | Msa0618580:CDS | 35.0% |
| AAATACAACACATCCTCGAA+TGG | + | chr4_2:69521755-69521774 | None:intergenic | 35.0% | |
| !!! | TTCTAGATGATTGTTTTGGC+TGG | - | chr4_2:69521795-69521814 | Msa0618580:intron | 35.0% |
| CATTGCAAACATAGAGAAGT+AGG | - | chr4_2:69521993-69522012 | Msa0618580:intron | 35.0% | |
| TTGCAAACATAGAGAAGTAG+GGG | - | chr4_2:69521995-69522014 | Msa0618580:intron | 35.0% | |
| GGGCAAAAAGCAATAAATGT+TGG | + | chr4_2:69522242-69522261 | None:intergenic | 35.0% | |
| TACTGAAATCGGAAAGAACA+TGG | + | chr4_2:69522437-69522456 | None:intergenic | 35.0% | |
| TTCTTTCCGATTTCAGTAAC+TGG | - | chr4_2:69522439-69522458 | Msa0618580:intron | 35.0% | |
| TCTTTCCGATTTCAGTAACT+GGG | - | chr4_2:69522440-69522459 | Msa0618580:intron | 35.0% | |
| !!! | AGGGAATTGGTTTTTAGCAA+GGG | + | chr4_2:69522576-69522595 | None:intergenic | 35.0% |
| !!! | AAGGGAATTGGTTTTTAGCA+AGG | + | chr4_2:69522577-69522596 | None:intergenic | 35.0% |
| !!! | AGTTTTGAGATGAAGGGAAT+TGG | + | chr4_2:69522589-69522608 | None:intergenic | 35.0% |
| !!! | CAGATTCAGTTTTGAGATGA+AGG | + | chr4_2:69522596-69522615 | None:intergenic | 35.0% |
| CAAAAATAGAGCACAAGAGA+GGG | + | chr4_2:69522648-69522667 | None:intergenic | 35.0% | |
| ACAAAAATAGAGCACAAGAG+AGG | + | chr4_2:69522649-69522668 | None:intergenic | 35.0% | |
| AAAACAAGCAACAACAGAAG+AGG | + | chr4_2:69522773-69522792 | None:intergenic | 35.0% | |
| !!! | CTGTTCTTTTCTAGAGTTCT+TGG | + | chr4_2:69523647-69523666 | None:intergenic | 35.0% |
| CTTAAACACTGCATGATACT+TGG | + | chr4_2:69523805-69523824 | None:intergenic | 35.0% | |
| AAATTCATGCCATCTTCTTC+TGG | - | chr4_2:69523883-69523902 | Msa0618580:intron | 35.0% | |
| GTGGGATAAAATGAATTTCC+TGG | - | chr4_2:69523953-69523972 | Msa0618580:intron | 35.0% | |
| TTCTATTTCCTTCTTCCGTA+TGG | - | chr4_2:69523985-69524004 | Msa0618580:intron | 35.0% | |
| AATAGAATTCAGTACGGACA+GGG | + | chr4_2:69524122-69524141 | None:intergenic | 35.0% | |
| TAATAGAATTCAGTACGGAC+AGG | + | chr4_2:69524123-69524142 | None:intergenic | 35.0% | |
| GCACGTAATAGAATTCAGTA+CGG | + | chr4_2:69524128-69524147 | None:intergenic | 35.0% | |
| ! | CTGGGCATTTTCAATATACT+TGG | - | chr4_2:69524262-69524281 | Msa0618580:intron | 35.0% |
| ! | GGCATTTTCAATATACTTGG+AGG | - | chr4_2:69524265-69524284 | Msa0618580:intron | 35.0% |
| GGGCAATATGTATTCTTTCT+TGG | - | chr4_2:69524350-69524369 | Msa0618580:intron | 35.0% | |
| AAGCAGTCAAAACATAAAGG+TGG | + | chr4_2:69524415-69524434 | None:intergenic | 35.0% | |
| ACATTTCTTAGAGGACAATC+AGG | + | chr4_2:69524470-69524489 | None:intergenic | 35.0% | |
| !!! | CAGGAATTTTGTTTTGCAGT+TGG | - | chr4_2:69525023-69525042 | Msa0618580:CDS | 35.0% |
| ! | TTTTCTAGGTAAGGGGTAAA+TGG | - | chr4_2:69525207-69525226 | Msa0618580:intron | 35.0% |
| TTTCTAGGTAAGGGGTAAAT+GGG | - | chr4_2:69525208-69525227 | Msa0618580:intron | 35.0% | |
| GATATTTCATTGCTATGAGG+TGG | + | chr4_2:69525256-69525275 | None:intergenic | 35.0% | |
| CCTGATATTTCATTGCTATG+AGG | + | chr4_2:69525259-69525278 | None:intergenic | 35.0% | |
| CCTCATAGCAATGAAATATC+AGG | - | chr4_2:69525256-69525275 | Msa0618580:intron | 35.0% | |
| AACTATACAATCCCATGGAA+TGG | + | chr4_2:69525341-69525360 | None:intergenic | 35.0% | |
| CTTCAAACTATACAATCCCA+TGG | + | chr4_2:69525346-69525365 | None:intergenic | 35.0% | |
| CATTGTCACTCAGAACTAAT+AGG | - | chr4_2:69525475-69525494 | Msa0618580:five_prime_UTR | 35.0% | |
| ! | TTCCTTTTCCTTCTTCGTCT+AGG | - | chr4_2:69520949-69520968 | Msa0618580:three_prime_UTR | 40.0% |
| ! | TCCTTTTCCTTCTTCGTCTA+GGG | - | chr4_2:69520950-69520969 | Msa0618580:three_prime_UTR | 40.0% |
| ! | TTCATGGTTGCGTTGATCAA+TGG | + | chr4_2:69520990-69521009 | None:intergenic | 40.0% |
| TACGCTACCAAATCATGTTC+AGG | - | chr4_2:69521074-69521093 | Msa0618580:three_prime_UTR | 40.0% | |
| AGGGATTGTGAAATGTGAAG+GGG | + | chr4_2:69521109-69521128 | None:intergenic | 40.0% | |
| AGTCTTCATTGCTAGTTCGT+TGG | - | chr4_2:69521285-69521304 | Msa0618580:three_prime_UTR | 40.0% | |
| ! | CTAGTTCGTTGGCTATTGTT+TGG | - | chr4_2:69521296-69521315 | Msa0618580:three_prime_UTR | 40.0% |
| ATAGATAGAAAGGGACCTCA+AGG | + | chr4_2:69521444-69521463 | None:intergenic | 40.0% | |
| !!! | AGTGTTGGTGCTACATTTTC+GGG | - | chr4_2:69521650-69521669 | Msa0618580:CDS | 40.0% |
| TTTCGCAGATGCAAATGAGA+CGG | + | chr4_2:69521731-69521750 | None:intergenic | 40.0% | |
| ATTTGAGTGACGCTTAACCT+AGG | - | chr4_2:69521852-69521871 | Msa0618580:intron | 40.0% | |
| TTTGAGTGACGCTTAACCTA+GGG | - | chr4_2:69521853-69521872 | Msa0618580:intron | 40.0% | |
| !! | TCTTGGGCATTTTGTTTCGA+GGG | - | chr4_2:69521949-69521968 | Msa0618580:intron | 40.0% |
| CTTCTCTATGTTTGCAATGC+AGG | + | chr4_2:69521992-69522011 | None:intergenic | 40.0% | |
| TCGTACAAGTCTACGATTTC+TGG | - | chr4_2:69522325-69522344 | Msa0618580:intron | 40.0% | |
| TCTGTCCCAGTTACTGAAAT+CGG | + | chr4_2:69522448-69522467 | None:intergenic | 40.0% | |
| GTAAAAACAGGGTACAAGAG+AGG | + | chr4_2:69522741-69522760 | None:intergenic | 40.0% | |
| ! | GCAACAACAGAAGAGGATTT+TGG | + | chr4_2:69522766-69522785 | None:intergenic | 40.0% |
| ! | TCTAACTCCGTTGCTGTTAT+TGG | - | chr4_2:69522832-69522851 | Msa0618580:intron | 40.0% |
| ! | TGTTGGAGCATCTCCAAAAT+TGG | - | chr4_2:69523289-69523308 | Msa0618580:intron | 40.0% |
| ! | TGTTAGTTTCATGGTTGGAG+AGG | - | chr4_2:69523341-69523360 | Msa0618580:intron | 40.0% |
| TTTCATGGTTGGAGAGGAAT+GGG | - | chr4_2:69523347-69523366 | Msa0618580:intron | 40.0% | |
| ! | ATTTTATCCCACACTGTGAG+CGG | + | chr4_2:69523945-69523964 | None:intergenic | 40.0% |
| CAGGGAATATATTCTTGGAC+AGG | + | chr4_2:69524104-69524123 | None:intergenic | 40.0% | |
| ACGGACAGGGAATATATTCT+TGG | + | chr4_2:69524109-69524128 | None:intergenic | 40.0% | |
| TTAAATTGCAGTGCGTATCG+TGG | - | chr4_2:69524722-69524741 | Msa0618580:intron | 40.0% | |
| TACGCTCTTAAATTCCAGCA+GGG | + | chr4_2:69525127-69525146 | None:intergenic | 40.0% | |
| TTACGCTCTTAAATTCCAGC+AGG | + | chr4_2:69525128-69525147 | None:intergenic | 40.0% | |
| ! | AGATGTGGGTTTTCTAGGTA+AGG | - | chr4_2:69525198-69525217 | Msa0618580:CDS | 40.0% |
| ! | GATGTGGGTTTTCTAGGTAA+GGG | - | chr4_2:69525199-69525218 | Msa0618580:CDS | 40.0% |
| ! | ATGTGGGTTTTCTAGGTAAG+GGG | - | chr4_2:69525200-69525219 | Msa0618580:CDS | 40.0% |
| ACGCACGAAACGCTAATTAC+AGG | + | chr4_2:69520922-69520941 | None:intergenic | 45.0% | |
| TCCCTAGACGAAGAAGGAAA+AGG | + | chr4_2:69520954-69520973 | None:intergenic | 45.0% | |
| ! | AGGTTTTCCCTAGACGAAGA+AGG | + | chr4_2:69520960-69520979 | None:intergenic | 45.0% |
| ! | CGTTGATCAATGGTGGAACA+AGG | + | chr4_2:69520980-69520999 | None:intergenic | 45.0% |
| ! | ATGGTTGCGTTGATCAATGG+TGG | + | chr4_2:69520987-69521006 | None:intergenic | 45.0% |
| ATGAACATCTTCAGACTCGC+CGG | - | chr4_2:69521005-69521024 | Msa0618580:three_prime_UTR | 45.0% | |
| !! | TGGTAGCGTAGATTTTGAGG+AGG | + | chr4_2:69521064-69521083 | None:intergenic | 45.0% |
| !! | TGTTGCTGCTAGCTTTCTTC+TGG | - | chr4_2:69521390-69521409 | Msa0618580:intron | 45.0% |
| CGAGAAATTCACCTTCCTTG+AGG | - | chr4_2:69521426-69521445 | Msa0618580:intron | 45.0% | |
| ATAGAAAGGGACCTCAAGGA+AGG | + | chr4_2:69521440-69521459 | None:intergenic | 45.0% | |
| TGACACTGACAGTTTGACAC+TGG | - | chr4_2:69521552-69521571 | Msa0618580:intron | 45.0% | |
| TGTAGCACCAACACTTCTGA+TGG | + | chr4_2:69521645-69521664 | None:intergenic | 45.0% | |
| TAACCTAGGGAACAGGGTTA+TGG | - | chr4_2:69521866-69521885 | Msa0618580:intron | 45.0% | |
| AATCCATAACCCTGTTCCCT+AGG | + | chr4_2:69521872-69521891 | None:intergenic | 45.0% | |
| !! | CTCTTGGGCATTTTGTTTCG+AGG | - | chr4_2:69521948-69521967 | Msa0618580:intron | 45.0% |
| GAAGTAGGGGTAACCAACAA+TGG | - | chr4_2:69522008-69522027 | Msa0618580:intron | 45.0% | |
| GTAACCAACAATGGTGGCTA+GGG | - | chr4_2:69522017-69522036 | Msa0618580:intron | 45.0% | |
| ATAACCCTAGCCACCATTGT+TGG | + | chr4_2:69522024-69522043 | None:intergenic | 45.0% | |
| !! | TCTACGATTTCTGGAGTGCT+TGG | - | chr4_2:69522334-69522353 | Msa0618580:intron | 45.0% |
| !! | ACTGGTCTTATTGCCAAACC+AGG | + | chr4_2:69522518-69522537 | None:intergenic | 45.0% |
| GTACAAGAGAGGATGTGTTC+TGG | + | chr4_2:69522730-69522749 | None:intergenic | 45.0% | |
| GTTTCATGGTTGGAGAGGAA+TGG | - | chr4_2:69523346-69523365 | Msa0618580:intron | 45.0% | |
| GGAGACTGAACACTGTGATT+CGG | - | chr4_2:69523372-69523391 | Msa0618580:intron | 45.0% | |
| GAATTGCAGCCAGAAGAAGA+TGG | + | chr4_2:69523895-69523914 | None:intergenic | 45.0% | |
| ! | CTTCTTCTGGCTGCAATTCA+TGG | - | chr4_2:69523896-69523915 | Msa0618580:intron | 45.0% |
| AGCAGATTCCATACGGAAGA+AGG | + | chr4_2:69523996-69524015 | None:intergenic | 45.0% | |
| TAACGAATGCTGCGTTGAAG+TGG | - | chr4_2:69524194-69524213 | Msa0618580:intron | 45.0% | |
| TCGTTGCAACAAAACCAGCT+GGG | + | chr4_2:69524306-69524325 | None:intergenic | 45.0% | |
| TTCGTTGCAACAAAACCAGC+TGG | + | chr4_2:69524307-69524326 | None:intergenic | 45.0% | |
| !!! | CTGGTTTTGTTGCAACGAAG+TGG | - | chr4_2:69524308-69524327 | Msa0618580:intron | 45.0% |
| AACGTGGCTCAGTCAAATAG+CGG | + | chr4_2:69524772-69524791 | None:intergenic | 45.0% | |
| CTAACGAATAGAGGCAGAGT+TGG | + | chr4_2:69525172-69525191 | None:intergenic | 45.0% | |
| ACTCTGCCTCTATTCGTTAG+TGG | - | chr4_2:69525172-69525191 | Msa0618580:CDS | 45.0% | |
| CTCTGCCTCTATTCGTTAGT+GGG | - | chr4_2:69525173-69525192 | Msa0618580:CDS | 45.0% | |
| TCTGCCTCTATTCGTTAGTG+GGG | - | chr4_2:69525174-69525193 | Msa0618580:CDS | 45.0% | |
| TCTACCCCACTAACGAATAG+AGG | + | chr4_2:69525181-69525200 | None:intergenic | 45.0% | |
| ATTCGTTAGTGGGGTAGATG+TGG | - | chr4_2:69525183-69525202 | Msa0618580:CDS | 45.0% | |
| TTCGTTAGTGGGGTAGATGT+GGG | - | chr4_2:69525184-69525203 | Msa0618580:CDS | 45.0% | |
| AGATTCAGGTCTCCATTCCA+TGG | - | chr4_2:69525326-69525345 | Msa0618580:CDS | 45.0% | |
| GATTCAGGTCTCCATTCCAT+GGG | - | chr4_2:69525327-69525346 | Msa0618580:CDS | 45.0% | |
| GGCGAGTCTGAAGATGTTCA+TGG | + | chr4_2:69521006-69521025 | None:intergenic | 50.0% | |
| GAGGAGATGAGTCATGTCAC+CGG | + | chr4_2:69521027-69521046 | None:intergenic | 50.0% | |
| GTGCATGCGTGTTCATCCTA+TGG | - | chr4_2:69521318-69521337 | Msa0618580:exon | 50.0% | |
| ! | CACTTCTGATGGATGCGTGT+TGG | + | chr4_2:69521634-69521653 | None:intergenic | 50.0% |
| ! | CACGCATCCATCAGAAGTGT+TGG | - | chr4_2:69521635-69521654 | Msa0618580:CDS | 50.0% |
| TGACGCTTAACCTAGGGAAC+AGG | - | chr4_2:69521859-69521878 | Msa0618580:intron | 50.0% | |
| GACGCTTAACCTAGGGAACA+GGG | - | chr4_2:69521860-69521879 | Msa0618580:intron | 50.0% | |
| GTAGGGGTAACCAACAATGG+TGG | - | chr4_2:69522011-69522030 | Msa0618580:intron | 50.0% | |
| GGTAACCAACAATGGTGGCT+AGG | - | chr4_2:69522016-69522035 | Msa0618580:intron | 50.0% | |
| AAGATCGCGTGAAATCGCTG+TGG | - | chr4_2:69522390-69522409 | Msa0618580:intron | 50.0% | |
| AGGTCAGAGTTCAGCCACAA+AGG | + | chr4_2:69522498-69522517 | None:intergenic | 50.0% | |
| TTTGTGGCTGAACTCTGACC+TGG | - | chr4_2:69522497-69522516 | Msa0618580:intron | 50.0% | |
| TAGCAAGGGAAACGACGCAA+CGG | + | chr4_2:69522562-69522581 | None:intergenic | 50.0% | |
| CGCGTAGAAGCAGAAGATGT+TGG | + | chr4_2:69522695-69522714 | None:intergenic | 50.0% | |
| ATGGTTGGAGAGGAATGGGT+TGG | - | chr4_2:69523351-69523370 | Msa0618580:intron | 50.0% | |
| CAGCTGCAGCAGATTCCATA+CGG | + | chr4_2:69524003-69524022 | None:intergenic | 50.0% | |
| CGTTGCAACAAAACCAGCTG+GGG | + | chr4_2:69524305-69524324 | None:intergenic | 50.0% | |
| CCTATCCATCGAGTGAAACG+TGG | + | chr4_2:69524788-69524807 | None:intergenic | 50.0% | |
| CCACGTTTCACTCGATGGAT+AGG | - | chr4_2:69524785-69524804 | Msa0618580:intron | 50.0% | |
| ! | GTTTTTGCAGCCTGTGTCTC+AGG | - | chr4_2:69524885-69524904 | Msa0618580:intron | 50.0% |
| CTGAACAACACCTGAGACAC+AGG | + | chr4_2:69524898-69524917 | None:intergenic | 50.0% | |
| ! | GGGGTAGATGTGGGTTTTCT+AGG | - | chr4_2:69525193-69525212 | Msa0618580:CDS | 50.0% |
| GGAGGAGAACGAGAATGCTG+AGG | + | chr4_2:69521046-69521065 | None:intergenic | 55.0% | |
| GCATCTGCGAAAGCCATTCG+AGG | - | chr4_2:69521739-69521758 | Msa0618580:intron | 55.0% | |
| GGCTGAACTCTGACCTGGTT+TGG | - | chr4_2:69522502-69522521 | Msa0618580:intron | 55.0% | |
| AGCAAGGGAAACGACGCAAC+GGG | + | chr4_2:69522561-69522580 | None:intergenic | 55.0% | |
| AAAGTTGGCCGCTCACAGTG+TGG | - | chr4_2:69523934-69523953 | Msa0618580:intron | 55.0% | |
| AAGTTGGCCGCTCACAGTGT+GGG | - | chr4_2:69523935-69523954 | Msa0618580:intron | 55.0% | |
| AGTTGCAATACTGCCCCAGC+TGG | - | chr4_2:69524289-69524308 | Msa0618580:intron | 55.0% | |
| CTGAGCCACGTTTCACTCGA+TGG | - | chr4_2:69524780-69524799 | Msa0618580:intron | 55.0% | |
| CAGCAGGGACTCGCCTAACA+AGG | + | chr4_2:69525112-69525131 | None:intergenic | 60.0% | |
| CTTGTTAGGCGAGTCCCTGC+TGG | - | chr4_2:69525110-69525129 | Msa0618580:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 69520875 | 69525530 | 69520875 | ID=Msa0618580;Name=Msa0618580 |
| chr4_2 | mRNA | 69520875 | 69525530 | 69520875 | ID=Msa0618580-mRNA-1;Parent=Msa0618580;Name=Msa0618580-mRNA-1;_AED=0.03;_eAED=0.03;_QI=130|1|1|1|1|1|6|452|215 |
| chr4_2 | exon | 69520875 | 69521363 | 69520875 | ID=Msa0618580-mRNA-1:exon:20124;Parent=Msa0618580-mRNA-1 |
| chr4_2 | exon | 69521447 | 69521510 | 69521447 | ID=Msa0618580-mRNA-1:exon:20123;Parent=Msa0618580-mRNA-1 |
| chr4_2 | exon | 69521599 | 69521672 | 69521599 | ID=Msa0618580-mRNA-1:exon:20122;Parent=Msa0618580-mRNA-1 |
| chr4_2 | exon | 69522033 | 69522148 | 69522033 | ID=Msa0618580-mRNA-1:exon:20121;Parent=Msa0618580-mRNA-1 |
| chr4_2 | exon | 69524958 | 69525223 | 69524958 | ID=Msa0618580-mRNA-1:exon:20120;Parent=Msa0618580-mRNA-1 |
| chr4_2 | exon | 69525310 | 69525530 | 69525310 | ID=Msa0618580-mRNA-1:exon:20119;Parent=Msa0618580-mRNA-1 |
| chr4_2 | five_prime_UTR | 69525401 | 69525530 | 69525401 | ID=Msa0618580-mRNA-1:five_prime_utr;Parent=Msa0618580-mRNA-1 |
| chr4_2 | CDS | 69525310 | 69525400 | 69525310 | ID=Msa0618580-mRNA-1:cds;Parent=Msa0618580-mRNA-1 |
| chr4_2 | CDS | 69524958 | 69525223 | 69524958 | ID=Msa0618580-mRNA-1:cds;Parent=Msa0618580-mRNA-1 |
| chr4_2 | CDS | 69522033 | 69522148 | 69522033 | ID=Msa0618580-mRNA-1:cds;Parent=Msa0618580-mRNA-1 |
| chr4_2 | CDS | 69521599 | 69521672 | 69521599 | ID=Msa0618580-mRNA-1:cds;Parent=Msa0618580-mRNA-1 |
| chr4_2 | CDS | 69521447 | 69521510 | 69521447 | ID=Msa0618580-mRNA-1:cds;Parent=Msa0618580-mRNA-1 |
| chr4_2 | CDS | 69521327 | 69521363 | 69521327 | ID=Msa0618580-mRNA-1:cds;Parent=Msa0618580-mRNA-1 |
| chr4_2 | three_prime_UTR | 69520875 | 69521326 | 69520875 | ID=Msa0618580-mRNA-1:three_prime_utr;Parent=Msa0618580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
