Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0702840 | XP_003629981.1 | 98.104 | 211 | 4 | 0 | 1 | 211 | 1 | 211 | 1.15e-150 | 427 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0702840 | sp|Q6IDL4|P24D3_ARATH | 67.150 | 207 | 67 | 1 | 6 | 211 | 11 | 217 | 2.10e-105 | 305 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0702840 | G7L9I3 | 98.104 | 211 | 4 | 0 | 1 | 211 | 1 | 211 | 5.48e-151 | 427 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0618470 | Msa0702840 | 0.834931 | 2.253299e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0702840 | MtrunA17_Chr8g0380801 | 98.104 | 211 | 4 | 0 | 1 | 211 | 1 | 211 | 1.05e-154 | 427 |
| Msa0702840 | MtrunA17_Chr2g0277981 | 72.642 | 212 | 51 | 3 | 1 | 211 | 1 | 206 | 5.29e-111 | 316 |
| Msa0702840 | MtrunA17_Chr3g0114751 | 65.877 | 211 | 68 | 2 | 3 | 211 | 9 | 217 | 8.07e-101 | 291 |
| Msa0702840 | MtrunA17_Chr5g0423921 | 70.213 | 188 | 53 | 2 | 24 | 211 | 28 | 212 | 2.28e-93 | 271 |
| Msa0702840 | MtrunA17_Chr8g0380821 | 98.198 | 111 | 2 | 0 | 101 | 211 | 2 | 112 | 5.77e-75 | 221 |
| Msa0702840 | MtrunA17_Chr4g0042721 | 41.919 | 198 | 102 | 3 | 22 | 211 | 24 | 216 | 5.91e-55 | 174 |
| Msa0702840 | MtrunA17_Chr6g0453521 | 40.306 | 196 | 105 | 2 | 24 | 211 | 21 | 212 | 5.31e-53 | 169 |
| Msa0702840 | MtrunA17_Chr5g0417891 | 34.579 | 214 | 126 | 4 | 8 | 211 | 10 | 219 | 2.12e-42 | 142 |
| Msa0702840 | MtrunA17_Chr7g0217911 | 43.448 | 145 | 81 | 1 | 67 | 211 | 5 | 148 | 7.35e-41 | 136 |
| Msa0702840 | MtrunA17_Chr5g0417901 | 32.524 | 206 | 134 | 4 | 8 | 211 | 12 | 214 | 3.04e-33 | 119 |
| Msa0702840 | MtrunA17_Chr5g0417931 | 33.023 | 215 | 129 | 5 | 8 | 211 | 13 | 223 | 2.35e-31 | 114 |
| Msa0702840 | MtrunA17_Chr1g0204631 | 26.486 | 185 | 127 | 4 | 27 | 207 | 27 | 206 | 1.60e-13 | 66.6 |
| Msa0702840 | MtrunA17_Chr7g0260361 | 27.397 | 146 | 101 | 2 | 62 | 207 | 12 | 152 | 1.12e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0702840 | AT1G09580.1 | 67.150 | 207 | 67 | 1 | 6 | 211 | 11 | 217 | 2.14e-106 | 305 |
| Msa0702840 | AT1G57620.1 | 65.714 | 210 | 72 | 0 | 2 | 211 | 3 | 212 | 3.42e-104 | 299 |
| Msa0702840 | AT1G21900.1 | 70.157 | 191 | 53 | 3 | 24 | 211 | 27 | 216 | 2.97e-94 | 274 |
| Msa0702840 | AT3G10780.1 | 55.000 | 200 | 84 | 3 | 17 | 211 | 19 | 217 | 2.33e-69 | 211 |
| Msa0702840 | AT1G14010.1 | 42.857 | 210 | 112 | 5 | 7 | 211 | 6 | 212 | 2.24e-52 | 168 |
| Msa0702840 | AT1G26690.1 | 39.713 | 209 | 115 | 5 | 8 | 211 | 12 | 214 | 2.96e-52 | 167 |
| Msa0702840 | AT1G69460.1 | 37.900 | 219 | 117 | 5 | 2 | 211 | 6 | 214 | 2.90e-48 | 157 |
| Msa0702840 | AT2G03290.1 | 38.384 | 198 | 114 | 3 | 20 | 211 | 18 | 213 | 8.61e-48 | 156 |
| Msa0702840 | AT3G29070.1 | 39.583 | 192 | 111 | 4 | 24 | 211 | 35 | 225 | 1.77e-44 | 148 |
| Msa0702840 | AT2G03040.1 | 35.762 | 151 | 89 | 4 | 20 | 164 | 18 | 166 | 4.55e-28 | 104 |
Find 64 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAAACGACGACGTTATTC+TGG | 0.202384 | 4_4:-74654898 | None:intergenic |
| TTCACACAGAATTCAGAATT+TGG | 0.212037 | 4_4:-74654709 | None:intergenic |
| GGAACTACCTGGCATGCTTT+TGG | 0.252996 | 4_4:+74655984 | Msa0702840:CDS |
| CCAGAATAACGTCGTCGTTT+TGG | 0.269487 | 4_4:+74654898 | Msa0702840:CDS |
| GTGAACCTTGACTGGAAAAT+TGG | 0.288089 | 4_4:+74656043 | Msa0702840:CDS |
| TACCTTCCACACTCGCTATC+TGG | 0.307658 | 4_4:+74654831 | Msa0702840:CDS |
| TTTAGAGAGAGAAGGGGCTA+TGG | 0.349116 | 4_4:+74654757 | Msa0702840:exon |
| TCAGAAGAAGAAGCTTATAT+AGG | 0.352870 | 4_4:+74657026 | Msa0702840:CDS |
| TGGTTGATTGATTGGTAGCT+AGG | 0.397666 | 4_4:-74654674 | None:intergenic |
| AATTCAGAATTTGGATCTGT+TGG | 0.402588 | 4_4:-74654700 | None:intergenic |
| TTGGAATTGCAGCCAAGGAT+TGG | 0.404517 | 4_4:+74656062 | Msa0702840:CDS |
| GATTTCTTCGGAGACGCATT+TGG | 0.406641 | 4_4:-74654876 | None:intergenic |
| TGGAATTGCAGCCAAGGATT+GGG | 0.419986 | 4_4:+74656063 | Msa0702840:CDS |
| GTTGGGTATGGTTGATTGAT+TGG | 0.420425 | 4_4:-74654682 | None:intergenic |
| CTTGAGCTGAGAAAGCTAGA+AGG | 0.424644 | 4_4:+74656729 | Msa0702840:CDS |
| GACGCATTTGGTACCGGTGG+TGG | 0.436098 | 4_4:-74654864 | None:intergenic |
| TTCGGAGACGCATTTGGTAC+CGG | 0.451076 | 4_4:-74654870 | None:intergenic |
| ATTCAGAATTTGGATCTGTT+GGG | 0.457594 | 4_4:-74654699 | None:intergenic |
| TGGTTTAGTATTATGTCGTT+AGG | 0.458318 | 4_4:+74656952 | Msa0702840:CDS |
| TGAAAATTTGCTCTATCTGA+AGG | 0.460174 | 4_4:+74656770 | Msa0702840:CDS |
| CTTTAGGTAACATCACCATA+TGG | 0.460528 | 4_4:+74655896 | Msa0702840:intron |
| AGGTTAGTGTGAACCTTGAC+TGG | 0.462981 | 4_4:+74656035 | Msa0702840:CDS |
| GAATTTGGATCTGTTGGGTA+TGG | 0.463938 | 4_4:-74654694 | None:intergenic |
| GAGTCTCAGCTTTGCAATTG+TGG | 0.475357 | 4_4:+74656986 | Msa0702840:CDS |
| TTGGGACTCAGTTGCTAAGA+AGG | 0.475920 | 4_4:+74656081 | Msa0702840:CDS |
| GACGTTATTCTGGATTTCTT+CGG | 0.476995 | 4_4:-74654888 | None:intergenic |
| TGATGAAGATTGTTTCCATA+TGG | 0.488589 | 4_4:-74655911 | None:intergenic |
| AGCAACTGAGTCCCAATCCT+TGG | 0.491833 | 4_4:-74656074 | None:intergenic |
| GGACTACGGGTATGATCATC+GGG | 0.494222 | 4_4:-74654938 | None:intergenic |
| GCATTTACGACTCAAGAGAC+TGG | 0.507558 | 4_4:+74655962 | Msa0702840:CDS |
| TGACAGCGAGAGTGGGACTA+CGG | 0.514356 | 4_4:-74654952 | None:intergenic |
| CATCTACCCAAAAGCATGCC+AGG | 0.519642 | 4_4:-74655991 | None:intergenic |
| AAAATTGGAAACTCTGTAAG+TGG | 0.524529 | 4_4:-74657152 | None:intergenic |
| CATTACCTTGACAGCGAGAG+TGG | 0.529347 | 4_4:-74654960 | None:intergenic |
| AAAGCTAGAAGGAGCTGTAG+AGG | 0.537093 | 4_4:+74656740 | Msa0702840:CDS |
| AGCCAGATAGCGAGTGTGGA+AGG | 0.543450 | 4_4:-74654833 | None:intergenic |
| CACAAAGAGAATACAACACA+TGG | 0.546181 | 4_4:+74655932 | Msa0702840:CDS |
| GCGTGTGTTTAGAGAGAGAA+GGG | 0.546751 | 4_4:+74654750 | Msa0702840:five_prime_UTR |
| GGGACTACGGGTATGATCAT+CGG | 0.549429 | 4_4:-74654939 | None:intergenic |
| ATTTGCTCTATCTGAAGGGA+AGG | 0.554587 | 4_4:+74656775 | Msa0702840:CDS |
| GAAAATTGGAATTGCAGCCA+AGG | 0.558923 | 4_4:+74656057 | Msa0702840:CDS |
| CGTAAGCCAGATAGCGAGTG+TGG | 0.559231 | 4_4:-74654837 | None:intergenic |
| GATTGATTGAGAAGATGCAG+AGG | 0.562203 | 4_4:-74654805 | None:intergenic |
| TCTGGCTGGTACTTGTAAGT+AGG | 0.563061 | 4_4:-74657117 | None:intergenic |
| TCAAGAGACTGGGAACTACC+TGG | 0.566601 | 4_4:+74655973 | Msa0702840:CDS |
| GAAAATTTGCTCTATCTGAA+GGG | 0.566763 | 4_4:+74656771 | Msa0702840:CDS |
| CATTTACGACTCAAGAGACT+GGG | 0.567095 | 4_4:+74655963 | Msa0702840:CDS |
| GACAGCGAGAGTGGGACTAC+GGG | 0.568049 | 4_4:-74654951 | None:intergenic |
| TAGTCCCACTCTCGCTGTCA+AGG | 0.570992 | 4_4:+74654955 | Msa0702840:CDS |
| ATCGTGAGTGAAAGAACAAA+CGG | 0.572432 | 4_4:+74656919 | Msa0702840:CDS |
| TGCGTGTGTTTAGAGAGAGA+AGG | 0.586449 | 4_4:+74654749 | Msa0702840:five_prime_UTR |
| ACGCATTTGGTACCGGTGGT+GGG | 0.588544 | 4_4:-74654863 | None:intergenic |
| TGGCTTACGTTACCCACCAC+CGG | 0.590818 | 4_4:+74654851 | Msa0702840:CDS |
| TGCTAAGAAGGAGAAGATTG+AGG | 0.593000 | 4_4:+74656093 | Msa0702840:CDS |
| GAACAAACGGCAGAGTGGCA+TGG | 0.610011 | 4_4:+74656932 | Msa0702840:CDS |
| TGTTCAGGGAAGCAGAGATG+AGG | 0.614511 | 4_4:+74656896 | Msa0702840:intron |
| ATGTCGTTAGGTATCTGCAT+TGG | 0.618449 | 4_4:+74656964 | Msa0702840:CDS |
| AAATGCATTATAATAAACAT+CGG | 0.643846 | 4_4:-74657184 | None:intergenic |
| ATTACCTTGACAGCGAGAGT+GGG | 0.651605 | 4_4:-74654959 | None:intergenic |
| GGAGACGCATTTGGTACCGG+TGG | 0.661357 | 4_4:-74654867 | None:intergenic |
| GGGTAATCAAGGAGGTCACG+AGG | 0.668890 | 4_4:+74656015 | Msa0702840:CDS |
| TGAAAGAACAAACGGCAGAG+TGG | 0.682661 | 4_4:+74656927 | Msa0702840:CDS |
| ACAAAGAGAATACAACACAT+GGG | 0.710335 | 4_4:+74655933 | Msa0702840:CDS |
| CGTGTGTTTAGAGAGAGAAG+GGG | 0.712848 | 4_4:+74654751 | Msa0702840:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATAAAATGTAATCTGTT+GGG | + | chr4_4:74656258-74656277 | Msa0702840:intron | 15.0% |
| !! | AAATGCATTATAATAAACAT+CGG | - | chr4_4:74657187-74657206 | None:intergenic | 15.0% |
| !! | AATTGACGTAATTAGTAATA+TGG | + | chr4_4:74655192-74655211 | Msa0702840:intron | 20.0% |
| !! | ATCCAAAAACAAAACAAAAT+AGG | - | chr4_4:74655450-74655469 | None:intergenic | 20.0% |
| !!! | CATTGTTATATGTCTATTTT+TGG | + | chr4_4:74655494-74655513 | Msa0702840:intron | 20.0% |
| !!! | CTGATAACTATTTGTTAAAA+TGG | + | chr4_4:74655853-74655872 | Msa0702840:intron | 20.0% |
| !!! | TAACTTGTAATGTTTTCTTT+AGG | + | chr4_4:74655880-74655899 | Msa0702840:intron | 20.0% |
| !! | CATTATAAAATGTAATCTGT+TGG | + | chr4_4:74656257-74656276 | Msa0702840:intron | 20.0% |
| !!! | TTGGAAAATATTTCTGTTTA+GGG | + | chr4_4:74656397-74656416 | Msa0702840:intron | 20.0% |
| !! | AGAGATATAGATTTAAATTC+AGG | - | chr4_4:74656634-74656653 | None:intergenic | 20.0% |
| ! | CCACGAAATTAAAATGAAAA+GGG | - | chr4_4:74655007-74655026 | None:intergenic | 25.0% |
| !!! | CCTTTTCATTTTAATTTCGT+GGG | + | chr4_4:74655005-74655024 | Msa0702840:intron | 25.0% |
| !!! | ATTTGTTGATGATCACAAAA+TGG | + | chr4_4:74655266-74655285 | Msa0702840:intron | 25.0% |
| ! | GTTGATCAACAAAAGAAATT+AGG | - | chr4_4:74655358-74655377 | None:intergenic | 25.0% |
| !!! | GACCTATTTTGTTTTGTTTT+TGG | + | chr4_4:74655445-74655464 | Msa0702840:intron | 25.0% |
| ! | TTTGGATATATTAATCGATG+AGG | + | chr4_4:74655463-74655482 | Msa0702840:intron | 25.0% |
| ! | TTGGATATATTAATCGATGA+GGG | + | chr4_4:74655464-74655483 | Msa0702840:intron | 25.0% |
| ! | ACAGAGTAAAGATCAATTTA+TGG | - | chr4_4:74655561-74655580 | None:intergenic | 25.0% |
| !!! | GTTCTTTTGATTGTAGAAAA+TGG | + | chr4_4:74655634-74655653 | Msa0702840:intron | 25.0% |
| ! | TTCAAATGAAAATGTCATAG+TGG | + | chr4_4:74655812-74655831 | Msa0702840:intron | 25.0% |
| ! | ATTAATTGTCAGCTATTGAA+AGG | - | chr4_4:74656145-74656164 | None:intergenic | 25.0% |
| ! | AAGTATGAAAGAATCCAAAT+CGG | - | chr4_4:74656302-74656321 | None:intergenic | 25.0% |
| !! | GTTGGAAAATATTTCTGTTT+AGG | + | chr4_4:74656396-74656415 | Msa0702840:intron | 25.0% |
| ! | ATGAATAATTGATTATGCTG+AGG | + | chr4_4:74656507-74656526 | Msa0702840:intron | 25.0% |
| ! | TATAGATTTAAATTCAGGTG+CGG | - | chr4_4:74656629-74656648 | None:intergenic | 25.0% |
| ! | GTATCAATCACATATAGAAA+CGG | - | chr4_4:74656696-74656715 | None:intergenic | 25.0% |
| ! | AAGTGGTAACAAAAAAATTC+TGG | - | chr4_4:74657138-74657157 | None:intergenic | 25.0% |
| ATTCAGAATTTGGATCTGTT+GGG | - | chr4_4:74654702-74654721 | None:intergenic | 30.0% | |
| AATTCAGAATTTGGATCTGT+TGG | - | chr4_4:74654703-74654722 | None:intergenic | 30.0% | |
| TTCACACAGAATTCAGAATT+TGG | - | chr4_4:74654712-74654731 | None:intergenic | 30.0% | |
| !!! | CCCTTTTCATTTTAATTTCG+TGG | + | chr4_4:74655004-74655023 | Msa0702840:intron | 30.0% |
| CCCACGAAATTAAAATGAAA+AGG | - | chr4_4:74655008-74655027 | None:intergenic | 30.0% | |
| !! | TTCCATTGTTCTGATTTGTT+TGG | + | chr4_4:74655068-74655087 | Msa0702840:intron | 30.0% |
| AACCAAACAAATCAGAACAA+TGG | - | chr4_4:74655073-74655092 | None:intergenic | 30.0% | |
| !! | TTCTGATTTGTTTGGTTTCT+AGG | + | chr4_4:74655076-74655095 | Msa0702840:intron | 30.0% |
| !! | TCTGATTTGTTTGGTTTCTA+GGG | + | chr4_4:74655077-74655096 | Msa0702840:intron | 30.0% |
| ! | TTGACATTGTTCTTCTGTTT+TGG | + | chr4_4:74655112-74655131 | Msa0702840:intron | 30.0% |
| GACGTAATTAGTAATATGGA+TGG | + | chr4_4:74655196-74655215 | Msa0702840:intron | 30.0% | |
| ! | ATGCATTTTTATATTGTCCG+TGG | + | chr4_4:74655403-74655422 | Msa0702840:intron | 30.0% |
| TGATGAAGATTGTTTCCATA+TGG | - | chr4_4:74655914-74655933 | None:intergenic | 30.0% | |
| ACAAAGAGAATACAACACAT+GGG | + | chr4_4:74655933-74655952 | Msa0702840:CDS | 30.0% | |
| AAGATTGAGGTAAGTAGATA+TGG | + | chr4_4:74656106-74656125 | Msa0702840:intron | 30.0% | |
| AGCTGACAATTAATTACTCA+AGG | + | chr4_4:74656151-74656170 | Msa0702840:intron | 30.0% | |
| !!! | GTTCAAGCACTGTTTTAAAA+TGG | + | chr4_4:74656198-74656217 | Msa0702840:intron | 30.0% |
| AGATCCATCATTATTGATGT+CGG | - | chr4_4:74656365-74656384 | None:intergenic | 30.0% | |
| TGGATCTTCTTACTATATGT+TGG | + | chr4_4:74656378-74656397 | Msa0702840:intron | 30.0% | |
| ATGGTTTACTACATTTCTTG+AGG | - | chr4_4:74656537-74656556 | None:intergenic | 30.0% | |
| ! | ATAGTCTTGAGATGGAAAAA+TGG | - | chr4_4:74656556-74656575 | None:intergenic | 30.0% |
| ! | AAGTAACTATAGTCTTGAGA+TGG | - | chr4_4:74656564-74656583 | None:intergenic | 30.0% |
| TATATCTCTTCTGTTTGCTT+TGG | + | chr4_4:74656645-74656664 | Msa0702840:intron | 30.0% | |
| TCTATATGTGATTGATACCT+AGG | + | chr4_4:74656698-74656717 | Msa0702840:intron | 30.0% | |
| CTATATGTGATTGATACCTA+GGG | + | chr4_4:74656699-74656718 | Msa0702840:intron | 30.0% | |
| ! | ATAGAGCAAATTTTCATGGA+TGG | - | chr4_4:74656766-74656785 | None:intergenic | 30.0% |
| ! | TCAGATAGAGCAAATTTTCA+TGG | - | chr4_4:74656770-74656789 | None:intergenic | 30.0% |
| ! | TGAAAATTTGCTCTATCTGA+AGG | + | chr4_4:74656770-74656789 | Msa0702840:CDS | 30.0% |
| ! | GAAAATTTGCTCTATCTGAA+GGG | + | chr4_4:74656771-74656790 | Msa0702840:CDS | 30.0% |
| !!! | ATATTTTGTGCTGTTTGTTC+AGG | + | chr4_4:74656881-74656900 | Msa0702840:intron | 30.0% |
| !!! | TATTTTGTGCTGTTTGTTCA+GGG | + | chr4_4:74656882-74656901 | Msa0702840:intron | 30.0% |
| TGGTTTAGTATTATGTCGTT+AGG | + | chr4_4:74656952-74656971 | Msa0702840:CDS | 30.0% | |
| TCAGAAGAAGAAGCTTATAT+AGG | + | chr4_4:74657026-74657045 | Msa0702840:CDS | 30.0% | |
| AAAATTGGAAACTCTGTAAG+TGG | - | chr4_4:74657155-74657174 | None:intergenic | 30.0% | |
| CATCGGTAGATAAGAAAAAT+TGG | - | chr4_4:74657170-74657189 | None:intergenic | 30.0% | |
| GACGTTATTCTGGATTTCTT+CGG | - | chr4_4:74654891-74654910 | None:intergenic | 35.0% | |
| !!! | GTTCTTCTGTTTTGGTCAAT+TGG | + | chr4_4:74655120-74655139 | Msa0702840:intron | 35.0% |
| !!! | TTCTGTTTTGGTCAATTGGT+GGG | + | chr4_4:74655124-74655143 | Msa0702840:intron | 35.0% |
| ! | TTTTTATATTGTCCGTGGTG+TGG | + | chr4_4:74655408-74655427 | Msa0702840:intron | 35.0% |
| ACATGTGGATTCGATTTAGT+CGG | + | chr4_4:74655684-74655703 | Msa0702840:intron | 35.0% | |
| TACAAAAATGTCTTGCACGT+TGG | + | chr4_4:74655713-74655732 | Msa0702840:intron | 35.0% | |
| TCATGACTTTCAGATCGTAT+CGG | - | chr4_4:74655775-74655794 | None:intergenic | 35.0% | |
| CTTTAGGTAACATCACCATA+TGG | + | chr4_4:74655896-74655915 | Msa0702840:intron | 35.0% | |
| CACAAAGAGAATACAACACA+TGG | + | chr4_4:74655932-74655951 | Msa0702840:CDS | 35.0% | |
| ! | CAATTCCAATTTTCCAGTCA+AGG | - | chr4_4:74656051-74656070 | None:intergenic | 35.0% |
| GCAAGAAAATTGATCCGATT+TGG | + | chr4_4:74656285-74656304 | Msa0702840:intron | 35.0% | |
| GATCCATCATTATTGATGTC+GGG | - | chr4_4:74656364-74656383 | None:intergenic | 35.0% | |
| TTTCATGTTACACGAGAGAA+TGG | - | chr4_4:74656592-74656611 | None:intergenic | 35.0% | |
| TCTCGTGTAACATGAAAGTA+AGG | + | chr4_4:74656595-74656614 | Msa0702840:intron | 35.0% | |
| ATCGTGAGTGAAAGAACAAA+CGG | + | chr4_4:74656919-74656938 | Msa0702840:CDS | 35.0% | |
| GGTAACAAAAAAATTCTGGC+TGG | - | chr4_4:74657134-74657153 | None:intergenic | 35.0% | |
| ! | TGGTTGATTGATTGGTAGCT+AGG | - | chr4_4:74654677-74654696 | None:intergenic | 40.0% |
| GTTGGGTATGGTTGATTGAT+TGG | - | chr4_4:74654685-74654704 | None:intergenic | 40.0% | |
| GAATTTGGATCTGTTGGGTA+TGG | - | chr4_4:74654697-74654716 | None:intergenic | 40.0% | |
| GATTGATTGAGAAGATGCAG+AGG | - | chr4_4:74654808-74654827 | None:intergenic | 40.0% | |
| !!! | CTTCTGTTTTGGTCAATTGG+TGG | + | chr4_4:74655123-74655142 | Msa0702840:intron | 40.0% |
| ! | TGTCCAGTTCTGTCTTTTGA+GGG | + | chr4_4:74655590-74655609 | Msa0702840:intron | 40.0% |
| ATATACCGCTCACATACATG+TGG | + | chr4_4:74655669-74655688 | Msa0702840:intron | 40.0% | |
| CATTTACGACTCAAGAGACT+GGG | + | chr4_4:74655963-74655982 | Msa0702840:CDS | 40.0% | |
| GTGAACCTTGACTGGAAAAT+TGG | + | chr4_4:74656043-74656062 | Msa0702840:CDS | 40.0% | |
| GAAAATTGGAATTGCAGCCA+AGG | + | chr4_4:74656057-74656076 | Msa0702840:CDS | 40.0% | |
| TGCTAAGAAGGAGAAGATTG+AGG | + | chr4_4:74656093-74656112 | Msa0702840:CDS | 40.0% | |
| GTACCCGACATCAATAATGA+TGG | + | chr4_4:74656358-74656377 | Msa0702840:intron | 40.0% | |
| ATTTGCTCTATCTGAAGGGA+AGG | + | chr4_4:74656775-74656794 | Msa0702840:CDS | 40.0% | |
| CTAGAAGTTGTTGACGTGAT+TGG | - | chr4_4:74656809-74656828 | None:intergenic | 40.0% | |
| ATGTCGTTAGGTATCTGCAT+TGG | + | chr4_4:74656964-74656983 | Msa0702840:CDS | 40.0% | |
| TGCGTGTGTTTAGAGAGAGA+AGG | + | chr4_4:74654749-74654768 | Msa0702840:five_prime_UTR | 45.0% | |
| GCGTGTGTTTAGAGAGAGAA+GGG | + | chr4_4:74654750-74654769 | Msa0702840:five_prime_UTR | 45.0% | |
| CGTGTGTTTAGAGAGAGAAG+GGG | + | chr4_4:74654751-74654770 | Msa0702840:five_prime_UTR | 45.0% | |
| TTTAGAGAGAGAAGGGGCTA+TGG | + | chr4_4:74654757-74654776 | Msa0702840:exon | 45.0% | |
| GATTTCTTCGGAGACGCATT+TGG | - | chr4_4:74654879-74654898 | None:intergenic | 45.0% | |
| CCAAAACGACGACGTTATTC+TGG | - | chr4_4:74654901-74654920 | None:intergenic | 45.0% | |
| ! | CCAGAATAACGTCGTCGTTT+TGG | + | chr4_4:74654898-74654917 | Msa0702840:CDS | 45.0% |
| ATTACCTTGACAGCGAGAGT+GGG | - | chr4_4:74654962-74654981 | None:intergenic | 45.0% | |
| AGTACTATGACACCACACCA+CGG | - | chr4_4:74655423-74655442 | None:intergenic | 45.0% | |
| ! | CTGTCCAGTTCTGTCTTTTG+AGG | + | chr4_4:74655589-74655608 | Msa0702840:intron | 45.0% |
| ! | GTCCAGTTCTGTCTTTTGAG+GGG | + | chr4_4:74655591-74655610 | Msa0702840:intron | 45.0% |
| ATCCCCTCAAAAGACAGAAC+TGG | - | chr4_4:74655596-74655615 | None:intergenic | 45.0% | |
| CGAATCCACATGTATGTGAG+CGG | - | chr4_4:74655677-74655696 | None:intergenic | 45.0% | |
| TGTGGATTCGATTTAGTCGG+TGG | + | chr4_4:74655687-74655706 | Msa0702840:intron | 45.0% | |
| GCATTTACGACTCAAGAGAC+TGG | + | chr4_4:74655962-74655981 | Msa0702840:CDS | 45.0% | |
| ! | GAACTACCTGGCATGCTTTT+GGG | + | chr4_4:74655985-74656004 | Msa0702840:CDS | 45.0% |
| !! | TGGCATGCTTTTGGGTAGAT+GGG | + | chr4_4:74655993-74656012 | Msa0702840:CDS | 45.0% |
| AGGTTAGTGTGAACCTTGAC+TGG | + | chr4_4:74656035-74656054 | Msa0702840:CDS | 45.0% | |
| TTGGAATTGCAGCCAAGGAT+TGG | + | chr4_4:74656062-74656081 | Msa0702840:CDS | 45.0% | |
| TGGAATTGCAGCCAAGGATT+GGG | + | chr4_4:74656063-74656082 | Msa0702840:CDS | 45.0% | |
| TTGGGACTCAGTTGCTAAGA+AGG | + | chr4_4:74656081-74656100 | Msa0702840:CDS | 45.0% | |
| CTTGAGCTGAGAAAGCTAGA+AGG | + | chr4_4:74656729-74656748 | Msa0702840:CDS | 45.0% | |
| AAAGCTAGAAGGAGCTGTAG+AGG | + | chr4_4:74656740-74656759 | Msa0702840:CDS | 45.0% | |
| TGAAAGAACAAACGGCAGAG+TGG | + | chr4_4:74656927-74656946 | Msa0702840:CDS | 45.0% | |
| GAGTCTCAGCTTTGCAATTG+TGG | + | chr4_4:74656986-74657005 | Msa0702840:CDS | 45.0% | |
| TCTGGCTGGTACTTGTAAGT+AGG | - | chr4_4:74657120-74657139 | None:intergenic | 45.0% | |
| TACCTTCCACACTCGCTATC+TGG | + | chr4_4:74654831-74654850 | Msa0702840:CDS | 50.0% | |
| TTCGGAGACGCATTTGGTAC+CGG | - | chr4_4:74654873-74654892 | None:intergenic | 50.0% | |
| GGACTACGGGTATGATCATC+GGG | - | chr4_4:74654941-74654960 | None:intergenic | 50.0% | |
| GGGACTACGGGTATGATCAT+CGG | - | chr4_4:74654942-74654961 | None:intergenic | 50.0% | |
| CATTACCTTGACAGCGAGAG+TGG | - | chr4_4:74654963-74654982 | None:intergenic | 50.0% | |
| AGATCAAACCTACGCTGCTC+AGG | - | chr4_4:74655522-74655541 | None:intergenic | 50.0% | |
| TCAAGAGACTGGGAACTACC+TGG | + | chr4_4:74655973-74655992 | Msa0702840:CDS | 50.0% | |
| ! | GGAACTACCTGGCATGCTTT+TGG | + | chr4_4:74655984-74656003 | Msa0702840:CDS | 50.0% |
| ! | CATCTACCCAAAAGCATGCC+AGG | - | chr4_4:74655994-74656013 | None:intergenic | 50.0% |
| !! | CTGGCATGCTTTTGGGTAGA+TGG | + | chr4_4:74655992-74656011 | Msa0702840:CDS | 50.0% |
| !! | GGCATGCTTTTGGGTAGATG+GGG | + | chr4_4:74655994-74656013 | Msa0702840:CDS | 50.0% |
| !! | GCATGCTTTTGGGTAGATGG+GGG | + | chr4_4:74655995-74656014 | Msa0702840:CDS | 50.0% |
| TGGGTAGATGGGGGTAATCA+AGG | + | chr4_4:74656004-74656023 | Msa0702840:CDS | 50.0% | |
| GTAGATGGGGGTAATCAAGG+AGG | + | chr4_4:74656007-74656026 | Msa0702840:CDS | 50.0% | |
| AGCAACTGAGTCCCAATCCT+TGG | - | chr4_4:74656077-74656096 | None:intergenic | 50.0% | |
| TGTTCAGGGAAGCAGAGATG+AGG | + | chr4_4:74656896-74656915 | Msa0702840:intron | 50.0% | |
| AGCCAGATAGCGAGTGTGGA+AGG | - | chr4_4:74654836-74654855 | None:intergenic | 55.0% | |
| CGTAAGCCAGATAGCGAGTG+TGG | - | chr4_4:74654840-74654859 | None:intergenic | 55.0% | |
| TGGCTTACGTTACCCACCAC+CGG | + | chr4_4:74654851-74654870 | Msa0702840:CDS | 55.0% | |
| !! | ACGCATTTGGTACCGGTGGT+GGG | - | chr4_4:74654866-74654885 | None:intergenic | 55.0% |
| TGACAGCGAGAGTGGGACTA+CGG | - | chr4_4:74654955-74654974 | None:intergenic | 55.0% | |
| TAGTCCCACTCTCGCTGTCA+AGG | + | chr4_4:74654955-74654974 | Msa0702840:CDS | 55.0% | |
| !!! | TTTTGGAGCCTGAGCAGCGT+AGG | + | chr4_4:74655511-74655530 | Msa0702840:intron | 55.0% |
| GGGTAATCAAGGAGGTCACG+AGG | + | chr4_4:74656015-74656034 | Msa0702840:CDS | 55.0% | |
| CAGCTCAAGCTCAACTCCCT+AGG | - | chr4_4:74656718-74656737 | None:intergenic | 55.0% | |
| GAACAAACGGCAGAGTGGCA+TGG | + | chr4_4:74656932-74656951 | Msa0702840:CDS | 55.0% | |
| !! | GACGCATTTGGTACCGGTGG+TGG | - | chr4_4:74654867-74654886 | None:intergenic | 60.0% |
| ! | GGAGACGCATTTGGTACCGG+TGG | - | chr4_4:74654870-74654889 | None:intergenic | 60.0% |
| GACAGCGAGAGTGGGACTAC+GGG | - | chr4_4:74654954-74654973 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 74654641 | 74657332 | 74654641 | ID=Msa0702840;Name=Msa0702840 |
| chr4_4 | mRNA | 74654641 | 74657332 | 74654641 | ID=Msa0702840-mRNA-1;Parent=Msa0702840;Name=Msa0702840-mRNA-1;_AED=0.08;_eAED=0.08;_QI=135|1|1|1|1|1|4|285|211 |
| chr4_4 | exon | 74654641 | 74654976 | 74654641 | ID=Msa0702840-mRNA-1:exon:23277;Parent=Msa0702840-mRNA-1 |
| chr4_4 | exon | 74655902 | 74656114 | 74655902 | ID=Msa0702840-mRNA-1:exon:23278;Parent=Msa0702840-mRNA-1 |
| chr4_4 | exon | 74656720 | 74656796 | 74656720 | ID=Msa0702840-mRNA-1:exon:23279;Parent=Msa0702840-mRNA-1 |
| chr4_4 | exon | 74656903 | 74657332 | 74656903 | ID=Msa0702840-mRNA-1:exon:23280;Parent=Msa0702840-mRNA-1 |
| chr4_4 | five_prime_UTR | 74654641 | 74654775 | 74654641 | ID=Msa0702840-mRNA-1:five_prime_utr;Parent=Msa0702840-mRNA-1 |
| chr4_4 | CDS | 74654776 | 74654976 | 74654776 | ID=Msa0702840-mRNA-1:cds;Parent=Msa0702840-mRNA-1 |
| chr4_4 | CDS | 74655902 | 74656114 | 74655902 | ID=Msa0702840-mRNA-1:cds;Parent=Msa0702840-mRNA-1 |
| chr4_4 | CDS | 74656720 | 74656796 | 74656720 | ID=Msa0702840-mRNA-1:cds;Parent=Msa0702840-mRNA-1 |
| chr4_4 | CDS | 74656903 | 74657047 | 74656903 | ID=Msa0702840-mRNA-1:cds;Parent=Msa0702840-mRNA-1 |
| chr4_4 | three_prime_UTR | 74657048 | 74657332 | 74657048 | ID=Msa0702840-mRNA-1:three_prime_utr;Parent=Msa0702840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
