AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0702960


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0702960 MtrunA17_Chr8g0380961 99.296 142 1 0 1 142 574 715 2.13e-94 291
Msa0702960 MtrunA17_Chr2g0302951 83.803 142 23 0 1 142 566 707 5.84e-78 248
Msa0702960 MtrunA17_Chr4g0071871 58.993 139 57 0 3 141 545 683 2.22e-49 169
Msa0702960 MtrunA17_Chr2g0298601 57.554 139 59 0 3 141 545 683 8.42e-45 157
Msa0702960 MtrunA17_Chr4g0075331 50.360 139 66 2 3 141 471 606 7.17e-38 137
Msa0702960 MtrunA17_Chr7g0269611 65.854 82 28 0 57 138 26 107 2.29e-30 106
Msa0702960 MtrunA17_Chr1g0207741 65.854 82 28 0 57 138 26 107 2.84e-30 106
Msa0702960 MtrunA17_Chr1g0204321 46.809 141 60 5 3 140 510 638 7.50e-28 108
Msa0702960 MtrunA17_Chr8g0369891 46.043 139 56 4 3 141 501 620 1.11e-27 108
Msa0702960 MtrunA17_Chr8g0344971 39.773 176 83 5 1 170 484 642 2.10e-27 107
Msa0702960 MtrunA17_Chr4g0037221 44.521 146 64 4 3 144 495 627 5.07e-27 106
Msa0702960 MtrunA17_Chr5g0407701 46.763 139 57 5 3 141 496 617 1.55e-26 105
Msa0702960 MtrunA17_Chr7g0250391 41.317 167 80 4 3 165 519 671 1.70e-26 104
Msa0702960 MtrunA17_Chr7g0262161 40.719 167 80 4 3 166 488 638 2.13e-26 104
Msa0702960 MtrunA17_Chr7g0261701 39.412 170 83 6 3 168 32 185 4.28e-26 100
Msa0702960 MtrunA17_Chr1g0189561 43.243 148 63 5 2 142 488 621 6.17e-26 103
Msa0702960 MtrunA17_Chr4g0057461 42.553 141 65 3 3 140 364 491 8.89e-26 102
Msa0702960 MtrunA17_Chr7g0250371 41.071 168 81 5 3 166 521 674 1.72e-25 102
Msa0702960 MtrunA17_Chr4g0026641 45.600 125 60 2 19 142 504 621 2.60e-25 101
Msa0702960 MtrunA17_Chr4g0076611 37.870 169 87 4 3 168 436 589 2.68e-25 101
Msa0702960 MtrunA17_Chr1g0152771 43.972 141 64 4 3 140 485 613 6.44e-25 100
Msa0702960 MtrunA17_Chr7g0248871 42.759 145 68 5 2 142 494 627 7.90e-25 100
Msa0702960 MtrunA17_Chr4g0053781 44.681 141 63 4 3 140 487 615 8.03e-25 100
Msa0702960 MtrunA17_Chr1g0189251 39.521 167 84 5 3 166 486 638 9.56e-25 99.8
Msa0702960 MtrunA17_Chr5g0398351 42.857 140 63 4 1 140 473 595 1.41e-24 99.4
Msa0702960 MtrunA17_Chr5g0398351 42.029 138 63 4 3 140 1246 1366 2.71e-22 92.8
Msa0702960 MtrunA17_Chr8g0345971 39.521 167 85 5 3 166 490 643 1.60e-24 99.4
Msa0702960 MtrunA17_Chr4g0026661 42.748 131 66 3 21 149 12 135 1.60e-24 95.9
Msa0702960 MtrunA17_Chr7g0250481 41.139 158 76 4 3 155 534 679 3.72e-24 98.2
Msa0702960 MtrunA17_Chr5g0401511 45.775 142 60 5 3 140 493 621 4.31e-24 97.8
Msa0702960 MtrunA17_Chr7g0250441 35.519 183 87 5 3 166 19 189 6.79e-24 95.1
Msa0702960 MtrunA17_Chr7g0250331 43.056 144 66 4 3 142 542 673 8.89e-24 97.1
Msa0702960 MtrunA17_Chr8g0354741 38.462 169 84 6 3 168 371 522 1.07e-23 96.7
Msa0702960 MtrunA17_Chr8g0344331 41.135 141 68 3 3 140 505 633 1.22e-23 96.7
Msa0702960 MtrunA17_Chr4g0057531 41.844 141 66 4 3 140 513 640 1.53e-23 96.3
Msa0702960 MtrunA17_Chr8g0345991 40.141 142 71 4 2 140 484 614 1.94e-23 96.3
Msa0702960 MtrunA17_Chr2g0300751 41.259 143 69 3 3 142 505 635 2.60e-23 95.9
Msa0702960 MtrunA17_Chr5g0398241 43.478 138 61 4 3 140 495 615 2.67e-23 95.5
Msa0702960 MtrunA17_Chr5g0398401 43.478 138 61 4 3 140 495 615 2.83e-23 95.5
Msa0702960 MtrunA17_Chr4g0070391 37.736 159 77 4 3 151 484 630 3.88e-23 95.1
Msa0702960 MtrunA17_Chr7g0246461 37.714 175 82 6 3 168 470 626 6.09e-23 94.7
Msa0702960 MtrunA17_Chr2g0303881 40.141 142 70 5 2 140 458 587 6.32e-23 94.7
Msa0702960 MtrunA17_Chr4g0020651 44.366 142 62 5 3 140 489 617 8.25e-23 94.4
Msa0702960 MtrunA17_Chr7g0250411 34.973 183 88 5 3 166 520 690 9.08e-23 94.4
Msa0702960 MtrunA17_Chr2g0285121 40.278 144 69 3 3 142 519 649 9.59e-23 94.0
Msa0702960 MtrunA17_Chr5g0398331 41.727 139 64 4 2 140 491 612 1.17e-22 94.0
Msa0702960 MtrunA17_Chr3g0134621 41.611 149 60 5 3 142 462 592 2.24e-22 93.2
Msa0702960 MtrunA17_Chr6g0470851 39.521 167 75 6 3 163 469 615 2.26e-22 93.2
Msa0702960 MtrunA17_Chr7g0276151 41.379 145 70 4 3 143 486 619 2.92e-22 92.8
Msa0702960 MtrunA17_Chr8g0345981 38.732 142 73 4 2 140 488 618 3.31e-22 92.4
Msa0702960 MtrunA17_Chr2g0285111 39.310 145 69 4 3 142 522 652 6.29e-22 91.7
Msa0702960 MtrunA17_Chr3g0120521 36.170 141 74 4 3 140 509 636 7.83e-22 91.7
Msa0702960 MtrunA17_Chr5g0398311 40.580 138 65 4 3 140 488 608 9.35e-22 91.3
Msa0702960 MtrunA17_Chr5g0439271 37.278 169 79 5 3 157 340 495 1.78e-21 90.5
Msa0702960 MtrunA17_Chr4g0057491 41.549 142 65 4 3 140 358 485 1.91e-21 90.5
Msa0702960 MtrunA17_Chr6g0470881 38.824 170 75 7 3 166 469 615 1.99e-21 90.1
Msa0702960 MtrunA17_Chr5g0423261 38.788 165 81 5 3 163 358 506 2.95e-21 89.7
Msa0702960 MtrunA17_Chr8g0354771 38.596 171 80 7 3 166 498 650 3.52e-21 89.7
Msa0702960 MtrunA17_Chr4g0057481 38.415 164 83 4 3 163 426 574 4.19e-21 89.4
Msa0702960 MtrunA17_Chr3g0136151 35.088 171 90 6 3 169 493 646 7.67e-21 88.6
Msa0702960 MtrunA17_Chr4g0057511 39.716 141 69 3 3 140 352 479 1.09e-20 88.2
Msa0702960 MtrunA17_Chr8g0377961 42.029 138 64 3 3 140 518 639 1.60e-20 87.8
Msa0702960 MtrunA17_Chr3g0105451 37.126 167 80 5 3 169 22 163 2.99e-20 85.1
Msa0702960 MtrunA17_Chr8g0351011 38.854 157 71 6 3 155 492 627 3.10e-20 87.0
Msa0702960 MtrunA17_Chr3g0143251 36.047 172 89 6 2 169 496 650 3.14e-20 87.0
Msa0702960 MtrunA17_Chr7g0248861 41.304 138 66 5 2 135 496 622 4.78e-20 86.3
Msa0702960 MtrunA17_Chr4g0057061 41.304 138 67 4 3 140 515 638 5.55e-20 86.3
Msa0702960 MtrunA17_Chr1g0146251 35.119 168 82 5 3 166 476 620 5.77e-20 86.3
Msa0702960 MtrunA17_Chr4g0057471 41.135 141 67 4 3 140 445 572 1.52e-19 84.7
Msa0702960 MtrunA17_Chr8g0345961 39.024 123 67 2 20 140 501 617 1.81e-19 84.7
Msa0702960 MtrunA17_Chr1g0170081 35.625 160 73 6 3 155 472 608 2.20e-19 84.3
Msa0702960 MtrunA17_Chr8g0334521 37.580 157 74 5 3 155 474 610 6.79e-19 83.2
Msa0702960 MtrunA17_Chr3g0079971 38.182 165 77 7 4 166 473 614 1.07e-18 82.4
Msa0702960 MtrunA17_Chr8g0334491 34.756 164 79 5 1 163 474 610 1.26e-18 82.4
Msa0702960 MtrunA17_Chr1g0146271 35.838 173 74 8 3 166 474 618 2.12e-18 81.6
Msa0702960 MtrunA17_Chr6g0480721 39.310 145 62 5 3 143 343 465 2.69e-18 81.3
Msa0702960 MtrunA17_Chr7g0246451 39.007 141 62 5 3 140 485 604 9.43e-18 79.7
Msa0702960 MtrunA17_Chr7g0227991 33.929 168 84 5 3 166 474 618 1.14e-17 79.3
Msa0702960 MtrunA17_Chr8g0346361 36.306 157 76 5 3 155 237 373 6.02e-17 77.4
Msa0702960 MtrunA17_Chr5g0447171 34.104 173 68 6 3 140 210 371 1.08e-15 73.6
Msa0702960 MtrunA17_Chr7g0266051 39.716 141 60 5 3 140 445 563 4.27e-15 72.0
Msa0702960 MtrunA17_Chr4g0071191 36.552 145 66 5 3 143 63 185 8.82e-15 69.7
Msa0702960 MtrunA17_Chr5g0418921 37.879 132 68 6 3 131 19 139 1.33e-14 68.2
Msa0702960 MtrunA17_Chr4g0035881 46.316 95 39 3 3 90 228 317 3.91e-14 68.6
Msa0702960 MtrunA17_Chr2g0301011 32.335 167 89 5 3 165 338 484 4.86e-14 68.9
Msa0702960 MtrunA17_Chr2g0301031 34.014 147 78 5 21 163 1 132 7.64e-14 67.0
Msa0702960 MtrunA17_Chr2g0312861 34.646 127 65 3 21 144 1 112 1.79e-13 66.6
Msa0702960 MtrunA17_Chr8g0376841 40.000 100 47 3 3 94 496 590 6.15e-13 65.9
Msa0702960 MtrunA17_Chr5g0398341 42.683 82 39 1 59 140 1 74 7.25e-13 61.6
Msa0702960 MtrunA17_Chr3g0097061 32.738 168 84 7 10 166 281 430 5.17e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0702960 AT4G20430.2 75.352 142 35 0 1 142 553 694 1.37e-69 225
Msa0702960 AT4G20430.3 75.352 142 35 0 1 142 577 718 1.44e-69 226
Msa0702960 AT4G20430.1 75.352 142 35 0 1 142 577 718 1.44e-69 226
Msa0702960 AT5G44530.2 66.871 163 53 1 1 163 562 723 2.97e-65 214
Msa0702960 AT5G44530.1 72.535 142 39 0 1 142 562 703 2.22e-64 211
Msa0702960 AT1G30600.1 70.714 140 41 0 1 140 552 691 6.92e-64 210
Msa0702960 AT4G30020.3 56.115 139 61 0 3 141 542 680 2.34e-48 167
Msa0702960 AT4G30020.1 56.115 139 61 0 3 141 542 680 2.34e-48 167
Msa0702960 AT4G30020.4 56.115 139 61 0 3 141 542 680 2.34e-48 167
Msa0702960 AT4G30020.2 56.115 139 61 0 3 141 542 680 2.34e-48 167
Msa0702960 AT2G19170.1 54.676 139 63 0 3 141 541 679 1.76e-45 159
Msa0702960 AT2G19170.2 54.676 139 63 0 3 141 541 679 1.76e-45 159
Msa0702960 AT1G62340.1 46.377 138 69 2 3 139 563 696 5.40e-30 115
Msa0702960 AT3G14240.1 41.954 174 78 5 3 170 496 652 7.67e-29 112
Msa0702960 AT1G04110.1 45.833 144 55 5 3 140 499 625 3.49e-27 107
Msa0702960 AT1G32970.1 47.826 138 57 3 3 140 466 588 1.00e-25 103
Msa0702960 AT5G67360.1 44.444 144 59 4 3 140 489 617 1.19e-25 102
Msa0702960 AT5G51750.1 41.667 144 63 4 3 140 507 635 4.20e-25 101
Msa0702960 AT4G34980.1 39.884 173 79 6 3 168 485 639 4.48e-25 101
Msa0702960 AT5G67090.1 40.116 172 66 6 3 164 476 620 6.87e-25 100
Msa0702960 AT4G21630.1 42.331 163 77 5 3 165 496 641 8.83e-24 97.4
Msa0702960 AT1G66210.1 39.264 163 77 4 3 165 498 638 3.16e-23 95.9
Msa0702960 AT1G20160.2 39.752 161 75 7 2 156 454 598 3.45e-23 95.9
Msa0702960 AT1G20160.1 39.752 161 75 7 2 156 493 637 3.66e-23 95.9
Msa0702960 AT5G45650.2 40.000 170 77 5 3 168 525 673 3.71e-23 95.5
Msa0702960 AT5G45650.1 40.000 170 77 5 3 168 525 673 3.71e-23 95.5
Msa0702960 AT5G11940.1 39.881 168 80 6 3 168 494 642 8.87e-23 94.7
Msa0702960 AT4G10520.1 43.478 138 63 3 3 140 488 610 2.41e-22 93.2
Msa0702960 AT3G14067.1 42.553 141 66 4 3 140 493 621 2.55e-22 93.2
Msa0702960 AT4G10510.1 43.478 138 63 3 3 140 497 619 2.82e-22 93.2
Msa0702960 AT4G10510.2 43.478 138 63 3 3 140 438 560 2.86e-22 93.2
Msa0702960 AT4G10510.3 43.478 138 63 3 3 140 509 631 2.94e-22 93.2
Msa0702960 AT4G10510.4 43.478 138 63 3 3 140 453 575 3.14e-22 93.2
Msa0702960 AT4G21640.1 40.491 163 80 5 3 165 470 615 5.67e-22 92.4
Msa0702960 AT2G05920.1 37.349 166 73 6 3 153 483 632 1.26e-21 91.3
Msa0702960 AT1G66220.1 36.196 163 80 4 3 165 495 633 1.83e-21 90.9
Msa0702960 AT2G04160.1 37.086 151 82 3 19 166 519 659 1.85e-21 90.9
Msa0702960 AT4G21650.1 38.037 163 84 4 3 165 503 648 2.18e-21 90.5
Msa0702960 AT4G10550.4 40.000 170 82 6 3 170 455 606 4.62e-21 89.7
Msa0702960 AT4G10550.2 40.000 170 82 6 3 170 455 606 4.62e-21 89.7
Msa0702960 AT4G10550.3 40.000 170 82 6 3 170 527 678 5.32e-21 89.4
Msa0702960 AT4G10550.1 40.000 170 82 6 3 170 511 662 5.46e-21 89.4
Msa0702960 AT4G21326.1 37.952 166 82 5 3 166 431 577 1.04e-20 88.6
Msa0702960 AT3G46850.1 44.056 143 61 6 3 144 476 600 2.13e-20 87.8
Msa0702960 AT4G26330.2 39.161 143 72 4 2 141 452 582 2.23e-20 87.8
Msa0702960 AT4G26330.1 39.161 143 72 4 2 141 466 596 2.37e-20 87.8
Msa0702960 AT5G45640.1 41.549 142 65 4 10 142 484 616 6.16e-20 86.3
Msa0702960 AT4G10540.1 42.029 138 65 3 3 140 507 629 7.30e-20 86.3
Msa0702960 AT1G32960.1 36.686 169 90 4 3 171 509 660 2.34e-19 84.7
Msa0702960 AT1G32980.1 43.363 113 56 2 53 165 1 105 4.74e-19 80.5
Msa0702960 AT5G58840.1 38.621 145 67 3 3 144 446 571 6.16e-19 83.6
Msa0702960 AT5G59090.1 39.161 143 67 3 3 144 468 591 6.89e-19 83.6
Msa0702960 AT5G59090.3 39.161 143 67 3 3 144 466 589 7.16e-19 83.2
Msa0702960 AT5G58830.1 36.552 145 70 3 3 144 445 570 1.38e-18 82.4
Msa0702960 AT1G20150.1 32.584 178 85 5 3 169 498 651 1.40e-18 82.4
Msa0702960 AT5G59090.2 39.161 143 62 4 3 144 468 586 3.43e-18 81.3
Msa0702960 AT1G32950.1 37.647 170 87 5 3 171 505 656 3.74e-18 81.3
Msa0702960 AT1G32950.2 37.278 169 89 4 3 171 454 605 4.24e-18 81.3
Msa0702960 AT4G10530.1 48.889 90 40 1 51 140 518 601 4.39e-18 81.3
Msa0702960 AT5G59120.1 39.161 143 67 3 3 144 467 590 4.68e-18 80.9
Msa0702960 AT5G59810.1 38.732 142 69 5 3 140 514 641 5.67e-18 80.9
Msa0702960 AT5G59100.1 39.310 145 66 4 3 144 475 600 6.82e-18 80.5
Msa0702960 AT5G59190.1 39.161 143 61 5 3 140 430 551 7.78e-18 80.5
Msa0702960 AT5G44530.3 71.429 49 14 0 1 49 562 610 1.51e-17 79.3
Msa0702960 AT5G58820.1 36.986 146 68 4 3 144 442 567 1.55e-17 79.3
Msa0702960 AT4G21323.1 35.714 168 86 6 4 169 537 684 6.82e-17 77.8
Msa0702960 AT4G00230.1 38.732 142 61 6 3 140 483 602 1.04e-16 77.0
Msa0702960 AT2G39850.1 37.671 146 61 6 2 141 493 614 2.76e-16 75.9
Msa0702960 AT1G01900.1 37.671 146 73 5 3 142 499 632 5.41e-16 75.1
Msa0702960 AT5G59130.1 38.194 144 70 3 1 144 462 586 6.95e-16 74.7
Msa0702960 AT5G59130.2 38.194 144 70 3 1 144 456 580 7.07e-16 74.7
Msa0702960 AT5G59130.4 38.194 144 70 3 1 144 466 590 7.96e-16 74.7
Msa0702960 AT5G59130.3 38.194 144 70 3 1 144 427 551 8.68e-16 74.3
Msa0702960 AT3G46840.1 39.860 143 67 6 3 144 476 600 1.20e-15 73.9
Msa0702960 AT1G32940.1 44.203 138 62 4 3 140 506 628 5.32e-15 72.4
Msa0702960 AT1G32940.4 44.203 138 62 4 3 140 455 577 5.74e-15 72.0
Msa0702960 AT1G32940.2 44.203 138 62 4 3 140 455 577 5.74e-15 72.0
Msa0702960 AT5G03620.1 40.426 141 59 4 3 140 490 608 6.96e-15 72.0
Msa0702960 AT5G58840.3 43.119 109 43 4 3 108 446 538 2.08e-13 67.4
Msa0702960 AT4G00230.2 43.011 93 43 3 3 91 483 569 1.12e-12 65.5
Msa0702960 AT4G15040.2 36.752 117 56 2 50 166 472 570 2.98e-12 64.3
Msa0702960 AT4G15040.1 36.752 117 56 2 50 166 472 570 2.98e-12 64.3
Msa0702960 AT5G03620.2 46.739 92 41 2 3 91 490 576 3.15e-11 61.2

Find 46 sgRNAs with CRISPR-Local

Find 52 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTGATTCAGATGAATTTCT+AGG 0.215343 4_4:-74824592 Msa0702960:intron
CATTATATTTATAATGTCTA+TGG 0.244975 4_4:-74824108 Msa0702960:CDS
TATGACCGCTGAGCCATTAT+TGG 0.268058 4_4:+74824261 None:intergenic
AATGGCAGCAGGACTGAAAT+TGG 0.269679 4_4:+74824332 None:intergenic
CTTCCAGGAGCGACCAGATT+TGG 0.294597 4_4:+74824646 None:intergenic
TCGCTCCTGGAAGTTTAATA+TGG 0.307253 4_4:-74824636 Msa0702960:CDS
GGAAGACTGTCCTCTGGATC+TGG 0.353324 4_4:+74824691 None:intergenic
CCCATGTCAAAGGGAGTTGC+TGG 0.353683 4_4:+74824213 None:intergenic
GTCCTCTGGATCTGGGCCTC+TGG 0.364474 4_4:+74824699 None:intergenic
CAAAGGGAGTTGCTGGAGAT+TGG 0.364867 4_4:+74824220 None:intergenic
GCAGCCCATATTAAACTTCC+AGG 0.399428 4_4:+74824631 None:intergenic
ATGGCTGCACCTCATGTTGC+TGG 0.403990 4_4:-74824384 Msa0702960:CDS
AAACCAAATCTGGTCGCTCC+TGG 0.405433 4_4:-74824649 Msa0702960:CDS
TTCAACAACGGTTGCAGTAT+AGG 0.405935 4_4:-74824064 None:intergenic
AATTTCAGTCCTGCTGCCAT+TGG 0.419045 4_4:-74824330 Msa0702960:CDS
CAACAGTGGGAAGCCAATAA+TGG 0.427981 4_4:-74824274 Msa0702960:CDS
CGCTCCTGGAAGTTTAATAT+GGG 0.445698 4_4:-74824635 Msa0702960:CDS
GCTGGAGATTGGTTTAGCTC+TGG 0.458495 4_4:+74824231 None:intergenic
GAAGACTGTCCTCTGGATCT+GGG 0.474959 4_4:+74824692 None:intergenic
GAAGTTTAATATGGGCTGCT+TGG 0.488618 4_4:-74824627 Msa0702960:CDS
ACTCCCTTTGACATGGGGAG+TGG 0.495132 4_4:-74824207 Msa0702960:CDS
ATGGCAGCAGGACTGAAATT+GGG 0.499760 4_4:+74824333 None:intergenic
GCTACTGCAGCATTAAATCC+AGG 0.504364 4_4:-74824174 Msa0702960:CDS
CCAGCAACTCCCTTTGACAT+GGG 0.510708 4_4:-74824213 Msa0702960:CDS
TCATGAGGAAGACTGTCCTC+TGG 0.512742 4_4:+74824685 None:intergenic
AAACCACTCCCCATGTCAAA+GGG 0.536442 4_4:+74824204 None:intergenic
AGCGCAGATCCAATGGCAGC+AGG 0.536844 4_4:+74824321 None:intergenic
TCCAGCAACTCCCTTTGACA+TGG 0.541263 4_4:-74824214 Msa0702960:CDS
AAAACCACTCCCCATGTCAA+AGG 0.544182 4_4:+74824203 None:intergenic
TAGAAATTCATCTGAATCAG+TGG 0.558632 4_4:+74824594 None:intergenic
GGTGGAAAGCGCAGATCCAA+TGG 0.562075 4_4:+74824314 None:intergenic
AGATTGGTTTAGCTCTGGTG+AGG 0.564989 4_4:+74824236 None:intergenic
TTCAAAATGTCAGCTTCATG+AGG 0.570451 4_4:+74824670 None:intergenic
CGTCTCTGTATGACAACAGT+GGG 0.595002 4_4:-74824287 Msa0702960:CDS
TGCCAGAGGCCCAGATCCAG+AGG 0.601511 4_4:-74824701 Msa0702960:CDS
GATTGGTTTAGCTCTGGTGA+GGG 0.606060 4_4:+74824237 None:intergenic
CTACTGCAGCATTAAATCCA+GGG 0.610741 4_4:-74824173 Msa0702960:CDS
TATTTCAGAAATTTCAACAA+CGG 0.611659 4_4:-74824076 Msa0702960:CDS
CAGCAACTCCCTTTGACATG+GGG 0.612900 4_4:-74824212 Msa0702960:CDS
GCGGCAAGACCAGCAACATG+AGG 0.671302 4_4:+74824375 None:intergenic
GTCATACAGAGACGCTGTGG+TGG 0.681598 4_4:+74824296 None:intergenic
AATGATGTCTGGGACAAGCA+TGG 0.682058 4_4:-74824403 Msa0702960:CDS
GTTATGTATTACTCTGCCAG+AGG 0.695396 4_4:-74824715 Msa0702960:CDS
GCGTCTCTGTATGACAACAG+TGG 0.697535 4_4:-74824288 Msa0702960:CDS
GGAAGCCAATAATGGCTCAG+CGG 0.740103 4_4:-74824266 Msa0702960:CDS
GTTGTCATACAGAGACGCTG+TGG 0.770578 4_4:+74824293 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAACAAACTTTTACTATAT+AGG - chr4_4:74824220-74824239 Msa0702960:CDS 15.0%
!! CATTATATTTATAATGTCTA+TGG - chr4_4:74824669-74824688 Msa0702960:CDS 15.0%
!! TATTTCAGAAATTTCAACAA+CGG - chr4_4:74824701-74824720 Msa0702960:CDS 20.0%
!! AAAATTTTGCAATGATGTCT+GGG - chr4_4:74824364-74824383 Msa0702960:CDS 25.0%
!!! TGACATTTTGAAACCAAATC+TGG - chr4_4:74824118-74824137 Msa0702960:CDS 30.0%
TAGAAATTCATCTGAATCAG+TGG + chr4_4:74824186-74824205 None:intergenic 30.0%
! ACTGATTCAGATGAATTTCT+AGG - chr4_4:74824185-74824204 Msa0702960:CDS 30.0%
! GATCTATATTTTCAACCAAC+AGG - chr4_4:74824339-74824358 Msa0702960:CDS 30.0%
! ATTGCAAAATTTTCACCTGT+TGG + chr4_4:74824357-74824376 None:intergenic 30.0%
! GAAAATTTTGCAATGATGTC+TGG - chr4_4:74824363-74824382 Msa0702960:CDS 30.0%
! AAACTTTTGCTTGATTAGTG+CGG + chr4_4:74824424-74824443 None:intergenic 30.0%
TTCAAAATGTCAGCTTCATG+AGG + chr4_4:74824110-74824129 None:intergenic 35.0%
TCGCTCCTGGAAGTTTAATA+TGG - chr4_4:74824141-74824160 Msa0702960:CDS 40.0%
CGCTCCTGGAAGTTTAATAT+GGG - chr4_4:74824142-74824161 Msa0702960:CDS 40.0%
! GAAGTTTAATATGGGCTGCT+TGG - chr4_4:74824150-74824169 Msa0702960:CDS 40.0%
CTACTGCAGCATTAAATCCA+GGG - chr4_4:74824604-74824623 Msa0702960:CDS 40.0%
CTTGAATCAAAAAGCAACCC+TGG + chr4_4:74824624-74824643 None:intergenic 40.0%
GCAGCCCATATTAAACTTCC+AGG + chr4_4:74824149-74824168 None:intergenic 45.0%
! AATGATGTCTGGGACAAGCA+TGG - chr4_4:74824374-74824393 Msa0702960:CDS 45.0%
ATGGCAGCAGGACTGAAATT+GGG + chr4_4:74824447-74824466 None:intergenic 45.0%
AATGGCAGCAGGACTGAAAT+TGG + chr4_4:74824448-74824467 None:intergenic 45.0%
AATTTCAGTCCTGCTGCCAT+TGG - chr4_4:74824447-74824466 Msa0702960:intron 45.0%
CGTCTCTGTATGACAACAGT+GGG - chr4_4:74824490-74824509 Msa0702960:intron 45.0%
CAACAGTGGGAAGCCAATAA+TGG - chr4_4:74824503-74824522 Msa0702960:intron 45.0%
TATGACCGCTGAGCCATTAT+TGG + chr4_4:74824519-74824538 None:intergenic 45.0%
!! GATTGGTTTAGCTCTGGTGA+GGG + chr4_4:74824543-74824562 None:intergenic 45.0%
!! AGATTGGTTTAGCTCTGGTG+AGG + chr4_4:74824544-74824563 None:intergenic 45.0%
AAACCACTCCCCATGTCAAA+GGG + chr4_4:74824576-74824595 None:intergenic 45.0%
AAAACCACTCCCCATGTCAA+AGG + chr4_4:74824577-74824596 None:intergenic 45.0%
GCTACTGCAGCATTAAATCC+AGG - chr4_4:74824603-74824622 Msa0702960:CDS 45.0%
GAAGACTGTCCTCTGGATCT+GGG + chr4_4:74824088-74824107 None:intergenic 50.0%
TCATGAGGAAGACTGTCCTC+TGG + chr4_4:74824095-74824114 None:intergenic 50.0%
AAACCAAATCTGGTCGCTCC+TGG - chr4_4:74824128-74824147 Msa0702960:CDS 50.0%
GTTGTCATACAGAGACGCTG+TGG + chr4_4:74824487-74824506 None:intergenic 50.0%
GCGTCTCTGTATGACAACAG+TGG - chr4_4:74824489-74824508 Msa0702960:intron 50.0%
GGAAGCCAATAATGGCTCAG+CGG - chr4_4:74824511-74824530 Msa0702960:intron 50.0%
!! GCTGGAGATTGGTTTAGCTC+TGG + chr4_4:74824549-74824568 None:intergenic 50.0%
CAAAGGGAGTTGCTGGAGAT+TGG + chr4_4:74824560-74824579 None:intergenic 50.0%
TCCAGCAACTCCCTTTGACA+TGG - chr4_4:74824563-74824582 Msa0702960:intron 50.0%
CCAGCAACTCCCTTTGACAT+GGG - chr4_4:74824564-74824583 Msa0702960:intron 50.0%
CAGCAACTCCCTTTGACATG+GGG - chr4_4:74824565-74824584 Msa0702960:intron 50.0%
GGAAGACTGTCCTCTGGATC+TGG + chr4_4:74824089-74824108 None:intergenic 55.0%
CTTCCAGGAGCGACCAGATT+TGG + chr4_4:74824134-74824153 None:intergenic 55.0%
ATGGCTGCACCTCATGTTGC+TGG - chr4_4:74824393-74824412 Msa0702960:CDS 55.0%
! GGTGGAAAGCGCAGATCCAA+TGG + chr4_4:74824466-74824485 None:intergenic 55.0%
GTCATACAGAGACGCTGTGG+TGG + chr4_4:74824484-74824503 None:intergenic 55.0%
CCCATGTCAAAGGGAGTTGC+TGG + chr4_4:74824567-74824586 None:intergenic 55.0%
ACTCCCTTTGACATGGGGAG+TGG - chr4_4:74824570-74824589 Msa0702960:intron 55.0%
GCGGCAAGACCAGCAACATG+AGG + chr4_4:74824405-74824424 None:intergenic 60.0%
AGCGCAGATCCAATGGCAGC+AGG + chr4_4:74824459-74824478 None:intergenic 60.0%
TGCCAGAGGCCCAGATCCAG+AGG - chr4_4:74824076-74824095 Msa0702960:CDS 65.0%
GTCCTCTGGATCTGGGCCTC+TGG + chr4_4:74824081-74824100 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 74824065 74824734 74824065 ID=Msa0702960;Name=Msa0702960
chr4_4 mRNA 74824065 74824734 74824065 ID=Msa0702960-mRNA-1;Parent=Msa0702960;Name=Msa0702960-mRNA-1;_AED=0.45;_eAED=0.45;_QI=0|0|0|1|1|1|2|0|171
chr4_4 exon 74824593 74824734 74824593 ID=Msa0702960-mRNA-1:exon:23372;Parent=Msa0702960-mRNA-1
chr4_4 exon 74824065 74824438 74824065 ID=Msa0702960-mRNA-1:exon:23371;Parent=Msa0702960-mRNA-1
chr4_4 CDS 74824593 74824734 74824593 ID=Msa0702960-mRNA-1:cds;Parent=Msa0702960-mRNA-1
chr4_4 CDS 74824065 74824438 74824065 ID=Msa0702960-mRNA-1:cds;Parent=Msa0702960-mRNA-1
Gene Sequence

>Msa0702960

ATGTATTACTCTGCCAGAGGCCCAGATCCAGAGGACAGTCTTCCTCATGAAGCTGACATTTTGAAACCAAATCTGGTCGCTCCTGGAAGTTTAATATGGGCTGCTTGGAGTTCTGTTGCCACTGATTCAGATGAATTTCTAGGTGAAAATTTTGCAATGATGTCTGGGACAAGCATGGCTGCACCTCATGTTGCTGGTCTTGCCGCACTAATCAAGCAAAAGTTTCCCAATTTCAGTCCTGCTGCCATTGGATCTGCGCTTTCCACCACAGCGTCTCTGTATGACAACAGTGGGAAGCCAATAATGGCTCAGCGGTCATATCCCTCACCAGAGCTAAACCAATCTCCAGCAACTCCCTTTGACATGGGGAGTGGTTTTGTGAATGCTACTGCAGCATTAAATCCAGGGTTGCTTTTTGATTCAAGTAAGTCACTTAATGAACTTCTGAATCATTATATTTATAATGTCTATGGAAATTCTAATATTTCAGAAATTTCAACAACGGTTGCAGTATAG

Protein sequence

>Msa0702960

MYYSARGPDPEDSLPHEADILKPNLVAPGSLIWAAWSSVATDSDEFLGENFAMMSGTSMAAPHVAGLAALIKQKFPNFSPAAIGSALSTTASLYDNSGKPIMAQRSYPSPELNQSPATPFDMGSGFVNATAALNPGLLFDSSKSLNELLNHYIYNVYGNSNISEISTTVAV*