Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0701550 | XP_040868042.1 | 54.667 | 150 | 61 | 2 | 1 | 150 | 1 | 143 | 7.50e-45 | 160 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0701550 | G7LJI1 | 93.651 | 63 | 4 | 0 | 49 | 111 | 304 | 366 | 2.78e-36 | 140 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0078480 | Msa0701550 | 0.800625 | 1.320073e-48 | -8.615850e-47 |
| Msa0701480 | Msa0701550 | 0.919266 | 5.580157e-87 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0701550 | MtrunA17_Chr8g0379471 | 88.462 | 52 | 6 | 0 | 1 | 52 | 1 | 52 | 2.68e-26 | 95.9 |
| Msa0701550 | MtrunA17_Chr4g0039731 | 40.230 | 87 | 49 | 1 | 51 | 137 | 217 | 300 | 1.66e-12 | 65.1 |
| Msa0701550 | MtrunA17_Chr3g0086081 | 41.573 | 89 | 45 | 2 | 66 | 150 | 55 | 140 | 1.79e-12 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 183 sgRNAs with CRISPR-Local
Find 281 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGTTCGATGGCTGTTTCTT+AGG | 0.157791 | 4_4:+72934928 | None:intergenic |
| CCTTCGCATCCTGCTGCTAA+TGG | 0.197043 | 4_4:-72932715 | Msa0701550:CDS |
| CTCATGCTGCACCATCTTTC+AGG | 0.202265 | 4_4:-72933162 | Msa0701550:five_prime_UTR |
| TTCTGCTTTGTGGAAAATTC+TGG | 0.236451 | 4_4:-72931939 | Msa0701550:three_prime_UTR |
| GCATCTGACCGTGGAGGTTT+TGG | 0.250512 | 4_4:-72932301 | Msa0701550:CDS |
| GAACATGAGCCACGATAATT+TGG | 0.261063 | 4_4:+72931269 | None:intergenic |
| TTGCATAATTGATCAAATTC+TGG | 0.279236 | 4_4:-72932057 | Msa0701550:three_prime_UTR |
| CTTGTGGTTTGCAGAATTTA+AGG | 0.280595 | 4_4:-72932617 | Msa0701550:intron |
| CACCACACATCTAATTCTTT+TGG | 0.292432 | 4_4:+72931368 | None:intergenic |
| TGATGGAAAGCTTGAACTTT+CGG | 0.328819 | 4_4:-72931079 | Msa0701550:three_prime_UTR |
| CCAAATGCTAAAACAATTGA+TGG | 0.335026 | 4_4:-72931096 | Msa0701550:three_prime_UTR |
| CTCATGTTGCACCTCCTCTT+AGG | 0.335701 | 4_4:-72933069 | Msa0701550:five_prime_UTR |
| ATCCCAACATAGAGCTAATA+TGG | 0.337031 | 4_4:-72932245 | Msa0701550:CDS |
| CTCTTGTTGCACGCCGTCTT+AGG | 0.339569 | 4_4:-72933375 | Msa0701550:five_prime_UTR |
| CATCTCGCATTGCTCCTTCT+AGG | 0.357283 | 4_4:-72933111 | Msa0701550:five_prime_UTR |
| CTATGTTAAATTCTGCTTTG+TGG | 0.365307 | 4_4:-72931988 | Msa0701550:three_prime_UTR |
| ATGGAATCTACTGTATTAGT+AGG | 0.365740 | 4_4:-72931302 | Msa0701550:three_prime_UTR |
| TCCATGTTGGTCTATTCATT+TGG | 0.366885 | 4_4:+72932410 | None:intergenic |
| CTTCGCATCCTGCTGCTAAT+GGG | 0.370066 | 4_4:-72932714 | Msa0701550:CDS |
| TCCTGGGGTGTGTGCTCCTT+CGG | 0.373836 | 4_4:+72932898 | None:intergenic |
| GGGAGAGTTTACACAAAGAT+TGG | 0.387032 | 4_4:-72931432 | Msa0701550:three_prime_UTR |
| TTATAAATTGCAACCTCAAA+AGG | 0.398580 | 4_4:+72931789 | None:intergenic |
| AAGAAACAAATCTGAAGGAT+TGG | 0.402535 | 4_4:+72931623 | None:intergenic |
| CCGTTTCGATTGACGACTCT+TGG | 0.402875 | 4_4:+72933510 | None:intergenic |
| AGATCAGCTTCGTAAGGAAT+TGG | 0.404614 | 4_4:-72931150 | Msa0701550:three_prime_UTR |
| AGTTCGATGGCTGTTTCTTA+GGG | 0.408681 | 4_4:+72934929 | None:intergenic |
| ATATGCAGAATTCTGCTTTG+TGG | 0.413541 | 4_4:-72931949 | Msa0701550:three_prime_UTR |
| GCAGATGGCAGGCAAAGATC+AGG | 0.414547 | 4_4:-72933548 | Msa0701550:intron |
| TCCCTTGCAAAGACGATGCT+TGG | 0.415362 | 4_4:+72931399 | None:intergenic |
| CCAATGCCATGTTTGAAGCT+TGG | 0.416025 | 4_4:-72931743 | Msa0701550:three_prime_UTR |
| GCTTCCTCTTTCTCTGCAAC+AGG | 0.419769 | 4_4:-72934829 | Msa0701550:intron |
| TCTCATGATGCACCTCGTCT+TGG | 0.421686 | 4_4:-72933403 | Msa0701550:five_prime_UTR |
| AAGAAAACTTTATACCTTGA+TGG | 0.422308 | 4_4:-72932832 | Msa0701550:CDS |
| AGGTGTTATTCTTACGATTC+CGG | 0.428647 | 4_4:+72931592 | None:intergenic |
| GAGTACATTATGTGATCATT+GGG | 0.429070 | 4_4:-72932371 | Msa0701550:CDS |
| GATTCTACCCCTCTTGTTGA+GGG | 0.431129 | 4_4:+72932947 | None:intergenic |
| TGCAGTATGGAAAATTCTGC+TGG | 0.431863 | 4_4:-72932022 | Msa0701550:three_prime_UTR |
| CTTGTTGAGGGTGGTGTGAC+AGG | 0.434029 | 4_4:+72932959 | None:intergenic |
| GAGTGTTAAATTCTGCAGTA+TGG | 0.437899 | 4_4:-72932035 | Msa0701550:three_prime_UTR |
| TAACCATATTAGCTCTATGT+TGG | 0.441378 | 4_4:+72932242 | None:intergenic |
| CTCATGATGCACCTCGTCTT+GGG | 0.447599 | 4_4:-72933402 | Msa0701550:five_prime_UTR |
| TCAATCTCTAAAATGAGTCT+TGG | 0.450494 | 4_4:+72935005 | None:intergenic |
| ATCATCATGAACTCGGTCTC+TGG | 0.451220 | 4_4:+72931043 | None:intergenic |
| CGAGATGACTTGGGAGGAAG+TGG | 0.457519 | 4_4:+72933259 | None:intergenic |
| ACAATAGTTTCACTAGATCC+TGG | 0.459741 | 4_4:+72932881 | None:intergenic |
| TTTCTAGCCCACACATCATC+CGG | 0.462631 | 4_4:+72932490 | None:intergenic |
| AAAGGACGAGTGTATGGTCT+TGG | 0.462855 | 4_4:-72931326 | Msa0701550:three_prime_UTR |
| GATGTGTGGTGCGAGGTTGC+AGG | 0.466355 | 4_4:-72931356 | Msa0701550:three_prime_UTR |
| CCCTTGCAAAGACGATGCTT+GGG | 0.467123 | 4_4:+72931400 | None:intergenic |
| GTCACTAAAGTCTCTAAATA+CGG | 0.467331 | 4_4:-72930795 | Msa0701550:three_prime_UTR |
| GGAGTACATTATGTGATCAT+TGG | 0.470473 | 4_4:-72932372 | Msa0701550:CDS |
| CTGTGCAACACGAGATGACT+TGG | 0.471628 | 4_4:+72933249 | None:intergenic |
| TGTTGCTGTGTATAAGTTGA+AGG | 0.474432 | 4_4:-72932158 | Msa0701550:CDS |
| TCAACAAAGACACGAATTTG+AGG | 0.475522 | 4_4:-72931189 | Msa0701550:three_prime_UTR |
| AGAAACAAATCTGAAGGATT+GGG | 0.475855 | 4_4:+72931624 | None:intergenic |
| GCAATGCGAGATGTACTAGA+AGG | 0.476845 | 4_4:+72933121 | None:intergenic |
| AACCATATTAGCTCTATGTT+GGG | 0.481532 | 4_4:+72932243 | None:intergenic |
| ATAAACAAAGGACGAGTGTA+TGG | 0.489977 | 4_4:-72931332 | Msa0701550:three_prime_UTR |
| TTGGTCTATTCATTTGGCTA+CGG | 0.495039 | 4_4:+72932416 | None:intergenic |
| TCAAGTTGCGCCTCCTCCTA+AGG | 0.496171 | 4_4:-72933212 | Msa0701550:five_prime_UTR |
| TTCGATTGACGACTCTTGGA+AGG | 0.496936 | 4_4:+72933514 | None:intergenic |
| TGAGATGATTGTGAATTAGA+TGG | 0.498745 | 4_4:+72932923 | None:intergenic |
| ACTACCTGTTGCAGAGAAAG+AGG | 0.500114 | 4_4:+72934825 | None:intergenic |
| TTACTGAGCCATGGCCCTCA+TGG | 0.500324 | 4_4:-72932666 | Msa0701550:CDS |
| GGTGCAACACGAGATGCCTT+AGG | 0.500918 | 4_4:+72933304 | None:intergenic |
| GTGACATGAGATGTCCTAGA+AGG | 0.501810 | 4_4:+72933097 | None:intergenic |
| CAAGTCATCTCGTGTTGCAC+AGG | 0.502534 | 4_4:-72933248 | Msa0701550:five_prime_UTR |
| TTATATCAAGTGCAGATGGC+AGG | 0.506530 | 4_4:-72933559 | Msa0701550:intron |
| ATCTACTGTATTAGTAGGGA+AGG | 0.508889 | 4_4:-72931297 | Msa0701550:three_prime_UTR |
| ACATGTATATAAATTATGAA+TGG | 0.509021 | 4_4:-72931880 | Msa0701550:three_prime_UTR |
| TTCTTAGGGTTTGCAAGAGA+AGG | 0.511417 | 4_4:+72934943 | None:intergenic |
| GGATGTGGTGATTGAGCCAC+AGG | 0.511914 | 4_4:+72932264 | None:intergenic |
| CGAATTTGAGGAAATGAGAA+AGG | 0.512393 | 4_4:-72931177 | Msa0701550:three_prime_UTR |
| GGAGGGTCCTTTCACACCTG+TGG | 0.514036 | 4_4:-72932280 | Msa0701550:CDS |
| CAATAGTTTCACTAGATCCT+GGG | 0.514865 | 4_4:+72932882 | None:intergenic |
| AAGTGTATATAAATTATGAA+TGG | 0.516128 | 4_4:-72931822 | Msa0701550:three_prime_UTR |
| CGAGAATGCAAAGATTCGAT+TGG | 0.519441 | 4_4:+72934898 | None:intergenic |
| AATGGAGACTTTGAAACGTA+TGG | 0.519982 | 4_4:-72931862 | Msa0701550:three_prime_UTR |
| ATGGGATCGGAGATATCATC+AGG | 0.522527 | 4_4:-72932696 | Msa0701550:CDS |
| ATATGAGATGTCACAGGAGG+AGG | 0.525422 | 4_4:+72933337 | None:intergenic |
| TGATTCTACCCCTCTTGTTG+AGG | 0.525626 | 4_4:+72932946 | None:intergenic |
| TCATATTCCACCTCCACCTA+AGG | 0.531188 | 4_4:-72933320 | Msa0701550:five_prime_UTR |
| GGTGCAACATGAGATGCCTT+AGG | 0.531313 | 4_4:+72933196 | None:intergenic |
| GAGAATGCAAAGATTCGATT+GGG | 0.532254 | 4_4:+72934899 | None:intergenic |
| CTACTGTATTAGTAGGGAAG+GGG | 0.533265 | 4_4:-72931295 | Msa0701550:three_prime_UTR |
| ATATTTACCCTTGTCCATCA+AGG | 0.536192 | 4_4:+72932818 | None:intergenic |
| TCTACTGTATTAGTAGGGAA+GGG | 0.536404 | 4_4:-72931296 | Msa0701550:three_prime_UTR |
| CGAGATGCCTTAGGTGGAGG+TGG | 0.539124 | 4_4:+72933313 | None:intergenic |
| CCAAGCTTCAAACATGGCAT+TGG | 0.539820 | 4_4:+72931743 | None:intergenic |
| CATAATGTACTCCACACAGC+TGG | 0.543413 | 4_4:+72932382 | None:intergenic |
| ACCCAAGCATCGTCTTTGCA+AGG | 0.543519 | 4_4:-72931401 | Msa0701550:three_prime_UTR |
| GCAGAGAAAGAGGAAGCGTT+CGG | 0.546195 | 4_4:+72934835 | None:intergenic |
| CATCCTGCTGCTAATGGGAT+CGG | 0.549221 | 4_4:-72932709 | Msa0701550:CDS |
| GGTGCATCATGAGACGTCCT+AGG | 0.552126 | 4_4:+72933412 | None:intergenic |
| ATGTGCGCAAGAGTTGAGTT+CGG | 0.552249 | 4_4:+72934974 | None:intergenic |
| GTAGTATGAGATAATGCAGA+AGG | 0.554286 | 4_4:+72933445 | None:intergenic |
| ACATGAGATGCCTTAGGAGG+AGG | 0.558559 | 4_4:+72933202 | None:intergenic |
| TGAGTTGCAGAGGATGCGTT+CGG | 0.559100 | 4_4:+72934858 | None:intergenic |
| TCTCCGATCCCATTAGCAGC+AGG | 0.561255 | 4_4:+72932706 | None:intergenic |
| CCCAAGCATCGTCTTTGCAA+GGG | 0.567825 | 4_4:-72931400 | Msa0701550:three_prime_UTR |
| CCAAGAGTCGTCAATCGAAA+CGG | 0.568416 | 4_4:-72933510 | Msa0701550:five_prime_UTR |
| GGAAAGAGATCAGCTTCGTA+AGG | 0.568859 | 4_4:-72931156 | Msa0701550:three_prime_UTR |
| ACACGAGATGCCTTAGGTGG+AGG | 0.571947 | 4_4:+72933310 | None:intergenic |
| TTTGTCCACCGGATGATGTG+TGG | 0.575204 | 4_4:-72932498 | Msa0701550:CDS |
| TTAGGGTTTGCAAGAGAAGG+TGG | 0.577952 | 4_4:+72934946 | None:intergenic |
| GCAGTAGCAGATGTCCTAAG+AGG | 0.578232 | 4_4:+72933055 | None:intergenic |
| AAGCGTTCGGTGAGTTGCAG+AGG | 0.579576 | 4_4:+72934848 | None:intergenic |
| GATTTATACATAGGCAGTTG+AGG | 0.579629 | 4_4:+72932100 | None:intergenic |
| CCATTAGCAGCAGGATGCGA+AGG | 0.581596 | 4_4:+72932715 | None:intergenic |
| CAAATCTGAAGGATTGGGAG+GGG | 0.582027 | 4_4:+72931629 | None:intergenic |
| TCTACCCCTCTTGTTGAGGG+TGG | 0.584450 | 4_4:+72932950 | None:intergenic |
| TCCGAAGGAGCACACACCCC+AGG | 0.586218 | 4_4:-72932899 | Msa0701550:five_prime_UTR |
| TGGAATCTACTGTATTAGTA+GGG | 0.586947 | 4_4:-72931301 | Msa0701550:three_prime_UTR |
| CTACTTCCGTCTCAAACAGA+TGG | 0.587027 | 4_4:+72930831 | None:intergenic |
| ACGAGTGTATGGTCTTGGAA+TGG | 0.587127 | 4_4:-72931321 | Msa0701550:three_prime_UTR |
| GCAGCATGAGATGTACTAGA+AGG | 0.589412 | 4_4:+72933175 | None:intergenic |
| GTCACACCACCCTCAACAAG+AGG | 0.592791 | 4_4:-72932956 | Msa0701550:five_prime_UTR |
| CTGCTACTGCCCCATCACAT+AGG | 0.594431 | 4_4:-72933042 | Msa0701550:five_prime_UTR |
| CATCTGAGACAAAGCAATGG+TGG | 0.594597 | 4_4:-72932856 | Msa0701550:exon |
| ATTTGTTTCTTTACACACAC+CGG | 0.600778 | 4_4:-72931611 | Msa0701550:three_prime_UTR |
| CACCTGGGTTGACAGAAGAT+CGG | 0.601087 | 4_4:-72931574 | Msa0701550:three_prime_UTR |
| CTTTATACCTTGATGGACAA+GGG | 0.601122 | 4_4:-72932825 | Msa0701550:intron |
| ACTTTATACCTTGATGGACA+AGG | 0.602457 | 4_4:-72932826 | Msa0701550:CDS |
| ACATGAGATGTCCTATGTGA+TGG | 0.603132 | 4_4:+72933031 | None:intergenic |
| ACTTGAGATGTATTATGAGC+AGG | 0.603902 | 4_4:+72933283 | None:intergenic |
| ATGTTCTTCATCAACTGAGT+GGG | 0.606073 | 4_4:-72931252 | Msa0701550:three_prime_UTR |
| ATTAGCTCTATGTTGGGATG+TGG | 0.606500 | 4_4:+72932249 | None:intergenic |
| GCATGAAATGTCCTGAAAGA+TGG | 0.607109 | 4_4:+72933151 | None:intergenic |
| CAGATGGCAGGCAAAGATCA+GGG | 0.607266 | 4_4:-72933547 | Msa0701550:five_prime_UTR |
| GATTGAGCCACAGGTGTGAA+AGG | 0.607696 | 4_4:+72932273 | None:intergenic |
| TTGTCCACCGGATGATGTGT+GGG | 0.608023 | 4_4:-72932497 | Msa0701550:CDS |
| GTGTAAAGAAACAAATCTGA+AGG | 0.608038 | 4_4:+72931618 | None:intergenic |
| GGTGTGACAGGAGATGTCCT+AGG | 0.608106 | 4_4:+72932971 | None:intergenic |
| TAGGGTTTGCAAGAGAAGGT+GGG | 0.610051 | 4_4:+72934947 | None:intergenic |
| CTGTATTAGTAGGGAAGGGG+AGG | 0.612447 | 4_4:-72931292 | Msa0701550:three_prime_UTR |
| GCAACATGAGATGCCTTAGG+AGG | 0.612857 | 4_4:+72933199 | None:intergenic |
| ACAAATCTGAAGGATTGGGA+GGG | 0.614001 | 4_4:+72931628 | None:intergenic |
| AAAACTCCATCTGTTTGAGA+CGG | 0.614276 | 4_4:-72930837 | Msa0701550:three_prime_UTR |
| TTCCGATCTTCTGTCAACCC+AGG | 0.618483 | 4_4:+72931572 | None:intergenic |
| CATGAGATGTCCTATGTGAT+GGG | 0.620367 | 4_4:+72933032 | None:intergenic |
| AACAAATCTGAAGGATTGGG+AGG | 0.622616 | 4_4:+72931627 | None:intergenic |
| GCAACACGAGATGCCTTAGG+TGG | 0.623348 | 4_4:+72933307 | None:intergenic |
| TCACAATCATCTCATTCCGA+AGG | 0.624651 | 4_4:-72932914 | Msa0701550:five_prime_UTR |
| GGTGGAATATGAGATGTCAC+AGG | 0.624679 | 4_4:+72933331 | None:intergenic |
| ACATGAGATGTCCTACGTGC+TGG | 0.625514 | 4_4:+72933004 | None:intergenic |
| GTGCAACCAAGCTTCAAACA+TGG | 0.626097 | 4_4:+72931737 | None:intergenic |
| CTCATGTCACACGTCTACCT+AGG | 0.626514 | 4_4:-72932988 | Msa0701550:five_prime_UTR |
| GCAGTATGGAAAATTCTGCT+GGG | 0.629178 | 4_4:-72932021 | Msa0701550:three_prime_UTR |
| TCACACCACCCTCAACAAGA+GGG | 0.629366 | 4_4:-72932955 | Msa0701550:five_prime_UTR |
| CATGGATTCGTCCAGCTGTG+TGG | 0.634443 | 4_4:-72932393 | Msa0701550:CDS |
| ATTGGGAAGACTGAGTTCGA+TGG | 0.635386 | 4_4:+72934916 | None:intergenic |
| TGTGCAACACGAGATGACTT+GGG | 0.642431 | 4_4:+72933250 | None:intergenic |
| GTAGCAGATGTCCTAAGAGG+AGG | 0.643950 | 4_4:+72933058 | None:intergenic |
| ACGTTGATACAAGAGACTTG+TGG | 0.651956 | 4_4:-72932633 | Msa0701550:intron |
| CACCAAAAGAATTAGATGTG+TGG | 0.655144 | 4_4:-72931370 | Msa0701550:three_prime_UTR |
| CAGCACGAGATGACCTAAGA+CGG | 0.656008 | 4_4:+72933362 | None:intergenic |
| AATAGTTTCACTAGATCCTG+GGG | 0.656608 | 4_4:+72932883 | None:intergenic |
| AAGGGGAGGCCAAATTATCG+TGG | 0.657227 | 4_4:-72931278 | Msa0701550:three_prime_UTR |
| AGGACCCTCCAAAACCTCCA+CGG | 0.657319 | 4_4:+72932293 | None:intergenic |
| CATGTTCTTCATCAACTGAG+TGG | 0.657499 | 4_4:-72931253 | Msa0701550:three_prime_UTR |
| ATGCGAGATGTACTAGAAGG+AGG | 0.660631 | 4_4:+72933124 | None:intergenic |
| ACAGCTGGACGAATCCATGT+TGG | 0.660640 | 4_4:+72932397 | None:intergenic |
| GTTGCAGAGGATGCGTTCGG+TGG | 0.670095 | 4_4:+72934861 | None:intergenic |
| GCCAAATGAATAGACCAACA+TGG | 0.672939 | 4_4:-72932411 | Msa0701550:CDS |
| GCAACACGAGATGACTTGGG+AGG | 0.677600 | 4_4:+72933253 | None:intergenic |
| AGAAAGAACTTTGAAAGACG+AGG | 0.683206 | 4_4:-72932472 | Msa0701550:CDS |
| CACACCACCCTCAACAAGAG+GGG | 0.685669 | 4_4:-72932954 | Msa0701550:five_prime_UTR |
| GGAATATGAGATGTCACAGG+AGG | 0.689307 | 4_4:+72933334 | None:intergenic |
| ATACTACTACTCTATCACCT+AGG | 0.691047 | 4_4:-72933429 | Msa0701550:five_prime_UTR |
| GGAATCGTAAGAATAACACC+TGG | 0.693829 | 4_4:-72931590 | Msa0701550:three_prime_UTR |
| GTTGGTGATGATGATGACAC+TGG | 0.695145 | 4_4:-72931011 | Msa0701550:three_prime_UTR |
| CTAGCCCACACATCATCCGG+TGG | 0.709841 | 4_4:+72932493 | None:intergenic |
| AGAATTAGATGTGTGGTGCG+AGG | 0.715434 | 4_4:-72931363 | Msa0701550:three_prime_UTR |
| ACAAGAGATATCCCAAGACG+AGG | 0.716179 | 4_4:+72933391 | None:intergenic |
| AATCGAGCATCTGACCGTGG+AGG | 0.720404 | 4_4:-72932307 | Msa0701550:CDS |
| AGTACATTATGTGATCATTG+GGG | 0.720960 | 4_4:-72932370 | Msa0701550:CDS |
| ATGAGATGTCCTATGTGATG+GGG | 0.725591 | 4_4:+72933033 | None:intergenic |
| GAGGTTGCAGGAATAAACAA+AGG | 0.727291 | 4_4:-72931344 | Msa0701550:three_prime_UTR |
| GAATCGTAAGAATAACACCT+GGG | 0.729453 | 4_4:-72931589 | Msa0701550:three_prime_UTR |
| TTGCATCTGAGACAAAGCAA+TGG | 0.735678 | 4_4:-72932859 | Msa0701550:exon |
| TGGTGGTGAGTATTATGACG+AGG | 0.745301 | 4_4:-72930991 | Msa0701550:three_prime_UTR |
| CTCATGTTATACCAGCACGT+AGG | 0.788728 | 4_4:-72933015 | Msa0701550:five_prime_UTR |
| GGTGATGATGATGACACTGG+TGG | 0.793488 | 4_4:-72931008 | Msa0701550:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGTTTAATATGTATATATA+TGG | + | chr4_4:72931987-72932006 | None:intergenic | 10.0% |
| !!! | TATTCTTATTTTTTTTTAGA+CGG | - | chr4_4:72934055-72934074 | Msa0701550:intron | 10.0% |
| !! | AAATTATTTCATATGATCAA+AGG | + | chr4_4:72931707-72931726 | None:intergenic | 15.0% |
| !!! | AAGAAAAAAAATTGGTTTAT+TGG | + | chr4_4:72932086-72932105 | None:intergenic | 15.0% |
| !! | GTTAATATAAAGAAAAAGAA+AGG | + | chr4_4:72933508-72933527 | None:intergenic | 15.0% |
| !! | AAAAAATAGGATTTATACAT+AGG | + | chr4_4:72933631-72933650 | None:intergenic | 15.0% |
| !! | AAAATGTCTACAAAAAAAAT+AGG | + | chr4_4:72933644-72933663 | None:intergenic | 15.0% |
| !! | ACATGTATATAAATTATGAA+TGG | - | chr4_4:72933839-72933858 | Msa0701550:intron | 15.0% |
| !! | AAGTGTATATAAATTATGAA+TGG | - | chr4_4:72933897-72933916 | Msa0701550:intron | 15.0% |
| !! | ATATGAATTAAAAACATGTT+AGG | + | chr4_4:72934038-72934057 | None:intergenic | 15.0% |
| !!! | TTTTATTTTTGTAGCTGTAA+CGG | - | chr4_4:72931143-72931162 | Msa0701550:three_prime_UTR | 20.0% |
| !!! | AGTTTCACTTATAATTTTCT+CGG | + | chr4_4:72931399-72931418 | None:intergenic | 20.0% |
| !! | GGTATGTTTCATATATAATT+AGG | - | chr4_4:72933123-72933142 | Msa0701550:five_prime_UTR | 20.0% |
| !! | ATTGAAAAACAATCTAAACA+AGG | - | chr4_4:72933279-72933298 | Msa0701550:five_prime_UTR | 20.0% |
| !! | TGTGTTTCAAAATATCAATT+AGG | - | chr4_4:72934246-72934265 | Msa0701550:intron | 20.0% |
| ! | TAGATAACGATGTTTACTTA+TGG | - | chr4_4:72930922-72930941 | Msa0701550:three_prime_UTR | 25.0% |
| ! | ACGAATAGAACTTAATTCAA+GGG | + | chr4_4:72931012-72931031 | None:intergenic | 25.0% |
| ! | AACGAATAGAACTTAATTCA+AGG | + | chr4_4:72931013-72931032 | None:intergenic | 25.0% |
| !! | TGATTTTATAAGTTCCGTTA+AGG | - | chr4_4:72931098-72931117 | Msa0701550:three_prime_UTR | 25.0% |
| ! | TGTATATTACTAAGCCTTAA+CGG | + | chr4_4:72931115-72931134 | None:intergenic | 25.0% |
| ! | AACAATATCATTCAACCTTT+AGG | - | chr4_4:72932002-72932021 | Msa0701550:three_prime_UTR | 25.0% |
| ! | GACATTTATTTGAATCCTAA+AGG | + | chr4_4:72932020-72932039 | None:intergenic | 25.0% |
| ! | GCGAAAGAAAGAAAAAAAAT+TGG | + | chr4_4:72932094-72932113 | None:intergenic | 25.0% |
| !!! | TTTTTTATATCAAGTGCAGA+TGG | - | chr4_4:72932156-72932175 | Msa0701550:CDS | 25.0% |
| ! | AAGAAAACTTTATACCTTGA+TGG | - | chr4_4:72932887-72932906 | Msa0701550:five_prime_UTR | 25.0% |
| ! | CAAAAATCTACAAACAATAC+AGG | + | chr4_4:72932984-72933003 | None:intergenic | 25.0% |
| ! | TTGCATAATTGATCAAATTC+TGG | - | chr4_4:72933662-72933681 | Msa0701550:intron | 25.0% |
| ! | TTATAAATTGCAACCTCAAA+AGG | + | chr4_4:72933933-72933952 | None:intergenic | 25.0% |
| !!! | TTTTTTTAGACGGAATTGAA+TGG | - | chr4_4:72934065-72934084 | Msa0701550:intron | 25.0% |
| !! | AAAGTATGTTGCATTTTGTT+AGG | - | chr4_4:72934777-72934796 | Msa0701550:intron | 25.0% |
| !!! | GGAGTTTTTTTTTAAACTAG+TGG | + | chr4_4:72934870-72934889 | None:intergenic | 25.0% |
| ! | CATAACAACTACTAGAAAAA+AGG | + | chr4_4:72934963-72934982 | None:intergenic | 25.0% |
| !! | TCAATCTCTAAAATGAGTCT+TGG | + | chr4_4:72930717-72930736 | None:intergenic | 30.0% |
| AATGTTTCCAACTAGTAAGT+AGG | - | chr4_4:72930985-72931004 | Msa0701550:three_prime_UTR | 30.0% | |
| TTCCTTGAAAGAATCAATCT+TGG | - | chr4_4:72931064-72931083 | Msa0701550:three_prime_UTR | 30.0% | |
| ! | AACCAAGATTGATTCTTTCA+AGG | + | chr4_4:72931069-72931088 | None:intergenic | 30.0% |
| AAGGCTTAGTAATATACAAC+TGG | - | chr4_4:72931117-72931136 | Msa0701550:three_prime_UTR | 30.0% | |
| AGGCTTAGTAATATACAACT+GGG | - | chr4_4:72931118-72931137 | Msa0701550:three_prime_UTR | 30.0% | |
| AGAACCTATAGTAGAATAGA+TGG | - | chr4_4:72931300-72931319 | Msa0701550:three_prime_UTR | 30.0% | |
| TTCACCATCTATTCTACTAT+AGG | + | chr4_4:72931307-72931326 | None:intergenic | 30.0% | |
| ! | ACTATGTAGATTTTGTAGTC+AGG | - | chr4_4:72931328-72931347 | Msa0701550:three_prime_UTR | 30.0% |
| AGATCTAGAGATTAATGAGT+TGG | - | chr4_4:72931427-72931446 | Msa0701550:three_prime_UTR | 30.0% | |
| GATCTAGAGATTAATGAGTT+GGG | - | chr4_4:72931428-72931447 | Msa0701550:three_prime_UTR | 30.0% | |
| ! | TAATGAGTTGGGTAGAAATA+TGG | - | chr4_4:72931439-72931458 | Msa0701550:intron | 30.0% |
| ! | TGGTTTGTGATAGAACATTA+TGG | - | chr4_4:72931459-72931478 | Msa0701550:intron | 30.0% |
| CTATGCAATGAAACAATTGA+AGG | + | chr4_4:72931608-72931627 | None:intergenic | 30.0% | |
| ATAGTATTCCTACTACTTCT+AGG | - | chr4_4:72931624-72931643 | Msa0701550:three_prime_UTR | 30.0% | |
| TGTGGAACTAAATTGATGAA+GGG | + | chr4_4:72931769-72931788 | None:intergenic | 30.0% | |
| ATGTGGAACTAAATTGATGA+AGG | + | chr4_4:72931770-72931789 | None:intergenic | 30.0% | |
| TATGCTAACATAGTAACATG+TGG | + | chr4_4:72931787-72931806 | None:intergenic | 30.0% | |
| AATACCTTTGTCATCTTTGT+TGG | - | chr4_4:72931857-72931876 | Msa0701550:three_prime_UTR | 30.0% | |
| ! | AACTTCTAGAAGTTTCGAAA+CGG | + | chr4_4:72931921-72931940 | None:intergenic | 30.0% |
| GCAGTTTCTTTCTTCAAATT+CGG | - | chr4_4:72931961-72931980 | Msa0701550:three_prime_UTR | 30.0% | |
| TGAGATGATTGTGAATTAGA+TGG | + | chr4_4:72932799-72932818 | None:intergenic | 30.0% | |
| ! | ACAATTTTCATTTTGTCCAC+CGG | - | chr4_4:72933210-72933229 | Msa0701550:five_prime_UTR | 30.0% |
| GAGTACATTATGTGATCATT+GGG | - | chr4_4:72933348-72933367 | Msa0701550:five_prime_UTR | 30.0% | |
| AGTACATTATGTGATCATTG+GGG | - | chr4_4:72933349-72933368 | Msa0701550:five_prime_UTR | 30.0% | |
| !! | AACCATATTAGCTCTATGTT+GGG | + | chr4_4:72933479-72933498 | None:intergenic | 30.0% |
| !! | TAACCATATTAGCTCTATGT+TGG | + | chr4_4:72933480-72933499 | None:intergenic | 30.0% |
| CTATGTTAAATTCTGCTTTG+TGG | - | chr4_4:72933731-72933750 | Msa0701550:intron | 30.0% | |
| AGAAACAAATCTGAAGGATT+GGG | + | chr4_4:72934098-72934117 | None:intergenic | 30.0% | |
| AAGAAACAAATCTGAAGGAT+TGG | + | chr4_4:72934099-72934118 | None:intergenic | 30.0% | |
| GTGTAAAGAAACAAATCTGA+AGG | + | chr4_4:72934104-72934123 | None:intergenic | 30.0% | |
| ! | ATTTGTTTCTTTACACACAC+CGG | - | chr4_4:72934108-72934127 | Msa0701550:intron | 30.0% |
| AGGCTTATATTTGTGTTAAC+AGG | - | chr4_4:72934266-72934285 | Msa0701550:intron | 30.0% | |
| GGCTTATATTTGTGTTAACA+GGG | - | chr4_4:72934267-72934286 | Msa0701550:intron | 30.0% | |
| ! | ACACATCTAATTCTTTTGGT+GGG | + | chr4_4:72934350-72934369 | None:intergenic | 30.0% |
| ATGGAATCTACTGTATTAGT+AGG | - | chr4_4:72934417-72934436 | Msa0701550:intron | 30.0% | |
| TGGAATCTACTGTATTAGTA+GGG | - | chr4_4:72934418-72934437 | Msa0701550:intron | 30.0% | |
| !!! | CCATCAATTGTTTTAGCATT+TGG | + | chr4_4:72934626-72934645 | None:intergenic | 30.0% |
| CCAAATGCTAAAACAATTGA+TGG | - | chr4_4:72934623-72934642 | Msa0701550:intron | 30.0% | |
| GTCACTAAAGTCTCTAAATA+CGG | - | chr4_4:72934924-72934943 | Msa0701550:five_prime_UTR | 30.0% | |
| GAGAATGCAAAGATTCGATT+GGG | + | chr4_4:72930823-72930842 | None:intergenic | 35.0% | |
| ! | ATTATACCACTAAGTGGGTT+CGG | + | chr4_4:72931504-72931523 | None:intergenic | 35.0% |
| CAAGCATTATACCACTAAGT+GGG | + | chr4_4:72931509-72931528 | None:intergenic | 35.0% | |
| ! | TAATGCTTGGTTGTTGTTGT+TGG | - | chr4_4:72931520-72931539 | Msa0701550:intron | 35.0% |
| TTCATGAGTGATGACAATGA+AGG | + | chr4_4:72931561-72931580 | None:intergenic | 35.0% | |
| CATTGTCATCACTCATGAAT+AGG | - | chr4_4:72931562-72931581 | Msa0701550:intron | 35.0% | |
| ! | GTTGGCTAGTAGAATTTTCT+AGG | - | chr4_4:72931875-72931894 | Msa0701550:three_prime_UTR | 35.0% |
| !!! | GCAGAAGGTTTTAAAGAAGA+CGG | + | chr4_4:72932262-72932281 | None:intergenic | 35.0% |
| GTAGTATGAGATAATGCAGA+AGG | + | chr4_4:72932277-72932296 | None:intergenic | 35.0% | |
| ATACTACTACTCTATCACCT+AGG | - | chr4_4:72932290-72932309 | Msa0701550:CDS | 35.0% | |
| ACTTGAGATGTATTATGAGC+AGG | + | chr4_4:72932439-72932458 | None:intergenic | 35.0% | |
| AATAGTTTCACTAGATCCTG+GGG | + | chr4_4:72932839-72932858 | None:intergenic | 35.0% | |
| CAATAGTTTCACTAGATCCT+GGG | + | chr4_4:72932840-72932859 | None:intergenic | 35.0% | |
| ACAATAGTTTCACTAGATCC+TGG | + | chr4_4:72932841-72932860 | None:intergenic | 35.0% | |
| ! | ACTTTATACCTTGATGGACA+AGG | - | chr4_4:72932893-72932912 | Msa0701550:five_prime_UTR | 35.0% |
| ! | CTTTATACCTTGATGGACAA+GGG | - | chr4_4:72932894-72932913 | Msa0701550:five_prime_UTR | 35.0% |
| ATATTTACCCTTGTCCATCA+AGG | + | chr4_4:72932904-72932923 | None:intergenic | 35.0% | |
| ! | ACGTGTATCTTTTTCCATGA+GGG | + | chr4_4:72933070-72933089 | None:intergenic | 35.0% |
| ! | AACGTGTATCTTTTTCCATG+AGG | + | chr4_4:72933071-72933090 | None:intergenic | 35.0% |
| ! | CTTGTGGTTTGCAGAATTTA+AGG | - | chr4_4:72933102-72933121 | Msa0701550:five_prime_UTR | 35.0% |
| ! | AGAAAGAACTTTGAAAGACG+AGG | - | chr4_4:72933247-72933266 | Msa0701550:five_prime_UTR | 35.0% |
| TTGGTCTATTCATTTGGCTA+CGG | + | chr4_4:72933306-72933325 | None:intergenic | 35.0% | |
| ! | TCCATGTTGGTCTATTCATT+TGG | + | chr4_4:72933312-72933331 | None:intergenic | 35.0% |
| GGAGTACATTATGTGATCAT+TGG | - | chr4_4:72933347-72933366 | Msa0701550:five_prime_UTR | 35.0% | |
| ATCCCAACATAGAGCTAATA+TGG | - | chr4_4:72933474-72933493 | Msa0701550:five_prime_UTR | 35.0% | |
| ! | TGTTGCTGTGTATAAGTTGA+AGG | - | chr4_4:72933561-72933580 | Msa0701550:intron | 35.0% |
| GATTTATACATAGGCAGTTG+AGG | + | chr4_4:72933622-72933641 | None:intergenic | 35.0% | |
| GAGTGTTAAATTCTGCAGTA+TGG | - | chr4_4:72933684-72933703 | Msa0701550:intron | 35.0% | |
| ATATGCAGAATTCTGCTTTG+TGG | - | chr4_4:72933770-72933789 | Msa0701550:intron | 35.0% | |
| TTCTGCTTTGTGGAAAATTC+TGG | - | chr4_4:72933780-72933799 | Msa0701550:intron | 35.0% | |
| !! | AATGGAGACTTTGAAACGTA+TGG | - | chr4_4:72933857-72933876 | Msa0701550:intron | 35.0% |
| !! | AGGTGTTATTCTTACGATTC+CGG | + | chr4_4:72934130-72934149 | None:intergenic | 35.0% |
| GAATCGTAAGAATAACACCT+GGG | - | chr4_4:72934130-72934149 | Msa0701550:intron | 35.0% | |
| ! | ACATCTAATTCTTTTGGTGG+GGG | + | chr4_4:72934348-72934367 | None:intergenic | 35.0% |
| ! | CACATCTAATTCTTTTGGTG+GGG | + | chr4_4:72934349-72934368 | None:intergenic | 35.0% |
| ! | CACACATCTAATTCTTTTGG+TGG | + | chr4_4:72934351-72934370 | None:intergenic | 35.0% |
| CACCAAAAGAATTAGATGTG+TGG | - | chr4_4:72934349-72934368 | Msa0701550:intron | 35.0% | |
| ! | CACCACACATCTAATTCTTT+TGG | + | chr4_4:72934354-72934373 | None:intergenic | 35.0% |
| ATAAACAAAGGACGAGTGTA+TGG | - | chr4_4:72934387-72934406 | Msa0701550:intron | 35.0% | |
| ATCTACTGTATTAGTAGGGA+AGG | - | chr4_4:72934422-72934441 | Msa0701550:intron | 35.0% | |
| TCTACTGTATTAGTAGGGAA+GGG | - | chr4_4:72934423-72934442 | Msa0701550:intron | 35.0% | |
| ATGTTCTTCATCAACTGAGT+GGG | - | chr4_4:72934467-72934486 | Msa0701550:intron | 35.0% | |
| TCAACAAAGACACGAATTTG+AGG | - | chr4_4:72934530-72934549 | Msa0701550:intron | 35.0% | |
| CGAATTTGAGGAAATGAGAA+AGG | - | chr4_4:72934542-72934561 | Msa0701550:intron | 35.0% | |
| TGATGGAAAGCTTGAACTTT+CGG | - | chr4_4:72934640-72934659 | Msa0701550:intron | 35.0% | |
| CATCATCATCATCATGAACT+CGG | + | chr4_4:72934686-72934705 | None:intergenic | 35.0% | |
| ! | AGTTCATGATGATGATGATG+AGG | - | chr4_4:72934686-72934705 | Msa0701550:intron | 35.0% |
| AAAACTCCATCTGTTTGAGA+CGG | - | chr4_4:72934882-72934901 | Msa0701550:five_prime_UTR | 35.0% | |
| TTCTTAGGGTTTGCAAGAGA+AGG | + | chr4_4:72930779-72930798 | None:intergenic | 40.0% | |
| !! | AGTTCGATGGCTGTTTCTTA+GGG | + | chr4_4:72930793-72930812 | None:intergenic | 40.0% |
| CGAGAATGCAAAGATTCGAT+TGG | + | chr4_4:72930824-72930843 | None:intergenic | 40.0% | |
| TGTTGGGTGGTAAAACAACA+TGG | - | chr4_4:72931178-72931197 | Msa0701550:three_prime_UTR | 40.0% | |
| GTTGGGTGGTAAAACAACAT+GGG | - | chr4_4:72931179-72931198 | Msa0701550:three_prime_UTR | 40.0% | |
| !! | GAATAAGTGTAGCACTGATG+AGG | - | chr4_4:72931206-72931225 | Msa0701550:three_prime_UTR | 40.0% |
| TGTAGTCAGGAGAGATCAAA+TGG | - | chr4_4:72931341-72931360 | Msa0701550:three_prime_UTR | 40.0% | |
| CCAAGCATTATACCACTAAG+TGG | + | chr4_4:72931510-72931529 | None:intergenic | 40.0% | |
| CCACTTAGTGGTATAATGCT+TGG | - | chr4_4:72931507-72931526 | Msa0701550:intron | 40.0% | |
| CATCCACTCAACACTGAATT+TGG | - | chr4_4:72931647-72931666 | Msa0701550:three_prime_UTR | 40.0% | |
| TGAAGGGACAGTCAGAAAAA+GGG | + | chr4_4:72931753-72931772 | None:intergenic | 40.0% | |
| ATGAAGGGACAGTCAGAAAA+AGG | + | chr4_4:72931754-72931773 | None:intergenic | 40.0% | |
| CTAGCCAACAAAGATGACAA+AGG | + | chr4_4:72931864-72931883 | None:intergenic | 40.0% | |
| TTATATCAAGTGCAGATGGC+AGG | - | chr4_4:72932160-72932179 | Msa0701550:CDS | 40.0% | |
| GCATGAAATGTCCTGAAAGA+TGG | + | chr4_4:72932571-72932590 | None:intergenic | 40.0% | |
| ATGAGATGTCCTATGTGATG+GGG | + | chr4_4:72932689-72932708 | None:intergenic | 40.0% | |
| CATGAGATGTCCTATGTGAT+GGG | + | chr4_4:72932690-72932709 | None:intergenic | 40.0% | |
| ACATGAGATGTCCTATGTGA+TGG | + | chr4_4:72932691-72932710 | None:intergenic | 40.0% | |
| TCACAATCATCTCATTCCGA+AGG | - | chr4_4:72932805-72932824 | Msa0701550:intron | 40.0% | |
| ! | TTGCATCTGAGACAAAGCAA+TGG | - | chr4_4:72932860-72932879 | Msa0701550:exon | 40.0% |
| ! | GGACTAATTTTACTGAGCCA+TGG | - | chr4_4:72933044-72933063 | Msa0701550:five_prime_UTR | 40.0% |
| ACGTTGATACAAGAGACTTG+TGG | - | chr4_4:72933086-72933105 | Msa0701550:five_prime_UTR | 40.0% | |
| GCCAAATGAATAGACCAACA+TGG | - | chr4_4:72933308-72933327 | Msa0701550:five_prime_UTR | 40.0% | |
| !! | ATTAGCTCTATGTTGGGATG+TGG | + | chr4_4:72933473-72933492 | None:intergenic | 40.0% |
| TGCAGTATGGAAAATTCTGC+TGG | - | chr4_4:72933697-72933716 | Msa0701550:intron | 40.0% | |
| GCAGTATGGAAAATTCTGCT+GGG | - | chr4_4:72933698-72933717 | Msa0701550:intron | 40.0% | |
| !! | TGGAGTGTTTGAACCTTTTG+AGG | - | chr4_4:72933917-72933936 | Msa0701550:intron | 40.0% |
| ACAAATCTGAAGGATTGGGA+GGG | + | chr4_4:72934094-72934113 | None:intergenic | 40.0% | |
| AACAAATCTGAAGGATTGGG+AGG | + | chr4_4:72934095-72934114 | None:intergenic | 40.0% | |
| GGAATCGTAAGAATAACACC+TGG | - | chr4_4:72934129-72934148 | Msa0701550:intron | 40.0% | |
| GGGAGAGTTTACACAAAGAT+TGG | - | chr4_4:72934287-72934306 | Msa0701550:intron | 40.0% | |
| GAGGTTGCAGGAATAAACAA+AGG | - | chr4_4:72934375-72934394 | Msa0701550:intron | 40.0% | |
| CTACTGTATTAGTAGGGAAG+GGG | - | chr4_4:72934424-72934443 | Msa0701550:intron | 40.0% | |
| GAACATGAGCCACGATAATT+TGG | + | chr4_4:72934453-72934472 | None:intergenic | 40.0% | |
| CATGTTCTTCATCAACTGAG+TGG | - | chr4_4:72934466-72934485 | Msa0701550:intron | 40.0% | |
| AGATCAGCTTCGTAAGGAAT+TGG | - | chr4_4:72934569-72934588 | Msa0701550:intron | 40.0% | |
| ! | CATGATGATGATGATGAGGT+TGG | - | chr4_4:72934690-72934709 | Msa0701550:intron | 40.0% |
| ATGTGCGCAAGAGTTGAGTT+CGG | + | chr4_4:72930748-72930767 | None:intergenic | 45.0% | |
| TAGGGTTTGCAAGAGAAGGT+GGG | + | chr4_4:72930775-72930794 | None:intergenic | 45.0% | |
| TTAGGGTTTGCAAGAGAAGG+TGG | + | chr4_4:72930776-72930795 | None:intergenic | 45.0% | |
| !! | GAGTTCGATGGCTGTTTCTT+AGG | + | chr4_4:72930794-72930813 | None:intergenic | 45.0% |
| ATTGGGAAGACTGAGTTCGA+TGG | + | chr4_4:72930806-72930825 | None:intergenic | 45.0% | |
| ACTACCTGTTGCAGAGAAAG+AGG | + | chr4_4:72930897-72930916 | None:intergenic | 45.0% | |
| CAAGGGTCCTACTTACTAGT+TGG | + | chr4_4:72930995-72931014 | None:intergenic | 45.0% | |
| ! | GTTTTACCACCCAACACCAT+CGG | + | chr4_4:72931174-72931193 | None:intergenic | 45.0% |
| CACTGATGAGGATGTTGTGT+TGG | - | chr4_4:72931218-72931237 | Msa0701550:three_prime_UTR | 45.0% | |
| AGGATGTTGTGTTGGATGTG+TGG | - | chr4_4:72931226-72931245 | Msa0701550:three_prime_UTR | 45.0% | |
| AGTCAGGAGAGATCAAATGG+AGG | - | chr4_4:72931344-72931363 | Msa0701550:three_prime_UTR | 45.0% | |
| GAGGATTGTCAGATCACTAG+AGG | - | chr4_4:72931363-72931382 | Msa0701550:three_prime_UTR | 45.0% | |
| TGTCAGATCACTAGAGGCAA+CGG | - | chr4_4:72931369-72931388 | Msa0701550:three_prime_UTR | 45.0% | |
| AGTGGATGCCTAGAAGTAGT+AGG | + | chr4_4:72931635-72931654 | None:intergenic | 45.0% | |
| ! | CAGCCAAATTCAGTGTTGAG+TGG | + | chr4_4:72931653-72931672 | None:intergenic | 45.0% |
| TTCGATTGACGACTCTTGGA+AGG | + | chr4_4:72932208-72932227 | None:intergenic | 45.0% | |
| CCAAGAGTCGTCAATCGAAA+CGG | - | chr4_4:72932209-72932228 | Msa0701550:CDS | 45.0% | |
| ACAAGAGATATCCCAAGACG+AGG | + | chr4_4:72932331-72932350 | None:intergenic | 45.0% | |
| ATATGAGATGTCACAGGAGG+AGG | + | chr4_4:72932385-72932404 | None:intergenic | 45.0% | |
| GGAATATGAGATGTCACAGG+AGG | + | chr4_4:72932388-72932407 | None:intergenic | 45.0% | |
| GGTGGAATATGAGATGTCAC+AGG | + | chr4_4:72932391-72932410 | None:intergenic | 45.0% | |
| TCATATTCCACCTCCACCTA+AGG | - | chr4_4:72932399-72932418 | Msa0701550:CDS | 45.0% | |
| TGTGCAACACGAGATGACTT+GGG | + | chr4_4:72932472-72932491 | None:intergenic | 45.0% | |
| GCAGCATGAGATGTACTAGA+AGG | + | chr4_4:72932547-72932566 | None:intergenic | 45.0% | |
| ATGCGAGATGTACTAGAAGG+AGG | + | chr4_4:72932598-72932617 | None:intergenic | 45.0% | |
| GCAATGCGAGATGTACTAGA+AGG | + | chr4_4:72932601-72932620 | None:intergenic | 45.0% | |
| GTGACATGAGATGTCCTAGA+AGG | + | chr4_4:72932625-72932644 | None:intergenic | 45.0% | |
| CTCATGTTATACCAGCACGT+AGG | - | chr4_4:72932704-72932723 | Msa0701550:CDS | 45.0% | |
| GATTCTACCCCTCTTGTTGA+GGG | + | chr4_4:72932775-72932794 | None:intergenic | 45.0% | |
| TGATTCTACCCCTCTTGTTG+AGG | + | chr4_4:72932776-72932795 | None:intergenic | 45.0% | |
| ! | CATCTGAGACAAAGCAATGG+TGG | - | chr4_4:72932863-72932882 | Msa0701550:five_prime_UTR | 45.0% |
| ATGGGATCGGAGATATCATC+AGG | - | chr4_4:72933023-72933042 | Msa0701550:five_prime_UTR | 45.0% | |
| ! | ATCTTTTTCCATGAGGGCCA+TGG | + | chr4_4:72933064-72933083 | None:intergenic | 45.0% |
| ! | TTTCTAGCCCACACATCATC+CGG | + | chr4_4:72933232-72933251 | None:intergenic | 45.0% |
| CATAATGTACTCCACACAGC+TGG | + | chr4_4:72933340-72933359 | None:intergenic | 45.0% | |
| AAAAATCGAGCATCTGACCG+TGG | - | chr4_4:72933409-72933428 | Msa0701550:five_prime_UTR | 45.0% | |
| CCAAGCTTCAAACATGGCAT+TGG | + | chr4_4:72933979-72933998 | None:intergenic | 45.0% | |
| ! | CCAATGCCATGTTTGAAGCT+TGG | - | chr4_4:72933976-72933995 | Msa0701550:intron | 45.0% |
| GTGCAACCAAGCTTCAAACA+TGG | + | chr4_4:72933985-72934004 | None:intergenic | 45.0% | |
| CAAATCTGAAGGATTGGGAG+GGG | + | chr4_4:72934093-72934112 | None:intergenic | 45.0% | |
| AGAATTAGATGTGTGGTGCG+AGG | - | chr4_4:72934356-72934375 | Msa0701550:intron | 45.0% | |
| AAAGGACGAGTGTATGGTCT+TGG | - | chr4_4:72934393-72934412 | Msa0701550:intron | 45.0% | |
| ! | ACGAGTGTATGGTCTTGGAA+TGG | - | chr4_4:72934398-72934417 | Msa0701550:intron | 45.0% |
| GGAAAGAGATCAGCTTCGTA+AGG | - | chr4_4:72934563-72934582 | Msa0701550:intron | 45.0% | |
| ATCATCATGAACTCGGTCTC+TGG | + | chr4_4:72934679-72934698 | None:intergenic | 45.0% | |
| !! | GTTGGTGATGATGATGACAC+TGG | - | chr4_4:72934708-72934727 | Msa0701550:intron | 45.0% |
| ! | TGGTGGTGAGTATTATGACG+AGG | - | chr4_4:72934728-72934747 | Msa0701550:intron | 45.0% |
| CTACTTCCGTCTCAAACAGA+TGG | + | chr4_4:72934891-72934910 | None:intergenic | 45.0% | |
| TGAGTTGCAGAGGATGCGTT+CGG | + | chr4_4:72930864-72930883 | None:intergenic | 50.0% | |
| !! | GCAGAGAAAGAGGAAGCGTT+CGG | + | chr4_4:72930887-72930906 | None:intergenic | 50.0% |
| GCTTCCTCTTTCTCTGCAAC+AGG | - | chr4_4:72930890-72930909 | Msa0701550:three_prime_UTR | 50.0% | |
| AGCTGTAACGGTAAGACCGA+TGG | - | chr4_4:72931155-72931174 | Msa0701550:three_prime_UTR | 50.0% | |
| AACGGTAAGACCGATGGTGT+TGG | - | chr4_4:72931161-72931180 | Msa0701550:three_prime_UTR | 50.0% | |
| ACGGTAAGACCGATGGTGTT+GGG | - | chr4_4:72931162-72931181 | Msa0701550:three_prime_UTR | 50.0% | |
| ATGTAGCCGAACCCACTTAG+TGG | - | chr4_4:72931495-72931514 | Msa0701550:intron | 50.0% | |
| GGACAGTCAGAAAAAGGGCA+TGG | + | chr4_4:72931748-72931767 | None:intergenic | 50.0% | |
| CAGATGGCAGGCAAAGATCA+GGG | - | chr4_4:72932172-72932191 | Msa0701550:CDS | 50.0% | |
| CCGTTTCGATTGACGACTCT+TGG | + | chr4_4:72932212-72932231 | None:intergenic | 50.0% | |
| TCTCATGATGCACCTCGTCT+TGG | - | chr4_4:72932316-72932335 | Msa0701550:CDS | 50.0% | |
| CTCATGATGCACCTCGTCTT+GGG | - | chr4_4:72932317-72932336 | Msa0701550:CDS | 50.0% | |
| CAGCACGAGATGACCTAAGA+CGG | + | chr4_4:72932360-72932379 | None:intergenic | 50.0% | |
| CTGTGCAACACGAGATGACT+TGG | + | chr4_4:72932473-72932492 | None:intergenic | 50.0% | |
| CAAGTCATCTCGTGTTGCAC+AGG | - | chr4_4:72932471-72932490 | Msa0701550:CDS | 50.0% | |
| ACATGAGATGCCTTAGGAGG+AGG | + | chr4_4:72932520-72932539 | None:intergenic | 50.0% | |
| GCAACATGAGATGCCTTAGG+AGG | + | chr4_4:72932523-72932542 | None:intergenic | 50.0% | |
| GGTGCAACATGAGATGCCTT+AGG | + | chr4_4:72932526-72932545 | None:intergenic | 50.0% | |
| CTCATGCTGCACCATCTTTC+AGG | - | chr4_4:72932557-72932576 | Msa0701550:intron | 50.0% | |
| CATCTCGCATTGCTCCTTCT+AGG | - | chr4_4:72932608-72932627 | Msa0701550:intron | 50.0% | |
| CTCATGTTGCACCTCCTCTT+AGG | - | chr4_4:72932650-72932669 | Msa0701550:CDS | 50.0% | |
| GTAGCAGATGTCCTAAGAGG+AGG | + | chr4_4:72932664-72932683 | None:intergenic | 50.0% | |
| GCAGTAGCAGATGTCCTAAG+AGG | + | chr4_4:72932667-72932686 | None:intergenic | 50.0% | |
| ACATGAGATGTCCTACGTGC+TGG | + | chr4_4:72932718-72932737 | None:intergenic | 50.0% | |
| CTCATGTCACACGTCTACCT+AGG | - | chr4_4:72932731-72932750 | Msa0701550:intron | 50.0% | |
| TCACACCACCCTCAACAAGA+GGG | - | chr4_4:72932764-72932783 | Msa0701550:intron | 50.0% | |
| CTTCGCATCCTGCTGCTAAT+GGG | - | chr4_4:72933005-72933024 | Msa0701550:five_prime_UTR | 50.0% | |
| CATCCTGCTGCTAATGGGAT+CGG | - | chr4_4:72933010-72933029 | Msa0701550:five_prime_UTR | 50.0% | |
| TTTGTCCACCGGATGATGTG+TGG | - | chr4_4:72933221-72933240 | Msa0701550:five_prime_UTR | 50.0% | |
| TTGTCCACCGGATGATGTGT+GGG | - | chr4_4:72933222-72933241 | Msa0701550:five_prime_UTR | 50.0% | |
| ACAGCTGGACGAATCCATGT+TGG | + | chr4_4:72933325-72933344 | None:intergenic | 50.0% | |
| GATTGAGCCACAGGTGTGAA+AGG | + | chr4_4:72933449-72933468 | None:intergenic | 50.0% | |
| ! | CACCTGGGTTGACAGAAGAT+CGG | - | chr4_4:72934145-72934164 | Msa0701550:intron | 50.0% |
| TTCCGATCTTCTGTCAACCC+AGG | + | chr4_4:72934150-72934169 | None:intergenic | 50.0% | |
| ! | ACCCAAGCATCGTCTTTGCA+AGG | - | chr4_4:72934318-72934337 | Msa0701550:intron | 50.0% |
| CCCTTGCAAAGACGATGCTT+GGG | + | chr4_4:72934322-72934341 | None:intergenic | 50.0% | |
| ! | CCCAAGCATCGTCTTTGCAA+GGG | - | chr4_4:72934319-72934338 | Msa0701550:intron | 50.0% |
| TCCCTTGCAAAGACGATGCT+TGG | + | chr4_4:72934323-72934342 | None:intergenic | 50.0% | |
| CTGTATTAGTAGGGAAGGGG+AGG | - | chr4_4:72934427-72934446 | Msa0701550:intron | 50.0% | |
| AAGGGGAGGCCAAATTATCG+TGG | - | chr4_4:72934441-72934460 | Msa0701550:intron | 50.0% | |
| ! | GGTGATGATGATGACACTGG+TGG | - | chr4_4:72934711-72934730 | Msa0701550:intron | 50.0% |
| ! | AAGCGTTCGGTGAGTTGCAG+AGG | + | chr4_4:72930874-72930893 | None:intergenic | 55.0% |
| ! | GTAAGACCGATGGTGTTGGG+TGG | - | chr4_4:72931165-72931184 | Msa0701550:three_prime_UTR | 55.0% |
| GCAGATGGCAGGCAAAGATC+AGG | - | chr4_4:72932171-72932190 | Msa0701550:CDS | 55.0% | |
| GGTGCATCATGAGACGTCCT+AGG | + | chr4_4:72932310-72932329 | None:intergenic | 55.0% | |
| CTCTTGTTGCACGCCGTCTT+AGG | - | chr4_4:72932344-72932363 | Msa0701550:CDS | 55.0% | |
| ACACGAGATGCCTTAGGTGG+AGG | + | chr4_4:72932412-72932431 | None:intergenic | 55.0% | |
| GCAACACGAGATGCCTTAGG+TGG | + | chr4_4:72932415-72932434 | None:intergenic | 55.0% | |
| GGTGCAACACGAGATGCCTT+AGG | + | chr4_4:72932418-72932437 | None:intergenic | 55.0% | |
| ! | CGAGATGACTTGGGAGGAAG+TGG | + | chr4_4:72932463-72932482 | None:intergenic | 55.0% |
| ! | GCAACACGAGATGACTTGGG+AGG | + | chr4_4:72932469-72932488 | None:intergenic | 55.0% |
| ! | TCAAGTTGCGCCTCCTCCTA+AGG | - | chr4_4:72932507-72932526 | Msa0701550:CDS | 55.0% |
| CTGCTACTGCCCCATCACAT+AGG | - | chr4_4:72932677-72932696 | Msa0701550:CDS | 55.0% | |
| GGTGTGACAGGAGATGTCCT+AGG | + | chr4_4:72932751-72932770 | None:intergenic | 55.0% | |
| CTTGTTGAGGGTGGTGTGAC+AGG | + | chr4_4:72932763-72932782 | None:intergenic | 55.0% | |
| GTCACACCACCCTCAACAAG+AGG | - | chr4_4:72932763-72932782 | Msa0701550:intron | 55.0% | |
| CACACCACCCTCAACAAGAG+GGG | - | chr4_4:72932765-72932784 | Msa0701550:intron | 55.0% | |
| TCTACCCCTCTTGTTGAGGG+TGG | + | chr4_4:72932772-72932791 | None:intergenic | 55.0% | |
| CCATTAGCAGCAGGATGCGA+AGG | + | chr4_4:72933007-72933026 | None:intergenic | 55.0% | |
| CCTTCGCATCCTGCTGCTAA+TGG | - | chr4_4:72933004-72933023 | Msa0701550:five_prime_UTR | 55.0% | |
| TCTCCGATCCCATTAGCAGC+AGG | + | chr4_4:72933016-72933035 | None:intergenic | 55.0% | |
| TTACTGAGCCATGGCCCTCA+TGG | - | chr4_4:72933053-72933072 | Msa0701550:five_prime_UTR | 55.0% | |
| CATGGATTCGTCCAGCTGTG+TGG | - | chr4_4:72933326-72933345 | Msa0701550:five_prime_UTR | 55.0% | |
| AATCGAGCATCTGACCGTGG+AGG | - | chr4_4:72933412-72933431 | Msa0701550:five_prime_UTR | 55.0% | |
| ! | GCATCTGACCGTGGAGGTTT+TGG | - | chr4_4:72933418-72933437 | Msa0701550:five_prime_UTR | 55.0% |
| !! | TCTGACCGTGGAGGTTTTGG+AGG | - | chr4_4:72933421-72933440 | Msa0701550:five_prime_UTR | 55.0% |
| !!! | CTGACCGTGGAGGTTTTGGA+GGG | - | chr4_4:72933422-72933441 | Msa0701550:five_prime_UTR | 55.0% |
| AGGACCCTCCAAAACCTCCA+CGG | + | chr4_4:72933429-72933448 | None:intergenic | 55.0% | |
| GGATGTGGTGATTGAGCCAC+AGG | + | chr4_4:72933458-72933477 | None:intergenic | 55.0% | |
| GTTGCAGAGGATGCGTTCGG+TGG | + | chr4_4:72930861-72930880 | None:intergenic | 60.0% | |
| CGAGATGCCTTAGGTGGAGG+TGG | + | chr4_4:72932409-72932428 | None:intergenic | 60.0% | |
| TCCTGGGGTGTGTGCTCCTT+CGG | + | chr4_4:72932824-72932843 | None:intergenic | 60.0% | |
| CTAGCCCACACATCATCCGG+TGG | + | chr4_4:72933229-72933248 | None:intergenic | 60.0% | |
| GGAGGGTCCTTTCACACCTG+TGG | - | chr4_4:72933439-72933458 | Msa0701550:five_prime_UTR | 60.0% | |
| GATGTGTGGTGCGAGGTTGC+AGG | - | chr4_4:72934363-72934382 | Msa0701550:intron | 60.0% | |
| ! | TCCGAAGGAGCACACACCCC+AGG | - | chr4_4:72932820-72932839 | Msa0701550:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 72930707 | 72935034 | 72930707 | ID=Msa0701550;Name=Msa0701550 |
| chr4_4 | mRNA | 72930707 | 72935034 | 72930707 | ID=Msa0701550-mRNA-1;Parent=Msa0701550;Name=Msa0701550-mRNA-1;_AED=0.07;_eAED=0.07;_QI=909|0.8|0.66|1|0.6|0.16|6|1316|185 |
| chr4_4 | exon | 72930707 | 72931453 | 72930707 | ID=Msa0701550-mRNA-1:exon:22352;Parent=Msa0701550-mRNA-1 |
| chr4_4 | exon | 72931563 | 72932533 | 72931563 | ID=Msa0701550-mRNA-1:exon:22351;Parent=Msa0701550-mRNA-1 |
| chr4_4 | exon | 72932618 | 72932625 | 72932618 | ID=Msa0701550-mRNA-1:exon:22350;Parent=Msa0701550-mRNA-1 |
| chr4_4 | exon | 72932634 | 72932744 | 72932634 | ID=Msa0701550-mRNA-1:exon:22349;Parent=Msa0701550-mRNA-1 |
| chr4_4 | exon | 72932826 | 72933566 | 72932826 | ID=Msa0701550-mRNA-1:exon:22348;Parent=Msa0701550-mRNA-1 |
| chr4_4 | exon | 72934830 | 72935034 | 72934830 | ID=Msa0701550-mRNA-1:exon:22347;Parent=Msa0701550-mRNA-1 |
| chr4_4 | five_prime_UTR | 72934830 | 72935034 | 72934830 | ID=Msa0701550-mRNA-1:five_prime_utr;Parent=Msa0701550-mRNA-1 |
| chr4_4 | five_prime_UTR | 72932863 | 72933566 | 72932863 | ID=Msa0701550-mRNA-1:five_prime_utr;Parent=Msa0701550-mRNA-1 |
| chr4_4 | CDS | 72932826 | 72932862 | 72932826 | ID=Msa0701550-mRNA-1:cds;Parent=Msa0701550-mRNA-1 |
| chr4_4 | CDS | 72932634 | 72932744 | 72932634 | ID=Msa0701550-mRNA-1:cds;Parent=Msa0701550-mRNA-1 |
| chr4_4 | CDS | 72932618 | 72932625 | 72932618 | ID=Msa0701550-mRNA-1:cds;Parent=Msa0701550-mRNA-1 |
| chr4_4 | CDS | 72932132 | 72932533 | 72932132 | ID=Msa0701550-mRNA-1:cds;Parent=Msa0701550-mRNA-1 |
| chr4_4 | three_prime_UTR | 72931563 | 72932131 | 72931563 | ID=Msa0701550-mRNA-1:three_prime_utr;Parent=Msa0701550-mRNA-1 |
| chr4_4 | three_prime_UTR | 72930707 | 72931453 | 72930707 | ID=Msa0701550-mRNA-1:three_prime_utr;Parent=Msa0701550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
