Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0702960 | XP_003630005.1 | 99.296 | 142 | 1 | 0 | 1 | 142 | 574 | 715 | 2.32e-90 | 291 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0702960 | sp|Q9SUN6|SBT22_ARATH | 75.352 | 142 | 35 | 0 | 1 | 142 | 577 | 718 | 1.42e-68 | 226 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0702960 | G7L9K7 | 99.296 | 142 | 1 | 0 | 1 | 142 | 574 | 715 | 1.11e-90 | 291 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0658120 | Msa0702960 | 0.804931 | 1.704839e-49 | -8.615850e-47 |
Msa0702960 | Msa0702970 | 0.812434 | 4.248235e-51 | -8.615850e-47 |
Msa0702960 | Msa1395050 | 0.815126 | 1.084789e-51 | -8.615850e-47 |
Msa0566460 | Msa0702960 | 0.803668 | 3.122785e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0702960 | MtrunA17_Chr8g0380961 | 99.296 | 142 | 1 | 0 | 1 | 142 | 574 | 715 | 2.13e-94 | 291 |
Msa0702960 | MtrunA17_Chr2g0302951 | 83.803 | 142 | 23 | 0 | 1 | 142 | 566 | 707 | 5.84e-78 | 248 |
Msa0702960 | MtrunA17_Chr4g0071871 | 58.993 | 139 | 57 | 0 | 3 | 141 | 545 | 683 | 2.22e-49 | 169 |
Msa0702960 | MtrunA17_Chr2g0298601 | 57.554 | 139 | 59 | 0 | 3 | 141 | 545 | 683 | 8.42e-45 | 157 |
Msa0702960 | MtrunA17_Chr4g0075331 | 50.360 | 139 | 66 | 2 | 3 | 141 | 471 | 606 | 7.17e-38 | 137 |
Msa0702960 | MtrunA17_Chr7g0269611 | 65.854 | 82 | 28 | 0 | 57 | 138 | 26 | 107 | 2.29e-30 | 106 |
Msa0702960 | MtrunA17_Chr1g0207741 | 65.854 | 82 | 28 | 0 | 57 | 138 | 26 | 107 | 2.84e-30 | 106 |
Msa0702960 | MtrunA17_Chr1g0204321 | 46.809 | 141 | 60 | 5 | 3 | 140 | 510 | 638 | 7.50e-28 | 108 |
Msa0702960 | MtrunA17_Chr8g0369891 | 46.043 | 139 | 56 | 4 | 3 | 141 | 501 | 620 | 1.11e-27 | 108 |
Msa0702960 | MtrunA17_Chr8g0344971 | 39.773 | 176 | 83 | 5 | 1 | 170 | 484 | 642 | 2.10e-27 | 107 |
Msa0702960 | MtrunA17_Chr4g0037221 | 44.521 | 146 | 64 | 4 | 3 | 144 | 495 | 627 | 5.07e-27 | 106 |
Msa0702960 | MtrunA17_Chr5g0407701 | 46.763 | 139 | 57 | 5 | 3 | 141 | 496 | 617 | 1.55e-26 | 105 |
Msa0702960 | MtrunA17_Chr7g0250391 | 41.317 | 167 | 80 | 4 | 3 | 165 | 519 | 671 | 1.70e-26 | 104 |
Msa0702960 | MtrunA17_Chr7g0262161 | 40.719 | 167 | 80 | 4 | 3 | 166 | 488 | 638 | 2.13e-26 | 104 |
Msa0702960 | MtrunA17_Chr7g0261701 | 39.412 | 170 | 83 | 6 | 3 | 168 | 32 | 185 | 4.28e-26 | 100 |
Msa0702960 | MtrunA17_Chr1g0189561 | 43.243 | 148 | 63 | 5 | 2 | 142 | 488 | 621 | 6.17e-26 | 103 |
Msa0702960 | MtrunA17_Chr4g0057461 | 42.553 | 141 | 65 | 3 | 3 | 140 | 364 | 491 | 8.89e-26 | 102 |
Msa0702960 | MtrunA17_Chr7g0250371 | 41.071 | 168 | 81 | 5 | 3 | 166 | 521 | 674 | 1.72e-25 | 102 |
Msa0702960 | MtrunA17_Chr4g0026641 | 45.600 | 125 | 60 | 2 | 19 | 142 | 504 | 621 | 2.60e-25 | 101 |
Msa0702960 | MtrunA17_Chr4g0076611 | 37.870 | 169 | 87 | 4 | 3 | 168 | 436 | 589 | 2.68e-25 | 101 |
Msa0702960 | MtrunA17_Chr1g0152771 | 43.972 | 141 | 64 | 4 | 3 | 140 | 485 | 613 | 6.44e-25 | 100 |
Msa0702960 | MtrunA17_Chr7g0248871 | 42.759 | 145 | 68 | 5 | 2 | 142 | 494 | 627 | 7.90e-25 | 100 |
Msa0702960 | MtrunA17_Chr4g0053781 | 44.681 | 141 | 63 | 4 | 3 | 140 | 487 | 615 | 8.03e-25 | 100 |
Msa0702960 | MtrunA17_Chr1g0189251 | 39.521 | 167 | 84 | 5 | 3 | 166 | 486 | 638 | 9.56e-25 | 99.8 |
Msa0702960 | MtrunA17_Chr5g0398351 | 42.857 | 140 | 63 | 4 | 1 | 140 | 473 | 595 | 1.41e-24 | 99.4 |
Msa0702960 | MtrunA17_Chr5g0398351 | 42.029 | 138 | 63 | 4 | 3 | 140 | 1246 | 1366 | 2.71e-22 | 92.8 |
Msa0702960 | MtrunA17_Chr8g0345971 | 39.521 | 167 | 85 | 5 | 3 | 166 | 490 | 643 | 1.60e-24 | 99.4 |
Msa0702960 | MtrunA17_Chr4g0026661 | 42.748 | 131 | 66 | 3 | 21 | 149 | 12 | 135 | 1.60e-24 | 95.9 |
Msa0702960 | MtrunA17_Chr7g0250481 | 41.139 | 158 | 76 | 4 | 3 | 155 | 534 | 679 | 3.72e-24 | 98.2 |
Msa0702960 | MtrunA17_Chr5g0401511 | 45.775 | 142 | 60 | 5 | 3 | 140 | 493 | 621 | 4.31e-24 | 97.8 |
Msa0702960 | MtrunA17_Chr7g0250441 | 35.519 | 183 | 87 | 5 | 3 | 166 | 19 | 189 | 6.79e-24 | 95.1 |
Msa0702960 | MtrunA17_Chr7g0250331 | 43.056 | 144 | 66 | 4 | 3 | 142 | 542 | 673 | 8.89e-24 | 97.1 |
Msa0702960 | MtrunA17_Chr8g0354741 | 38.462 | 169 | 84 | 6 | 3 | 168 | 371 | 522 | 1.07e-23 | 96.7 |
Msa0702960 | MtrunA17_Chr8g0344331 | 41.135 | 141 | 68 | 3 | 3 | 140 | 505 | 633 | 1.22e-23 | 96.7 |
Msa0702960 | MtrunA17_Chr4g0057531 | 41.844 | 141 | 66 | 4 | 3 | 140 | 513 | 640 | 1.53e-23 | 96.3 |
Msa0702960 | MtrunA17_Chr8g0345991 | 40.141 | 142 | 71 | 4 | 2 | 140 | 484 | 614 | 1.94e-23 | 96.3 |
Msa0702960 | MtrunA17_Chr2g0300751 | 41.259 | 143 | 69 | 3 | 3 | 142 | 505 | 635 | 2.60e-23 | 95.9 |
Msa0702960 | MtrunA17_Chr5g0398241 | 43.478 | 138 | 61 | 4 | 3 | 140 | 495 | 615 | 2.67e-23 | 95.5 |
Msa0702960 | MtrunA17_Chr5g0398401 | 43.478 | 138 | 61 | 4 | 3 | 140 | 495 | 615 | 2.83e-23 | 95.5 |
Msa0702960 | MtrunA17_Chr4g0070391 | 37.736 | 159 | 77 | 4 | 3 | 151 | 484 | 630 | 3.88e-23 | 95.1 |
Msa0702960 | MtrunA17_Chr7g0246461 | 37.714 | 175 | 82 | 6 | 3 | 168 | 470 | 626 | 6.09e-23 | 94.7 |
Msa0702960 | MtrunA17_Chr2g0303881 | 40.141 | 142 | 70 | 5 | 2 | 140 | 458 | 587 | 6.32e-23 | 94.7 |
Msa0702960 | MtrunA17_Chr4g0020651 | 44.366 | 142 | 62 | 5 | 3 | 140 | 489 | 617 | 8.25e-23 | 94.4 |
Msa0702960 | MtrunA17_Chr7g0250411 | 34.973 | 183 | 88 | 5 | 3 | 166 | 520 | 690 | 9.08e-23 | 94.4 |
Msa0702960 | MtrunA17_Chr2g0285121 | 40.278 | 144 | 69 | 3 | 3 | 142 | 519 | 649 | 9.59e-23 | 94.0 |
Msa0702960 | MtrunA17_Chr5g0398331 | 41.727 | 139 | 64 | 4 | 2 | 140 | 491 | 612 | 1.17e-22 | 94.0 |
Msa0702960 | MtrunA17_Chr3g0134621 | 41.611 | 149 | 60 | 5 | 3 | 142 | 462 | 592 | 2.24e-22 | 93.2 |
Msa0702960 | MtrunA17_Chr6g0470851 | 39.521 | 167 | 75 | 6 | 3 | 163 | 469 | 615 | 2.26e-22 | 93.2 |
Msa0702960 | MtrunA17_Chr7g0276151 | 41.379 | 145 | 70 | 4 | 3 | 143 | 486 | 619 | 2.92e-22 | 92.8 |
Msa0702960 | MtrunA17_Chr8g0345981 | 38.732 | 142 | 73 | 4 | 2 | 140 | 488 | 618 | 3.31e-22 | 92.4 |
Msa0702960 | MtrunA17_Chr2g0285111 | 39.310 | 145 | 69 | 4 | 3 | 142 | 522 | 652 | 6.29e-22 | 91.7 |
Msa0702960 | MtrunA17_Chr3g0120521 | 36.170 | 141 | 74 | 4 | 3 | 140 | 509 | 636 | 7.83e-22 | 91.7 |
Msa0702960 | MtrunA17_Chr5g0398311 | 40.580 | 138 | 65 | 4 | 3 | 140 | 488 | 608 | 9.35e-22 | 91.3 |
Msa0702960 | MtrunA17_Chr5g0439271 | 37.278 | 169 | 79 | 5 | 3 | 157 | 340 | 495 | 1.78e-21 | 90.5 |
Msa0702960 | MtrunA17_Chr4g0057491 | 41.549 | 142 | 65 | 4 | 3 | 140 | 358 | 485 | 1.91e-21 | 90.5 |
Msa0702960 | MtrunA17_Chr6g0470881 | 38.824 | 170 | 75 | 7 | 3 | 166 | 469 | 615 | 1.99e-21 | 90.1 |
Msa0702960 | MtrunA17_Chr5g0423261 | 38.788 | 165 | 81 | 5 | 3 | 163 | 358 | 506 | 2.95e-21 | 89.7 |
Msa0702960 | MtrunA17_Chr8g0354771 | 38.596 | 171 | 80 | 7 | 3 | 166 | 498 | 650 | 3.52e-21 | 89.7 |
Msa0702960 | MtrunA17_Chr4g0057481 | 38.415 | 164 | 83 | 4 | 3 | 163 | 426 | 574 | 4.19e-21 | 89.4 |
Msa0702960 | MtrunA17_Chr3g0136151 | 35.088 | 171 | 90 | 6 | 3 | 169 | 493 | 646 | 7.67e-21 | 88.6 |
Msa0702960 | MtrunA17_Chr4g0057511 | 39.716 | 141 | 69 | 3 | 3 | 140 | 352 | 479 | 1.09e-20 | 88.2 |
Msa0702960 | MtrunA17_Chr8g0377961 | 42.029 | 138 | 64 | 3 | 3 | 140 | 518 | 639 | 1.60e-20 | 87.8 |
Msa0702960 | MtrunA17_Chr3g0105451 | 37.126 | 167 | 80 | 5 | 3 | 169 | 22 | 163 | 2.99e-20 | 85.1 |
Msa0702960 | MtrunA17_Chr8g0351011 | 38.854 | 157 | 71 | 6 | 3 | 155 | 492 | 627 | 3.10e-20 | 87.0 |
Msa0702960 | MtrunA17_Chr3g0143251 | 36.047 | 172 | 89 | 6 | 2 | 169 | 496 | 650 | 3.14e-20 | 87.0 |
Msa0702960 | MtrunA17_Chr7g0248861 | 41.304 | 138 | 66 | 5 | 2 | 135 | 496 | 622 | 4.78e-20 | 86.3 |
Msa0702960 | MtrunA17_Chr4g0057061 | 41.304 | 138 | 67 | 4 | 3 | 140 | 515 | 638 | 5.55e-20 | 86.3 |
Msa0702960 | MtrunA17_Chr1g0146251 | 35.119 | 168 | 82 | 5 | 3 | 166 | 476 | 620 | 5.77e-20 | 86.3 |
Msa0702960 | MtrunA17_Chr4g0057471 | 41.135 | 141 | 67 | 4 | 3 | 140 | 445 | 572 | 1.52e-19 | 84.7 |
Msa0702960 | MtrunA17_Chr8g0345961 | 39.024 | 123 | 67 | 2 | 20 | 140 | 501 | 617 | 1.81e-19 | 84.7 |
Msa0702960 | MtrunA17_Chr1g0170081 | 35.625 | 160 | 73 | 6 | 3 | 155 | 472 | 608 | 2.20e-19 | 84.3 |
Msa0702960 | MtrunA17_Chr8g0334521 | 37.580 | 157 | 74 | 5 | 3 | 155 | 474 | 610 | 6.79e-19 | 83.2 |
Msa0702960 | MtrunA17_Chr3g0079971 | 38.182 | 165 | 77 | 7 | 4 | 166 | 473 | 614 | 1.07e-18 | 82.4 |
Msa0702960 | MtrunA17_Chr8g0334491 | 34.756 | 164 | 79 | 5 | 1 | 163 | 474 | 610 | 1.26e-18 | 82.4 |
Msa0702960 | MtrunA17_Chr1g0146271 | 35.838 | 173 | 74 | 8 | 3 | 166 | 474 | 618 | 2.12e-18 | 81.6 |
Msa0702960 | MtrunA17_Chr6g0480721 | 39.310 | 145 | 62 | 5 | 3 | 143 | 343 | 465 | 2.69e-18 | 81.3 |
Msa0702960 | MtrunA17_Chr7g0246451 | 39.007 | 141 | 62 | 5 | 3 | 140 | 485 | 604 | 9.43e-18 | 79.7 |
Msa0702960 | MtrunA17_Chr7g0227991 | 33.929 | 168 | 84 | 5 | 3 | 166 | 474 | 618 | 1.14e-17 | 79.3 |
Msa0702960 | MtrunA17_Chr8g0346361 | 36.306 | 157 | 76 | 5 | 3 | 155 | 237 | 373 | 6.02e-17 | 77.4 |
Msa0702960 | MtrunA17_Chr5g0447171 | 34.104 | 173 | 68 | 6 | 3 | 140 | 210 | 371 | 1.08e-15 | 73.6 |
Msa0702960 | MtrunA17_Chr7g0266051 | 39.716 | 141 | 60 | 5 | 3 | 140 | 445 | 563 | 4.27e-15 | 72.0 |
Msa0702960 | MtrunA17_Chr4g0071191 | 36.552 | 145 | 66 | 5 | 3 | 143 | 63 | 185 | 8.82e-15 | 69.7 |
Msa0702960 | MtrunA17_Chr5g0418921 | 37.879 | 132 | 68 | 6 | 3 | 131 | 19 | 139 | 1.33e-14 | 68.2 |
Msa0702960 | MtrunA17_Chr4g0035881 | 46.316 | 95 | 39 | 3 | 3 | 90 | 228 | 317 | 3.91e-14 | 68.6 |
Msa0702960 | MtrunA17_Chr2g0301011 | 32.335 | 167 | 89 | 5 | 3 | 165 | 338 | 484 | 4.86e-14 | 68.9 |
Msa0702960 | MtrunA17_Chr2g0301031 | 34.014 | 147 | 78 | 5 | 21 | 163 | 1 | 132 | 7.64e-14 | 67.0 |
Msa0702960 | MtrunA17_Chr2g0312861 | 34.646 | 127 | 65 | 3 | 21 | 144 | 1 | 112 | 1.79e-13 | 66.6 |
Msa0702960 | MtrunA17_Chr8g0376841 | 40.000 | 100 | 47 | 3 | 3 | 94 | 496 | 590 | 6.15e-13 | 65.9 |
Msa0702960 | MtrunA17_Chr5g0398341 | 42.683 | 82 | 39 | 1 | 59 | 140 | 1 | 74 | 7.25e-13 | 61.6 |
Msa0702960 | MtrunA17_Chr3g0097061 | 32.738 | 168 | 84 | 7 | 10 | 166 | 281 | 430 | 5.17e-11 | 60.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0702960 | AT4G20430.2 | 75.352 | 142 | 35 | 0 | 1 | 142 | 553 | 694 | 1.37e-69 | 225 |
Msa0702960 | AT4G20430.3 | 75.352 | 142 | 35 | 0 | 1 | 142 | 577 | 718 | 1.44e-69 | 226 |
Msa0702960 | AT4G20430.1 | 75.352 | 142 | 35 | 0 | 1 | 142 | 577 | 718 | 1.44e-69 | 226 |
Msa0702960 | AT5G44530.2 | 66.871 | 163 | 53 | 1 | 1 | 163 | 562 | 723 | 2.97e-65 | 214 |
Msa0702960 | AT5G44530.1 | 72.535 | 142 | 39 | 0 | 1 | 142 | 562 | 703 | 2.22e-64 | 211 |
Msa0702960 | AT1G30600.1 | 70.714 | 140 | 41 | 0 | 1 | 140 | 552 | 691 | 6.92e-64 | 210 |
Msa0702960 | AT4G30020.3 | 56.115 | 139 | 61 | 0 | 3 | 141 | 542 | 680 | 2.34e-48 | 167 |
Msa0702960 | AT4G30020.1 | 56.115 | 139 | 61 | 0 | 3 | 141 | 542 | 680 | 2.34e-48 | 167 |
Msa0702960 | AT4G30020.4 | 56.115 | 139 | 61 | 0 | 3 | 141 | 542 | 680 | 2.34e-48 | 167 |
Msa0702960 | AT4G30020.2 | 56.115 | 139 | 61 | 0 | 3 | 141 | 542 | 680 | 2.34e-48 | 167 |
Msa0702960 | AT2G19170.1 | 54.676 | 139 | 63 | 0 | 3 | 141 | 541 | 679 | 1.76e-45 | 159 |
Msa0702960 | AT2G19170.2 | 54.676 | 139 | 63 | 0 | 3 | 141 | 541 | 679 | 1.76e-45 | 159 |
Msa0702960 | AT1G62340.1 | 46.377 | 138 | 69 | 2 | 3 | 139 | 563 | 696 | 5.40e-30 | 115 |
Msa0702960 | AT3G14240.1 | 41.954 | 174 | 78 | 5 | 3 | 170 | 496 | 652 | 7.67e-29 | 112 |
Msa0702960 | AT1G04110.1 | 45.833 | 144 | 55 | 5 | 3 | 140 | 499 | 625 | 3.49e-27 | 107 |
Msa0702960 | AT1G32970.1 | 47.826 | 138 | 57 | 3 | 3 | 140 | 466 | 588 | 1.00e-25 | 103 |
Msa0702960 | AT5G67360.1 | 44.444 | 144 | 59 | 4 | 3 | 140 | 489 | 617 | 1.19e-25 | 102 |
Msa0702960 | AT5G51750.1 | 41.667 | 144 | 63 | 4 | 3 | 140 | 507 | 635 | 4.20e-25 | 101 |
Msa0702960 | AT4G34980.1 | 39.884 | 173 | 79 | 6 | 3 | 168 | 485 | 639 | 4.48e-25 | 101 |
Msa0702960 | AT5G67090.1 | 40.116 | 172 | 66 | 6 | 3 | 164 | 476 | 620 | 6.87e-25 | 100 |
Msa0702960 | AT4G21630.1 | 42.331 | 163 | 77 | 5 | 3 | 165 | 496 | 641 | 8.83e-24 | 97.4 |
Msa0702960 | AT1G66210.1 | 39.264 | 163 | 77 | 4 | 3 | 165 | 498 | 638 | 3.16e-23 | 95.9 |
Msa0702960 | AT1G20160.2 | 39.752 | 161 | 75 | 7 | 2 | 156 | 454 | 598 | 3.45e-23 | 95.9 |
Msa0702960 | AT1G20160.1 | 39.752 | 161 | 75 | 7 | 2 | 156 | 493 | 637 | 3.66e-23 | 95.9 |
Msa0702960 | AT5G45650.2 | 40.000 | 170 | 77 | 5 | 3 | 168 | 525 | 673 | 3.71e-23 | 95.5 |
Msa0702960 | AT5G45650.1 | 40.000 | 170 | 77 | 5 | 3 | 168 | 525 | 673 | 3.71e-23 | 95.5 |
Msa0702960 | AT5G11940.1 | 39.881 | 168 | 80 | 6 | 3 | 168 | 494 | 642 | 8.87e-23 | 94.7 |
Msa0702960 | AT4G10520.1 | 43.478 | 138 | 63 | 3 | 3 | 140 | 488 | 610 | 2.41e-22 | 93.2 |
Msa0702960 | AT3G14067.1 | 42.553 | 141 | 66 | 4 | 3 | 140 | 493 | 621 | 2.55e-22 | 93.2 |
Msa0702960 | AT4G10510.1 | 43.478 | 138 | 63 | 3 | 3 | 140 | 497 | 619 | 2.82e-22 | 93.2 |
Msa0702960 | AT4G10510.2 | 43.478 | 138 | 63 | 3 | 3 | 140 | 438 | 560 | 2.86e-22 | 93.2 |
Msa0702960 | AT4G10510.3 | 43.478 | 138 | 63 | 3 | 3 | 140 | 509 | 631 | 2.94e-22 | 93.2 |
Msa0702960 | AT4G10510.4 | 43.478 | 138 | 63 | 3 | 3 | 140 | 453 | 575 | 3.14e-22 | 93.2 |
Msa0702960 | AT4G21640.1 | 40.491 | 163 | 80 | 5 | 3 | 165 | 470 | 615 | 5.67e-22 | 92.4 |
Msa0702960 | AT2G05920.1 | 37.349 | 166 | 73 | 6 | 3 | 153 | 483 | 632 | 1.26e-21 | 91.3 |
Msa0702960 | AT1G66220.1 | 36.196 | 163 | 80 | 4 | 3 | 165 | 495 | 633 | 1.83e-21 | 90.9 |
Msa0702960 | AT2G04160.1 | 37.086 | 151 | 82 | 3 | 19 | 166 | 519 | 659 | 1.85e-21 | 90.9 |
Msa0702960 | AT4G21650.1 | 38.037 | 163 | 84 | 4 | 3 | 165 | 503 | 648 | 2.18e-21 | 90.5 |
Msa0702960 | AT4G10550.4 | 40.000 | 170 | 82 | 6 | 3 | 170 | 455 | 606 | 4.62e-21 | 89.7 |
Msa0702960 | AT4G10550.2 | 40.000 | 170 | 82 | 6 | 3 | 170 | 455 | 606 | 4.62e-21 | 89.7 |
Msa0702960 | AT4G10550.3 | 40.000 | 170 | 82 | 6 | 3 | 170 | 527 | 678 | 5.32e-21 | 89.4 |
Msa0702960 | AT4G10550.1 | 40.000 | 170 | 82 | 6 | 3 | 170 | 511 | 662 | 5.46e-21 | 89.4 |
Msa0702960 | AT4G21326.1 | 37.952 | 166 | 82 | 5 | 3 | 166 | 431 | 577 | 1.04e-20 | 88.6 |
Msa0702960 | AT3G46850.1 | 44.056 | 143 | 61 | 6 | 3 | 144 | 476 | 600 | 2.13e-20 | 87.8 |
Msa0702960 | AT4G26330.2 | 39.161 | 143 | 72 | 4 | 2 | 141 | 452 | 582 | 2.23e-20 | 87.8 |
Msa0702960 | AT4G26330.1 | 39.161 | 143 | 72 | 4 | 2 | 141 | 466 | 596 | 2.37e-20 | 87.8 |
Msa0702960 | AT5G45640.1 | 41.549 | 142 | 65 | 4 | 10 | 142 | 484 | 616 | 6.16e-20 | 86.3 |
Msa0702960 | AT4G10540.1 | 42.029 | 138 | 65 | 3 | 3 | 140 | 507 | 629 | 7.30e-20 | 86.3 |
Msa0702960 | AT1G32960.1 | 36.686 | 169 | 90 | 4 | 3 | 171 | 509 | 660 | 2.34e-19 | 84.7 |
Msa0702960 | AT1G32980.1 | 43.363 | 113 | 56 | 2 | 53 | 165 | 1 | 105 | 4.74e-19 | 80.5 |
Msa0702960 | AT5G58840.1 | 38.621 | 145 | 67 | 3 | 3 | 144 | 446 | 571 | 6.16e-19 | 83.6 |
Msa0702960 | AT5G59090.1 | 39.161 | 143 | 67 | 3 | 3 | 144 | 468 | 591 | 6.89e-19 | 83.6 |
Msa0702960 | AT5G59090.3 | 39.161 | 143 | 67 | 3 | 3 | 144 | 466 | 589 | 7.16e-19 | 83.2 |
Msa0702960 | AT5G58830.1 | 36.552 | 145 | 70 | 3 | 3 | 144 | 445 | 570 | 1.38e-18 | 82.4 |
Msa0702960 | AT1G20150.1 | 32.584 | 178 | 85 | 5 | 3 | 169 | 498 | 651 | 1.40e-18 | 82.4 |
Msa0702960 | AT5G59090.2 | 39.161 | 143 | 62 | 4 | 3 | 144 | 468 | 586 | 3.43e-18 | 81.3 |
Msa0702960 | AT1G32950.1 | 37.647 | 170 | 87 | 5 | 3 | 171 | 505 | 656 | 3.74e-18 | 81.3 |
Msa0702960 | AT1G32950.2 | 37.278 | 169 | 89 | 4 | 3 | 171 | 454 | 605 | 4.24e-18 | 81.3 |
Msa0702960 | AT4G10530.1 | 48.889 | 90 | 40 | 1 | 51 | 140 | 518 | 601 | 4.39e-18 | 81.3 |
Msa0702960 | AT5G59120.1 | 39.161 | 143 | 67 | 3 | 3 | 144 | 467 | 590 | 4.68e-18 | 80.9 |
Msa0702960 | AT5G59810.1 | 38.732 | 142 | 69 | 5 | 3 | 140 | 514 | 641 | 5.67e-18 | 80.9 |
Msa0702960 | AT5G59100.1 | 39.310 | 145 | 66 | 4 | 3 | 144 | 475 | 600 | 6.82e-18 | 80.5 |
Msa0702960 | AT5G59190.1 | 39.161 | 143 | 61 | 5 | 3 | 140 | 430 | 551 | 7.78e-18 | 80.5 |
Msa0702960 | AT5G44530.3 | 71.429 | 49 | 14 | 0 | 1 | 49 | 562 | 610 | 1.51e-17 | 79.3 |
Msa0702960 | AT5G58820.1 | 36.986 | 146 | 68 | 4 | 3 | 144 | 442 | 567 | 1.55e-17 | 79.3 |
Msa0702960 | AT4G21323.1 | 35.714 | 168 | 86 | 6 | 4 | 169 | 537 | 684 | 6.82e-17 | 77.8 |
Msa0702960 | AT4G00230.1 | 38.732 | 142 | 61 | 6 | 3 | 140 | 483 | 602 | 1.04e-16 | 77.0 |
Msa0702960 | AT2G39850.1 | 37.671 | 146 | 61 | 6 | 2 | 141 | 493 | 614 | 2.76e-16 | 75.9 |
Msa0702960 | AT1G01900.1 | 37.671 | 146 | 73 | 5 | 3 | 142 | 499 | 632 | 5.41e-16 | 75.1 |
Msa0702960 | AT5G59130.1 | 38.194 | 144 | 70 | 3 | 1 | 144 | 462 | 586 | 6.95e-16 | 74.7 |
Msa0702960 | AT5G59130.2 | 38.194 | 144 | 70 | 3 | 1 | 144 | 456 | 580 | 7.07e-16 | 74.7 |
Msa0702960 | AT5G59130.4 | 38.194 | 144 | 70 | 3 | 1 | 144 | 466 | 590 | 7.96e-16 | 74.7 |
Msa0702960 | AT5G59130.3 | 38.194 | 144 | 70 | 3 | 1 | 144 | 427 | 551 | 8.68e-16 | 74.3 |
Msa0702960 | AT3G46840.1 | 39.860 | 143 | 67 | 6 | 3 | 144 | 476 | 600 | 1.20e-15 | 73.9 |
Msa0702960 | AT1G32940.1 | 44.203 | 138 | 62 | 4 | 3 | 140 | 506 | 628 | 5.32e-15 | 72.4 |
Msa0702960 | AT1G32940.4 | 44.203 | 138 | 62 | 4 | 3 | 140 | 455 | 577 | 5.74e-15 | 72.0 |
Msa0702960 | AT1G32940.2 | 44.203 | 138 | 62 | 4 | 3 | 140 | 455 | 577 | 5.74e-15 | 72.0 |
Msa0702960 | AT5G03620.1 | 40.426 | 141 | 59 | 4 | 3 | 140 | 490 | 608 | 6.96e-15 | 72.0 |
Msa0702960 | AT5G58840.3 | 43.119 | 109 | 43 | 4 | 3 | 108 | 446 | 538 | 2.08e-13 | 67.4 |
Msa0702960 | AT4G00230.2 | 43.011 | 93 | 43 | 3 | 3 | 91 | 483 | 569 | 1.12e-12 | 65.5 |
Msa0702960 | AT4G15040.2 | 36.752 | 117 | 56 | 2 | 50 | 166 | 472 | 570 | 2.98e-12 | 64.3 |
Msa0702960 | AT4G15040.1 | 36.752 | 117 | 56 | 2 | 50 | 166 | 472 | 570 | 2.98e-12 | 64.3 |
Msa0702960 | AT5G03620.2 | 46.739 | 92 | 41 | 2 | 3 | 91 | 490 | 576 | 3.15e-11 | 61.2 |
Find 46 sgRNAs with CRISPR-Local
Find 52 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACTGATTCAGATGAATTTCT+AGG | 0.215343 | 4_4:-74824592 | Msa0702960:intron |
CATTATATTTATAATGTCTA+TGG | 0.244975 | 4_4:-74824108 | Msa0702960:CDS |
TATGACCGCTGAGCCATTAT+TGG | 0.268058 | 4_4:+74824261 | None:intergenic |
AATGGCAGCAGGACTGAAAT+TGG | 0.269679 | 4_4:+74824332 | None:intergenic |
CTTCCAGGAGCGACCAGATT+TGG | 0.294597 | 4_4:+74824646 | None:intergenic |
TCGCTCCTGGAAGTTTAATA+TGG | 0.307253 | 4_4:-74824636 | Msa0702960:CDS |
GGAAGACTGTCCTCTGGATC+TGG | 0.353324 | 4_4:+74824691 | None:intergenic |
CCCATGTCAAAGGGAGTTGC+TGG | 0.353683 | 4_4:+74824213 | None:intergenic |
GTCCTCTGGATCTGGGCCTC+TGG | 0.364474 | 4_4:+74824699 | None:intergenic |
CAAAGGGAGTTGCTGGAGAT+TGG | 0.364867 | 4_4:+74824220 | None:intergenic |
GCAGCCCATATTAAACTTCC+AGG | 0.399428 | 4_4:+74824631 | None:intergenic |
ATGGCTGCACCTCATGTTGC+TGG | 0.403990 | 4_4:-74824384 | Msa0702960:CDS |
AAACCAAATCTGGTCGCTCC+TGG | 0.405433 | 4_4:-74824649 | Msa0702960:CDS |
TTCAACAACGGTTGCAGTAT+AGG | 0.405935 | 4_4:-74824064 | None:intergenic |
AATTTCAGTCCTGCTGCCAT+TGG | 0.419045 | 4_4:-74824330 | Msa0702960:CDS |
CAACAGTGGGAAGCCAATAA+TGG | 0.427981 | 4_4:-74824274 | Msa0702960:CDS |
CGCTCCTGGAAGTTTAATAT+GGG | 0.445698 | 4_4:-74824635 | Msa0702960:CDS |
GCTGGAGATTGGTTTAGCTC+TGG | 0.458495 | 4_4:+74824231 | None:intergenic |
GAAGACTGTCCTCTGGATCT+GGG | 0.474959 | 4_4:+74824692 | None:intergenic |
GAAGTTTAATATGGGCTGCT+TGG | 0.488618 | 4_4:-74824627 | Msa0702960:CDS |
ACTCCCTTTGACATGGGGAG+TGG | 0.495132 | 4_4:-74824207 | Msa0702960:CDS |
ATGGCAGCAGGACTGAAATT+GGG | 0.499760 | 4_4:+74824333 | None:intergenic |
GCTACTGCAGCATTAAATCC+AGG | 0.504364 | 4_4:-74824174 | Msa0702960:CDS |
CCAGCAACTCCCTTTGACAT+GGG | 0.510708 | 4_4:-74824213 | Msa0702960:CDS |
TCATGAGGAAGACTGTCCTC+TGG | 0.512742 | 4_4:+74824685 | None:intergenic |
AAACCACTCCCCATGTCAAA+GGG | 0.536442 | 4_4:+74824204 | None:intergenic |
AGCGCAGATCCAATGGCAGC+AGG | 0.536844 | 4_4:+74824321 | None:intergenic |
TCCAGCAACTCCCTTTGACA+TGG | 0.541263 | 4_4:-74824214 | Msa0702960:CDS |
AAAACCACTCCCCATGTCAA+AGG | 0.544182 | 4_4:+74824203 | None:intergenic |
TAGAAATTCATCTGAATCAG+TGG | 0.558632 | 4_4:+74824594 | None:intergenic |
GGTGGAAAGCGCAGATCCAA+TGG | 0.562075 | 4_4:+74824314 | None:intergenic |
AGATTGGTTTAGCTCTGGTG+AGG | 0.564989 | 4_4:+74824236 | None:intergenic |
TTCAAAATGTCAGCTTCATG+AGG | 0.570451 | 4_4:+74824670 | None:intergenic |
CGTCTCTGTATGACAACAGT+GGG | 0.595002 | 4_4:-74824287 | Msa0702960:CDS |
TGCCAGAGGCCCAGATCCAG+AGG | 0.601511 | 4_4:-74824701 | Msa0702960:CDS |
GATTGGTTTAGCTCTGGTGA+GGG | 0.606060 | 4_4:+74824237 | None:intergenic |
CTACTGCAGCATTAAATCCA+GGG | 0.610741 | 4_4:-74824173 | Msa0702960:CDS |
TATTTCAGAAATTTCAACAA+CGG | 0.611659 | 4_4:-74824076 | Msa0702960:CDS |
CAGCAACTCCCTTTGACATG+GGG | 0.612900 | 4_4:-74824212 | Msa0702960:CDS |
GCGGCAAGACCAGCAACATG+AGG | 0.671302 | 4_4:+74824375 | None:intergenic |
GTCATACAGAGACGCTGTGG+TGG | 0.681598 | 4_4:+74824296 | None:intergenic |
AATGATGTCTGGGACAAGCA+TGG | 0.682058 | 4_4:-74824403 | Msa0702960:CDS |
GTTATGTATTACTCTGCCAG+AGG | 0.695396 | 4_4:-74824715 | Msa0702960:CDS |
GCGTCTCTGTATGACAACAG+TGG | 0.697535 | 4_4:-74824288 | Msa0702960:CDS |
GGAAGCCAATAATGGCTCAG+CGG | 0.740103 | 4_4:-74824266 | Msa0702960:CDS |
GTTGTCATACAGAGACGCTG+TGG | 0.770578 | 4_4:+74824293 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TAAACAAACTTTTACTATAT+AGG | - | chr4_4:74824220-74824239 | Msa0702960:CDS | 15.0% |
!! | CATTATATTTATAATGTCTA+TGG | - | chr4_4:74824669-74824688 | Msa0702960:CDS | 15.0% |
!! | TATTTCAGAAATTTCAACAA+CGG | - | chr4_4:74824701-74824720 | Msa0702960:CDS | 20.0% |
!! | AAAATTTTGCAATGATGTCT+GGG | - | chr4_4:74824364-74824383 | Msa0702960:CDS | 25.0% |
!!! | TGACATTTTGAAACCAAATC+TGG | - | chr4_4:74824118-74824137 | Msa0702960:CDS | 30.0% |
TAGAAATTCATCTGAATCAG+TGG | + | chr4_4:74824186-74824205 | None:intergenic | 30.0% | |
! | ACTGATTCAGATGAATTTCT+AGG | - | chr4_4:74824185-74824204 | Msa0702960:CDS | 30.0% |
! | GATCTATATTTTCAACCAAC+AGG | - | chr4_4:74824339-74824358 | Msa0702960:CDS | 30.0% |
! | ATTGCAAAATTTTCACCTGT+TGG | + | chr4_4:74824357-74824376 | None:intergenic | 30.0% |
! | GAAAATTTTGCAATGATGTC+TGG | - | chr4_4:74824363-74824382 | Msa0702960:CDS | 30.0% |
! | AAACTTTTGCTTGATTAGTG+CGG | + | chr4_4:74824424-74824443 | None:intergenic | 30.0% |
TTCAAAATGTCAGCTTCATG+AGG | + | chr4_4:74824110-74824129 | None:intergenic | 35.0% | |
TCGCTCCTGGAAGTTTAATA+TGG | - | chr4_4:74824141-74824160 | Msa0702960:CDS | 40.0% | |
CGCTCCTGGAAGTTTAATAT+GGG | - | chr4_4:74824142-74824161 | Msa0702960:CDS | 40.0% | |
! | GAAGTTTAATATGGGCTGCT+TGG | - | chr4_4:74824150-74824169 | Msa0702960:CDS | 40.0% |
CTACTGCAGCATTAAATCCA+GGG | - | chr4_4:74824604-74824623 | Msa0702960:CDS | 40.0% | |
CTTGAATCAAAAAGCAACCC+TGG | + | chr4_4:74824624-74824643 | None:intergenic | 40.0% | |
GCAGCCCATATTAAACTTCC+AGG | + | chr4_4:74824149-74824168 | None:intergenic | 45.0% | |
! | AATGATGTCTGGGACAAGCA+TGG | - | chr4_4:74824374-74824393 | Msa0702960:CDS | 45.0% |
ATGGCAGCAGGACTGAAATT+GGG | + | chr4_4:74824447-74824466 | None:intergenic | 45.0% | |
AATGGCAGCAGGACTGAAAT+TGG | + | chr4_4:74824448-74824467 | None:intergenic | 45.0% | |
AATTTCAGTCCTGCTGCCAT+TGG | - | chr4_4:74824447-74824466 | Msa0702960:intron | 45.0% | |
CGTCTCTGTATGACAACAGT+GGG | - | chr4_4:74824490-74824509 | Msa0702960:intron | 45.0% | |
CAACAGTGGGAAGCCAATAA+TGG | - | chr4_4:74824503-74824522 | Msa0702960:intron | 45.0% | |
TATGACCGCTGAGCCATTAT+TGG | + | chr4_4:74824519-74824538 | None:intergenic | 45.0% | |
!! | GATTGGTTTAGCTCTGGTGA+GGG | + | chr4_4:74824543-74824562 | None:intergenic | 45.0% |
!! | AGATTGGTTTAGCTCTGGTG+AGG | + | chr4_4:74824544-74824563 | None:intergenic | 45.0% |
AAACCACTCCCCATGTCAAA+GGG | + | chr4_4:74824576-74824595 | None:intergenic | 45.0% | |
AAAACCACTCCCCATGTCAA+AGG | + | chr4_4:74824577-74824596 | None:intergenic | 45.0% | |
GCTACTGCAGCATTAAATCC+AGG | - | chr4_4:74824603-74824622 | Msa0702960:CDS | 45.0% | |
GAAGACTGTCCTCTGGATCT+GGG | + | chr4_4:74824088-74824107 | None:intergenic | 50.0% | |
TCATGAGGAAGACTGTCCTC+TGG | + | chr4_4:74824095-74824114 | None:intergenic | 50.0% | |
AAACCAAATCTGGTCGCTCC+TGG | - | chr4_4:74824128-74824147 | Msa0702960:CDS | 50.0% | |
GTTGTCATACAGAGACGCTG+TGG | + | chr4_4:74824487-74824506 | None:intergenic | 50.0% | |
GCGTCTCTGTATGACAACAG+TGG | - | chr4_4:74824489-74824508 | Msa0702960:intron | 50.0% | |
GGAAGCCAATAATGGCTCAG+CGG | - | chr4_4:74824511-74824530 | Msa0702960:intron | 50.0% | |
!! | GCTGGAGATTGGTTTAGCTC+TGG | + | chr4_4:74824549-74824568 | None:intergenic | 50.0% |
CAAAGGGAGTTGCTGGAGAT+TGG | + | chr4_4:74824560-74824579 | None:intergenic | 50.0% | |
TCCAGCAACTCCCTTTGACA+TGG | - | chr4_4:74824563-74824582 | Msa0702960:intron | 50.0% | |
CCAGCAACTCCCTTTGACAT+GGG | - | chr4_4:74824564-74824583 | Msa0702960:intron | 50.0% | |
CAGCAACTCCCTTTGACATG+GGG | - | chr4_4:74824565-74824584 | Msa0702960:intron | 50.0% | |
GGAAGACTGTCCTCTGGATC+TGG | + | chr4_4:74824089-74824108 | None:intergenic | 55.0% | |
CTTCCAGGAGCGACCAGATT+TGG | + | chr4_4:74824134-74824153 | None:intergenic | 55.0% | |
ATGGCTGCACCTCATGTTGC+TGG | - | chr4_4:74824393-74824412 | Msa0702960:CDS | 55.0% | |
! | GGTGGAAAGCGCAGATCCAA+TGG | + | chr4_4:74824466-74824485 | None:intergenic | 55.0% |
GTCATACAGAGACGCTGTGG+TGG | + | chr4_4:74824484-74824503 | None:intergenic | 55.0% | |
CCCATGTCAAAGGGAGTTGC+TGG | + | chr4_4:74824567-74824586 | None:intergenic | 55.0% | |
ACTCCCTTTGACATGGGGAG+TGG | - | chr4_4:74824570-74824589 | Msa0702960:intron | 55.0% | |
GCGGCAAGACCAGCAACATG+AGG | + | chr4_4:74824405-74824424 | None:intergenic | 60.0% | |
AGCGCAGATCCAATGGCAGC+AGG | + | chr4_4:74824459-74824478 | None:intergenic | 60.0% | |
TGCCAGAGGCCCAGATCCAG+AGG | - | chr4_4:74824076-74824095 | Msa0702960:CDS | 65.0% | |
GTCCTCTGGATCTGGGCCTC+TGG | + | chr4_4:74824081-74824100 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_4 | gene | 74824065 | 74824734 | 74824065 | ID=Msa0702960;Name=Msa0702960 |
chr4_4 | mRNA | 74824065 | 74824734 | 74824065 | ID=Msa0702960-mRNA-1;Parent=Msa0702960;Name=Msa0702960-mRNA-1;_AED=0.45;_eAED=0.45;_QI=0|0|0|1|1|1|2|0|171 |
chr4_4 | exon | 74824593 | 74824734 | 74824593 | ID=Msa0702960-mRNA-1:exon:23372;Parent=Msa0702960-mRNA-1 |
chr4_4 | exon | 74824065 | 74824438 | 74824065 | ID=Msa0702960-mRNA-1:exon:23371;Parent=Msa0702960-mRNA-1 |
chr4_4 | CDS | 74824593 | 74824734 | 74824593 | ID=Msa0702960-mRNA-1:cds;Parent=Msa0702960-mRNA-1 |
chr4_4 | CDS | 74824065 | 74824438 | 74824065 | ID=Msa0702960-mRNA-1:cds;Parent=Msa0702960-mRNA-1 |
Gene Sequence |
Protein sequence |