Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0701480 | XP_039685117.1 | 85.552 | 353 | 16 | 3 | 6 | 332 | 23 | 366 | 0.0 | 572 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0701480 | G7LJI1 | 85.552 | 353 | 16 | 3 | 6 | 332 | 23 | 366 | 0.0 | 572 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0701480 | Msa0701550 | 0.919266 | 5.580157e-87 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0701480 | MtrunA17_Chr3g0086081 | 37.063 | 143 | 83 | 2 | 233 | 371 | 1 | 140 | 4.02e-20 | 90.9 |
Msa0701480 | MtrunA17_Chr8g0345501 | 35.821 | 134 | 82 | 2 | 228 | 360 | 416 | 546 | 9.08e-19 | 88.6 |
Msa0701480 | MtrunA17_Chr4g0010341 | 31.447 | 159 | 96 | 4 | 221 | 372 | 185 | 337 | 4.66e-18 | 85.9 |
Msa0701480 | MtrunA17_Chr4g0039731 | 32.919 | 161 | 105 | 1 | 198 | 358 | 143 | 300 | 8.58e-16 | 79.7 |
Msa0701480 | MtrunA17_Chr2g0322881 | 27.007 | 137 | 93 | 2 | 232 | 365 | 345 | 477 | 3.18e-12 | 68.2 |
Msa0701480 | MtrunA17_Chr7g0231401 | 27.559 | 127 | 85 | 2 | 242 | 365 | 298 | 420 | 6.89e-12 | 67.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 162 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCTTCGCATCCTGCTGCTAA+TGG | 0.197043 | 4_4:-72872684 | Msa0701480:CDS |
CTCATGCTGCACCATCTTTC+AGG | 0.202265 | 4_4:-72873133 | Msa0701480:CDS |
TTCTGCTTTGTGGAAAATTC+TGG | 0.236451 | 4_4:-72871908 | Msa0701480:three_prime_UTR |
GCATCTGACCGTGGAGGTTT+TGG | 0.250512 | 4_4:-72872270 | Msa0701480:CDS |
GAACATGAGCCACGATAATT+TGG | 0.261063 | 4_4:+72871237 | None:intergenic |
TTGCATAATTGATCAAATTC+TGG | 0.279236 | 4_4:-72872026 | Msa0701480:three_prime_UTR |
CTTGTGGTTTGCAGAATTTA+AGG | 0.280595 | 4_4:-72872586 | Msa0701480:intron |
CACCACACATCTAATTCTTT+TGG | 0.292432 | 4_4:+72871336 | None:intergenic |
TGATGGAAAGCTTGAACTTT+CGG | 0.328819 | 4_4:-72871047 | Msa0701480:three_prime_UTR |
CCAAATGCTAAAACAATTGA+TGG | 0.335026 | 4_4:-72871064 | Msa0701480:three_prime_UTR |
CTCATGTTGCACCTCCTCTT+AGG | 0.335701 | 4_4:-72873040 | Msa0701480:CDS |
ATCCCAACATAGAGCTAATA+TGG | 0.337031 | 4_4:-72872214 | Msa0701480:CDS |
CATCTCGCATTGCTCCTTCT+AGG | 0.357283 | 4_4:-72873082 | Msa0701480:CDS |
CTATGTTAAATTCTGCTTTG+TGG | 0.365307 | 4_4:-72871957 | Msa0701480:three_prime_UTR |
ATGGAATCTACTGTATTAGT+AGG | 0.365740 | 4_4:-72871270 | Msa0701480:three_prime_UTR |
TCCATGTTGGTCTATTCATT+TGG | 0.366885 | 4_4:+72872379 | None:intergenic |
CTTCGCATCCTGCTGCTAAT+GGG | 0.370066 | 4_4:-72872683 | Msa0701480:CDS |
TCCTGGGGTGTGTGCTCCTT+CGG | 0.373836 | 4_4:+72872869 | None:intergenic |
GGGAGAGTTTACACAAAGAT+TGG | 0.387032 | 4_4:-72871400 | Msa0701480:three_prime_UTR |
TTATAAATTGCAACCTCAAA+AGG | 0.398580 | 4_4:+72871758 | None:intergenic |
AAGAAACAAATCTGAAGGAT+TGG | 0.402535 | 4_4:+72871591 | None:intergenic |
CCGTTTCGATTGACGACTCT+TGG | 0.402875 | 4_4:+72873481 | None:intergenic |
AGATCAGCTTCGTAAGGAAT+TGG | 0.404614 | 4_4:-72871118 | Msa0701480:three_prime_UTR |
ATATGCAGAATTCTGCTTTG+TGG | 0.413541 | 4_4:-72871918 | Msa0701480:three_prime_UTR |
GCAGATGGCAGGCAAAGATC+AGG | 0.414547 | 4_4:-72873519 | None:intergenic |
TCCCTTGCAAAGACGATGCT+TGG | 0.415362 | 4_4:+72871367 | None:intergenic |
CCAATGCCATGTTTGAAGCT+TGG | 0.416025 | 4_4:-72871712 | Msa0701480:three_prime_UTR |
AAGAAAACTTTATACCTTGA+TGG | 0.422308 | 4_4:-72872801 | Msa0701480:CDS |
AGGTGTTATTCTTACGATTC+CGG | 0.428647 | 4_4:+72871560 | None:intergenic |
GAGTACATTATGTGATCATT+GGG | 0.429070 | 4_4:-72872340 | Msa0701480:CDS |
GATTCTACCCCTCTTGTTGA+GGG | 0.431129 | 4_4:+72872918 | None:intergenic |
TGCAGTATGGAAAATTCTGC+TGG | 0.431863 | 4_4:-72871991 | Msa0701480:three_prime_UTR |
CTTGTTGAGGGTGGTGTGAC+AGG | 0.434029 | 4_4:+72872930 | None:intergenic |
GAGTGTTAAATTCTGCAGTA+TGG | 0.437899 | 4_4:-72872004 | Msa0701480:three_prime_UTR |
TAACCATATTAGCTCTATGT+TGG | 0.441378 | 4_4:+72872211 | None:intergenic |
ATCATCATGAACTCGGTCTC+TGG | 0.451220 | 4_4:+72871011 | None:intergenic |
CGAGATGACTTGGGAGGAAG+TGG | 0.457519 | 4_4:+72873230 | None:intergenic |
ACAATAGTTTCACTAGATCC+TGG | 0.459741 | 4_4:+72872852 | None:intergenic |
TTTCTAGCCCACACATCATC+CGG | 0.462631 | 4_4:+72872459 | None:intergenic |
AAAGGACGAGTGTATGGTCT+TGG | 0.462855 | 4_4:-72871294 | Msa0701480:three_prime_UTR |
GATGTGTGGTGCGAGGTTGC+AGG | 0.466355 | 4_4:-72871324 | Msa0701480:three_prime_UTR |
CCCTTGCAAAGACGATGCTT+GGG | 0.467123 | 4_4:+72871368 | None:intergenic |
GTCACTAAAGTCTCTAAATA+CGG | 0.467331 | 4_4:-72870752 | Msa0701480:three_prime_UTR |
GGAGTACATTATGTGATCAT+TGG | 0.470473 | 4_4:-72872341 | Msa0701480:CDS |
CTGTGCAACACGAGATGACT+TGG | 0.471628 | 4_4:+72873220 | None:intergenic |
TGTTGCTGTGTATAAGTTGA+AGG | 0.474432 | 4_4:-72872127 | Msa0701480:CDS |
TCAACAAAGACACGAATTTG+AGG | 0.475522 | 4_4:-72871157 | Msa0701480:three_prime_UTR |
AGAAACAAATCTGAAGGATT+GGG | 0.475855 | 4_4:+72871592 | None:intergenic |
GCAATGCGAGATGTACTAGA+AGG | 0.476845 | 4_4:+72873092 | None:intergenic |
AACCATATTAGCTCTATGTT+GGG | 0.481532 | 4_4:+72872212 | None:intergenic |
ATAAACAAAGGACGAGTGTA+TGG | 0.489977 | 4_4:-72871300 | Msa0701480:three_prime_UTR |
TTGGTCTATTCATTTGGCTA+CGG | 0.495039 | 4_4:+72872385 | None:intergenic |
TCAAGTTGCGCCTCCTCCTA+AGG | 0.496171 | 4_4:-72873183 | Msa0701480:CDS |
TTCGATTGACGACTCTTGGA+AGG | 0.496936 | 4_4:+72873485 | None:intergenic |
TGAGATGATTGTGAATTAGA+TGG | 0.498745 | 4_4:+72872894 | None:intergenic |
TTACTGAGCCATGGCCCTCA+TGG | 0.500324 | 4_4:-72872635 | Msa0701480:CDS |
GGTGCAACACGAGATGCCTT+AGG | 0.500918 | 4_4:+72873275 | None:intergenic |
GTGACATGAGATGTCCTAGA+AGG | 0.501810 | 4_4:+72873068 | None:intergenic |
CAAGTCATCTCGTGTTGCAC+AGG | 0.502534 | 4_4:-72873219 | Msa0701480:CDS |
TTATATCAAGTGCAGATGGC+AGG | 0.506530 | 4_4:-72873530 | None:intergenic |
ATCTACTGTATTAGTAGGGA+AGG | 0.508889 | 4_4:-72871265 | Msa0701480:three_prime_UTR |
ACATGTATATAAATTATGAA+TGG | 0.509021 | 4_4:-72871849 | Msa0701480:three_prime_UTR |
GGATGTGGTGATTGAGCCAC+AGG | 0.511914 | 4_4:+72872233 | None:intergenic |
CGAATTTGAGGAAATGAGAA+AGG | 0.512393 | 4_4:-72871145 | Msa0701480:three_prime_UTR |
GGAGGGTCCTTTCACACCTG+TGG | 0.514036 | 4_4:-72872249 | Msa0701480:CDS |
CAATAGTTTCACTAGATCCT+GGG | 0.514865 | 4_4:+72872853 | None:intergenic |
AAGTGTATATAAATTATGAA+TGG | 0.516128 | 4_4:-72871791 | Msa0701480:three_prime_UTR |
AATGGAGACTTTGAAACGTA+TGG | 0.519982 | 4_4:-72871831 | Msa0701480:three_prime_UTR |
ATGGGATCGGAGATATCATC+AGG | 0.522527 | 4_4:-72872665 | Msa0701480:CDS |
ATATGAGATGTCACAGGAGG+AGG | 0.525422 | 4_4:+72873308 | None:intergenic |
TGATTCTACCCCTCTTGTTG+AGG | 0.525626 | 4_4:+72872917 | None:intergenic |
TCATATTCCACCTCCACCTA+AGG | 0.531188 | 4_4:-72873291 | Msa0701480:CDS |
GGTGCAACATGAGATGCCTT+AGG | 0.531313 | 4_4:+72873167 | None:intergenic |
CTACTGTATTAGTAGGGAAG+GGG | 0.533265 | 4_4:-72871263 | Msa0701480:three_prime_UTR |
ATATTTACCCTTGTCCATCA+AGG | 0.536192 | 4_4:+72872787 | None:intergenic |
TCTACTGTATTAGTAGGGAA+GGG | 0.536404 | 4_4:-72871264 | Msa0701480:three_prime_UTR |
CGAGATGCCTTAGGTGGAGG+TGG | 0.539124 | 4_4:+72873284 | None:intergenic |
CCAAGCTTCAAACATGGCAT+TGG | 0.539820 | 4_4:+72871712 | None:intergenic |
CATAATGTACTCCACACAGC+TGG | 0.543413 | 4_4:+72872351 | None:intergenic |
ACCCAAGCATCGTCTTTGCA+AGG | 0.543519 | 4_4:-72871369 | Msa0701480:three_prime_UTR |
CATCCTGCTGCTAATGGGAT+CGG | 0.549221 | 4_4:-72872678 | Msa0701480:CDS |
GGTGCATCATGAGACGTCCT+AGG | 0.552126 | 4_4:+72873383 | None:intergenic |
GTAGTATGAGATAATGCAGA+AGG | 0.554286 | 4_4:+72873416 | None:intergenic |
ACATGAGATGCCTTAGGAGG+AGG | 0.558559 | 4_4:+72873173 | None:intergenic |
TCTCCGATCCCATTAGCAGC+AGG | 0.561255 | 4_4:+72872675 | None:intergenic |
CCCAAGCATCGTCTTTGCAA+GGG | 0.567825 | 4_4:-72871368 | Msa0701480:three_prime_UTR |
CCAAGAGTCGTCAATCGAAA+CGG | 0.568416 | 4_4:-72873481 | Msa0701480:CDS |
GGAAAGAGATCAGCTTCGTA+AGG | 0.568859 | 4_4:-72871124 | Msa0701480:three_prime_UTR |
ACACGAGATGCCTTAGGTGG+AGG | 0.571947 | 4_4:+72873281 | None:intergenic |
TTTGTCCACCGGATGATGTG+TGG | 0.575204 | 4_4:-72872467 | Msa0701480:CDS |
GCAGTAGCAGATGTCCTAAG+AGG | 0.578232 | 4_4:+72873026 | None:intergenic |
GATTTATACATAGGCAGTTG+AGG | 0.579629 | 4_4:+72872069 | None:intergenic |
CCATTAGCAGCAGGATGCGA+AGG | 0.581596 | 4_4:+72872684 | None:intergenic |
CAAATCTGAAGGATTGGGAG+GGG | 0.582027 | 4_4:+72871597 | None:intergenic |
TCTACCCCTCTTGTTGAGGG+TGG | 0.584450 | 4_4:+72872921 | None:intergenic |
TCCGAAGGAGCACACACCCC+AGG | 0.586218 | 4_4:-72872870 | Msa0701480:CDS |
TGGAATCTACTGTATTAGTA+GGG | 0.586947 | 4_4:-72871269 | Msa0701480:three_prime_UTR |
CTACTTCCGTCTCAAACAGA+TGG | 0.587027 | 4_4:+72870788 | None:intergenic |
ACGAGTGTATGGTCTTGGAA+TGG | 0.587127 | 4_4:-72871289 | Msa0701480:three_prime_UTR |
GCAGCATGAGATGTACTAGA+AGG | 0.589412 | 4_4:+72873146 | None:intergenic |
GTCACACCACCCTCAACAAG+AGG | 0.592791 | 4_4:-72872927 | Msa0701480:CDS |
CTGCTACTGCCCCATCACAT+AGG | 0.594431 | 4_4:-72873013 | Msa0701480:CDS |
ATTTGTTTCTTTACACACAC+CGG | 0.600778 | 4_4:-72871579 | Msa0701480:three_prime_UTR |
CACCTGGGTTGACAGAAGAT+CGG | 0.601087 | 4_4:-72871542 | Msa0701480:three_prime_UTR |
CTTTATACCTTGATGGACAA+GGG | 0.601122 | 4_4:-72872794 | Msa0701480:intron |
ACTTTATACCTTGATGGACA+AGG | 0.602457 | 4_4:-72872795 | Msa0701480:CDS |
ACATGAGATGTCCTATGTGA+TGG | 0.603132 | 4_4:+72873002 | None:intergenic |
ACTTGAGATGTATTATGAGC+AGG | 0.603902 | 4_4:+72873254 | None:intergenic |
ATGTTCTTCATCAACTGAGT+GGG | 0.606073 | 4_4:-72871220 | Msa0701480:three_prime_UTR |
ATTAGCTCTATGTTGGGATG+TGG | 0.606500 | 4_4:+72872218 | None:intergenic |
GCATGAAATGTCCTGAAAGA+TGG | 0.607109 | 4_4:+72873122 | None:intergenic |
CAGATGGCAGGCAAAGATCA+GGG | 0.607266 | 4_4:-72873518 | Msa0701480:CDS |
GATTGAGCCACAGGTGTGAA+AGG | 0.607696 | 4_4:+72872242 | None:intergenic |
TTGTCCACCGGATGATGTGT+GGG | 0.608023 | 4_4:-72872466 | Msa0701480:CDS |
GTGTAAAGAAACAAATCTGA+AGG | 0.608038 | 4_4:+72871586 | None:intergenic |
GGTGTGACAGGAGATGTCCT+AGG | 0.608106 | 4_4:+72872942 | None:intergenic |
TCTGAGACACAAAGCAATGG+TGG | 0.611483 | 4_4:-72872825 | Msa0701480:CDS |
CTGTATTAGTAGGGAAGGGG+AGG | 0.612447 | 4_4:-72871260 | Msa0701480:three_prime_UTR |
GCAACATGAGATGCCTTAGG+AGG | 0.612857 | 4_4:+72873170 | None:intergenic |
ACAAATCTGAAGGATTGGGA+GGG | 0.614001 | 4_4:+72871596 | None:intergenic |
AAAACTCCATCTGTTTGAGA+CGG | 0.614276 | 4_4:-72870794 | Msa0701480:three_prime_UTR |
TTCCGATCTTCTGTCAACCC+AGG | 0.618483 | 4_4:+72871540 | None:intergenic |
CATGAGATGTCCTATGTGAT+GGG | 0.620367 | 4_4:+72873003 | None:intergenic |
AACAAATCTGAAGGATTGGG+AGG | 0.622616 | 4_4:+72871595 | None:intergenic |
GCAACACGAGATGCCTTAGG+TGG | 0.623348 | 4_4:+72873278 | None:intergenic |
TCACAATCATCTCATTCCGA+AGG | 0.624651 | 4_4:-72872885 | Msa0701480:CDS |
GGTGGAATATGAGATGTCAC+AGG | 0.624679 | 4_4:+72873302 | None:intergenic |
ACATGAGATGTCCTACGTGC+TGG | 0.625514 | 4_4:+72872975 | None:intergenic |
GTGCAACCAAGCTTCAAACA+TGG | 0.626097 | 4_4:+72871706 | None:intergenic |
CTCATGTCACACGTCTACCT+AGG | 0.626514 | 4_4:-72872959 | Msa0701480:CDS |
GCAGTATGGAAAATTCTGCT+GGG | 0.629178 | 4_4:-72871990 | Msa0701480:three_prime_UTR |
TCACACCACCCTCAACAAGA+GGG | 0.629366 | 4_4:-72872926 | Msa0701480:CDS |
CATGGATTCGTCCAGCTGTG+TGG | 0.634443 | 4_4:-72872362 | Msa0701480:CDS |
TGTGCAACACGAGATGACTT+GGG | 0.642431 | 4_4:+72873221 | None:intergenic |
GTAGCAGATGTCCTAAGAGG+AGG | 0.643950 | 4_4:+72873029 | None:intergenic |
ACGTTGATACAAGAGACTTG+TGG | 0.651956 | 4_4:-72872602 | Msa0701480:CDS |
CACCAAAAGAATTAGATGTG+TGG | 0.655144 | 4_4:-72871338 | Msa0701480:three_prime_UTR |
AATAGTTTCACTAGATCCTG+GGG | 0.656608 | 4_4:+72872854 | None:intergenic |
AAGGGGAGGCCAAATTATCG+TGG | 0.657227 | 4_4:-72871246 | Msa0701480:three_prime_UTR |
AGGACCCTCCAAAACCTCCA+CGG | 0.657319 | 4_4:+72872262 | None:intergenic |
CATGTTCTTCATCAACTGAG+TGG | 0.657499 | 4_4:-72871221 | Msa0701480:three_prime_UTR |
ATGCGAGATGTACTAGAAGG+AGG | 0.660631 | 4_4:+72873095 | None:intergenic |
ACAGCTGGACGAATCCATGT+TGG | 0.660640 | 4_4:+72872366 | None:intergenic |
GCCAAATGAATAGACCAACA+TGG | 0.672939 | 4_4:-72872380 | Msa0701480:CDS |
GCAACACGAGATGACTTGGG+AGG | 0.677600 | 4_4:+72873224 | None:intergenic |
AGAAAGAACTTTGAAAGACG+AGG | 0.683206 | 4_4:-72872441 | Msa0701480:CDS |
CACACCACCCTCAACAAGAG+GGG | 0.685669 | 4_4:-72872925 | Msa0701480:CDS |
GGAATATGAGATGTCACAGG+AGG | 0.689307 | 4_4:+72873305 | None:intergenic |
ATACTACTACTCTATCACCT+AGG | 0.691047 | 4_4:-72873400 | Msa0701480:CDS |
GGAATCGTAAGAATAACACC+TGG | 0.693829 | 4_4:-72871558 | Msa0701480:three_prime_UTR |
GTTGGTGATGATGATGACAC+TGG | 0.695145 | 4_4:-72870979 | Msa0701480:three_prime_UTR |
CTAGCCCACACATCATCCGG+TGG | 0.709841 | 4_4:+72872462 | None:intergenic |
GCATCTGAGACACAAAGCAA+TGG | 0.709908 | 4_4:-72872828 | Msa0701480:CDS |
AGAATTAGATGTGTGGTGCG+AGG | 0.715434 | 4_4:-72871331 | Msa0701480:three_prime_UTR |
AATCGAGCATCTGACCGTGG+AGG | 0.720404 | 4_4:-72872276 | Msa0701480:CDS |
AGTACATTATGTGATCATTG+GGG | 0.720960 | 4_4:-72872339 | Msa0701480:CDS |
ATGAGATGTCCTATGTGATG+GGG | 0.725591 | 4_4:+72873004 | None:intergenic |
GAGGTTGCAGGAATAAACAA+AGG | 0.727291 | 4_4:-72871312 | Msa0701480:three_prime_UTR |
GAATCGTAAGAATAACACCT+GGG | 0.729453 | 4_4:-72871557 | Msa0701480:three_prime_UTR |
TGGTGGTGAGTATTATGACG+AGG | 0.745301 | 4_4:-72870959 | Msa0701480:three_prime_UTR |
CTCATGTTATACCAGCACGT+AGG | 0.788728 | 4_4:-72872986 | Msa0701480:CDS |
GGTGATGATGATGACACTGG+TGG | 0.793488 | 4_4:-72870976 | Msa0701480:three_prime_UTR |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTCTTATTTTTTTTTTAGA+CGG | - | chr4_4:72872547-72872566 | Msa0701480:intron | 10.0% |
!! | GTTAATATAAAGAAAAAGAA+AGG | + | chr4_4:72871999-72872018 | None:intergenic | 15.0% |
!! | AAAAAATAGGATTTATACAT+AGG | + | chr4_4:72872122-72872141 | None:intergenic | 15.0% |
!! | AAAATGTCTACAAAAAAAAT+AGG | + | chr4_4:72872135-72872154 | None:intergenic | 15.0% |
!! | ACATGTATATAAATTATGAA+TGG | - | chr4_4:72872330-72872349 | Msa0701480:CDS | 15.0% |
!! | AAGTGTATATAAATTATGAA+TGG | - | chr4_4:72872388-72872407 | Msa0701480:CDS | 15.0% |
!! | ATATGAATTAAAAACATGTT+AGG | + | chr4_4:72872529-72872548 | None:intergenic | 15.0% |
!! | GGTATGTTTCATATATAATT+AGG | - | chr4_4:72871614-72871633 | Msa0701480:three_prime_UTR | 20.0% |
!! | ATTGAAAAACAATCTAAACA+AGG | - | chr4_4:72871770-72871789 | Msa0701480:three_prime_UTR | 20.0% |
!! | TGTGTTTCAAAATATCAATT+AGG | - | chr4_4:72872738-72872757 | Msa0701480:intron | 20.0% |
! | AAGAAAACTTTATACCTTGA+TGG | - | chr4_4:72871378-72871397 | Msa0701480:three_prime_UTR | 25.0% |
! | CAAAAATCTACAAACAATAC+AGG | + | chr4_4:72871475-72871494 | None:intergenic | 25.0% |
! | TTGCATAATTGATCAAATTC+TGG | - | chr4_4:72872153-72872172 | Msa0701480:CDS | 25.0% |
! | TTATAAATTGCAACCTCAAA+AGG | + | chr4_4:72872424-72872443 | None:intergenic | 25.0% |
!!! | TTTTTTTAGACGGAATTGAA+TGG | - | chr4_4:72872557-72872576 | Msa0701480:intron | 25.0% |
!! | AAAGTATGTTGCATTTTGTT+AGG | - | chr4_4:72873269-72873288 | Msa0701480:CDS | 25.0% |
!!! | GGAGTTTTTTTTTAAACTAG+TGG | + | chr4_4:72873373-72873392 | None:intergenic | 25.0% |
! | CATAACAACTACTAGAAAAA+AGG | + | chr4_4:72873466-72873485 | None:intergenic | 25.0% |
TGAGATGATTGTGAATTAGA+TGG | + | chr4_4:72871288-72871307 | None:intergenic | 30.0% | |
! | ACAATTTTCATTTTGTCCAC+CGG | - | chr4_4:72871701-72871720 | Msa0701480:three_prime_UTR | 30.0% |
GAGTACATTATGTGATCATT+GGG | - | chr4_4:72871839-72871858 | Msa0701480:three_prime_UTR | 30.0% | |
AGTACATTATGTGATCATTG+GGG | - | chr4_4:72871840-72871859 | Msa0701480:three_prime_UTR | 30.0% | |
!! | AACCATATTAGCTCTATGTT+GGG | + | chr4_4:72871970-72871989 | None:intergenic | 30.0% |
!! | TAACCATATTAGCTCTATGT+TGG | + | chr4_4:72871971-72871990 | None:intergenic | 30.0% |
CTATGTTAAATTCTGCTTTG+TGG | - | chr4_4:72872222-72872241 | Msa0701480:CDS | 30.0% | |
AGAAACAAATCTGAAGGATT+GGG | + | chr4_4:72872590-72872609 | None:intergenic | 30.0% | |
AAGAAACAAATCTGAAGGAT+TGG | + | chr4_4:72872591-72872610 | None:intergenic | 30.0% | |
GTGTAAAGAAACAAATCTGA+AGG | + | chr4_4:72872596-72872615 | None:intergenic | 30.0% | |
! | ATTTGTTTCTTTACACACAC+CGG | - | chr4_4:72872600-72872619 | Msa0701480:CDS | 30.0% |
AGGCTTATATTTGTGTTAAC+AGG | - | chr4_4:72872758-72872777 | Msa0701480:intron | 30.0% | |
GGCTTATATTTGTGTTAACA+GGG | - | chr4_4:72872759-72872778 | Msa0701480:intron | 30.0% | |
! | ACACATCTAATTCTTTTGGT+GGG | + | chr4_4:72872842-72872861 | None:intergenic | 30.0% |
ATGGAATCTACTGTATTAGT+AGG | - | chr4_4:72872909-72872928 | Msa0701480:CDS | 30.0% | |
TGGAATCTACTGTATTAGTA+GGG | - | chr4_4:72872910-72872929 | Msa0701480:CDS | 30.0% | |
!!! | CCATCAATTGTTTTAGCATT+TGG | + | chr4_4:72873118-72873137 | None:intergenic | 30.0% |
CCAAATGCTAAAACAATTGA+TGG | - | chr4_4:72873115-72873134 | Msa0701480:CDS | 30.0% | |
GTCACTAAAGTCTCTAAATA+CGG | - | chr4_4:72873427-72873446 | Msa0701480:CDS | 30.0% | |
!!! | GCAGAAGGTTTTAAAGAAGA+CGG | + | chr4_4:72870751-72870770 | None:intergenic | 35.0% |
GTAGTATGAGATAATGCAGA+AGG | + | chr4_4:72870766-72870785 | None:intergenic | 35.0% | |
ATACTACTACTCTATCACCT+AGG | - | chr4_4:72870779-72870798 | Msa0701480:three_prime_UTR | 35.0% | |
ACTTGAGATGTATTATGAGC+AGG | + | chr4_4:72870928-72870947 | None:intergenic | 35.0% | |
AATAGTTTCACTAGATCCTG+GGG | + | chr4_4:72871328-72871347 | None:intergenic | 35.0% | |
CAATAGTTTCACTAGATCCT+GGG | + | chr4_4:72871329-72871348 | None:intergenic | 35.0% | |
ACAATAGTTTCACTAGATCC+TGG | + | chr4_4:72871330-72871349 | None:intergenic | 35.0% | |
! | ACTTTATACCTTGATGGACA+AGG | - | chr4_4:72871384-72871403 | Msa0701480:three_prime_UTR | 35.0% |
! | CTTTATACCTTGATGGACAA+GGG | - | chr4_4:72871385-72871404 | Msa0701480:three_prime_UTR | 35.0% |
ATATTTACCCTTGTCCATCA+AGG | + | chr4_4:72871395-72871414 | None:intergenic | 35.0% | |
! | ACGTGTATCTTTTTCCATGA+GGG | + | chr4_4:72871561-72871580 | None:intergenic | 35.0% |
! | AACGTGTATCTTTTTCCATG+AGG | + | chr4_4:72871562-72871581 | None:intergenic | 35.0% |
! | CTTGTGGTTTGCAGAATTTA+AGG | - | chr4_4:72871593-72871612 | Msa0701480:three_prime_UTR | 35.0% |
! | AGAAAGAACTTTGAAAGACG+AGG | - | chr4_4:72871738-72871757 | Msa0701480:three_prime_UTR | 35.0% |
TTGGTCTATTCATTTGGCTA+CGG | + | chr4_4:72871797-72871816 | None:intergenic | 35.0% | |
! | TCCATGTTGGTCTATTCATT+TGG | + | chr4_4:72871803-72871822 | None:intergenic | 35.0% |
GGAGTACATTATGTGATCAT+TGG | - | chr4_4:72871838-72871857 | Msa0701480:three_prime_UTR | 35.0% | |
ATCCCAACATAGAGCTAATA+TGG | - | chr4_4:72871965-72871984 | Msa0701480:three_prime_UTR | 35.0% | |
! | TGTTGCTGTGTATAAGTTGA+AGG | - | chr4_4:72872052-72872071 | Msa0701480:three_prime_UTR | 35.0% |
GATTTATACATAGGCAGTTG+AGG | + | chr4_4:72872113-72872132 | None:intergenic | 35.0% | |
GAGTGTTAAATTCTGCAGTA+TGG | - | chr4_4:72872175-72872194 | Msa0701480:CDS | 35.0% | |
ATATGCAGAATTCTGCTTTG+TGG | - | chr4_4:72872261-72872280 | Msa0701480:CDS | 35.0% | |
TTCTGCTTTGTGGAAAATTC+TGG | - | chr4_4:72872271-72872290 | Msa0701480:CDS | 35.0% | |
!! | AATGGAGACTTTGAAACGTA+TGG | - | chr4_4:72872348-72872367 | Msa0701480:CDS | 35.0% |
!! | AGGTGTTATTCTTACGATTC+CGG | + | chr4_4:72872622-72872641 | None:intergenic | 35.0% |
GAATCGTAAGAATAACACCT+GGG | - | chr4_4:72872622-72872641 | Msa0701480:CDS | 35.0% | |
! | ACATCTAATTCTTTTGGTGG+GGG | + | chr4_4:72872840-72872859 | None:intergenic | 35.0% |
! | CACATCTAATTCTTTTGGTG+GGG | + | chr4_4:72872841-72872860 | None:intergenic | 35.0% |
! | CACACATCTAATTCTTTTGG+TGG | + | chr4_4:72872843-72872862 | None:intergenic | 35.0% |
CACCAAAAGAATTAGATGTG+TGG | - | chr4_4:72872841-72872860 | Msa0701480:CDS | 35.0% | |
! | CACCACACATCTAATTCTTT+TGG | + | chr4_4:72872846-72872865 | None:intergenic | 35.0% |
ATAAACAAAGGACGAGTGTA+TGG | - | chr4_4:72872879-72872898 | Msa0701480:CDS | 35.0% | |
ATCTACTGTATTAGTAGGGA+AGG | - | chr4_4:72872914-72872933 | Msa0701480:CDS | 35.0% | |
TCTACTGTATTAGTAGGGAA+GGG | - | chr4_4:72872915-72872934 | Msa0701480:CDS | 35.0% | |
ATGTTCTTCATCAACTGAGT+GGG | - | chr4_4:72872959-72872978 | Msa0701480:CDS | 35.0% | |
TCAACAAAGACACGAATTTG+AGG | - | chr4_4:72873022-72873041 | Msa0701480:CDS | 35.0% | |
CGAATTTGAGGAAATGAGAA+AGG | - | chr4_4:72873034-72873053 | Msa0701480:CDS | 35.0% | |
TGATGGAAAGCTTGAACTTT+CGG | - | chr4_4:72873132-72873151 | Msa0701480:CDS | 35.0% | |
CATCATCATCATCATGAACT+CGG | + | chr4_4:72873178-72873197 | None:intergenic | 35.0% | |
! | AGTTCATGATGATGATGATG+AGG | - | chr4_4:72873178-72873197 | Msa0701480:CDS | 35.0% |
AAAACTCCATCTGTTTGAGA+CGG | - | chr4_4:72873385-72873404 | Msa0701480:intron | 35.0% | |
GCATGAAATGTCCTGAAAGA+TGG | + | chr4_4:72871060-72871079 | None:intergenic | 40.0% | |
ATGAGATGTCCTATGTGATG+GGG | + | chr4_4:72871178-72871197 | None:intergenic | 40.0% | |
CATGAGATGTCCTATGTGAT+GGG | + | chr4_4:72871179-72871198 | None:intergenic | 40.0% | |
ACATGAGATGTCCTATGTGA+TGG | + | chr4_4:72871180-72871199 | None:intergenic | 40.0% | |
TCACAATCATCTCATTCCGA+AGG | - | chr4_4:72871294-72871313 | Msa0701480:three_prime_UTR | 40.0% | |
! | GGACTAATTTTACTGAGCCA+TGG | - | chr4_4:72871535-72871554 | Msa0701480:three_prime_UTR | 40.0% |
ACGTTGATACAAGAGACTTG+TGG | - | chr4_4:72871577-72871596 | Msa0701480:three_prime_UTR | 40.0% | |
GCCAAATGAATAGACCAACA+TGG | - | chr4_4:72871799-72871818 | Msa0701480:three_prime_UTR | 40.0% | |
!! | ATTAGCTCTATGTTGGGATG+TGG | + | chr4_4:72871964-72871983 | None:intergenic | 40.0% |
TGCAGTATGGAAAATTCTGC+TGG | - | chr4_4:72872188-72872207 | Msa0701480:CDS | 40.0% | |
GCAGTATGGAAAATTCTGCT+GGG | - | chr4_4:72872189-72872208 | Msa0701480:CDS | 40.0% | |
!! | TGGAGTGTTTGAACCTTTTG+AGG | - | chr4_4:72872408-72872427 | Msa0701480:CDS | 40.0% |
ACAAATCTGAAGGATTGGGA+GGG | + | chr4_4:72872586-72872605 | None:intergenic | 40.0% | |
AACAAATCTGAAGGATTGGG+AGG | + | chr4_4:72872587-72872606 | None:intergenic | 40.0% | |
GGAATCGTAAGAATAACACC+TGG | - | chr4_4:72872621-72872640 | Msa0701480:CDS | 40.0% | |
GGGAGAGTTTACACAAAGAT+TGG | - | chr4_4:72872779-72872798 | Msa0701480:intron | 40.0% | |
GAGGTTGCAGGAATAAACAA+AGG | - | chr4_4:72872867-72872886 | Msa0701480:CDS | 40.0% | |
CTACTGTATTAGTAGGGAAG+GGG | - | chr4_4:72872916-72872935 | Msa0701480:CDS | 40.0% | |
GAACATGAGCCACGATAATT+TGG | + | chr4_4:72872945-72872964 | None:intergenic | 40.0% | |
CATGTTCTTCATCAACTGAG+TGG | - | chr4_4:72872958-72872977 | Msa0701480:CDS | 40.0% | |
AGATCAGCTTCGTAAGGAAT+TGG | - | chr4_4:72873061-72873080 | Msa0701480:CDS | 40.0% | |
! | CATGATGATGATGATGAGGT+TGG | - | chr4_4:72873182-72873201 | Msa0701480:CDS | 40.0% |
TTCGATTGACGACTCTTGGA+AGG | + | chr4_4:72870697-72870716 | None:intergenic | 45.0% | |
CCAAGAGTCGTCAATCGAAA+CGG | - | chr4_4:72870698-72870717 | Msa0701480:three_prime_UTR | 45.0% | |
ACAAGAGATATCCCAAGACG+AGG | + | chr4_4:72870820-72870839 | None:intergenic | 45.0% | |
ATATGAGATGTCACAGGAGG+AGG | + | chr4_4:72870874-72870893 | None:intergenic | 45.0% | |
GGAATATGAGATGTCACAGG+AGG | + | chr4_4:72870877-72870896 | None:intergenic | 45.0% | |
GGTGGAATATGAGATGTCAC+AGG | + | chr4_4:72870880-72870899 | None:intergenic | 45.0% | |
TCATATTCCACCTCCACCTA+AGG | - | chr4_4:72870888-72870907 | Msa0701480:three_prime_UTR | 45.0% | |
TGTGCAACACGAGATGACTT+GGG | + | chr4_4:72870961-72870980 | None:intergenic | 45.0% | |
GCAGCATGAGATGTACTAGA+AGG | + | chr4_4:72871036-72871055 | None:intergenic | 45.0% | |
ATGCGAGATGTACTAGAAGG+AGG | + | chr4_4:72871087-72871106 | None:intergenic | 45.0% | |
GCAATGCGAGATGTACTAGA+AGG | + | chr4_4:72871090-72871109 | None:intergenic | 45.0% | |
GTGACATGAGATGTCCTAGA+AGG | + | chr4_4:72871114-72871133 | None:intergenic | 45.0% | |
CTCATGTTATACCAGCACGT+AGG | - | chr4_4:72871193-72871212 | Msa0701480:three_prime_UTR | 45.0% | |
GATTCTACCCCTCTTGTTGA+GGG | + | chr4_4:72871264-72871283 | None:intergenic | 45.0% | |
TGATTCTACCCCTCTTGTTG+AGG | + | chr4_4:72871265-72871284 | None:intergenic | 45.0% | |
! | GCATCTGAGACACAAAGCAA+TGG | - | chr4_4:72871351-72871370 | Msa0701480:three_prime_UTR | 45.0% |
! | TCTGAGACACAAAGCAATGG+TGG | - | chr4_4:72871354-72871373 | Msa0701480:three_prime_UTR | 45.0% |
ATGGGATCGGAGATATCATC+AGG | - | chr4_4:72871514-72871533 | Msa0701480:intron | 45.0% | |
! | ATCTTTTTCCATGAGGGCCA+TGG | + | chr4_4:72871555-72871574 | None:intergenic | 45.0% |
! | TTTCTAGCCCACACATCATC+CGG | + | chr4_4:72871723-72871742 | None:intergenic | 45.0% |
CATAATGTACTCCACACAGC+TGG | + | chr4_4:72871831-72871850 | None:intergenic | 45.0% | |
AAAAATCGAGCATCTGACCG+TGG | - | chr4_4:72871900-72871919 | Msa0701480:three_prime_UTR | 45.0% | |
CCAAGCTTCAAACATGGCAT+TGG | + | chr4_4:72872470-72872489 | None:intergenic | 45.0% | |
! | CCAATGCCATGTTTGAAGCT+TGG | - | chr4_4:72872467-72872486 | Msa0701480:CDS | 45.0% |
GTGCAACCAAGCTTCAAACA+TGG | + | chr4_4:72872476-72872495 | None:intergenic | 45.0% | |
CAAATCTGAAGGATTGGGAG+GGG | + | chr4_4:72872585-72872604 | None:intergenic | 45.0% | |
AGAATTAGATGTGTGGTGCG+AGG | - | chr4_4:72872848-72872867 | Msa0701480:CDS | 45.0% | |
AAAGGACGAGTGTATGGTCT+TGG | - | chr4_4:72872885-72872904 | Msa0701480:CDS | 45.0% | |
! | ACGAGTGTATGGTCTTGGAA+TGG | - | chr4_4:72872890-72872909 | Msa0701480:CDS | 45.0% |
GGAAAGAGATCAGCTTCGTA+AGG | - | chr4_4:72873055-72873074 | Msa0701480:CDS | 45.0% | |
ATCATCATGAACTCGGTCTC+TGG | + | chr4_4:72873171-72873190 | None:intergenic | 45.0% | |
!! | GTTGGTGATGATGATGACAC+TGG | - | chr4_4:72873200-72873219 | Msa0701480:CDS | 45.0% |
! | TGGTGGTGAGTATTATGACG+AGG | - | chr4_4:72873220-72873239 | Msa0701480:CDS | 45.0% |
CTACTTCCGTCTCAAACAGA+TGG | + | chr4_4:72873394-72873413 | None:intergenic | 45.0% | |
CCGTTTCGATTGACGACTCT+TGG | + | chr4_4:72870701-72870720 | None:intergenic | 50.0% | |
TCTCATGATGCACCTCGTCT+TGG | - | chr4_4:72870805-72870824 | Msa0701480:three_prime_UTR | 50.0% | |
CTCATGATGCACCTCGTCTT+GGG | - | chr4_4:72870806-72870825 | Msa0701480:three_prime_UTR | 50.0% | |
CAGCACGAGATGACCTAAGA+CGG | + | chr4_4:72870849-72870868 | None:intergenic | 50.0% | |
CTGTGCAACACGAGATGACT+TGG | + | chr4_4:72870962-72870981 | None:intergenic | 50.0% | |
CAAGTCATCTCGTGTTGCAC+AGG | - | chr4_4:72870960-72870979 | Msa0701480:three_prime_UTR | 50.0% | |
ACATGAGATGCCTTAGGAGG+AGG | + | chr4_4:72871009-72871028 | None:intergenic | 50.0% | |
GCAACATGAGATGCCTTAGG+AGG | + | chr4_4:72871012-72871031 | None:intergenic | 50.0% | |
GGTGCAACATGAGATGCCTT+AGG | + | chr4_4:72871015-72871034 | None:intergenic | 50.0% | |
CTCATGCTGCACCATCTTTC+AGG | - | chr4_4:72871046-72871065 | Msa0701480:three_prime_UTR | 50.0% | |
CATCTCGCATTGCTCCTTCT+AGG | - | chr4_4:72871097-72871116 | Msa0701480:three_prime_UTR | 50.0% | |
CTCATGTTGCACCTCCTCTT+AGG | - | chr4_4:72871139-72871158 | Msa0701480:three_prime_UTR | 50.0% | |
GTAGCAGATGTCCTAAGAGG+AGG | + | chr4_4:72871153-72871172 | None:intergenic | 50.0% | |
GCAGTAGCAGATGTCCTAAG+AGG | + | chr4_4:72871156-72871175 | None:intergenic | 50.0% | |
ACATGAGATGTCCTACGTGC+TGG | + | chr4_4:72871207-72871226 | None:intergenic | 50.0% | |
CTCATGTCACACGTCTACCT+AGG | - | chr4_4:72871220-72871239 | Msa0701480:three_prime_UTR | 50.0% | |
TCACACCACCCTCAACAAGA+GGG | - | chr4_4:72871253-72871272 | Msa0701480:three_prime_UTR | 50.0% | |
CTTCGCATCCTGCTGCTAAT+GGG | - | chr4_4:72871496-72871515 | Msa0701480:intron | 50.0% | |
CATCCTGCTGCTAATGGGAT+CGG | - | chr4_4:72871501-72871520 | Msa0701480:intron | 50.0% | |
TTTGTCCACCGGATGATGTG+TGG | - | chr4_4:72871712-72871731 | Msa0701480:three_prime_UTR | 50.0% | |
TTGTCCACCGGATGATGTGT+GGG | - | chr4_4:72871713-72871732 | Msa0701480:three_prime_UTR | 50.0% | |
ACAGCTGGACGAATCCATGT+TGG | + | chr4_4:72871816-72871835 | None:intergenic | 50.0% | |
GATTGAGCCACAGGTGTGAA+AGG | + | chr4_4:72871940-72871959 | None:intergenic | 50.0% | |
! | CACCTGGGTTGACAGAAGAT+CGG | - | chr4_4:72872637-72872656 | Msa0701480:CDS | 50.0% |
TTCCGATCTTCTGTCAACCC+AGG | + | chr4_4:72872642-72872661 | None:intergenic | 50.0% | |
! | ACCCAAGCATCGTCTTTGCA+AGG | - | chr4_4:72872810-72872829 | Msa0701480:CDS | 50.0% |
CCCTTGCAAAGACGATGCTT+GGG | + | chr4_4:72872814-72872833 | None:intergenic | 50.0% | |
! | CCCAAGCATCGTCTTTGCAA+GGG | - | chr4_4:72872811-72872830 | Msa0701480:CDS | 50.0% |
TCCCTTGCAAAGACGATGCT+TGG | + | chr4_4:72872815-72872834 | None:intergenic | 50.0% | |
CTGTATTAGTAGGGAAGGGG+AGG | - | chr4_4:72872919-72872938 | Msa0701480:CDS | 50.0% | |
AAGGGGAGGCCAAATTATCG+TGG | - | chr4_4:72872933-72872952 | Msa0701480:CDS | 50.0% | |
! | GGTGATGATGATGACACTGG+TGG | - | chr4_4:72873203-72873222 | Msa0701480:CDS | 50.0% |
GGTGCATCATGAGACGTCCT+AGG | + | chr4_4:72870799-72870818 | None:intergenic | 55.0% | |
CTCTTGTTGCACGCCGTCTT+AGG | - | chr4_4:72870833-72870852 | Msa0701480:three_prime_UTR | 55.0% | |
ACACGAGATGCCTTAGGTGG+AGG | + | chr4_4:72870901-72870920 | None:intergenic | 55.0% | |
GCAACACGAGATGCCTTAGG+TGG | + | chr4_4:72870904-72870923 | None:intergenic | 55.0% | |
GGTGCAACACGAGATGCCTT+AGG | + | chr4_4:72870907-72870926 | None:intergenic | 55.0% | |
! | CGAGATGACTTGGGAGGAAG+TGG | + | chr4_4:72870952-72870971 | None:intergenic | 55.0% |
! | GCAACACGAGATGACTTGGG+AGG | + | chr4_4:72870958-72870977 | None:intergenic | 55.0% |
! | TCAAGTTGCGCCTCCTCCTA+AGG | - | chr4_4:72870996-72871015 | Msa0701480:three_prime_UTR | 55.0% |
CTGCTACTGCCCCATCACAT+AGG | - | chr4_4:72871166-72871185 | Msa0701480:three_prime_UTR | 55.0% | |
GGTGTGACAGGAGATGTCCT+AGG | + | chr4_4:72871240-72871259 | None:intergenic | 55.0% | |
CTTGTTGAGGGTGGTGTGAC+AGG | + | chr4_4:72871252-72871271 | None:intergenic | 55.0% | |
GTCACACCACCCTCAACAAG+AGG | - | chr4_4:72871252-72871271 | Msa0701480:three_prime_UTR | 55.0% | |
CACACCACCCTCAACAAGAG+GGG | - | chr4_4:72871254-72871273 | Msa0701480:three_prime_UTR | 55.0% | |
TCTACCCCTCTTGTTGAGGG+TGG | + | chr4_4:72871261-72871280 | None:intergenic | 55.0% | |
CCATTAGCAGCAGGATGCGA+AGG | + | chr4_4:72871498-72871517 | None:intergenic | 55.0% | |
CCTTCGCATCCTGCTGCTAA+TGG | - | chr4_4:72871495-72871514 | Msa0701480:intron | 55.0% | |
TCTCCGATCCCATTAGCAGC+AGG | + | chr4_4:72871507-72871526 | None:intergenic | 55.0% | |
TTACTGAGCCATGGCCCTCA+TGG | - | chr4_4:72871544-72871563 | Msa0701480:three_prime_UTR | 55.0% | |
CATGGATTCGTCCAGCTGTG+TGG | - | chr4_4:72871817-72871836 | Msa0701480:three_prime_UTR | 55.0% | |
AATCGAGCATCTGACCGTGG+AGG | - | chr4_4:72871903-72871922 | Msa0701480:three_prime_UTR | 55.0% | |
! | GCATCTGACCGTGGAGGTTT+TGG | - | chr4_4:72871909-72871928 | Msa0701480:three_prime_UTR | 55.0% |
!! | TCTGACCGTGGAGGTTTTGG+AGG | - | chr4_4:72871912-72871931 | Msa0701480:three_prime_UTR | 55.0% |
!!! | CTGACCGTGGAGGTTTTGGA+GGG | - | chr4_4:72871913-72871932 | Msa0701480:three_prime_UTR | 55.0% |
AGGACCCTCCAAAACCTCCA+CGG | + | chr4_4:72871920-72871939 | None:intergenic | 55.0% | |
GGATGTGGTGATTGAGCCAC+AGG | + | chr4_4:72871949-72871968 | None:intergenic | 55.0% | |
CGAGATGCCTTAGGTGGAGG+TGG | + | chr4_4:72870898-72870917 | None:intergenic | 60.0% | |
TCCTGGGGTGTGTGCTCCTT+CGG | + | chr4_4:72871313-72871332 | None:intergenic | 60.0% | |
CTAGCCCACACATCATCCGG+TGG | + | chr4_4:72871720-72871739 | None:intergenic | 60.0% | |
GGAGGGTCCTTTCACACCTG+TGG | - | chr4_4:72871930-72871949 | Msa0701480:three_prime_UTR | 60.0% | |
GATGTGTGGTGCGAGGTTGC+AGG | - | chr4_4:72872855-72872874 | Msa0701480:CDS | 60.0% | |
! | TCCGAAGGAGCACACACCCC+AGG | - | chr4_4:72871309-72871328 | Msa0701480:three_prime_UTR | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_4 | gene | 72870664 | 72873537 | 72870664 | ID=Msa0701480;Name=Msa0701480 |
chr4_4 | mRNA | 72870664 | 72873537 | 72870664 | ID=Msa0701480-mRNA-1;Parent=Msa0701480;Name=Msa0701480-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0.75|0.6|1|0.75|0.4|5|1328|406 |
chr4_4 | exon | 72870664 | 72871421 | 72870664 | ID=Msa0701480-mRNA-1:exon:22296;Parent=Msa0701480-mRNA-1 |
chr4_4 | exon | 72871531 | 72872502 | 72871531 | ID=Msa0701480-mRNA-1:exon:22295;Parent=Msa0701480-mRNA-1 |
chr4_4 | exon | 72872587 | 72872713 | 72872587 | ID=Msa0701480-mRNA-1:exon:22294;Parent=Msa0701480-mRNA-1 |
chr4_4 | exon | 72872795 | 72873346 | 72872795 | ID=Msa0701480-mRNA-1:exon:22293;Parent=Msa0701480-mRNA-1 |
chr4_4 | exon | 72873398 | 72873537 | 72873398 | ID=Msa0701480-mRNA-1:exon:22292;Parent=Msa0701480-mRNA-1 |
chr4_4 | CDS | 72873398 | 72873537 | 72873398 | ID=Msa0701480-mRNA-1:cds;Parent=Msa0701480-mRNA-1 |
chr4_4 | CDS | 72872795 | 72873346 | 72872795 | ID=Msa0701480-mRNA-1:cds;Parent=Msa0701480-mRNA-1 |
chr4_4 | CDS | 72872587 | 72872713 | 72872587 | ID=Msa0701480-mRNA-1:cds;Parent=Msa0701480-mRNA-1 |
chr4_4 | CDS | 72872101 | 72872502 | 72872101 | ID=Msa0701480-mRNA-1:cds;Parent=Msa0701480-mRNA-1 |
chr4_4 | three_prime_UTR | 72871531 | 72872100 | 72871531 | ID=Msa0701480-mRNA-1:three_prime_utr;Parent=Msa0701480-mRNA-1 |
chr4_4 | three_prime_UTR | 72870664 | 72871421 | 72870664 | ID=Msa0701480-mRNA-1:three_prime_utr;Parent=Msa0701480-mRNA-1 |
Gene Sequence |
Protein sequence |