Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0702600 | AET04407.2 | 96.262 | 107 | 4 | 0 | 1 | 107 | 1 | 107 | 8.11e-68 | 210 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0702600 | G7L8R7 | 96.262 | 107 | 4 | 0 | 1 | 107 | 1 | 107 | 3.87e-68 | 210 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0702330 | Msa0702600 | 0.877433 | 6.309556e-69 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0702600 | MtrunA17_Chr8g0380491 | 93.636 | 110 | 7 | 0 | 1 | 110 | 1 | 110 | 1.40e-71 | 209 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0702600 | AT1G55365.1 | 49.275 | 69 | 33 | 1 | 1 | 67 | 1 | 69 | 5.06e-16 | 68.9 |
Find 20 sgRNAs with CRISPR-Local
Find 305 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGATGATGCTTCTGCTTC+TGG | 0.168743 | 4_4:-74295450 | Msa0702600:CDS |
| AAAAGCTGATCACTGTTTAT+TGG | 0.179925 | 4_4:+74295606 | None:intergenic |
| AAGAAGATAAGAAGAGTAAA+AGG | 0.234240 | 4_4:+74295497 | None:intergenic |
| AATAAACAGTGATCAGCTTT+TGG | 0.289636 | 4_4:-74295604 | Msa0702600:CDS |
| TAAGAAGAGTAAAAGGAATA+AGG | 0.294983 | 4_4:+74295504 | None:intergenic |
| CCACAAGACAGACAAGAAAA+TGG | 0.358339 | 4_4:-74295706 | Msa0702600:exon |
| CTCACAAATTGCTCTTTACA+AGG | 0.439746 | 4_4:+74291853 | None:intergenic |
| TGTTTCCCTCTTCATCAACT+TGG | 0.458525 | 4_4:-74295570 | Msa0702600:CDS |
| GTGTAGAAATCAAATTATCT+AGG | 0.474489 | 4_4:-74295808 | Msa0702600:five_prime_UTR |
| GAGTAAAAGGAATAAGGTTG+AGG | 0.501247 | 4_4:+74295510 | None:intergenic |
| CACTCATTCTCAAGGAGTCA+AGG | 0.538743 | 4_4:+74295828 | None:intergenic |
| TTATCTAGGTGAGGTGAAGT+AGG | 0.543154 | 4_4:-74295794 | Msa0702600:five_prime_UTR |
| GATTTCTACACTCATTCTCA+AGG | 0.553797 | 4_4:+74295820 | None:intergenic |
| GAAAATGGTGTTAAACACTC+AGG | 0.567582 | 4_4:-74295691 | Msa0702600:exon |
| AGACGACCAAGTTGATGAAG+AGG | 0.585076 | 4_4:+74295564 | None:intergenic |
| GACGACCAAGTTGATGAAGA+GGG | 0.605275 | 4_4:+74295565 | None:intergenic |
| GAGGTGAAGTAGGTAGCAGA+AGG | 0.607950 | 4_4:-74295784 | Msa0702600:five_prime_UTR |
| TGTCTGCACAAACGTGGCAA+TGG | 0.611212 | 4_4:-74295647 | Msa0702600:CDS |
| GAAATCAAATTATCTAGGTG+AGG | 0.614759 | 4_4:-74295803 | Msa0702600:five_prime_UTR |
| CACGTGTGTCTGCACAAACG+TGG | 0.716541 | 4_4:-74295653 | Msa0702600:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCAATTAATATAATATCAA+AGG | + | chr4_4:74293411-74293430 | None:intergenic | 10.0% |
| !! | TTTGATATTATATTAATTGA+AGG | - | chr4_4:74293410-74293429 | Msa0702600:intron | 10.0% |
| !! | TCAAAAAAAAAAAGATTTAA+GGG | + | chr4_4:74294785-74294804 | None:intergenic | 10.0% |
| !! | TTCAAAAAAAAAAAGATTTA+AGG | + | chr4_4:74294786-74294805 | None:intergenic | 10.0% |
| !!! | TAAATCTTTTTTTTTTTGAA+CGG | - | chr4_4:74294786-74294805 | Msa0702600:intron | 10.0% |
| !!! | TTTTCTTCATCTTTTTTTAA+TGG | - | chr4_4:74292325-74292344 | Msa0702600:intron | 15.0% |
| !!! | TTTCTTCATCTTTTTTTAAT+GGG | - | chr4_4:74292326-74292345 | Msa0702600:intron | 15.0% |
| !!! | TTATTTTTACATTAATTGAC+TGG | - | chr4_4:74292373-74292392 | Msa0702600:intron | 15.0% |
| !!! | TATTTTTACATTAATTGACT+GGG | - | chr4_4:74292374-74292393 | Msa0702600:intron | 15.0% |
| !! | AGATAATATAAAACAAGTTT+AGG | - | chr4_4:74292720-74292739 | Msa0702600:intron | 15.0% |
| !!! | AAAAAATAGTATTGCTTTTT+AGG | + | chr4_4:74293064-74293083 | None:intergenic | 15.0% |
| !!! | AAAGCAATACTATTTTTTAT+TGG | - | chr4_4:74293066-74293085 | Msa0702600:intron | 15.0% |
| !!! | TTTTTCTTTAATATTTCCAT+TGG | - | chr4_4:74294230-74294249 | Msa0702600:intron | 15.0% |
| !! | AAAATTATGAGTATAATCAT+GGG | - | chr4_4:74294600-74294619 | Msa0702600:intron | 15.0% |
| !! | CAACTTGAATTTAAATAATA+TGG | + | chr4_4:74295351-74295370 | None:intergenic | 15.0% |
| !! | AATTCTTCGTATTGTATATT+TGG | - | chr4_4:74292822-74292841 | Msa0702600:intron | 20.0% |
| !! | AGATTATTAAGAGATCAATT+TGG | - | chr4_4:74292861-74292880 | Msa0702600:intron | 20.0% |
| !! | GTAATGAATAATGTATGTAT+AGG | - | chr4_4:74293288-74293307 | Msa0702600:intron | 20.0% |
| !! | ATATAAAAATGATAGCCTAT+AGG | - | chr4_4:74293461-74293480 | Msa0702600:intron | 20.0% |
| !!! | AGAATTGCTTTCTTATATTT+TGG | - | chr4_4:74293905-74293924 | Msa0702600:intron | 20.0% |
| !!! | GAATTGCTTTCTTATATTTT+GGG | - | chr4_4:74293906-74293925 | Msa0702600:intron | 20.0% |
| !!! | GCAGATTAAAACTTTAAAAT+AGG | + | chr4_4:74294004-74294023 | None:intergenic | 20.0% |
| !! | TATTAAAGAAAAAGTTGGAA+TGG | + | chr4_4:74294223-74294242 | None:intergenic | 20.0% |
| !! | GGAAATATTAAAGAAAAAGT+TGG | + | chr4_4:74294228-74294247 | None:intergenic | 20.0% |
| !! | CAAAATTATGAGTATAATCA+TGG | - | chr4_4:74294599-74294618 | Msa0702600:intron | 20.0% |
| !! | TTAATATTTATTCCTTTGTC+CGG | - | chr4_4:74294834-74294853 | Msa0702600:intron | 20.0% |
| !! | TTATGAGAGAATAAAGAAAT+CGG | - | chr4_4:74295254-74295273 | Msa0702600:intron | 20.0% |
| !! | TGAATTTAAATAATATGGTC+CGG | + | chr4_4:74295346-74295365 | None:intergenic | 20.0% |
| !!! | TAAAAGATGCTTTTATACAA+TGG | + | chr4_4:74295772-74295791 | None:intergenic | 20.0% |
| ! | GTGTAGAAATCAAATTATCT+AGG | - | chr4_4:74291879-74291898 | Msa0702600:intron | 25.0% |
| ! | TAAGAAGAGTAAAAGGAATA+AGG | + | chr4_4:74292186-74292205 | None:intergenic | 25.0% |
| ! | AAGAAGATAAGAAGAGTAAA+AGG | + | chr4_4:74292193-74292212 | None:intergenic | 25.0% |
| !! | TGTTGTTGCTTAATGTTTAT+TGG | - | chr4_4:74292429-74292448 | Msa0702600:intron | 25.0% |
| !! | GTTGTTGCTTAATGTTTATT+GGG | - | chr4_4:74292430-74292449 | Msa0702600:intron | 25.0% |
| ! | ATAGTATTGTTTGATGAACT+TGG | - | chr4_4:74292491-74292510 | Msa0702600:intron | 25.0% |
| !!! | ATACGTTTTGATTTTATCAC+CGG | + | chr4_4:74292682-74292701 | None:intergenic | 25.0% |
| !! | ATTATCTAGAGTAGATAATG+TGG | - | chr4_4:74292889-74292908 | Msa0702600:intron | 25.0% |
| ! | AAAAACTATGAACTTCCTAA+TGG | - | chr4_4:74292935-74292954 | Msa0702600:intron | 25.0% |
| !! | ATTATGATAACTTGTCCATT+AGG | + | chr4_4:74292953-74292972 | None:intergenic | 25.0% |
| ! | AATGGACAAGTTATCATAAT+TGG | - | chr4_4:74292953-74292972 | Msa0702600:intron | 25.0% |
| ! | ATGGACAAGTTATCATAATT+GGG | - | chr4_4:74292954-74292973 | Msa0702600:intron | 25.0% |
| ! | ACTGGGTATAAAAAAAATTG+AGG | - | chr4_4:74293102-74293121 | Msa0702600:intron | 25.0% |
| !!! | TTTGATCCATTTTGGTTTTT+TGG | - | chr4_4:74293226-74293245 | Msa0702600:intron | 25.0% |
| ! | TTATTGTGTGAGTTCTATTT+AGG | - | chr4_4:74293322-74293341 | Msa0702600:intron | 25.0% |
| ! | TTCTATGAATCTTTACCTAT+AGG | + | chr4_4:74293479-74293498 | None:intergenic | 25.0% |
| ! | TTATTCAATGAAGCAAAAAG+AGG | - | chr4_4:74293540-74293559 | Msa0702600:intron | 25.0% |
| ! | AGTGAGAATATTATGTAAGT+AGG | + | chr4_4:74293572-74293591 | None:intergenic | 25.0% |
| !! | ACAAAACCCTAATTAAGTTT+TGG | - | chr4_4:74293609-74293628 | Msa0702600:intron | 25.0% |
| ! | GTACAACCAAAACTTAATTA+GGG | + | chr4_4:74293618-74293637 | None:intergenic | 25.0% |
| ! | TGTACAACCAAAACTTAATT+AGG | + | chr4_4:74293619-74293638 | None:intergenic | 25.0% |
| !! | AACCAAAATCTTTTCACATT+AGG | + | chr4_4:74293673-74293692 | None:intergenic | 25.0% |
| ! | ATCTACTTGGATATAAGAAA+TGG | + | chr4_4:74293762-74293781 | None:intergenic | 25.0% |
| ! | ACTCAAAAGAAAACGATAAA+TGG | + | chr4_4:74293815-74293834 | None:intergenic | 25.0% |
| ! | TAAATAAGAAGCAACTTAGA+TGG | + | chr4_4:74293856-74293875 | None:intergenic | 25.0% |
| !! | AAAAGAGTGTAAAGTTTACT+GGG | + | chr4_4:74293963-74293982 | None:intergenic | 25.0% |
| !! | TAAACTTTACACTCTTTTGT+AGG | - | chr4_4:74293965-74293984 | Msa0702600:intron | 25.0% |
| !!! | TAAAACTTTAAAATAGGAGC+CGG | + | chr4_4:74293998-74294017 | None:intergenic | 25.0% |
| ! | AAGAACTTATGCATCAATTT+GGG | + | chr4_4:74294030-74294049 | None:intergenic | 25.0% |
| ! | AAAGAACTTATGCATCAATT+TGG | + | chr4_4:74294031-74294050 | None:intergenic | 25.0% |
| ! | AAGAGAGTTTAAACATATGA+GGG | + | chr4_4:74294161-74294180 | None:intergenic | 25.0% |
| ! | TAAGAGAGTTTAAACATATG+AGG | + | chr4_4:74294162-74294181 | None:intergenic | 25.0% |
| ! | TCATATGTTTAAACTCTCTT+AGG | - | chr4_4:74294161-74294180 | Msa0702600:intron | 25.0% |
| !! | ATATTTCCATTGGTAATTGT+TGG | - | chr4_4:74294240-74294259 | Msa0702600:intron | 25.0% |
| !! | TAAACCTTGTTATCACATAT+AGG | - | chr4_4:74294383-74294402 | Msa0702600:intron | 25.0% |
| !! | CAAGTCTTTTCCAATTTATT+AGG | + | chr4_4:74294416-74294435 | None:intergenic | 25.0% |
| ! | TAGAAATTCAAATCTTACAG+AGG | + | chr4_4:74294496-74294515 | None:intergenic | 25.0% |
| !!! | ATTTCTAGTTTCTGAAGAAT+AGG | - | chr4_4:74294509-74294528 | Msa0702600:intron | 25.0% |
| ! | AAATGTGAGTCATAATTTGA+AGG | - | chr4_4:74295163-74295182 | Msa0702600:intron | 25.0% |
| !! | AAACATAGTCTTTTATTGCT+CGG | - | chr4_4:74295219-74295238 | Msa0702600:intron | 25.0% |
| ! | AAAAATCAGATAATGCAACT+GGG | + | chr4_4:74295683-74295702 | None:intergenic | 25.0% |
| ! | ATCCAATATCTTCTTTCTAA+TGG | - | chr4_4:74295709-74295728 | Msa0702600:exon | 25.0% |
| ! | ATCCATTAGAAAGAAGATAT+TGG | + | chr4_4:74295714-74295733 | None:intergenic | 25.0% |
| GAAATCAAATTATCTAGGTG+AGG | - | chr4_4:74291884-74291903 | Msa0702600:intron | 30.0% | |
| AAAAGCTGATCACTGTTTAT+TGG | + | chr4_4:74292084-74292103 | None:intergenic | 30.0% | |
| ! | AATAAACAGTGATCAGCTTT+TGG | - | chr4_4:74292083-74292102 | Msa0702600:intron | 30.0% |
| AATTGTACAATCTGATCTGA+TGG | - | chr4_4:74292534-74292553 | Msa0702600:intron | 30.0% | |
| TTGTCTGATGAACTTTCTAA+CGG | - | chr4_4:74292577-74292596 | Msa0702600:intron | 30.0% | |
| TTCCAACAATTATAGCCTAT+AGG | - | chr4_4:74292606-74292625 | Msa0702600:intron | 30.0% | |
| ! | TTCGTATTGTATATTTGGTG+AGG | - | chr4_4:74292827-74292846 | Msa0702600:intron | 30.0% |
| TGGACAAGTTATCATAATTG+GGG | - | chr4_4:74292955-74292974 | Msa0702600:intron | 30.0% | |
| ATTGGAGATACTATTACTAC+TGG | - | chr4_4:74293084-74293103 | Msa0702600:intron | 30.0% | |
| TTGGAGATACTATTACTACT+GGG | - | chr4_4:74293085-74293104 | Msa0702600:intron | 30.0% | |
| GAACTTCCAAAAAACCAAAA+TGG | + | chr4_4:74293235-74293254 | None:intergenic | 30.0% | |
| !!! | GGTTTTTTGGAAGTTCAAAT+CGG | - | chr4_4:74293239-74293258 | Msa0702600:intron | 30.0% |
| !!! | GTTTTTTGGAAGTTCAAATC+GGG | - | chr4_4:74293240-74293259 | Msa0702600:intron | 30.0% |
| AATGTATGTATAGGATGAGA+TGG | - | chr4_4:74293297-74293316 | Msa0702600:intron | 30.0% | |
| AATTCATGCACATCTAACAA+TGG | + | chr4_4:74293358-74293377 | None:intergenic | 30.0% | |
| ! | AAATCTTTTCACATTAGGTG+AGG | + | chr4_4:74293668-74293687 | None:intergenic | 30.0% |
| ! | CACCTAATGTGAAAAGATTT+TGG | - | chr4_4:74293668-74293687 | Msa0702600:intron | 30.0% |
| !!! | TGAAAAGATTTTGGTTGTAG+TGG | - | chr4_4:74293677-74293696 | Msa0702600:intron | 30.0% |
| ! | TTTAGCTCAACGTACTATAT+TGG | - | chr4_4:74293720-74293739 | Msa0702600:intron | 30.0% |
| !!! | TTTTGGGATTTGCTATCATT+TGG | - | chr4_4:74293922-74293941 | Msa0702600:intron | 30.0% |
| !! | TTTGGGATTTGCTATCATTT+GGG | - | chr4_4:74293923-74293942 | Msa0702600:intron | 30.0% |
| ! | CAAAAGAGTGTAAAGTTTAC+TGG | + | chr4_4:74293964-74293983 | None:intergenic | 30.0% |
| !! | AAAACTTTAAAATAGGAGCC+GGG | + | chr4_4:74293997-74294016 | None:intergenic | 30.0% |
| AGAAAGACTTTAATTCTAGC+AGG | + | chr4_4:74294064-74294083 | None:intergenic | 30.0% | |
| CTGTTCACAAAAAAAGAAGA+AGG | + | chr4_4:74294197-74294216 | None:intergenic | 30.0% | |
| !!! | CTTCTTCTTTTTTTGTGAAC+AGG | - | chr4_4:74294195-74294214 | Msa0702600:intron | 30.0% |
| GAATTTCCAACAATTACCAA+TGG | + | chr4_4:74294249-74294268 | None:intergenic | 30.0% | |
| CTAAGAGGGAATCAAAATTA+AGG | + | chr4_4:74294274-74294293 | None:intergenic | 30.0% | |
| ! | TCTGTGAAAACTACTGTTTT+GGG | + | chr4_4:74294328-74294347 | None:intergenic | 30.0% |
| ! | AGAGTGTCTGTAGATAATAA+GGG | - | chr4_4:74294345-74294364 | Msa0702600:intron | 30.0% |
| ATATATGTCGTATCTTTGTC+TGG | - | chr4_4:74294459-74294478 | Msa0702600:intron | 30.0% | |
| ATTCAAATCTTACAGAGGAT+AGG | + | chr4_4:74294491-74294510 | None:intergenic | 30.0% | |
| TATGAGTATAATCATGGGAT+TGG | - | chr4_4:74294605-74294624 | Msa0702600:intron | 30.0% | |
| !!! | TCATGTTTTTAGTTGTGATC+AGG | + | chr4_4:74294662-74294681 | None:intergenic | 30.0% |
| ACAATTCAACATGACTTCTA+CGG | + | chr4_4:74294686-74294705 | None:intergenic | 30.0% | |
| ACTAAGAATGCATACAGAAA+AGG | + | chr4_4:74295133-74295152 | None:intergenic | 30.0% | |
| ACAACAATAATCTTGCAAAC+CGG | - | chr4_4:74295324-74295343 | Msa0702600:intron | 30.0% | |
| CAAACCTAAGCTTGAATAAT+AGG | - | chr4_4:74295378-74295397 | Msa0702600:intron | 30.0% | |
| CTTTCCTATTATTCAAGCTT+AGG | + | chr4_4:74295385-74295404 | None:intergenic | 30.0% | |
| CTAAGCTTGAATAATAGGAA+AGG | - | chr4_4:74295383-74295402 | Msa0702600:intron | 30.0% | |
| !! | ATTCATTATGTTTTGCTGTG+AGG | - | chr4_4:74295533-74295552 | Msa0702600:CDS | 30.0% |
| AAAATCAGATAATGCAACTG+GGG | + | chr4_4:74295682-74295701 | None:intergenic | 30.0% | |
| GAAAAATCAGATAATGCAAC+TGG | + | chr4_4:74295684-74295703 | None:intergenic | 30.0% | |
| ! | AAGATGCTTTTATACAATGG+AGG | + | chr4_4:74295769-74295788 | None:intergenic | 30.0% |
| GATTTCTACACTCATTCTCA+AGG | + | chr4_4:74291870-74291889 | None:intergenic | 35.0% | |
| ! | GAAAATGGTGTTAAACACTC+AGG | - | chr4_4:74291996-74292015 | Msa0702600:intron | 35.0% |
| GAGTAAAAGGAATAAGGTTG+AGG | + | chr4_4:74292180-74292199 | None:intergenic | 35.0% | |
| TGCCTATAGGCTATAATTGT+TGG | + | chr4_4:74292611-74292630 | None:intergenic | 35.0% | |
| AACAATTATAGCCTATAGGC+AGG | - | chr4_4:74292610-74292629 | Msa0702600:intron | 35.0% | |
| ACAATTATAGCCTATAGGCA+GGG | - | chr4_4:74292611-74292630 | Msa0702600:intron | 35.0% | |
| ! | CGAATGAAGACTCTTTTTGA+AGG | + | chr4_4:74292752-74292771 | None:intergenic | 35.0% |
| TTGCTTCAGTAAATACACGT+AGG | + | chr4_4:74292791-74292810 | None:intergenic | 35.0% | |
| ACTTCCATTCCAATCATAGA+TGG | + | chr4_4:74293016-74293035 | None:intergenic | 35.0% | |
| TTGCTGGAATGGAGATATTA+AGG | - | chr4_4:74293035-74293054 | Msa0702600:intron | 35.0% | |
| TGCTGGAATGGAGATATTAA+GGG | - | chr4_4:74293036-74293055 | Msa0702600:intron | 35.0% | |
| ACAATGATTCAGCTACCTAT+AGG | + | chr4_4:74293189-74293208 | None:intergenic | 35.0% | |
| AGCTGAATCATTGTATTAGC+AGG | - | chr4_4:74293195-74293214 | Msa0702600:intron | 35.0% | |
| !! | TGCTAGGTTTTGATCCATTT+TGG | - | chr4_4:74293218-74293237 | Msa0702600:intron | 35.0% |
| ! | ATTGGTCTACTTGGTTAGAT+GGG | - | chr4_4:74293263-74293282 | Msa0702600:intron | 35.0% |
| !!! | CTTAATTAGGGTTTTGTTCG+TGG | + | chr4_4:74293606-74293625 | None:intergenic | 35.0% |
| !! | ACGTACTATATTGGCTTGAA+AGG | - | chr4_4:74293729-74293748 | Msa0702600:intron | 35.0% |
| AGGGTAAGAGAAAATCTACT+TGG | + | chr4_4:74293775-74293794 | None:intergenic | 35.0% | |
| ATAAATGGATCAAGTGAGAC+AGG | + | chr4_4:74293800-74293819 | None:intergenic | 35.0% | |
| ACTTATGCATCAATTTGGGA+GGG | + | chr4_4:74294026-74294045 | None:intergenic | 35.0% | |
| AACTTATGCATCAATTTGGG+AGG | + | chr4_4:74294027-74294046 | None:intergenic | 35.0% | |
| GAGGATAGTACAATAGTTCA+AGG | + | chr4_4:74294094-74294113 | None:intergenic | 35.0% | |
| ! | ATCTAGAAGAGTTGATTAGG+AGG | + | chr4_4:74294119-74294138 | None:intergenic | 35.0% |
| TCCTAATCAACTCTTCTAGA+TGG | - | chr4_4:74294118-74294137 | Msa0702600:intron | 35.0% | |
| CCTAATCAACTCTTCTAGAT+GGG | - | chr4_4:74294119-74294138 | Msa0702600:intron | 35.0% | |
| CTAATCAACTCTTCTAGATG+GGG | - | chr4_4:74294120-74294139 | Msa0702600:intron | 35.0% | |
| AGAGGGAATCAAAATTAAGG+CGG | + | chr4_4:74294271-74294290 | None:intergenic | 35.0% | |
| ! | CTGTGAAAACTACTGTTTTG+GGG | + | chr4_4:74294327-74294346 | None:intergenic | 35.0% |
| ! | CTCTGTGAAAACTACTGTTT+TGG | + | chr4_4:74294329-74294348 | None:intergenic | 35.0% |
| ! | CAGAGTGTCTGTAGATAATA+AGG | - | chr4_4:74294344-74294363 | Msa0702600:intron | 35.0% |
| CACACCTATATGTGATAACA+AGG | + | chr4_4:74294390-74294409 | None:intergenic | 35.0% | |
| ! | CTTGTTATCACATATAGGTG+TGG | - | chr4_4:74294388-74294407 | Msa0702600:intron | 35.0% |
| AGGTGTGGAACCTAATAAAT+TGG | - | chr4_4:74294403-74294422 | Msa0702600:intron | 35.0% | |
| ! | TTCTGAAGAATAGGCTTTAG+TGG | - | chr4_4:74294518-74294537 | Msa0702600:intron | 35.0% |
| ! | TCTGAAGAATAGGCTTTAGT+GGG | - | chr4_4:74294519-74294538 | Msa0702600:intron | 35.0% |
| TTAAGGGATTGAAATGTCAG+AGG | + | chr4_4:74294769-74294788 | None:intergenic | 35.0% | |
| AGATTTAAGGGATTGAGAAG+GGG | + | chr4_4:74294934-74294953 | None:intergenic | 35.0% | |
| CAGATTTAAGGGATTGAGAA+GGG | + | chr4_4:74294935-74294954 | None:intergenic | 35.0% | |
| TCAGATTTAAGGGATTGAGA+AGG | + | chr4_4:74294936-74294955 | None:intergenic | 35.0% | |
| AATGGTTGAGATAGAGATTC+TGG | - | chr4_4:74294983-74295002 | Msa0702600:intron | 35.0% | |
| TTGAAGCAAATCAAACGATG+AGG | + | chr4_4:74295042-74295061 | None:intergenic | 35.0% | |
| ACTCACAGATAAGAACAGAT+TGG | + | chr4_4:74295108-74295127 | None:intergenic | 35.0% | |
| ! | GCATGTTTTCTTTTGAACCA+GGG | - | chr4_4:74295493-74295512 | Msa0702600:CDS | 35.0% |
| ! | CATGTTTTCTTTTGAACCAG+GGG | - | chr4_4:74295494-74295513 | Msa0702600:CDS | 35.0% |
| CAGGCAAATTCCTATCAAAA+GGG | + | chr4_4:74295603-74295622 | None:intergenic | 35.0% | |
| ACTTCATGAGGATAATTAGC+AGG | + | chr4_4:74295622-74295641 | None:intergenic | 35.0% | |
| AAATGTCACATCACTTCATG+AGG | + | chr4_4:74295634-74295653 | None:intergenic | 35.0% | |
| TCATGAAGTGATGTGACATT+TGG | - | chr4_4:74295633-74295652 | Msa0702600:CDS | 35.0% | |
| GTGATTCTTGTGATTCTTGT+AGG | - | chr4_4:74295796-74295815 | Msa0702600:five_prime_UTR | 35.0% | |
| TTATCTAGGTGAGGTGAAGT+AGG | - | chr4_4:74291893-74291912 | Msa0702600:intron | 40.0% | |
| ! | CCATTTTCTTGTCTGTCTTG+TGG | + | chr4_4:74291984-74292003 | None:intergenic | 40.0% |
| CCACAAGACAGACAAGAAAA+TGG | - | chr4_4:74291981-74292000 | Msa0702600:intron | 40.0% | |
| TGTTTCCCTCTTCATCAACT+TGG | - | chr4_4:74292117-74292136 | Msa0702600:intron | 40.0% | |
| !! | ACAATCTGATCTGATGGACT+TGG | - | chr4_4:74292540-74292559 | Msa0702600:intron | 40.0% |
| TTATCATAATTGGGGCTGAG+AGG | - | chr4_4:74292963-74292982 | Msa0702600:intron | 40.0% | |
| CAATCATAGATGGCTGGAAA+AGG | + | chr4_4:74293006-74293025 | None:intergenic | 40.0% | |
| ! | CTTTTCCAGCCATCTATGAT+TGG | - | chr4_4:74293004-74293023 | Msa0702600:intron | 40.0% |
| ATGATTGGAATGGAAGTTGC+TGG | - | chr4_4:74293019-74293038 | Msa0702600:intron | 40.0% | |
| GCTGGAATGGAGATATTAAG+GGG | - | chr4_4:74293037-74293056 | Msa0702600:intron | 40.0% | |
| CTGGAATGGAGATATTAAGG+GGG | - | chr4_4:74293038-74293057 | Msa0702600:intron | 40.0% | |
| TCATTGTATTAGCAGGTGCT+AGG | - | chr4_4:74293202-74293221 | Msa0702600:intron | 40.0% | |
| TTGGAAGTTCAAATCGGGAT+TGG | - | chr4_4:74293245-74293264 | Msa0702600:intron | 40.0% | |
| !! | GATTGGTCTACTTGGTTAGA+TGG | - | chr4_4:74293262-74293281 | Msa0702600:intron | 40.0% |
| !!! | TAGGGTTTTGTTCGTGGAAA+CGG | + | chr4_4:74293600-74293619 | None:intergenic | 40.0% |
| ! | CATTAGGTGAGGTTAGCTAA+GGG | + | chr4_4:74293657-74293676 | None:intergenic | 40.0% |
| ! | ACATTAGGTGAGGTTAGCTA+AGG | + | chr4_4:74293658-74293677 | None:intergenic | 40.0% |
| !!! | TTTTGGTTGTAGTGGATCTC+TGG | - | chr4_4:74293685-74293704 | Msa0702600:intron | 40.0% |
| !! | TTTGGTTGTAGTGGATCTCT+GGG | - | chr4_4:74293686-74293705 | Msa0702600:intron | 40.0% |
| !! | GGATTTGCTATCATTTGGGA+TGG | - | chr4_4:74293927-74293946 | Msa0702600:intron | 40.0% |
| ! | TTGCTATCATTTGGGATGGA+TGG | - | chr4_4:74293931-74293950 | Msa0702600:intron | 40.0% |
| ! | TAGAAGAGTTGATTAGGAGG+AGG | + | chr4_4:74294116-74294135 | None:intergenic | 40.0% |
| ! | CCCATCTAGAAGAGTTGATT+AGG | + | chr4_4:74294122-74294141 | None:intergenic | 40.0% |
| CTTCTAGATGGGGCTTATAT+TGG | - | chr4_4:74294130-74294149 | Msa0702600:intron | 40.0% | |
| !!! | GAAAACTACTGTTTTGGGGT+TGG | + | chr4_4:74294323-74294342 | None:intergenic | 40.0% |
| !! | GATAATAAGGGTGTCTCTGT+AGG | - | chr4_4:74294357-74294376 | Msa0702600:intron | 40.0% |
| CAGTGTATGCTAAAACTCAG+CGG | + | chr4_4:74294637-74294656 | None:intergenic | 40.0% | |
| AGCTAAGGGTTAAGTAGATG+GGG | + | chr4_4:74294875-74294894 | None:intergenic | 40.0% | |
| GAGCTAAGGGTTAAGTAGAT+GGG | + | chr4_4:74294876-74294895 | None:intergenic | 40.0% | |
| TGAGCTAAGGGTTAAGTAGA+TGG | + | chr4_4:74294877-74294896 | None:intergenic | 40.0% | |
| ATTTAAGGGATTGAGAAGGG+GGG | + | chr4_4:74294932-74294951 | None:intergenic | 40.0% | |
| GATTTAAGGGATTGAGAAGG+GGG | + | chr4_4:74294933-74294952 | None:intergenic | 40.0% | |
| TCAAGAGGGGTCAGATTTAA+GGG | + | chr4_4:74294946-74294965 | None:intergenic | 40.0% | |
| ATCAAGAGGGGTCAGATTTA+AGG | + | chr4_4:74294947-74294966 | None:intergenic | 40.0% | |
| ATTTCCCCATGGCTTCAAAA+TGG | - | chr4_4:74294965-74294984 | Msa0702600:intron | 40.0% | |
| !!! | TCAACCATTTTGAAGCCATG+GGG | + | chr4_4:74294972-74294991 | None:intergenic | 40.0% |
| !!! | CTCAACCATTTTGAAGCCAT+GGG | + | chr4_4:74294973-74294992 | None:intergenic | 40.0% |
| !!! | TCTCAACCATTTTGAAGCCA+TGG | + | chr4_4:74294974-74294993 | None:intergenic | 40.0% |
| GTTGAGATAGAGATTCTGGT+TGG | - | chr4_4:74294987-74295006 | Msa0702600:intron | 40.0% | |
| ! | TTGGTGGTTTGAGTACCTAT+GGG | - | chr4_4:74295006-74295025 | Msa0702600:intron | 40.0% |
| AAAGACTATGTTTGCATGCG+TGG | + | chr4_4:74295212-74295231 | None:intergenic | 40.0% | |
| GCCATCATGACATGAATGTT+GGG | - | chr4_4:74295276-74295295 | Msa0702600:intron | 40.0% | |
| ACCCAACATTCATGTCATGA+TGG | + | chr4_4:74295280-74295299 | None:intergenic | 40.0% | |
| ! | CGCATGTTTTCTTTTGAACC+AGG | - | chr4_4:74295492-74295511 | Msa0702600:CDS | 40.0% |
| !! | TTATGTTTTGCTGTGAGGTG+TGG | - | chr4_4:74295538-74295557 | Msa0702600:CDS | 40.0% |
| !! | GAGCTTTATGCCCTTTTGAT+AGG | - | chr4_4:74295590-74295609 | Msa0702600:CDS | 40.0% |
| GCAGGCAAATTCCTATCAAA+AGG | + | chr4_4:74295604-74295623 | None:intergenic | 40.0% | |
| GTGATGTGACATTTGGATGA+TGG | - | chr4_4:74295640-74295659 | Msa0702600:CDS | 40.0% | |
| CACTCATTCTCAAGGAGTCA+AGG | + | chr4_4:74291862-74291881 | None:intergenic | 45.0% | |
| !! | GACGACCAAGTTGATGAAGA+GGG | + | chr4_4:74292125-74292144 | None:intergenic | 45.0% |
| !! | AGACGACCAAGTTGATGAAG+AGG | + | chr4_4:74292126-74292145 | None:intergenic | 45.0% |
| ! | TCTGATGATGCTTCTGCTTC+TGG | - | chr4_4:74292237-74292256 | Msa0702600:intron | 45.0% |
| ! | ACACGTAGGAAGTCTCGTTT+TGG | + | chr4_4:74292777-74292796 | None:intergenic | 45.0% |
| GGAAAAGGACTTCTAGGCAA+CGG | + | chr4_4:74292991-74293010 | None:intergenic | 45.0% | |
| ATGGCTGGAAAAGGACTTCT+AGG | + | chr4_4:74292997-74293016 | None:intergenic | 45.0% | |
| CCATTCCAATCATAGATGGC+TGG | + | chr4_4:74293012-74293031 | None:intergenic | 45.0% | |
| CCAGCCATCTATGATTGGAA+TGG | - | chr4_4:74293009-74293028 | Msa0702600:intron | 45.0% | |
| TGGAATGGAAGTTGCTGGAA+TGG | - | chr4_4:74293024-74293043 | Msa0702600:intron | 45.0% | |
| AAAATTGAGGCCCATCCTTG+AGG | - | chr4_4:74293115-74293134 | Msa0702600:intron | 45.0% | |
| AAATTGAGGCCCATCCTTGA+GGG | - | chr4_4:74293116-74293135 | Msa0702600:intron | 45.0% | |
| ATTCAGCTACCTATAGGCAG+GGG | + | chr4_4:74293183-74293202 | None:intergenic | 45.0% | |
| GATTCAGCTACCTATAGGCA+GGG | + | chr4_4:74293184-74293203 | None:intergenic | 45.0% | |
| TGATTCAGCTACCTATAGGC+AGG | + | chr4_4:74293185-74293204 | None:intergenic | 45.0% | |
| !! | CAAATCGGGATTGGTCTACT+TGG | - | chr4_4:74293254-74293273 | Msa0702600:intron | 45.0% |
| ! | GTGAGGTTAGCTAAGGGATA+CGG | + | chr4_4:74293651-74293670 | None:intergenic | 45.0% |
| ! | CTCTTTTGTAGGTGAAGACC+CGG | - | chr4_4:74293976-74293995 | Msa0702600:intron | 45.0% |
| ! | AAGAGTTGATTAGGAGGAGG+AGG | + | chr4_4:74294113-74294132 | None:intergenic | 45.0% |
| AATGATGGCAACCGACAAAC+AGG | + | chr4_4:74294300-74294319 | None:intergenic | 45.0% | |
| !!! | CTGTTTTGGGGTTGGAATGA+TGG | + | chr4_4:74294315-74294334 | None:intergenic | 45.0% |
| TTTAGTGGGATGCTGTGATC+TGG | - | chr4_4:74294533-74294552 | Msa0702600:intron | 45.0% | |
| AGGGATTGAAATGTCAGAGG+AGG | + | chr4_4:74294766-74294785 | None:intergenic | 45.0% | |
| GTTAAGTAGATGGGGATCCT+GGG | + | chr4_4:74294867-74294886 | None:intergenic | 45.0% | |
| !! | GCTCAACTGGTTTGAGCTAA+GGG | + | chr4_4:74294889-74294908 | None:intergenic | 45.0% |
| AAGCCATGGGGAAATCAAGA+GGG | + | chr4_4:74294960-74294979 | None:intergenic | 45.0% | |
| ! | GAGATAGAGATTCTGGTTGG+TGG | - | chr4_4:74294990-74295009 | Msa0702600:intron | 45.0% |
| !! | GTTGGTGGTTTGAGTACCTA+TGG | - | chr4_4:74295005-74295024 | Msa0702600:intron | 45.0% |
| TGGTTTGAGTACCTATGGGT+GGG | - | chr4_4:74295010-74295029 | Msa0702600:intron | 45.0% | |
| ACCTCATTTGTGTGTGTGAG+TGG | - | chr4_4:74295064-74295083 | Msa0702600:intron | 45.0% | |
| ACCACTCACACACACAAATG+AGG | + | chr4_4:74295068-74295087 | None:intergenic | 45.0% | |
| GGCCATCATGACATGAATGT+TGG | - | chr4_4:74295275-74295294 | Msa0702600:intron | 45.0% | |
| CATTGTTAGAACATCACCCC+TGG | + | chr4_4:74295513-74295532 | None:intergenic | 45.0% | |
| GAGGTGAAGTAGGTAGCAGA+AGG | - | chr4_4:74291903-74291922 | Msa0702600:intron | 50.0% | |
| TGTCTGCACAAACGTGGCAA+TGG | - | chr4_4:74292040-74292059 | Msa0702600:intron | 50.0% | |
| TCGGCTCAGGGAATGAAAAG+AGG | - | chr4_4:74292656-74292675 | Msa0702600:intron | 50.0% | |
| CTCAGGGAATGAAAAGAGGC+CGG | - | chr4_4:74292660-74292679 | Msa0702600:intron | 50.0% | |
| GCAAACAGCTCAAACGAGCT+GGG | + | chr4_4:74293145-74293164 | None:intergenic | 50.0% | |
| TGCAAACAGCTCAAACGAGC+TGG | + | chr4_4:74293146-74293165 | None:intergenic | 50.0% | |
| GTTAGCTAAGGGATACGGTC+TGG | + | chr4_4:74293646-74293665 | None:intergenic | 50.0% | |
| GGATCAAGTGAGACAGGAGA+GGG | + | chr4_4:74293794-74293813 | None:intergenic | 50.0% | |
| TGGATCAAGTGAGACAGGAG+AGG | + | chr4_4:74293795-74293814 | None:intergenic | 50.0% | |
| CGACAAACAGGCAGCTAAGA+GGG | + | chr4_4:74294288-74294307 | None:intergenic | 50.0% | |
| CCTCTTAGCTGCCTGTTTGT+CGG | - | chr4_4:74294286-74294305 | Msa0702600:intron | 50.0% | |
| ! | GTGATGTGTAGCCTTGAGTG+TGG | - | chr4_4:74294704-74294723 | Msa0702600:intron | 50.0% |
| CTGGGTTCAAAACCGGACAA+AGG | + | chr4_4:74294849-74294868 | None:intergenic | 50.0% | |
| !!! | CTTTGTCCGGTTTTGAACCC+AGG | - | chr4_4:74294847-74294866 | Msa0702600:intron | 50.0% |
| GGTTAAGTAGATGGGGATCC+TGG | + | chr4_4:74294868-74294887 | None:intergenic | 50.0% | |
| !! | GGCTCAACTGGTTTGAGCTA+AGG | + | chr4_4:74294890-74294909 | None:intergenic | 50.0% |
| AGCCATGGGGAAATCAAGAG+GGG | + | chr4_4:74294959-74294978 | None:intergenic | 50.0% | |
| GAAGCCATGGGGAAATCAAG+AGG | + | chr4_4:74294961-74294980 | None:intergenic | 50.0% | |
| GTGGTTTGAGTACCTATGGG+TGG | - | chr4_4:74295009-74295028 | Msa0702600:intron | 50.0% | |
| TGAGGATATCACCCACCCAT+AGG | + | chr4_4:74295024-74295043 | None:intergenic | 50.0% | |
| CTACCTCTCTGACAGCAAAG+CGG | + | chr4_4:74295417-74295436 | None:intergenic | 50.0% | |
| CACGTGTGTCTGCACAAACG+TGG | - | chr4_4:74292034-74292053 | Msa0702600:intron | 55.0% | |
| AGCCTCCGAATTCTCAGGGA+CGG | + | chr4_4:74292637-74292656 | None:intergenic | 55.0% | |
| TCCCTGAGAATTCGGAGGCT+CGG | - | chr4_4:74292637-74292656 | Msa0702600:intron | 55.0% | |
| CCGACAAACAGGCAGCTAAG+AGG | + | chr4_4:74294289-74294308 | None:intergenic | 55.0% | |
| AGCCTTGAGTGTGGCATTGC+TGG | - | chr4_4:74294713-74294732 | Msa0702600:intron | 55.0% | |
| GCCTTGAGTGTGGCATTGCT+GGG | - | chr4_4:74294714-74294733 | Msa0702600:intron | 55.0% | |
| TCCCAGCAATGCCACACTCA+AGG | + | chr4_4:74294718-74294737 | None:intergenic | 55.0% | |
| GGGGATCCTGGGTTCAAAAC+CGG | + | chr4_4:74294856-74294875 | None:intergenic | 55.0% | |
| AAGGGATTGAGAAGGGGGGT+GGG | + | chr4_4:74294928-74294947 | None:intergenic | 55.0% | |
| TAAGGGATTGAGAAGGGGGG+TGG | + | chr4_4:74294929-74294948 | None:intergenic | 55.0% | |
| GACCCCTCTTGATTTCCCCA+TGG | - | chr4_4:74294954-74294973 | Msa0702600:intron | 55.0% | |
| CAGGGCCGTCCCTGAGAATT+CGG | - | chr4_4:74292629-74292648 | Msa0702600:intron | 60.0% | |
| GCCGAGCCTCCGAATTCTCA+GGG | + | chr4_4:74292641-74292660 | None:intergenic | 60.0% | |
| AGCCGAGCCTCCGAATTCTC+AGG | + | chr4_4:74292642-74292661 | None:intergenic | 60.0% | |
| AGAATTCGGAGGCTCGGCTC+AGG | - | chr4_4:74292643-74292662 | Msa0702600:intron | 60.0% | |
| GAATTCGGAGGCTCGGCTCA+GGG | - | chr4_4:74292644-74292663 | Msa0702600:intron | 60.0% | |
| TTGAGGCCCATCCTTGAGGG+AGG | - | chr4_4:74293119-74293138 | Msa0702600:intron | 60.0% | |
| TGAGCTGTTTGCACCCCCTC+AGG | - | chr4_4:74293153-74293172 | Msa0702600:intron | 60.0% | |
| GAGCTGTTTGCACCCCCTCA+GGG | - | chr4_4:74293154-74293173 | Msa0702600:intron | 60.0% | |
| TAGGGGTTGGGTGGCTCAAC+TGG | + | chr4_4:74294902-74294921 | None:intergenic | 60.0% | |
| AGGGATTGAGAAGGGGGGTG+GGG | + | chr4_4:74294927-74294946 | None:intergenic | 60.0% | |
| ! | CAGCCGCTTTGCTGTCAGAG+AGG | - | chr4_4:74295411-74295430 | Msa0702600:CDS | 60.0% |
| TCAGGGACGGCCCTGCCTAT+AGG | + | chr4_4:74292624-74292643 | None:intergenic | 65.0% | |
| GGCCGTCCCTGAGAATTCGG+AGG | - | chr4_4:74292632-74292651 | Msa0702600:intron | 65.0% | |
| GCTGGGCCTCCCTCAAGGAT+GGG | + | chr4_4:74293128-74293147 | None:intergenic | 65.0% | |
| AGCTGGGCCTCCCTCAAGGA+TGG | + | chr4_4:74293129-74293148 | None:intergenic | 65.0% | |
| AACGAGCTGGGCCTCCCTCA+AGG | + | chr4_4:74293133-74293152 | None:intergenic | 65.0% | |
| !! | ATAGGCAGGGGCGTCCCTGA+GGG | + | chr4_4:74293171-74293190 | None:intergenic | 65.0% |
| !! | TATAGGCAGGGGCGTCCCTG+AGG | + | chr4_4:74293172-74293191 | None:intergenic | 65.0% |
| TCAGGGACGCCCCTGCCTAT+AGG | - | chr4_4:74293171-74293190 | Msa0702600:intron | 65.0% | |
| AGAAGGGGGGTGGGGTGTAG+GGG | + | chr4_4:74294919-74294938 | None:intergenic | 65.0% | |
| GAGAAGGGGGGTGGGGTGTA+GGG | + | chr4_4:74294920-74294939 | None:intergenic | 65.0% | |
| TGAGAAGGGGGGTGGGGTGT+AGG | + | chr4_4:74294921-74294940 | None:intergenic | 65.0% | |
| !! | TAGGCAGGGGCGTCCCTGAG+GGG | + | chr4_4:74293170-74293189 | None:intergenic | 70.0% |
| GGTGGGGTGTAGGGGTTGGG+TGG | + | chr4_4:74294911-74294930 | None:intergenic | 70.0% | |
| GGGGGTGGGGTGTAGGGGTT+GGG | + | chr4_4:74294914-74294933 | None:intergenic | 70.0% | |
| !! | AGGCAGGGGCGTCCCTGAGG+GGG | + | chr4_4:74293169-74293188 | None:intergenic | 75.0% |
| GGGGGGTGGGGTGTAGGGGT+TGG | + | chr4_4:74294915-74294934 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 74291854 | 74295855 | 74291854 | ID=Msa0702600;Name=Msa0702600 |
| chr4_4 | mRNA | 74291854 | 74295855 | 74291854 | ID=Msa0702600-mRNA-1;Parent=Msa0702600;Name=Msa0702600-mRNA-1;_AED=0.19;_eAED=0.25;_QI=146|0|0.5|1|1|1|2|0|118 |
| chr4_4 | exon | 74291854 | 74291891 | 74291854 | ID=Msa0702600-mRNA-1:exon:23136;Parent=Msa0702600-mRNA-1 |
| chr4_4 | exon | 74295391 | 74295855 | 74295391 | ID=Msa0702600-mRNA-1:exon:23135;Parent=Msa0702600-mRNA-1 |
| chr4_4 | five_prime_UTR | 74295710 | 74295855 | 74295710 | ID=Msa0702600-mRNA-1:five_prime_utr;Parent=Msa0702600-mRNA-1 |
| chr4_4 | CDS | 74295391 | 74295709 | 74295391 | ID=Msa0702600-mRNA-1:cds;Parent=Msa0702600-mRNA-1 |
| chr4_4 | CDS | 74291854 | 74291891 | 74291854 | ID=Msa0702600-mRNA-1:cds;Parent=Msa0702600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
