AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0566460

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0566460 MtrunA17_Chr8g0380961 93.529 850 30 1 1 825 1 850 0.0 1610
Msa0566460 MtrunA17_Chr2g0302951 73.072 843 197 3 17 829 5 847 0.0 1227
Msa0566460 MtrunA17_Chr4g0071871 44.140 802 405 10 45 818 25 811 0.0 637
Msa0566460 MtrunA17_Chr2g0298601 41.697 825 437 11 21 818 4 811 0.0 609
Msa0566460 MtrunA17_Chr4g0075331 42.457 749 387 15 105 821 2 738 7.05e-179 533
Msa0566460 MtrunA17_Chr4g0070391 32.172 746 408 26 118 819 59 750 5.12e-85 287
Msa0566460 MtrunA17_Chr4g0076611 30.522 747 420 23 118 820 2 693 2.30e-80 273
Msa0566460 MtrunA17_Chr4g0057061 31.600 750 406 30 78 791 65 743 4.89e-80 274
Msa0566460 MtrunA17_Chr2g0300751 30.615 748 419 27 118 819 78 771 1.89e-79 272
Msa0566460 MtrunA17_Chr8g0369891 31.276 713 411 20 118 802 74 735 2.70e-79 271
Msa0566460 MtrunA17_Chr3g0120521 29.600 750 425 25 118 820 76 769 2.07e-78 269
Msa0566460 MtrunA17_Chr4g0053781 31.141 745 416 27 118 820 65 754 2.21e-78 269
Msa0566460 MtrunA17_Chr7g0262161 31.534 704 374 23 118 776 67 707 8.62e-78 268
Msa0566460 MtrunA17_Chr1g0189561 30.812 714 387 26 118 789 76 724 2.59e-76 263
Msa0566460 MtrunA17_Chr5g0407701 31.189 715 411 23 118 802 69 732 3.14e-76 263
Msa0566460 MtrunA17_Chr4g0037221 30.092 761 417 29 118 820 64 767 4.04e-75 260
Msa0566460 MtrunA17_Chr5g0401511 30.904 741 423 26 102 804 56 745 1.29e-74 259
Msa0566460 MtrunA17_Chr5g0398351 30.524 783 432 31 79 823 28 736 4.91e-73 261
Msa0566460 MtrunA17_Chr5g0398351 29.177 778 442 28 86 823 799 1507 5.76e-65 237
Msa0566460 MtrunA17_Chr8g0344331 29.827 751 425 27 118 819 76 773 2.53e-72 253
Msa0566460 MtrunA17_Chr4g0020651 30.698 759 440 30 102 824 52 760 4.13e-72 252
Msa0566460 MtrunA17_Chr1g0204321 28.590 766 441 28 104 820 68 776 2.07e-71 250
Msa0566460 MtrunA17_Chr5g0398241 30.116 777 432 29 86 821 48 754 3.94e-71 249
Msa0566460 MtrunA17_Chr8g0345971 30.563 746 413 28 118 822 79 760 2.30e-70 247
Msa0566460 MtrunA17_Chr5g0398331 31.039 741 404 28 118 821 81 751 2.94e-70 246
Msa0566460 MtrunA17_Chr8g0344971 28.225 783 437 27 102 826 50 765 8.08e-70 245
Msa0566460 MtrunA17_Chr5g0398401 29.782 779 436 29 86 823 48 756 1.87e-69 244
Msa0566460 MtrunA17_Chr4g0057531 29.122 752 437 24 118 824 78 778 3.81e-69 244
Msa0566460 MtrunA17_Chr7g0248871 29.105 749 421 29 118 820 79 763 2.80e-68 241
Msa0566460 MtrunA17_Chr2g0285121 30.380 790 431 31 98 820 45 782 3.13e-68 241
Msa0566460 MtrunA17_Chr7g0250411 30.728 755 423 32 118 820 77 783 1.55e-67 239
Msa0566460 MtrunA17_Chr8g0377961 28.968 756 460 23 100 820 61 774 2.22e-67 239
Msa0566460 MtrunA17_Chr7g0276151 29.772 702 397 25 119 785 79 719 2.82e-67 238
Msa0566460 MtrunA17_Chr4g0026641 29.482 753 447 28 82 797 25 730 3.90e-67 238
Msa0566460 MtrunA17_Chr7g0250371 29.897 776 444 34 102 823 58 787 8.40e-67 237
Msa0566460 MtrunA17_Chr7g0250481 30.065 765 436 30 118 823 76 800 9.29e-67 238
Msa0566460 MtrunA17_Chr1g0189251 28.854 759 414 31 118 827 78 759 1.60e-66 236
Msa0566460 MtrunA17_Chr8g0334521 29.200 750 425 26 102 820 59 733 1.20e-65 233
Msa0566460 MtrunA17_Chr2g0285111 31.389 720 378 28 98 756 49 713 8.81e-65 232
Msa0566460 MtrunA17_Chr7g0250391 29.563 778 443 30 102 823 57 785 6.51e-64 229
Msa0566460 MtrunA17_Chr1g0152771 31.111 630 352 23 103 702 50 627 1.26e-63 228
Msa0566460 MtrunA17_Chr8g0351011 28.435 735 427 27 118 820 84 751 2.24e-63 227
Msa0566460 MtrunA17_Chr7g0250331 29.644 786 449 32 102 820 58 806 4.10e-63 227
Msa0566460 MtrunA17_Chr3g0136151 28.883 734 426 31 105 793 52 734 5.64e-63 226
Msa0566460 MtrunA17_Chr7g0246461 29.245 742 403 31 118 820 81 739 6.31e-63 226
Msa0566460 MtrunA17_Chr3g0143251 29.813 748 427 32 102 804 55 749 7.11e-63 226
Msa0566460 MtrunA17_Chr8g0345981 27.321 754 429 25 118 820 72 757 1.08e-62 225
Msa0566460 MtrunA17_Chr1g0170081 29.733 750 421 32 102 820 56 730 2.30e-62 224
Msa0566460 MtrunA17_Chr4g0057481 28.356 730 429 26 134 820 11 689 3.08e-62 223
Msa0566460 MtrunA17_Chr1g0146271 29.167 744 435 28 102 820 56 732 3.24e-62 223
Msa0566460 MtrunA17_Chr8g0345991 26.810 746 441 26 118 820 70 753 3.73e-62 224
Msa0566460 MtrunA17_Chr5g0398311 31.098 701 376 26 118 785 81 707 3.94e-62 223
Msa0566460 MtrunA17_Chr1g0146251 28.514 747 438 29 102 820 56 734 1.62e-61 221
Msa0566460 MtrunA17_Chr4g0057471 28.175 756 440 28 118 825 13 713 4.15e-61 220
Msa0566460 MtrunA17_Chr4g0057461 28.167 671 393 22 194 820 3 628 2.21e-60 216
Msa0566460 MtrunA17_Chr7g0227991 28.010 764 443 29 92 823 48 736 1.94e-59 216
Msa0566460 MtrunA17_Chr6g0470881 29.028 751 424 33 102 820 56 729 3.40e-59 215
Msa0566460 MtrunA17_Chr7g0246451 28.711 714 399 25 118 794 78 718 8.66e-59 214
Msa0566460 MtrunA17_Chr3g0134621 28.385 768 416 29 100 819 53 734 2.98e-58 212
Msa0566460 MtrunA17_Chr6g0470851 27.540 748 448 26 102 825 56 733 5.70e-58 211
Msa0566460 MtrunA17_Chr8g0334491 29.781 685 376 29 102 757 54 662 5.77e-58 211
Msa0566460 MtrunA17_Chr3g0079971 29.255 752 430 31 102 824 55 733 9.34e-58 211
Msa0566460 MtrunA17_Chr8g0354771 28.218 769 440 29 101 813 45 757 6.75e-57 209
Msa0566460 MtrunA17_Chr2g0303881 28.859 745 427 30 118 820 42 725 1.03e-56 207
Msa0566460 MtrunA17_Chr5g0439271 29.841 630 365 22 234 821 8 602 3.51e-56 204
Msa0566460 MtrunA17_Chr7g0266051 30.000 710 407 27 93 773 8 656 1.01e-55 204
Msa0566460 MtrunA17_Chr4g0057491 29.061 671 380 29 194 820 3 621 1.05e-55 203
Msa0566460 MtrunA17_Chr5g0423261 28.571 672 384 30 193 820 2 621 1.40e-54 199
Msa0566460 MtrunA17_Chr4g0057511 27.202 647 384 23 214 820 16 615 2.45e-53 196
Msa0566460 MtrunA17_Chr8g0345961 27.357 753 433 28 118 820 68 756 5.71e-53 197
Msa0566460 MtrunA17_Chr8g0354741 28.443 668 375 25 188 813 21 627 2.76e-51 190
Msa0566460 MtrunA17_Chr7g0248861 28.976 635 343 25 102 693 67 636 1.25e-49 188
Msa0566460 MtrunA17_Chr7g0248861 35.223 247 148 5 169 415 625 859 8.78e-30 127
Msa0566460 MtrunA17_Chr8g0376841 27.911 541 307 17 118 638 79 556 2.53e-43 166
Msa0566460 MtrunA17_Chr7g0250461 33.573 417 244 17 118 521 77 473 9.89e-41 157
Msa0566460 MtrunA17_Chr6g0480721 32.716 324 195 9 118 438 6 309 2.31e-38 152
Msa0566460 MtrunA17_Chr6g0480721 32.114 246 135 11 569 791 336 572 5.91e-20 95.1
Msa0566460 MtrunA17_Chr3g0143241 28.478 460 282 20 97 543 50 475 9.13e-36 143
Msa0566460 MtrunA17_Chr7g0261691 29.132 357 221 11 191 539 14 346 1.56e-32 129
Msa0566460 MtrunA17_Chr2g0301011 27.273 572 296 22 144 699 2 469 8.76e-30 124
Msa0566460 MtrunA17_Chr8g0346361 37.313 201 107 3 214 414 8 189 8.40e-28 118
Msa0566460 MtrunA17_Chr8g0346361 29.707 239 143 8 570 788 231 464 3.42e-16 82.4
Msa0566460 MtrunA17_Chr7g0261701 31.690 284 141 11 570 820 26 289 7.53e-27 111
Msa0566460 MtrunA17_Chr4g0026651 34.836 244 140 9 193 431 87 316 1.69e-26 111
Msa0566460 MtrunA17_Chr3g0105461 27.855 359 198 12 66 413 13 321 1.13e-24 106
Msa0566460 MtrunA17_Chr3g0097061 32.278 316 177 14 159 470 17 299 3.02e-24 106
Msa0566460 MtrunA17_Chr4g0026661 33.040 227 127 7 594 797 12 236 1.19e-23 101
Msa0566460 MtrunA17_Chr2g0301911 33.790 219 124 6 219 436 39 237 1.93e-23 103
Msa0566460 MtrunA17_Chr2g0312841 34.021 194 110 3 214 407 13 188 2.43e-22 95.5
Msa0566460 MtrunA17_Chr5g0447171 24.813 536 309 20 350 823 7 510 2.69e-22 101
Msa0566460 MtrunA17_Chr5g0436021 35.329 167 97 3 235 401 31 186 2.56e-21 92.4
Msa0566460 MtrunA17_Chr3g0103061 33.500 200 113 7 118 309 73 260 5.07e-20 90.9
Msa0566460 MtrunA17_Chr3g0105451 31.600 250 129 12 570 792 16 250 2.88e-19 89.0
Msa0566460 MtrunA17_Chr7g0250441 30.000 290 144 13 570 820 13 282 2.94e-17 83.6
Msa0566460 MtrunA17_Chr4g0071191 35.000 180 91 8 569 731 56 226 1.39e-16 80.5
Msa0566460 MtrunA17_Chr3g0103071 27.083 288 179 10 322 609 3 259 4.39e-16 79.7
Msa0566460 MtrunA17_Chr4g0035881 34.646 127 81 1 287 413 20 144 3.47e-15 77.8
Msa0566460 MtrunA17_Chr2g0312861 27.016 248 158 9 594 820 1 246 3.23e-13 71.6
Msa0566460 MtrunA17_Chr8g0376851 31.481 162 101 7 668 820 11 171 7.97e-12 64.7
Msa0566460 MtrunA17_Chr3g0142961 28.000 125 81 4 663 778 11 135 3.03e-11 62.0
Msa0566460 MtrunA17_Chr7g0269611 60.000 50 20 0 637 686 58 107 3.86e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0566460 AT4G20430.3 63.011 857 276 8 12 828 1 856 0.0 1080
Msa0566460 AT4G20430.1 63.011 857 276 8 12 828 1 856 0.0 1080
Msa0566460 AT5G44530.1 62.217 839 275 4 18 825 11 838 0.0 1065
Msa0566460 AT5G44530.2 60.417 864 275 5 18 825 11 863 0.0 1050
Msa0566460 AT4G20430.2 61.215 856 269 9 12 828 1 832 0.0 1027
Msa0566460 AT1G30600.1 60.191 839 290 6 19 826 7 832 0.0 1017
Msa0566460 AT5G44530.3 63.339 611 207 3 18 622 11 610 0.0 803
Msa0566460 AT2G19170.1 43.247 807 412 13 42 818 18 808 0.0 605
Msa0566460 AT2G19170.2 43.247 807 412 13 42 818 18 808 0.0 605
Msa0566460 AT4G30020.3 42.034 816 432 11 31 818 7 809 0.0 604
Msa0566460 AT4G30020.1 42.034 816 432 11 31 818 7 809 0.0 604
Msa0566460 AT4G30020.4 42.034 816 432 11 31 818 7 809 0.0 604
Msa0566460 AT4G30020.2 42.034 816 432 11 31 818 7 809 0.0 604
Msa0566460 AT1G62340.1 38.320 762 423 13 97 820 77 829 1.35e-163 496
Msa0566460 AT4G34980.1 31.414 764 409 27 113 820 54 758 1.94e-81 278
Msa0566460 AT3G14067.1 30.291 756 416 27 118 820 70 767 1.91e-79 273
Msa0566460 AT3G14240.1 29.744 743 426 25 118 814 63 755 4.62e-78 269
Msa0566460 AT4G10550.4 30.563 746 431 24 118 824 17 714 7.88e-77 264
Msa0566460 AT4G10550.2 30.563 746 431 24 118 824 17 714 7.88e-77 264
Msa0566460 AT4G10550.1 30.563 746 431 24 118 824 73 770 1.14e-76 265
Msa0566460 AT4G10550.3 30.563 746 431 24 118 824 89 786 1.39e-76 265
Msa0566460 AT5G67360.1 31.135 758 428 30 102 820 52 754 1.41e-76 264
Msa0566460 AT4G10540.1 30.417 743 437 24 118 824 69 767 1.36e-75 262
Msa0566460 AT4G10520.1 31.684 748 409 27 118 827 68 751 9.96e-75 259
Msa0566460 AT1G32960.1 29.818 768 452 22 98 824 48 769 2.09e-74 259
Msa0566460 AT1G04110.1 30.429 769 405 26 118 823 72 773 2.19e-73 256
Msa0566460 AT4G10530.1 31.025 751 401 27 118 827 68 742 1.20e-72 253
Msa0566460 AT1G32950.2 30.623 738 441 20 118 824 17 714 2.06e-72 252
Msa0566460 AT1G32950.1 30.623 738 441 20 118 824 68 765 3.98e-72 252
Msa0566460 AT4G10510.2 29.128 745 442 20 118 824 2 698 5.99e-72 250
Msa0566460 AT4G10510.4 29.128 745 442 20 118 824 17 713 8.83e-72 250
Msa0566460 AT4G10510.1 29.128 745 442 20 118 824 61 757 9.71e-72 251
Msa0566460 AT4G10510.3 29.128 745 442 20 118 824 73 769 1.37e-71 251
Msa0566460 AT5G67090.1 29.593 713 398 25 106 785 49 690 3.32e-70 246
Msa0566460 AT1G32940.4 29.865 740 445 22 118 824 17 715 6.88e-70 245
Msa0566460 AT1G32940.2 29.865 740 445 22 118 824 17 715 6.88e-70 245
Msa0566460 AT1G32940.1 29.683 758 458 23 100 824 51 766 7.81e-70 246
Msa0566460 AT5G45650.2 29.204 791 449 30 97 820 42 788 4.51e-69 244
Msa0566460 AT5G45650.1 29.204 791 449 30 97 820 42 788 4.51e-69 244
Msa0566460 AT5G03620.1 30.548 766 426 30 99 818 51 756 2.23e-68 242
Msa0566460 AT2G04160.1 29.690 741 437 27 118 820 76 770 2.81e-68 241
Msa0566460 AT2G05920.1 28.438 749 428 29 118 819 61 748 1.18e-66 237
Msa0566460 AT1G20160.2 28.818 753 453 27 105 820 16 722 1.63e-66 236
Msa0566460 AT1G20160.1 29.216 753 450 28 105 820 55 761 3.24e-66 236
Msa0566460 AT5G59810.1 28.820 746 442 26 84 790 49 744 9.44e-66 234
Msa0566460 AT1G66210.1 29.183 747 418 25 118 824 79 754 1.09e-65 234
Msa0566460 AT5G51750.1 28.287 753 432 26 118 820 80 774 2.20e-65 234
Msa0566460 AT1G66220.1 28.701 770 430 26 98 823 53 747 8.29e-64 229
Msa0566460 AT1G01900.1 28.962 732 414 26 119 802 81 754 8.99e-64 229
Msa0566460 AT1G32970.1 32.125 607 324 21 260 827 172 729 9.53e-62 223
Msa0566460 AT4G21630.1 29.872 780 413 29 100 826 61 759 1.40e-61 223
Msa0566460 AT5G11940.1 29.388 752 407 29 118 820 76 752 1.87e-60 219
Msa0566460 AT4G26330.2 29.211 760 425 27 118 822 22 723 8.92e-60 217
Msa0566460 AT1G20150.1 28.384 761 411 30 102 794 50 744 2.01e-59 217
Msa0566460 AT5G59120.1 27.346 746 446 28 102 820 51 727 5.69e-59 214
Msa0566460 AT5G59100.1 27.807 766 442 30 93 820 45 737 8.06e-59 214
Msa0566460 AT4G21323.1 28.235 765 440 28 98 820 96 793 3.82e-57 210
Msa0566460 AT4G21326.1 28.384 761 434 23 105 824 1 691 1.32e-56 207
Msa0566460 AT5G03620.2 31.818 550 311 18 99 636 51 548 2.34e-56 204
Msa0566460 AT4G26330.1 28.682 774 425 28 118 822 22 737 3.21e-56 207
Msa0566460 AT5G59090.2 28.685 753 430 30 102 824 52 727 2.21e-55 204
Msa0566460 AT5G58840.1 29.091 715 384 29 102 788 55 674 5.85e-55 202
Msa0566460 AT5G59090.1 28.496 758 430 30 102 824 52 732 1.25e-54 202
Msa0566460 AT3G46850.1 28.169 710 406 29 102 778 53 691 3.94e-54 201
Msa0566460 AT4G00230.1 27.086 731 451 24 114 820 71 743 1.18e-53 199
Msa0566460 AT5G59130.3 27.172 725 430 24 120 820 36 686 3.75e-53 197
Msa0566460 AT5G59090.3 28.496 758 428 31 102 824 52 730 4.04e-53 197
Msa0566460 AT5G58830.1 27.374 716 396 28 102 788 53 673 4.20e-53 197
Msa0566460 AT5G59130.4 27.172 725 430 24 120 820 75 725 4.63e-53 197
Msa0566460 AT4G21650.1 27.975 790 420 33 100 826 63 766 1.11e-52 197
Msa0566460 AT5G59190.1 27.924 684 390 24 102 757 15 623 1.33e-52 196
Msa0566460 AT5G58820.1 27.839 722 399 25 102 795 49 676 1.46e-52 196
Msa0566460 AT5G59130.2 27.310 725 419 23 120 820 75 715 2.96e-52 195
Msa0566460 AT1G32940.3 30.684 541 329 17 100 632 51 553 4.28e-52 192
Msa0566460 AT5G59130.1 27.172 725 426 25 120 820 75 721 1.60e-51 193
Msa0566460 AT3G46840.1 27.157 707 416 27 102 778 54 691 1.56e-49 187
Msa0566460 AT2G39850.1 26.928 713 406 32 94 755 39 687 5.68e-46 177
Msa0566460 AT5G45640.1 28.279 732 405 31 125 790 38 715 3.17e-45 174
Msa0566460 AT4G15040.2 27.151 744 443 28 102 820 16 685 2.73e-44 171
Msa0566460 AT4G15040.1 27.151 744 443 28 102 820 16 685 2.73e-44 171
Msa0566460 AT5G58840.3 29.725 545 282 20 102 638 55 506 1.67e-43 166
Msa0566460 AT4G00230.2 28.355 529 319 16 114 638 71 543 4.50e-42 163
Msa0566460 AT1G20160.3 28.008 482 305 15 105 581 55 499 2.93e-38 151
Msa0566460 AT5G58840.2 34.161 322 178 11 102 418 55 347 1.25e-35 142
Msa0566460 AT4G21640.1 31.845 336 200 11 100 415 63 389 2.37e-30 128
Msa0566460 AT4G21640.1 30.872 298 161 9 558 826 452 733 4.79e-23 105
Msa0566460 AT1G32980.1 31.720 186 95 4 626 785 1 180 3.09e-18 84.0

Find 207 sgRNAs with CRISPR-Local

Find 343 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGAATGCATAATAATATTT+TGG 0.184262 4_1:-67563392 Msa0566460:three_prime_UTR
ACTGATTCAGATGAATTTCT+AGG 0.215343 4_1:-67564700 Msa0566460:intron
AGCCCCTACTTCTCATTATC+AGG 0.234397 4_1:-67568491 Msa0566460:CDS
GCTCTTCCTCATTTGTGTTT+TGG 0.236600 4_1:+67568624 None:intergenic
TATAGCAACTCACTATTTCT+TGG 0.243970 4_1:-67565897 Msa0566460:CDS
AGTGGCACTGTTGTGTTTCT+TGG 0.248936 4_1:-67568584 Msa0566460:CDS
CTAGAGGATTCTGCAGAAAT+TGG 0.249790 4_1:-67563432 Msa0566460:three_prime_UTR
AAGGCCCTATACAAGGAATT+TGG 0.253229 4_1:-67566666 Msa0566460:CDS
CAGATTCTTGGCTGTTTCTA+AGG 0.253389 4_1:+67565178 None:intergenic
GGGGCTGTTGCTAGCATTAA+TGG 0.266707 4_1:-67564883 Msa0566460:CDS
TATGACCGCTGAGCCATTAT+TGG 0.268058 4_1:+67564370 None:intergenic
GTGCAAGCTGCTGGAAATAC+TGG 0.280493 4_1:-67565993 Msa0566460:CDS
AGAAGTGTCCAATGTGGTTT+TGG 0.289687 4_1:-67567758 Msa0566460:CDS
ATATCAGGAGGACGCCTATT+TGG 0.291937 4_1:+67566080 None:intergenic
CTTCCAGGAGCGACCAGATT+TGG 0.294597 4_1:+67564754 None:intergenic
TTGTTGAAGAAGGTGTTTAA+AGG 0.302728 4_1:-67567984 Msa0566460:CDS
TCGCTCCTGGAAGTTTAATA+TGG 0.307253 4_1:-67564744 Msa0566460:CDS
TTCTAAGGCCTGGTTGATAC+TGG 0.317537 4_1:+67565193 None:intergenic
TCCATTGCATATAATTGTTT+CGG 0.325816 4_1:-67563574 Msa0566460:three_prime_UTR
TCGCAGCATTGCTGTTTATA+AGG 0.326075 4_1:-67566685 Msa0566460:intron
CACTTCAGACGCGGTGCTGC+TGG 0.326240 4_1:-67568445 Msa0566460:CDS
CCCATGAATCCTTCTGTGAA+TGG 0.333797 4_1:-67565134 Msa0566460:CDS
GACAACAATGCCATGTCTAT+TGG 0.335196 4_1:+67566041 None:intergenic
TCCTCCAAATTCCTTGTATA+GGG 0.337902 4_1:+67566662 None:intergenic
TCGCCAGTTGTGTAGCATTA+AGG 0.337976 4_1:+67563645 None:intergenic
ACCAGCAGCACTCAGATTCT+TGG 0.338107 4_1:+67565166 None:intergenic
GGAATTCCAGTGGTTGTTGC+TGG 0.346510 4_1:-67567274 Msa0566460:CDS
TCAGCAAAACTAGGGTGTTT+AGG 0.346643 4_1:+67567601 None:intergenic
GGAAGACTGTCCTCTGGATC+TGG 0.353324 4_1:+67564799 None:intergenic
TGTTGAAGAAGGTGTTTAAA+GGG 0.353475 4_1:-67567983 Msa0566460:CDS
CCCATGTCAAAGGGAGTTGC+TGG 0.353683 4_1:+67564322 None:intergenic
GTGGCACTGTTGTGTTTCTT+GGG 0.359632 4_1:-67568583 Msa0566460:CDS
GTCCTCTGGATCTGGGCCTC+TGG 0.364474 4_1:+67564807 None:intergenic
CGTGCAATAGGAAGCTTGTT+GGG 0.364774 4_1:-67567498 Msa0566460:CDS
ATCCTCCAAATTCCTTGTAT+AGG 0.364835 4_1:+67566661 None:intergenic
CAAAGGGAGTTGCTGGAGAT+TGG 0.364867 4_1:+67564329 None:intergenic
TGCAAATGAAATTATTATGC+TGG 0.366485 4_1:+67565079 None:intergenic
TTGAAGAAAGTTGCAATATC+AGG 0.369864 4_1:+67566065 None:intergenic
CCATCTCAACTATTTCTATT+CGG 0.373805 4_1:+67563599 None:intergenic
CTGCCAGCTTTGGAAGGATT+GGG 0.378864 4_1:-67563790 Msa0566460:CDS
GCTTGTCAATCACTCCAAAT+AGG 0.380391 4_1:-67566094 Msa0566460:CDS
TTGTATAGCTACACATTAAG+AGG 0.384107 4_1:+67565237 None:intergenic
GCTGGCAGTTGAGCTGTTGC+TGG 0.387080 4_1:+67563805 None:intergenic
AATTTGTACATTGTGTTCTC+AGG 0.391410 4_1:+67565368 None:intergenic
GACAGTGCTTCTCCCTTTGA+TGG 0.392462 4_1:-67567421 Msa0566460:CDS
TTCCATCTGGTTCGTGCAAT+AGG 0.393130 4_1:-67567510 Msa0566460:CDS
TTACCTTGGTTTGTGAAGTC+TGG 0.394743 4_1:+67568417 None:intergenic
GTTGTTGCTGGGCATCATTT+TGG 0.396448 4_1:-67567262 Msa0566460:CDS
CTAAAGGATGACATGCTCAT+AGG 0.396865 4_1:+67565963 None:intergenic
GCAGCCCATATTAAACTTCC+AGG 0.399428 4_1:+67564739 None:intergenic
ATGGCTGCACCTCATGTTGC+TGG 0.403990 4_1:-67564492 Msa0566460:intron
AAACCAAATCTGGTCGCTCC+TGG 0.405433 4_1:-67564757 Msa0566460:CDS
TTTGGAAGGATTGGGTTGTT+TGG 0.405933 4_1:-67563782 Msa0566460:CDS
CACATATTGGGTACATTTAG+TGG 0.408971 4_1:-67568602 Msa0566460:CDS
GTAAGTTTCTTGATCATGTT+TGG 0.409588 4_1:-67568661 None:intergenic
ACTGCCAGCTTTGGAAGGAT+TGG 0.412006 4_1:-67563791 Msa0566460:CDS
GGAAATAATGCGACTATACT+TGG 0.413840 4_1:-67565876 Msa0566460:CDS
AACAGCTCAACTGCCAGCTT+TGG 0.414248 4_1:-67563800 Msa0566460:CDS
TTCTCTGAACTACTCTAGAT+TGG 0.417339 4_1:+67563966 None:intergenic
AAGTAAGTTCAATAAAGATT+TGG 0.418898 4_1:-67565270 Msa0566460:CDS
ACCATTCACAGAAGGATTCA+TGG 0.420328 4_1:+67565133 None:intergenic
TCTTGGCTGTTTCTAAGGCC+TGG 0.421213 4_1:+67565183 None:intergenic
AAATGAGGAAGAGCACATAT+TGG 0.422286 4_1:-67568615 Msa0566460:CDS
CAACCTTGCTATTGTGATTG+AGG 0.424024 4_1:+67563991 None:intergenic
CAACAGTGGGAAGCCAATAA+TGG 0.427981 4_1:-67564383 Msa0566460:CDS
TAGGTCTTCCACAGGGAGCT+TGG 0.428639 4_1:-67567693 Msa0566460:CDS
CAGGGAGCTTGGTTTCAATC+AGG 0.434082 4_1:-67567682 Msa0566460:CDS
CAAGGAATTTGGAGGATTTG+CGG 0.434744 4_1:-67566655 Msa0566460:CDS
AACCTTGCTATTGTGATTGA+GGG 0.435143 4_1:+67563992 None:intergenic
CCAGCTCTGGTTATGTTGAC+TGG 0.437700 4_1:-67563533 Msa0566460:three_prime_UTR
GTTTCTTGATCATGTTTGGT+GGG 0.443823 4_1:-67568657 None:intergenic
GCTTCTCCCTTTGATGGTGA+TGG 0.444913 4_1:-67567415 Msa0566460:CDS
CGCTCCTGGAAGTTTAATAT+GGG 0.445698 4_1:-67564743 Msa0566460:CDS
TCATGATTCTTTGTTGAAGA+AGG 0.446092 4_1:-67567994 Msa0566460:CDS
GATTTATCATCAGCAAAACT+AGG 0.446508 4_1:+67567592 None:intergenic
ATTGGGTTGTTTGGTAATCA+AGG 0.449106 4_1:-67563773 Msa0566460:CDS
ACACCTTAATGCTACACAAC+TGG 0.449598 4_1:-67563648 Msa0566460:three_prime_UTR
AGCTATCATTACTTGATCAA+TGG 0.453190 4_1:-67567939 Msa0566460:CDS
AGTCCATGGATCTTTACAAT+TGG 0.454179 4_1:-67565942 Msa0566460:CDS
TAAAGGATGACATGCTCATA+GGG 0.454776 4_1:+67565964 None:intergenic
GCAAATGAAATTATTATGCT+GGG 0.458478 4_1:+67565080 None:intergenic
GCTGGAGATTGGTTTAGCTC+TGG 0.458495 4_1:+67564340 None:intergenic
TTCAATAAAGATTTGGTCCA+GGG 0.458870 4_1:-67565263 Msa0566460:CDS
TAATTGTTTCGGTACACACT+TGG 0.461659 4_1:-67563563 Msa0566460:three_prime_UTR
CACGAACCAGATGGAAAATC+CGG 0.467789 4_1:+67567517 None:intergenic
ATCCATTCAATGCTCCTGCT+TGG 0.469698 4_1:-67567564 Msa0566460:CDS
TGTAAAGATCCATGGACTAA+AGG 0.470963 4_1:+67565947 None:intergenic
GAAGACTGTCCTCTGGATCT+GGG 0.474959 4_1:+67564800 None:intergenic
TCGTGCAATAGGAAGCTTGT+TGG 0.479155 4_1:-67567499 Msa0566460:CDS
AACATAGCTTCTATTGCAGC+TGG 0.480788 4_1:-67567304 Msa0566460:CDS
ATGAAACTTATAGTGTTGGT+TGG 0.482569 4_1:-67563922 Msa0566460:CDS
TTGGTTGGAGTTCTCCATAC+GGG 0.483137 4_1:-67563907 Msa0566460:CDS
AATGAGGAAGAGCACATATT+GGG 0.483953 4_1:-67568614 Msa0566460:CDS
GCCAAGAATCTGAGTGCTGC+TGG 0.485011 4_1:-67565167 Msa0566460:CDS
TTCATTTGCAAATGATTCCA+AGG 0.486030 4_1:-67565066 Msa0566460:intron
GAAGTTTAATATGGGCTGCT+TGG 0.488618 4_1:-67564735 Msa0566460:CDS
CCCTTTGATGGTGATGGACA+TGG 0.488921 4_1:-67567409 Msa0566460:CDS
AGTTGAGTCAAACATTCCTC+TGG 0.491555 4_1:+67567447 None:intergenic
TCCATGTCCATCACCATCAA+AGG 0.491778 4_1:+67567408 None:intergenic
GTTCAATAAAGATTTGGTCC+AGG 0.492716 4_1:-67565264 Msa0566460:CDS
TCTGCAGAAATTGGATAAAG+AGG 0.494420 4_1:-67563423 Msa0566460:three_prime_UTR
ACTCCCTTTGACATGGGGAG+TGG 0.495132 4_1:-67564316 Msa0566460:CDS
AACCAAGCAGGAGCATTGAA+TGG 0.500722 4_1:+67567562 None:intergenic
TGTATACGTGTTGTTTAATG+TGG 0.501737 4_1:-67563474 Msa0566460:three_prime_UTR
TGTTTATAAGGCCCTATACA+AGG 0.502313 4_1:-67566673 Msa0566460:CDS
GCTACTGCAGCATTAAATCC+AGG 0.504364 4_1:-67564283 Msa0566460:CDS
TCACCCTGATAATGAGAAGT+AGG 0.504516 4_1:+67568487 None:intergenic
CACCCTGATAATGAGAAGTA+GGG 0.505028 4_1:+67568488 None:intergenic
CAGCTCTGGTTATGTTGACT+GGG 0.506866 4_1:-67563532 Msa0566460:three_prime_UTR
TAAAGGCAGATAAGCTATCA+AGG 0.508072 4_1:-67567786 Msa0566460:intron
TGCATTCCAAAACACAAATG+AGG 0.509809 4_1:-67568630 Msa0566460:CDS
CCAGCAACTCCCTTTGACAT+GGG 0.510708 4_1:-67564322 Msa0566460:CDS
TCATGAGGAAGACTGTCCTC+TGG 0.512742 4_1:+67564793 None:intergenic
ACTTCAGACGCGGTGCTGCT+GGG 0.513307 4_1:-67568444 Msa0566460:CDS
TCAGGTGGGTTTGAAACTGC+TGG 0.514003 4_1:-67567664 Msa0566460:CDS
CCAGTCAACATAACCAGAGC+TGG 0.515008 4_1:+67563533 None:intergenic
TGATGCCCAGCAACAACCAC+TGG 0.515226 4_1:+67567268 None:intergenic
CAACCCAATCCTTCCAAAGC+TGG 0.516651 4_1:+67563787 None:intergenic
GAATTCCAGTGGTTGTTGCT+GGG 0.519715 4_1:-67567273 Msa0566460:CDS
TTTCTTGATCATGTTTGGTG+GGG 0.519984 4_1:-67568656 None:intergenic
TGCTACACAACTGGCGAGTG+TGG 0.520016 4_1:-67563639 Msa0566460:three_prime_UTR
AATGCGACTATACTTGGAGT+TGG 0.522007 4_1:-67565870 Msa0566460:CDS
ACCGAAACAATTATATGCAA+TGG 0.522657 4_1:+67563573 None:intergenic
GGAGCTTGGTTTCAATCAGG+TGG 0.522948 4_1:-67567679 Msa0566460:CDS
GAGCTTGGTTTCAATCAGGT+GGG 0.523851 4_1:-67567678 Msa0566460:CDS
TAAGACTTGTCTCTCTCCAT+TGG 0.526010 4_1:+67563847 None:intergenic
ACTATTGCATTTGTTGACAC+TGG 0.529057 4_1:-67567631 Msa0566460:CDS
CAGCAGCACCGCGTCTGAAG+TGG 0.531157 4_1:+67568446 None:intergenic
CCGAATAGAAATAGTTGAGA+TGG 0.531776 4_1:-67563599 Msa0566460:three_prime_UTR
AAACCACTCCCCATGTCAAA+GGG 0.536442 4_1:+67564313 None:intergenic
AATTGTTTCGGTACACACTT+GGG 0.539733 4_1:-67563562 Msa0566460:three_prime_UTR
TCCAGCAACTCCCTTTGACA+TGG 0.541263 4_1:-67564323 Msa0566460:CDS
TTGTTGTCAGCTACAAAAGC+TGG 0.541505 4_1:-67566026 Msa0566460:CDS
TCTAGAGGTGATTAAACTAG+AGG 0.542348 4_1:-67563448 Msa0566460:three_prime_UTR
GTTGAAGAAGGTGTTTAAAG+GGG 0.543043 4_1:-67567982 Msa0566460:CDS
AAAACCACTCCCCATGTCAA+AGG 0.544182 4_1:+67564312 None:intergenic
GCTCAACTGCCAGCTTTGGA+AGG 0.544458 4_1:-67563796 Msa0566460:CDS
AGTTTCTTGATCATGTTTGG+TGG 0.547331 4_1:-67568658 None:intergenic
CCATTCACAGAAGGATTCAT+GGG 0.547582 4_1:+67565134 None:intergenic
GCCCTATACAAGGAATTTGG+AGG 0.549042 4_1:-67566663 Msa0566460:CDS
ACTCGCTTCTCTCTTGCCAA+TGG 0.552492 4_1:-67563863 Msa0566460:CDS
GCATGTCATCCTTTAGTCCA+TGG 0.552896 4_1:-67565956 Msa0566460:CDS
CAACAACCACTGGAATTCCA+TGG 0.553184 4_1:+67567278 None:intergenic
GCACCAATTGTAAAGATCCA+TGG 0.556135 4_1:+67565939 None:intergenic
GGGTTTGAAACTGCTGGAGA+AGG 0.556235 4_1:-67567658 Msa0566460:CDS
TGTGCTTGTTAACCAACAGC+AGG 0.556568 4_1:-67567910 Msa0566460:intron
TCTATTGCAGCTGGAAACCA+TGG 0.556776 4_1:-67567295 Msa0566460:CDS
CCATGTCCATCACCATCAAA+GGG 0.556925 4_1:+67567409 None:intergenic
TGGCACCTGTGAGGTTACTC+CGG 0.558000 4_1:-67567536 Msa0566460:CDS
TAGAAATTCATCTGAATCAG+TGG 0.558632 4_1:+67564702 None:intergenic
TGCAAGCTGCTGGAAATACT+GGG 0.559931 4_1:-67565992 Msa0566460:CDS
GAAAATGAAACTTATAGTGT+TGG 0.560647 4_1:-67563926 Msa0566460:CDS
AGCTGAAAACCATTCACAGA+AGG 0.560950 4_1:+67565125 None:intergenic
AGATTGGTTTAGCTCTGGTG+AGG 0.564989 4_1:+67564345 None:intergenic
CAGAGTAATACATAACACTT+GGG 0.565572 4_1:+67564830 None:intergenic
GTTGGTTGGAGTTCTCCATA+CGG 0.568006 4_1:-67563908 Msa0566460:CDS
GTGCAATAGGAAGCTTGTTG+GGG 0.568461 4_1:-67567497 Msa0566460:CDS
TGGCACTGTTGTGTTTCTTG+GGG 0.569653 4_1:-67568582 Msa0566460:CDS
TTGGCAAGAGAGAAGCGAGT+TGG 0.570384 4_1:+67563866 None:intergenic
TTCAAAATGTCAGCTTCATG+AGG 0.570451 4_1:+67564778 None:intergenic
TATACAATGAGATTTGTGCT+TGG 0.571299 4_1:-67565221 Msa0566460:CDS
ACTTGGGCTATATCCAGCTC+TGG 0.586976 4_1:-67563546 Msa0566460:three_prime_UTR
GCAGAGTAATACATAACACT+TGG 0.590858 4_1:+67564829 None:intergenic
CGTCTCTGTATGACAACAGT+GGG 0.595002 4_1:-67564396 Msa0566460:CDS
ATTGCTGATGATATGTATGT+TGG 0.601383 4_1:-67565308 Msa0566460:CDS
TGCCAGAGGCCCAGATCCAG+AGG 0.601511 4_1:-67564809 Msa0566460:CDS
ATTTATCATCAGCAAAACTA+GGG 0.601954 4_1:+67567593 None:intergenic
GATTGGTTTAGCTCTGGTGA+GGG 0.606060 4_1:+67564346 None:intergenic
GCCCCTACTTCTCATTATCA+GGG 0.607839 4_1:-67568490 Msa0566460:CDS
CTACTGCAGCATTAAATCCA+GGG 0.610741 4_1:-67564282 Msa0566460:CDS
GCTATAAACTCGATCGTGAG+AGG 0.611721 4_1:+67565914 None:intergenic
ACATCATACAAACCTGCTGT+TGG 0.612010 4_1:+67567898 None:intergenic
CAGCAACTCCCTTTGACATG+GGG 0.612900 4_1:-67564321 Msa0566460:CDS
TGGTCTCTCCAGTATCAACC+AGG 0.613616 4_1:-67565201 Msa0566460:CDS
GATGACATGCTCATAGGGGA+AGG 0.614063 4_1:+67565969 None:intergenic
TTCTACAGTTCTAGACTACA+CGG 0.621861 4_1:-67564068 Msa0566460:CDS
TTCCTATTGCACGAACCAGA+TGG 0.622350 4_1:+67567508 None:intergenic
TACACATTAAGAGGTTCCCC+TGG 0.622570 4_1:+67565246 None:intergenic
GTTTATAACCACTTCAGACG+CGG 0.625790 4_1:-67568454 Msa0566460:CDS
TGGTTGGAGTTCTCCATACG+GGG 0.626876 4_1:-67563906 Msa0566460:CDS
CAGGTGCCACAAAACCAAGC+AGG 0.627925 4_1:+67567550 None:intergenic
GCAGCATCTGCTATAACCAG+AGG 0.630755 4_1:-67567463 Msa0566460:CDS
TGCCCTCAATCACAATAGCA+AGG 0.635273 4_1:-67563994 Msa0566460:CDS
TCTCACTGAGAAAATTAGCA+TGG 0.639713 4_1:-67563712 Msa0566460:CDS
AAGAAAGTTGCAATATCAGG+AGG 0.644006 4_1:+67566068 None:intergenic
GAACCAGACTTCACAAACCA+AGG 0.646301 4_1:-67568420 Msa0566460:intron
TGTTGTTGCAGCTATTGACC+AGG 0.648187 4_1:-67566628 Msa0566460:intron
TCAATAAAGATTTGGTCCAG+GGG 0.650419 4_1:-67565262 Msa0566460:CDS
GCTGTTGCTAGCATTAATGG+TGG 0.651040 4_1:-67564880 Msa0566460:CDS
TTTCTTCAATCCAATAGACA+TGG 0.653465 4_1:-67566051 Msa0566460:CDS
ACCCTGATAATGAGAAGTAG+GGG 0.656098 4_1:+67568489 None:intergenic
ATAAACTCGATCGTGAGAGG+TGG 0.657029 4_1:+67565917 None:intergenic
AAAATCCGGAGTAACCTCAC+AGG 0.663811 4_1:+67567531 None:intergenic
GCAGCAAGACCAGCAACATG+AGG 0.671302 4_1:+67564483 None:intergenic
ACAAAGACAGATAAGAGACA+TGG 0.674123 4_1:-67568035 Msa0566460:CDS
TGGAAACCATGGAATTCCAG+TGG 0.674811 4_1:-67567284 Msa0566460:CDS
AATGATGTCTGGGACAAGCA+TGG 0.682058 4_1:-67564511 Msa0566460:CDS
GATTGAAACCAAGCTCCCTG+TGG 0.682784 4_1:+67567685 None:intergenic
AAAGGATGACATGCTCATAG+GGG 0.689113 4_1:+67565965 None:intergenic
GTTATGTATTACTCTGCCAG+AGG 0.695396 4_1:-67564823 Msa0566460:CDS
GCGTCTCTGTATGACAACAG+TGG 0.697535 4_1:-67564397 Msa0566460:CDS
ATAAATAGTTACTGTGAACG+AGG 0.708219 4_1:+67567220 None:intergenic
TCTACAGTTCTAGACTACAC+GGG 0.708731 4_1:-67564067 Msa0566460:CDS
GAGAAGAGAAGTGTCCAATG+TGG 0.724946 4_1:-67567764 Msa0566460:CDS
AGGAATGTTTGACTCAACTG+AGG 0.725112 4_1:-67567443 Msa0566460:CDS
AGAGTAATACATAACACTTG+GGG 0.735362 4_1:+67564831 None:intergenic
GGAAGCCAATAATGGCTCAG+CGG 0.740103 4_1:-67564375 Msa0566460:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAAAATCTAAATAATTCA+TGG - chr4_1:67563800-67563819 Msa0566460:CDS 10.0%
!!! TGTAAATTTCATTTTTTTTT+AGG - chr4_1:67567847-67567866 Msa0566460:intron 10.0%
!!! AATTTTGAAATCACTTATAA+AGG - chr4_1:67564180-67564199 Msa0566460:intron 15.0%
!!! AAGAATCTGTTTATTTTTAT+TGG - chr4_1:67565565-67565584 Msa0566460:intron 15.0%
!!! AGAATCTGTTTATTTTTATT+GGG - chr4_1:67565566-67565585 Msa0566460:intron 15.0%
!!! ATTAGTAAATAGATTTTGAA+GGG + chr4_1:67565779-67565798 None:intergenic 15.0%
!!! AATTAGTAAATAGATTTTGA+AGG + chr4_1:67565780-67565799 None:intergenic 15.0%
!! TTAACAGAATTATAAAATTG+TGG + chr4_1:67565807-67565826 None:intergenic 15.0%
!!! ACAATTTTATAATTCTGTTA+AGG - chr4_1:67565806-67565825 Msa0566460:intron 15.0%
!! AAGAAATTCAAGATTTAAAA+TGG - chr4_1:67566398-67566417 Msa0566460:intron 15.0%
!! AAAGAACAAATTTCAAAAAT+TGG + chr4_1:67566573-67566592 None:intergenic 15.0%
!! ATAAAAACCAATATGAAAAA+TGG + chr4_1:67566951-67566970 None:intergenic 15.0%
!!! TAAACAAACTTTTACTATAT+AGG - chr4_1:67567318-67567337 Msa0566460:intron 15.0%
!! CATTATATTTATAATGTCTA+TGG - chr4_1:67567766-67567785 Msa0566460:CDS 15.0%
!!! TAGAATGCATAATAATATTT+TGG - chr4_1:67568591-67568610 Msa0566460:CDS 15.0%
!!! TTTCTTTTACTTGATATTTA+TGG - chr4_1:67568620-67568639 Msa0566460:CDS 15.0%
!! TATTATTGCATTTCCTTATT+TGG - chr4_1:67563653-67563672 Msa0566460:three_prime_UTR 20.0%
!! AATTTGGAAAAATGAATGTT+TGG - chr4_1:67563902-67563921 Msa0566460:CDS 20.0%
!!! TGAAGTTCTAACATTTTAAA+CGG + chr4_1:67564943-67564962 None:intergenic 20.0%
!! ATTTAATGGTCATAAATTTG+AGG - chr4_1:67565026-67565045 Msa0566460:intron 20.0%
!! TGTTACCTTAACAAATTATT+TGG - chr4_1:67565090-67565109 Msa0566460:CDS 20.0%
!!! ATTTTCTATCATCTTTCAAA+TGG + chr4_1:67565123-67565142 None:intergenic 20.0%
!! TGATAGAAAATTATAGAATC+TGG - chr4_1:67565132-67565151 Msa0566460:CDS 20.0%
!! GATAGAAAATTATAGAATCT+GGG - chr4_1:67565133-67565152 Msa0566460:CDS 20.0%
!! TTTATTCAAGAAAAAGAAGA+AGG - chr4_1:67565161-67565180 Msa0566460:CDS 20.0%
!!! ATACAACATTTCTTTTTTAC+AGG + chr4_1:67565187-67565206 None:intergenic 20.0%
!! AAAAAAATTGTGTCAACAAT+TGG + chr4_1:67565460-67565479 None:intergenic 20.0%
!! ATAAACAGATTCTTCAAAAA+TGG + chr4_1:67565559-67565578 None:intergenic 20.0%
!! AAAAGAAGATAAAATACAAC+AGG + chr4_1:67565668-67565687 None:intergenic 20.0%
!!! TGATTAACTTGATTTTTTAC+AGG - chr4_1:67565839-67565858 Msa0566460:intron 20.0%
!! AAAAATACACAAACATATTC+AGG + chr4_1:67566308-67566327 None:intergenic 20.0%
!!! TATACTATTTATACCAGTTT+TGG - chr4_1:67566426-67566445 Msa0566460:intron 20.0%
!! TATTAAGATGATGTTGTTAT+AGG + chr4_1:67566455-67566474 None:intergenic 20.0%
!! AAGTAAGTTCAATAAAGATT+TGG - chr4_1:67566713-67566732 Msa0566460:intron 20.0%
!! TCAGAAAAAATTGTTAAACT+TGG - chr4_1:67567079-67567098 Msa0566460:intron 20.0%
!! CAGAAAAAATTGTTAAACTT+GGG - chr4_1:67567080-67567099 Msa0566460:intron 20.0%
!! AGAAAAAATTGTTAAACTTG+GGG - chr4_1:67567081-67567100 Msa0566460:intron 20.0%
!! TATTTCAGAAATTTCAACAA+CGG - chr4_1:67567798-67567817 Msa0566460:intron 20.0%
!!! TGTTTAAATTTTAACTCTAC+TGG - chr4_1:67567946-67567965 Msa0566460:CDS 20.0%
! TTCAAAACAAAGATAGTGAA+AGG + chr4_1:67563598-67563617 None:intergenic 25.0%
!!! TTTCACTATCTTTGTTTTGA+AGG - chr4_1:67563597-67563616 Msa0566460:three_prime_UTR 25.0%
!!! TCATTTTAACAAATACTTGC+CGG + chr4_1:67563763-67563782 None:intergenic 25.0%
! TTGACTTTGTGAGTTTAATT+TGG - chr4_1:67563886-67563905 Msa0566460:CDS 25.0%
! ATTTATCATCAGCAAAACTA+GGG + chr4_1:67564393-67564412 None:intergenic 25.0%
! GATTGACACAAATAAAAGAA+TGG + chr4_1:67564624-67564643 None:intergenic 25.0%
! TTATTACAGATACATCAGAA+TGG + chr4_1:67564654-67564673 None:intergenic 25.0%
!!! TGCTTTTTGTAATCTGTTTA+TGG - chr4_1:67564815-67564834 Msa0566460:CDS 25.0%
!! GCTTTTTGTAATCTGTTTAT+GGG - chr4_1:67564816-67564835 Msa0566460:CDS 25.0%
!! CTTTTTGTAATCTGTTTATG+GGG - chr4_1:67564817-67564836 Msa0566460:CDS 25.0%
!!! TTGTAGAAAAGTACTTGAAT+TGG - chr4_1:67564866-67564885 Msa0566460:CDS 25.0%
!!! AAAAGTACTTGAATTGGTAA+AGG - chr4_1:67564872-67564891 Msa0566460:CDS 25.0%
! TTAGAACTTCAGATATTTGT+TGG - chr4_1:67564952-67564971 Msa0566460:CDS 25.0%
!!! AATATGTCAGTGCTATTTAA+TGG - chr4_1:67565012-67565031 Msa0566460:intron 25.0%
!!! ATAGGCCAAATAATTTGTTA+AGG + chr4_1:67565098-67565117 None:intergenic 25.0%
! ATCACATTAACACATACTTA+AGG + chr4_1:67565515-67565534 None:intergenic 25.0%
! TATGTGTTAATGTGATTTCA+TGG - chr4_1:67565519-67565538 Msa0566460:intron 25.0%
! AAGATAAAATACAACAGGAT+TGG + chr4_1:67565663-67565682 None:intergenic 25.0%
!!! TTTTGATTTGTGTTTTATCG+AGG - chr4_1:67565687-67565706 Msa0566460:intron 25.0%
! AGGAAATTATCAATACTGAA+CGG + chr4_1:67565746-67565765 None:intergenic 25.0%
!!! AAATTCTGTTTCTATAATCC+TGG - chr4_1:67566147-67566166 Msa0566460:intron 25.0%
!! AACATAATACTCAACTCTTT+TGG + chr4_1:67566209-67566228 None:intergenic 25.0%
! AATTTCTTGTTCCAGTTTAA+GGG + chr4_1:67566386-67566405 None:intergenic 25.0%
! GCAAATGAAATTATTATGCT+GGG + chr4_1:67566906-67566925 None:intergenic 25.0%
! TGCAAATGAAATTATTATGC+TGG + chr4_1:67566907-67566926 None:intergenic 25.0%
! AAACCAATATGAAAAATGGA+TGG + chr4_1:67566947-67566966 None:intergenic 25.0%
! AATTCTTCACTTGAAAAAGA+CGG - chr4_1:67567052-67567071 Msa0566460:intron 25.0%
!! AAAATTTTGCAATGATGTCT+GGG - chr4_1:67567462-67567481 Msa0566460:CDS 25.0%
!!! AATTTTAACTCTACTGGATA+TGG - chr4_1:67567952-67567971 Msa0566460:CDS 25.0%
! GAAAATGAAACTTATAGTGT+TGG - chr4_1:67568057-67568076 Msa0566460:intron 25.0%
! TCCATTGCATATAATTGTTT+CGG - chr4_1:67568409-67568428 Msa0566460:intron 25.0%
! TATTGCATTTCCTTATTTGG+CGG - chr4_1:67563656-67563675 Msa0566460:three_prime_UTR 30.0%
GTTCTTCTTGATTGAAGTTT+AGG - chr4_1:67563701-67563720 Msa0566460:CDS 30.0%
AAGTTATATCTGTGCTATGA+TGG - chr4_1:67563734-67563753 Msa0566460:CDS 30.0%
ACTCACAAAGTCAAGAAATT+AGG + chr4_1:67563880-67563899 None:intergenic 30.0%
TCATGATTCTTTGTTGAAGA+AGG - chr4_1:67563989-67564008 Msa0566460:CDS 30.0%
!! TTGTTGAAGAAGGTGTTTAA+AGG - chr4_1:67563999-67564018 Msa0566460:CDS 30.0%
!! TGTTGAAGAAGGTGTTTAAA+GGG - chr4_1:67564000-67564019 Msa0566460:CDS 30.0%
AGCTATCATTACTTGATCAA+TGG - chr4_1:67564044-67564063 Msa0566460:CDS 30.0%
AGAAAAATCCAAAACCACAT+TGG + chr4_1:67564236-67564255 None:intergenic 30.0%
GATTTATCATCAGCAAAACT+AGG + chr4_1:67564394-67564413 None:intergenic 30.0%
CTGATGTATCTGTAATAAAC+AGG - chr4_1:67564656-67564675 Msa0566460:intron 30.0%
ATAAATAGTTACTGTGAACG+AGG + chr4_1:67564766-67564785 None:intergenic 30.0%
! ATTTGTTGGTACTTAGTACT+TGG - chr4_1:67564966-67564985 Msa0566460:intron 30.0%
!! AGCACTGACATATTAATTCT+TGG + chr4_1:67565006-67565025 None:intergenic 30.0%
ATCATCTTTCAAATGGCAAT+AGG + chr4_1:67565116-67565135 None:intergenic 30.0%
ATGTATTGCTGACACATAAA+TGG + chr4_1:67565420-67565439 None:intergenic 30.0%
CATTAACACATACTTAAGGA+AGG + chr4_1:67565511-67565530 None:intergenic 30.0%
TCTTCAAAAATGGATCAAAC+AGG + chr4_1:67565549-67565568 None:intergenic 30.0%
!! AGATTTTGAAGGGATCATAT+GGG + chr4_1:67565769-67565788 None:intergenic 30.0%
!! TAGATTTTGAAGGGATCATA+TGG + chr4_1:67565770-67565789 None:intergenic 30.0%
TTGAAGAAAGTTGCAATATC+AGG + chr4_1:67565921-67565940 None:intergenic 30.0%
TTTCTTCAATCCAATAGACA+TGG - chr4_1:67565932-67565951 Msa0566460:CDS 30.0%
! TATAGCAACTCACTATTTCT+TGG - chr4_1:67566086-67566105 Msa0566460:CDS 30.0%
GAATTTCTTGTTCCAGTTTA+AGG + chr4_1:67566387-67566406 None:intergenic 30.0%
TTAACTCATTTCATCATCCA+TGG + chr4_1:67566491-67566510 None:intergenic 30.0%
AATTTGTACATTGTGTTCTC+AGG + chr4_1:67566618-67566637 None:intergenic 30.0%
ATTGCTGATGATATGTATGT+TGG - chr4_1:67566675-67566694 Msa0566460:CDS 30.0%
! TTCAATAAAGATTTGGTCCA+GGG - chr4_1:67566720-67566739 Msa0566460:intron 30.0%
TTGTATAGCTACACATTAAG+AGG + chr4_1:67566749-67566768 None:intergenic 30.0%
TATACAATGAGATTTGTGCT+TGG - chr4_1:67566762-67566781 Msa0566460:intron 30.0%
! ATTATGCTGGGAATTTTCAT+TGG + chr4_1:67566894-67566913 None:intergenic 30.0%
TTCATTTGCAAATGATTCCA+AGG - chr4_1:67566917-67566936 Msa0566460:intron 30.0%
!!! TATGCAATGTTGTTTTCAAC+TGG - chr4_1:67567007-67567026 Msa0566460:intron 30.0%
AGAGTAATACATAACACTTG+GGG + chr4_1:67567155-67567174 None:intergenic 30.0%
CAGAGTAATACATAACACTT+GGG + chr4_1:67567156-67567175 None:intergenic 30.0%
!!! TGACATTTTGAAACCAAATC+TGG - chr4_1:67567216-67567235 Msa0566460:intron 30.0%
TAGAAATTCATCTGAATCAG+TGG + chr4_1:67567284-67567303 None:intergenic 30.0%
! ACTGATTCAGATGAATTTCT+AGG - chr4_1:67567283-67567302 Msa0566460:CDS 30.0%
! GATCTATATTTTCAACCAAC+AGG - chr4_1:67567437-67567456 Msa0566460:CDS 30.0%
! ATTGCAAAATTTTCACCTGT+TGG + chr4_1:67567455-67567474 None:intergenic 30.0%
! GAAAATTTTGCAATGATGTC+TGG - chr4_1:67567461-67567480 Msa0566460:CDS 30.0%
! GATTACATGTCTTTTCTATG+TGG - chr4_1:67567877-67567896 Msa0566460:intron 30.0%
! TCTTTTCTATGTGGTATCAA+TGG - chr4_1:67567886-67567905 Msa0566460:intron 30.0%
!! ATGAAACTTATAGTGTTGGT+TGG - chr4_1:67568061-67568080 Msa0566460:intron 30.0%
!! CCATCTCAACTATTTCTATT+CGG + chr4_1:67568387-67568406 None:intergenic 30.0%
ACCGAAACAATTATATGCAA+TGG + chr4_1:67568413-67568432 None:intergenic 30.0%
!! TGTATACGTGTTGTTTAATG+TGG - chr4_1:67568509-67568528 Msa0566460:CDS 30.0%
! TGTTTAATGTGGTTTTCTAG+AGG - chr4_1:67568520-67568539 Msa0566460:CDS 30.0%
TGCATTCCAAAACACAAATG+AGG - chr4_1:67563353-67563372 Msa0566460:three_prime_UTR 35.0%
! AAATGAGGAAGAGCACATAT+TGG - chr4_1:67563368-67563387 Msa0566460:three_prime_UTR 35.0%
! AATGAGGAAGAGCACATATT+GGG - chr4_1:67563369-67563388 Msa0566460:three_prime_UTR 35.0%
CACATATTGGGTACATTTAG+TGG - chr4_1:67563381-67563400 Msa0566460:three_prime_UTR 35.0%
!! AAAAAAGCATCCGCCAAATA+AGG + chr4_1:67563669-67563688 None:intergenic 35.0%
ACAAAGACAGATAAGAGACA+TGG - chr4_1:67563948-67563967 Msa0566460:CDS 35.0%
!! GTTGAAGAAGGTGTTTAAAG+GGG - chr4_1:67564001-67564020 Msa0566460:CDS 35.0%
TAAAGGCAGATAAGCTATCA+AGG - chr4_1:67564197-67564216 Msa0566460:intron 35.0%
TGTGGAAGACCTAAAAATTG+TGG + chr4_1:67564283-67564302 None:intergenic 35.0%
!!! ACAATTTTTAGGTCTTCCAC+AGG - chr4_1:67564282-67564301 Msa0566460:CDS 35.0%
!!! CAATTTTTAGGTCTTCCACA+GGG - chr4_1:67564283-67564302 Msa0566460:CDS 35.0%
! ACTATTGCATTTGTTGACAC+TGG - chr4_1:67564352-67564371 Msa0566460:CDS 35.0%
!! CATCATTTTGGAAATGCTAG+CGG - chr4_1:67564733-67564752 Msa0566460:CDS 35.0%
!! ATCATTTTGGAAATGCTAGC+GGG - chr4_1:67564734-67564753 Msa0566460:CDS 35.0%
TTTGTAATCTGTTTATGGGG+CGG - chr4_1:67564820-67564839 Msa0566460:CDS 35.0%
! TAACATTTTAAACGGCAGTG+AGG + chr4_1:67564935-67564954 None:intergenic 35.0%
! GAGGTACTTTATAACCTTGA+AGG - chr4_1:67565045-67565064 Msa0566460:intron 35.0%
AAATACTGTTGACACTTGAC+AGG + chr4_1:67565071-67565090 None:intergenic 35.0%
TCATTTCATGCAAGCATGAT+TGG - chr4_1:67565229-67565248 Msa0566460:CDS 35.0%
AATGCTGCGAAAGATTGAAA+CGG + chr4_1:67565288-67565307 None:intergenic 35.0%
TGTTTATAAGGCCCTATACA+AGG - chr4_1:67565310-67565329 Msa0566460:CDS 35.0%
TCCTCCAAATTCCTTGTATA+GGG + chr4_1:67565324-67565343 None:intergenic 35.0%
ATCCTCCAAATTCCTTGTAT+AGG + chr4_1:67565325-67565344 None:intergenic 35.0%
TGTCTGTCTTTATATGTACC+TGG + chr4_1:67565376-67565395 None:intergenic 35.0%
TAACACATACTTAAGGAAGG+AGG + chr4_1:67565508-67565527 None:intergenic 35.0%
AAGAAAGTTGCAATATCAGG+AGG + chr4_1:67565918-67565937 None:intergenic 35.0%
TAAAGGATGACATGCTCATA+GGG + chr4_1:67566022-67566041 None:intergenic 35.0%
! TGTAAAGATCCATGGACTAA+AGG + chr4_1:67566039-67566058 None:intergenic 35.0%
AGTCCATGGATCTTTACAAT+TGG - chr4_1:67566041-67566060 Msa0566460:CDS 35.0%
GGAAATAATGCGACTATACT+TGG - chr4_1:67566107-67566126 Msa0566460:CDS 35.0%
CAACGAGAGAAATTCAAAGA+AGG + chr4_1:67566246-67566265 None:intergenic 35.0%
! TACTTGATGATCCCTTAAAC+TGG - chr4_1:67566372-67566391 Msa0566460:intron 35.0%
TTGTTATAGGCAACCAAAAC+TGG + chr4_1:67566442-67566461 None:intergenic 35.0%
AATACTGCTGAATTCATCCA+TGG - chr4_1:67566471-67566490 Msa0566460:intron 35.0%
! TCTTTTATTACTTTCCCAGC+TGG - chr4_1:67566588-67566607 Msa0566460:intron 35.0%
! GTTCAATAAAGATTTGGTCC+AGG - chr4_1:67566719-67566738 Msa0566460:intron 35.0%
! TCAATAAAGATTTGGTCCAG+GGG - chr4_1:67566721-67566740 Msa0566460:intron 35.0%
! CTGGGAATTTTCATTGGAAT+TGG + chr4_1:67566888-67566907 None:intergenic 35.0%
!! GCACCATCCATTTTTCATAT+TGG - chr4_1:67566941-67566960 Msa0566460:intron 35.0%
GCAGAGTAATACATAACACT+TGG + chr4_1:67567157-67567176 None:intergenic 35.0%
TTCAAAATGTCAGCTTCATG+AGG + chr4_1:67567208-67567227 None:intergenic 35.0%
!! TTCTACAGTTCTAGACTACA+CGG - chr4_1:67567915-67567934 Msa0566460:CDS 35.0%
!! AACCTTGCTATTGTGATTGA+GGG + chr4_1:67567994-67568013 None:intergenic 35.0%
TTCTCTGAACTACTCTAGAT+TGG + chr4_1:67568020-67568039 None:intergenic 35.0%
! ATTGGGTTGTTTGGTAATCA+AGG - chr4_1:67568210-67568229 Msa0566460:intron 35.0%
!! ATTTTAACGATGACAGACAC+AGG + chr4_1:67568252-67568271 None:intergenic 35.0%
TCTCACTGAGAAAATTAGCA+TGG - chr4_1:67568271-67568290 Msa0566460:intron 35.0%
CCGAATAGAAATAGTTGAGA+TGG - chr4_1:67568384-67568403 Msa0566460:intron 35.0%
TAATTGTTTCGGTACACACT+TGG - chr4_1:67568420-67568439 Msa0566460:intron 35.0%
AATTGTTTCGGTACACACTT+GGG - chr4_1:67568421-67568440 Msa0566460:CDS 35.0%
TCTAGAGGTGATTAAACTAG+AGG - chr4_1:67568535-67568554 Msa0566460:CDS 35.0%
TCTGCAGAAATTGGATAAAG+AGG - chr4_1:67568560-67568579 Msa0566460:CDS 35.0%
! GCTCTTCCTCATTTGTGTTT+TGG + chr4_1:67563362-67563381 None:intergenic 40.0%
! ACCCTGATAATGAGAAGTAG+GGG + chr4_1:67563497-67563516 None:intergenic 40.0%
! CACCCTGATAATGAGAAGTA+GGG + chr4_1:67563498-67563517 None:intergenic 40.0%
! TCACCCTGATAATGAGAAGT+AGG + chr4_1:67563499-67563518 None:intergenic 40.0%
GTTTATAACCACTTCAGACG+CGG - chr4_1:67563529-67563548 Msa0566460:three_prime_UTR 40.0%
!! TTACCTTGGTTTGTGAAGTC+TGG + chr4_1:67563569-67563588 None:intergenic 40.0%
ACATCATACAAACCTGCTGT+TGG + chr4_1:67564088-67564107 None:intergenic 40.0%
!!! AGAAGTGTCCAATGTGGTTT+TGG - chr4_1:67564225-67564244 Msa0566460:intron 40.0%
TAAAAATTGTGGAGTGTGCG+TGG + chr4_1:67564272-67564291 None:intergenic 40.0%
! ACGCACACTCCACAATTTTT+AGG - chr4_1:67564271-67564290 Msa0566460:CDS 40.0%
! TCAGCAAAACTAGGGTGTTT+AGG + chr4_1:67564385-67564404 None:intergenic 40.0%
AGTTGAGTCAAACATTCCTC+TGG + chr4_1:67564539-67564558 None:intergenic 40.0%
AGGAATGTTTGACTCAACTG+AGG - chr4_1:67564540-67564559 Msa0566460:intron 40.0%
AACATAGCTTCTATTGCAGC+TGG - chr4_1:67564679-67564698 Msa0566460:intron 40.0%
TTGGTACTTAGTACTTGGCA+GGG - chr4_1:67564971-67564990 Msa0566460:intron 40.0%
!! TCGCAGCATTGCTGTTTATA+AGG - chr4_1:67565298-67565317 Msa0566460:CDS 40.0%
AAGGCCCTATACAAGGAATT+TGG - chr4_1:67565317-67565336 Msa0566460:CDS 40.0%
CAAGGAATTTGGAGGATTTG+CGG - chr4_1:67565328-67565347 Msa0566460:CDS 40.0%
GGACACGACTTGAATATGAA+CGG + chr4_1:67565487-67565506 None:intergenic 40.0%
!! TTTTGAAGGGATCATATGGG+AGG + chr4_1:67565766-67565785 None:intergenic 40.0%
GCTTGTCAATCACTCCAAAT+AGG - chr4_1:67565889-67565908 Msa0566460:CDS 40.0%
GACAACAATGCCATGTCTAT+TGG + chr4_1:67565945-67565964 None:intergenic 40.0%
TTGTTGTCAGCTACAAAAGC+TGG - chr4_1:67565957-67565976 Msa0566460:CDS 40.0%
!! ATTTTTGTTGTGCAAGCTGC+TGG - chr4_1:67565981-67566000 Msa0566460:CDS 40.0%
AAAGGATGACATGCTCATAG+GGG + chr4_1:67566021-67566040 None:intergenic 40.0%
CTAAAGGATGACATGCTCAT+AGG + chr4_1:67566023-67566042 None:intergenic 40.0%
GCACCAATTGTAAAGATCCA+TGG + chr4_1:67566047-67566066 None:intergenic 40.0%
AATGCGACTATACTTGGAGT+TGG - chr4_1:67566113-67566132 Msa0566460:CDS 40.0%
GAAGTCATGTATAGCTAACC+AGG + chr4_1:67566168-67566187 None:intergenic 40.0%
!! CAGATTCTTGGCTGTTTCTA+AGG + chr4_1:67566808-67566827 None:intergenic 40.0%
CCATTCACAGAAGGATTCAT+GGG + chr4_1:67566852-67566871 None:intergenic 40.0%
ACCATTCACAGAAGGATTCA+TGG + chr4_1:67566853-67566872 None:intergenic 40.0%
AGCTGAAAACCATTCACAGA+AGG + chr4_1:67566861-67566880 None:intergenic 40.0%
GTTATGTATTACTCTGCCAG+AGG - chr4_1:67567160-67567179 Msa0566460:intron 40.0%
TCGCTCCTGGAAGTTTAATA+TGG - chr4_1:67567239-67567258 Msa0566460:CDS 40.0%
CGCTCCTGGAAGTTTAATAT+GGG - chr4_1:67567240-67567259 Msa0566460:CDS 40.0%
! GAAGTTTAATATGGGCTGCT+TGG - chr4_1:67567248-67567267 Msa0566460:CDS 40.0%
CTACTGCAGCATTAAATCCA+GGG - chr4_1:67567701-67567720 Msa0566460:CDS 40.0%
CTTGAATCAAAAAGCAACCC+TGG + chr4_1:67567721-67567740 None:intergenic 40.0%
TTCAACAACGGTTGCAGTAT+AGG - chr4_1:67567810-67567829 Msa0566460:intron 40.0%
!! TCTACAGTTCTAGACTACAC+GGG - chr4_1:67567916-67567935 Msa0566460:CDS 40.0%
!! CAACCTTGCTATTGTGATTG+AGG + chr4_1:67567995-67568014 None:intergenic 40.0%
! ACTTTTACTGAAACCCCGTA+TGG + chr4_1:67568093-67568112 None:intergenic 40.0%
TAAGACTTGTCTCTCTCCAT+TGG + chr4_1:67568139-67568158 None:intergenic 40.0%
! TTTGGAAGGATTGGGTTGTT+TGG - chr4_1:67568201-67568220 Msa0566460:intron 40.0%
ACACCTTAATGCTACACAAC+TGG - chr4_1:67568335-67568354 Msa0566460:intron 40.0%
CTAGAGGATTCTGCAGAAAT+TGG - chr4_1:67568551-67568570 Msa0566460:CDS 40.0%
AGTGGCACTGTTGTGTTTCT+TGG - chr4_1:67563399-67563418 Msa0566460:three_prime_UTR 45.0%
GTGGCACTGTTGTGTTTCTT+GGG - chr4_1:67563400-67563419 Msa0566460:three_prime_UTR 45.0%
TGGCACTGTTGTGTTTCTTG+GGG - chr4_1:67563401-67563420 Msa0566460:three_prime_UTR 45.0%
AGCCCCTACTTCTCATTATC+AGG - chr4_1:67563492-67563511 Msa0566460:three_prime_UTR 45.0%
GCCCCTACTTCTCATTATCA+GGG - chr4_1:67563493-67563512 Msa0566460:three_prime_UTR 45.0%
GAACCAGACTTCACAAACCA+AGG - chr4_1:67563563-67563582 Msa0566460:three_prime_UTR 45.0%
! GTGAAAGGAGTGCATTACCT+TGG + chr4_1:67563583-67563602 None:intergenic 45.0%
ATCTGTGCTATGATGGCAAC+CGG - chr4_1:67563741-67563760 Msa0566460:CDS 45.0%
! TGTGCTTGTTAACCAACAGC+AGG - chr4_1:67564073-67564092 Msa0566460:CDS 45.0%
!! GAGAAGAGAAGTGTCCAATG+TGG - chr4_1:67564219-67564238 Msa0566460:intron 45.0%
GAGCTTGGTTTCAATCAGGT+GGG - chr4_1:67564305-67564324 Msa0566460:CDS 45.0%
ATCCATTCAATGCTCCTGCT+TGG - chr4_1:67564419-67564438 Msa0566460:intron 45.0%
!! AACCAAGCAGGAGCATTGAA+TGG + chr4_1:67564424-67564443 None:intergenic 45.0%
!!! AATGCTCCTGCTTGGTTTTG+TGG - chr4_1:67564427-67564446 Msa0566460:intron 45.0%
AAAATCCGGAGTAACCTCAC+AGG + chr4_1:67564455-67564474 None:intergenic 45.0%
! GTTACTCCGGATTTTCCATC+TGG - chr4_1:67564460-67564479 Msa0566460:intron 45.0%
CACGAACCAGATGGAAAATC+CGG + chr4_1:67564469-67564488 None:intergenic 45.0%
! TTCCATCTGGTTCGTGCAAT+AGG - chr4_1:67564473-67564492 Msa0566460:intron 45.0%
TTCCTATTGCACGAACCAGA+TGG + chr4_1:67564478-67564497 None:intergenic 45.0%
TCGTGCAATAGGAAGCTTGT+TGG - chr4_1:67564484-67564503 Msa0566460:intron 45.0%
! CGTGCAATAGGAAGCTTGTT+GGG - chr4_1:67564485-67564504 Msa0566460:intron 45.0%
!! GTGCAATAGGAAGCTTGTTG+GGG - chr4_1:67564486-67564505 Msa0566460:intron 45.0%
CCATGTCCATCACCATCAAA+GGG + chr4_1:67564577-67564596 None:intergenic 45.0%
TCCATGTCCATCACCATCAA+AGG + chr4_1:67564578-67564597 None:intergenic 45.0%
TCTATTGCAGCTGGAAACCA+TGG - chr4_1:67564688-67564707 Msa0566460:intron 45.0%
TGGAAACCATGGAATTCCAG+TGG - chr4_1:67564699-67564718 Msa0566460:intron 45.0%
CAACAACCACTGGAATTCCA+TGG + chr4_1:67564708-67564727 None:intergenic 45.0%
GAATTCCAGTGGTTGTTGCT+GGG - chr4_1:67564710-67564729 Msa0566460:CDS 45.0%
! GTTGTTGCTGGGCATCATTT+TGG - chr4_1:67564721-67564740 Msa0566460:CDS 45.0%
!! TTTTGGAAATGCTAGCGGGA+TGG - chr4_1:67564738-67564757 Msa0566460:CDS 45.0%
GTTGGTACTTAGTACTTGGC+AGG - chr4_1:67564970-67564989 Msa0566460:intron 45.0%
TGGTACTTAGTACTTGGCAG+GGG - chr4_1:67564972-67564991 Msa0566460:intron 45.0%
GCCCTATACAAGGAATTTGG+AGG - chr4_1:67565320-67565339 Msa0566460:CDS 45.0%
TGTTGTTGCAGCTATTGACC+AGG - chr4_1:67565355-67565374 Msa0566460:CDS 45.0%
CACGACTTGAATATGAACGG+TGG + chr4_1:67565484-67565503 None:intergenic 45.0%
! GTGTTTTATCGAGGTACGCA+CGG - chr4_1:67565696-67565715 Msa0566460:intron 45.0%
ATATCAGGAGGACGCCTATT+TGG + chr4_1:67565906-67565925 None:intergenic 45.0%
TGCAAGCTGCTGGAAATACT+GGG - chr4_1:67565991-67566010 Msa0566460:CDS 45.0%
GCATGTCATCCTTTAGTCCA+TGG - chr4_1:67566027-67566046 Msa0566460:CDS 45.0%
ATAAACTCGATCGTGAGAGG+TGG + chr4_1:67566069-67566088 None:intergenic 45.0%
GCTATAAACTCGATCGTGAG+AGG + chr4_1:67566072-67566091 None:intergenic 45.0%
TACACATTAAGAGGTTCCCC+TGG + chr4_1:67566740-67566759 None:intergenic 45.0%
!! TTCTAAGGCCTGGTTGATAC+TGG + chr4_1:67566793-67566812 None:intergenic 45.0%
CCCATGAATCCTTCTGTGAA+TGG - chr4_1:67566849-67566868 Msa0566460:intron 45.0%
GAAAAATGGATGGTGCACCT+TGG + chr4_1:67566937-67566956 None:intergenic 45.0%
GCTGTTGCTAGCATTAATGG+TGG - chr4_1:67567103-67567122 Msa0566460:intron 45.0%
GCAGCCCATATTAAACTTCC+AGG + chr4_1:67567247-67567266 None:intergenic 45.0%
! AATGATGTCTGGGACAAGCA+TGG - chr4_1:67567472-67567491 Msa0566460:CDS 45.0%
ATGGCAGCAGGACTGAAATT+GGG + chr4_1:67567544-67567563 None:intergenic 45.0%
AATGGCAGCAGGACTGAAAT+TGG + chr4_1:67567545-67567564 None:intergenic 45.0%
AATTTCAGTCCTGCTGCCAT+TGG - chr4_1:67567544-67567563 Msa0566460:CDS 45.0%
CGTCTCTGTATGACAACAGT+GGG - chr4_1:67567587-67567606 Msa0566460:CDS 45.0%
CAACAGTGGGAAGCCAATAA+TGG - chr4_1:67567600-67567619 Msa0566460:CDS 45.0%
TATGACCGCTGAGCCATTAT+TGG + chr4_1:67567616-67567635 None:intergenic 45.0%
!! GATTGGTTTAGCTCTGGTGA+GGG + chr4_1:67567640-67567659 None:intergenic 45.0%
!! AGATTGGTTTAGCTCTGGTG+AGG + chr4_1:67567641-67567660 None:intergenic 45.0%
AAACCACTCCCCATGTCAAA+GGG + chr4_1:67567673-67567692 None:intergenic 45.0%
AAAACCACTCCCCATGTCAA+AGG + chr4_1:67567674-67567693 None:intergenic 45.0%
GCTACTGCAGCATTAAATCC+AGG - chr4_1:67567700-67567719 Msa0566460:CDS 45.0%
TGCCCTCAATCACAATAGCA+AGG - chr4_1:67567989-67568008 Msa0566460:CDS 45.0%
GTTGGTTGGAGTTCTCCATA+CGG - chr4_1:67568075-67568094 Msa0566460:intron 45.0%
TTGGTTGGAGTTCTCCATAC+GGG - chr4_1:67568076-67568095 Msa0566460:intron 45.0%
TCGCCAGTTGTGTAGCATTA+AGG + chr4_1:67568341-67568360 None:intergenic 45.0%
! CAGCTCTGGTTATGTTGACT+GGG - chr4_1:67568451-67568470 Msa0566460:CDS 45.0%
GATTGAAACCAAGCTCCCTG+TGG + chr4_1:67564301-67564320 None:intergenic 50.0%
CAGGGAGCTTGGTTTCAATC+AGG - chr4_1:67564301-67564320 Msa0566460:CDS 50.0%
GGAGCTTGGTTTCAATCAGG+TGG - chr4_1:67564304-67564323 Msa0566460:CDS 50.0%
! TCAGGTGGGTTTGAAACTGC+TGG - chr4_1:67564319-67564338 Msa0566460:CDS 50.0%
! GGGTTTGAAACTGCTGGAGA+AGG - chr4_1:67564325-67564344 Msa0566460:CDS 50.0%
!!! TTGGTTTTGTGGCACCTGTG+AGG - chr4_1:67564438-67564457 Msa0566460:intron 50.0%
GCAGCATCTGCTATAACCAG+AGG - chr4_1:67564520-67564539 Msa0566460:CDS 50.0%
GACAGTGCTTCTCCCTTTGA+TGG - chr4_1:67564562-67564581 Msa0566460:intron 50.0%
!! GCTTCTCCCTTTGATGGTGA+TGG - chr4_1:67564568-67564587 Msa0566460:intron 50.0%
!! CCCTTTGATGGTGATGGACA+TGG - chr4_1:67564574-67564593 Msa0566460:intron 50.0%
GGAATTCCAGTGGTTGTTGC+TGG - chr4_1:67564709-67564728 Msa0566460:CDS 50.0%
TTAGTACTTGGCAGGGGTCT+TGG - chr4_1:67564978-67564997 Msa0566460:intron 50.0%
TGACACTTGACAGGCCTTCA+AGG + chr4_1:67565062-67565081 None:intergenic 50.0%
GTGCAAGCTGCTGGAAATAC+TGG - chr4_1:67565990-67566009 Msa0566460:CDS 50.0%
GATGACATGCTCATAGGGGA+AGG + chr4_1:67566017-67566036 None:intergenic 50.0%
TGTTCTCAGGTGTACCAGCT+GGG + chr4_1:67566605-67566624 None:intergenic 50.0%
TGGTCTCTCCAGTATCAACC+AGG - chr4_1:67566782-67566801 Msa0566460:intron 50.0%
!! TCTTGGCTGTTTCTAAGGCC+TGG + chr4_1:67566803-67566822 None:intergenic 50.0%
GGGGCTGTTGCTAGCATTAA+TGG - chr4_1:67567100-67567119 Msa0566460:intron 50.0%
GAAGACTGTCCTCTGGATCT+GGG + chr4_1:67567186-67567205 None:intergenic 50.0%
TCATGAGGAAGACTGTCCTC+TGG + chr4_1:67567193-67567212 None:intergenic 50.0%
AAACCAAATCTGGTCGCTCC+TGG - chr4_1:67567226-67567245 Msa0566460:intron 50.0%
GTTGTCATACAGAGACGCTG+TGG + chr4_1:67567584-67567603 None:intergenic 50.0%
GCGTCTCTGTATGACAACAG+TGG - chr4_1:67567586-67567605 Msa0566460:CDS 50.0%
GGAAGCCAATAATGGCTCAG+CGG - chr4_1:67567608-67567627 Msa0566460:CDS 50.0%
!! GCTGGAGATTGGTTTAGCTC+TGG + chr4_1:67567646-67567665 None:intergenic 50.0%
CAAAGGGAGTTGCTGGAGAT+TGG + chr4_1:67567657-67567676 None:intergenic 50.0%
TCCAGCAACTCCCTTTGACA+TGG - chr4_1:67567660-67567679 Msa0566460:CDS 50.0%
CCAGCAACTCCCTTTGACAT+GGG - chr4_1:67567661-67567680 Msa0566460:CDS 50.0%
CAGCAACTCCCTTTGACATG+GGG - chr4_1:67567662-67567681 Msa0566460:CDS 50.0%
TGGTTGGAGTTCTCCATACG+GGG - chr4_1:67568077-67568096 Msa0566460:intron 50.0%
TTGGCAAGAGAGAAGCGAGT+TGG + chr4_1:67568120-67568139 None:intergenic 50.0%
ACTCGCTTCTCTCTTGCCAA+TGG - chr4_1:67568120-67568139 Msa0566460:intron 50.0%
AACAGCTCAACTGCCAGCTT+TGG - chr4_1:67568183-67568202 Msa0566460:intron 50.0%
!! ACTGCCAGCTTTGGAAGGAT+TGG - chr4_1:67568192-67568211 Msa0566460:intron 50.0%
!! CTGCCAGCTTTGGAAGGATT+GGG - chr4_1:67568193-67568212 Msa0566460:intron 50.0%
CAACCCAATCCTTCCAAAGC+TGG + chr4_1:67568199-67568218 None:intergenic 50.0%
ACTTGGGCTATATCCAGCTC+TGG - chr4_1:67568437-67568456 Msa0566460:CDS 50.0%
CCAGTCAACATAACCAGAGC+TGG + chr4_1:67568453-67568472 None:intergenic 50.0%
! CCAGCTCTGGTTATGTTGAC+TGG - chr4_1:67568450-67568469 Msa0566460:CDS 50.0%
TAGGTCTTCCACAGGGAGCT+TGG - chr4_1:67564290-67564309 Msa0566460:CDS 55.0%
! CAGGTGCCACAAAACCAAGC+AGG + chr4_1:67564436-67564455 None:intergenic 55.0%
TGGCACCTGTGAGGTTACTC+CGG - chr4_1:67564447-67564466 Msa0566460:intron 55.0%
TGATGCCCAGCAACAACCAC+TGG + chr4_1:67564718-67564737 None:intergenic 55.0%
GTGTTCTCAGGTGTACCAGC+TGG + chr4_1:67566606-67566625 None:intergenic 55.0%
GGAAGACTGTCCTCTGGATC+TGG + chr4_1:67567187-67567206 None:intergenic 55.0%
CTTCCAGGAGCGACCAGATT+TGG + chr4_1:67567232-67567251 None:intergenic 55.0%
ATGGCTGCACCTCATGTTGC+TGG - chr4_1:67567491-67567510 Msa0566460:CDS 55.0%
GCAGCAAGACCAGCAACATG+AGG + chr4_1:67567503-67567522 None:intergenic 55.0%
! GGTGGAAAGCGCAGATCCAA+TGG + chr4_1:67567563-67567582 None:intergenic 55.0%
GTCATACAGAGACGCTGTGG+TGG + chr4_1:67567581-67567600 None:intergenic 55.0%
CCCATGTCAAAGGGAGTTGC+TGG + chr4_1:67567664-67567683 None:intergenic 55.0%
ACTCCCTTTGACATGGGGAG+TGG - chr4_1:67567667-67567686 Msa0566460:CDS 55.0%
!! GCTCAACTGCCAGCTTTGGA+AGG - chr4_1:67568187-67568206 Msa0566460:intron 55.0%
TGCTACACAACTGGCGAGTG+TGG - chr4_1:67568344-67568363 Msa0566460:intron 55.0%
!! ACTTCAGACGCGGTGCTGCT+GGG - chr4_1:67563539-67563558 Msa0566460:three_prime_UTR 60.0%
AGCGCAGATCCAATGGCAGC+AGG + chr4_1:67567556-67567575 None:intergenic 60.0%
GCTGGCAGTTGAGCTGTTGC+TGG + chr4_1:67568181-67568200 None:intergenic 60.0%
CAGCAGCACCGCGTCTGAAG+TGG + chr4_1:67563540-67563559 None:intergenic 65.0%
!! CACTTCAGACGCGGTGCTGC+TGG - chr4_1:67563538-67563557 Msa0566460:three_prime_UTR 65.0%
TGCCAGAGGCCCAGATCCAG+AGG - chr4_1:67567174-67567193 Msa0566460:intron 65.0%
GTCCTCTGGATCTGGGCCTC+TGG + chr4_1:67567179-67567198 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 67563337 67568668 67563337 ID=Msa0566460;Name=Msa0566460
chr4_1 mRNA 67563337 67568668 67563337 ID=Msa0566460-mRNA-1;Parent=Msa0566460;Name=Msa0566460-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.6|0.27|1|1|1|11|351|838
chr4_1 exon 67563337 67564136 67563337 ID=Msa0566460-mRNA-1:exon:22172;Parent=Msa0566460-mRNA-1
chr4_1 exon 67564266 67564418 67564266 ID=Msa0566460-mRNA-1:exon:22171;Parent=Msa0566460-mRNA-1
chr4_1 exon 67564493 67564546 67564493 ID=Msa0566460-mRNA-1:exon:22170;Parent=Msa0566460-mRNA-1
chr4_1 exon 67564701 67564971 67564701 ID=Msa0566460-mRNA-1:exon:22169;Parent=Msa0566460-mRNA-1
chr4_1 exon 67565067 67565398 67565067 ID=Msa0566460-mRNA-1:exon:22168;Parent=Msa0566460-mRNA-1
chr4_1 exon 67565862 67566144 67565862 ID=Msa0566460-mRNA-1:exon:22167;Parent=Msa0566460-mRNA-1
chr4_1 exon 67566629 67566701 67566629 ID=Msa0566460-mRNA-1:exon:22166;Parent=Msa0566460-mRNA-1
chr4_1 exon 67567232 67567327 67567232 ID=Msa0566460-mRNA-1:exon:22165;Parent=Msa0566460-mRNA-1
chr4_1 exon 67567406 67567803 67567406 ID=Msa0566460-mRNA-1:exon:22164;Parent=Msa0566460-mRNA-1
chr4_1 exon 67567911 67568070 67567911 ID=Msa0566460-mRNA-1:exon:22163;Parent=Msa0566460-mRNA-1
chr4_1 exon 67568421 67568668 67568421 ID=Msa0566460-mRNA-1:exon:22162;Parent=Msa0566460-mRNA-1
chr4_1 CDS 67568421 67568668 67568421 ID=Msa0566460-mRNA-1:cds;Parent=Msa0566460-mRNA-1
chr4_1 CDS 67567911 67568070 67567911 ID=Msa0566460-mRNA-1:cds;Parent=Msa0566460-mRNA-1
chr4_1 CDS 67567406 67567803 67567406 ID=Msa0566460-mRNA-1:cds;Parent=Msa0566460-mRNA-1
chr4_1 CDS 67567232 67567327 67567232 ID=Msa0566460-mRNA-1:cds;Parent=Msa0566460-mRNA-1
chr4_1 CDS 67566629 67566701 67566629 ID=Msa0566460-mRNA-1:cds;Parent=Msa0566460-mRNA-1
chr4_1 CDS 67565862 67566144 67565862 ID=Msa0566460-mRNA-1:cds;Parent=Msa0566460-mRNA-1
chr4_1 CDS 67565067 67565398 67565067 ID=Msa0566460-mRNA-1:cds;Parent=Msa0566460-mRNA-1
chr4_1 CDS 67564701 67564971 67564701 ID=Msa0566460-mRNA-1:cds;Parent=Msa0566460-mRNA-1
chr4_1 CDS 67564493 67564546 67564493 ID=Msa0566460-mRNA-1:cds;Parent=Msa0566460-mRNA-1
chr4_1 CDS 67564266 67564418 67564266 ID=Msa0566460-mRNA-1:cds;Parent=Msa0566460-mRNA-1
chr4_1 CDS 67563688 67564136 67563688 ID=Msa0566460-mRNA-1:cds;Parent=Msa0566460-mRNA-1
chr4_1 three_prime_UTR 67563337 67563687 67563337 ID=Msa0566460-mRNA-1:three_prime_utr;Parent=Msa0566460-mRNA-1
Gene Sequence

>Msa0566460

ATGTTTGGTGGGGCTTTGCATTCCAAAACACAAATGAGGAAGAGCACATATTGGGTACATTTAGTGGCACTGTTGTGTTTCTTGGGGATGCTTCTAATGCATTCTTCTTGTCAAGTTGATGCAACTACTGCTGTGTACATTGTTACTCTCAGACAAGCCCCTACTTCTCATTATCAGGGTGAGTTGAGCAGAGTTTATAACCACTTCAGACGCGGTGCTGCTGGGAGAACCAGACTTCACAAACCAAGACATCGAAATGTTACAAAGACAGATAAGAGACATGGTTTTAACATTGCACAAGTTCATGATTCTTTGTTGAAGAAGGTGTTTAAAGGGGAAAAGTATTTGAAACTCTATAGCTATCATTACTTGATCAATGGCTTTGCTGTGCTTGTTAACCAACAGCAGGCAGATAAGCTATCAAGGAGAAGAGAAGTGTCCAATGTGGTTTTGGATTTTTCTGTAAGAACTGCAACCACGCACACTCCACAATTTTTAGGTCTTCCACAGGGAGCTTGGTTTCAATCAGGTGGGTTTGAAACTGCTGGAGAAGGAATCACTATTGCATTTGTTGACACTGGCATTGATCCTAAACACCCTAGTTTTGCTGATGATAAATCTGAACATCCATTCAATGCTCCTGCTTGGTTTTGTGGCACCTGTGAGGTTACTCCGGATTTTCCATCTGGTTCGTGCAATAGGAAGCTTGTTGGGGCACGTCATTTTGCAGCATCTGCTATAACCAGAGGAATGTTTGACTCAACTGAGGACAGTGCTTCTCCCTTTGATGGTGATGGACATGGAACGAACATAGCTTCTATTGCAGCTGGAAACCATGGAATTCCAGTGGTTGTTGCTGGGCATCATTTTGGAAATGCTAGCGGGATGGCTCCTCGTTCACACATTGCTGTTTATAAGGCCCTATACAAGGAATTTGGAGGATTTGCGGCTGATGTTGTTGCAGCTATTGACCAGGCAGCTCAAGATAGAGTTGATATAATATGCTTGTCAATCACTCCAAATAGGCGTCCTCCTGATATTGCAACTTTCTTCAATCCAATAGACATGGCATTGTTGTCAGCTACAAAAGCTGGTATTTTTGTTGTGCAAGCTGCTGGAAATACTGGGCCTTCCCCTATGAGCATGTCATCCTTTAGTCCATGGATCTTTACAATTGGTGCCACCTCTCACGATCGAGTTTATAGCAACTCACTATTTCTTGGAAATAATGCGACTATACTTGGAGTTGGACTTGCACCTGGTACACCTGAGAACACAATGTACAAATTGATTCATGCACATCATGCTTTGAATGATGACACTACAATTGCTGATGATATGTATGTTGGTGAGTGTCAAGATGCAAGTAAGTTCAATAAAGATTTGGTCCAGGGGAACCTCTTAATGTGTAGCTATACAATGAGATTTGTGCTTGGTCTCTCCAGTATCAACCAGGCCTTAGAAACAGCCAAGAATCTGAGTGCTGCTGGTGTTGTTTTTCCCATGAATCCTTCTGTGAATGGTTTTCAGCTTAATCCAATTCCAATGAAAATTCCCAGCATAATAATTTCATTTGCAAATGATTCCAAGATATTACTAGAATACTACAATTCTTCACTTGAAAAAGACGGTACTTCAGAAAAAATTGTTAAACTTGGGGCTGTTGCTAGCATTAATGGTGGACTTACAGCGAGCTATAGTAATGTTTCCCCAAGTGTTATGTATTACTCTGCCAGAGGCCCAGATCCAGAGGACAGTCTTCCTCATGAAGCTGACATTTTGAAACCAAATCTGGTCGCTCCTGGAAGTTTAATATGGGCTGCTTGGAGTTCTGTTGCCACTGATTCAGATGAATTTCTAGGTGAAAATTTTGCAATGATGTCTGGGACAAGCATGGCTGCACCTCATGTTGCTGCGTCTCTGTATGACAACAGTGGGAAGCCAATAATGGCTCAGCGGTCATATCCCTCACCAGAGCTAAACCAATCTCCAGCAACTCCCTTTGACATGGGGAGTGGTTTTGTGAATGCTACTGCAGCATTAAATCCAGGGTTGCTTTTTGATTCAAGTTATGATGATTACATGTCTTTTCTATGTGGTATCAATGGTTCAGCTTCTACAGTTCTAGACTACACGGGTCAGAATTGTTTAAATTTTAACTCTACTGGATATGGCTCTGATCTAAACTTGCCCTCAATCACAATAGCAAGGTTGAACCAATCTAGAGTAGTTCAGAGAACATTACAAAACATTGCTGAAAATGAAACTTATAGTGTTGGTTGGAGTTCTCCATACGGGGTTTCAGTAAAAGTAACTCCAACTCGCTTCTCTCTTGCCAATGGAGAGAGACAAGTCTTATCTGTGATCTTCAATGCAACCAGCAACAGCTCAACTGCCAGCTTTGGAAGGATTGGGTTGTTTGGTAATCAAGGTCATGTAGTCAACATTCCTGTGTCTGTCATCGTTAAAATCTCACTGAGAAAATTAGCATGGTTAATGAAAATTAGCAAGTTATAA
Protein sequence

>Msa0566460

MFGGALHSKTQMRKSTYWVHLVALLCFLGMLLMHSSCQVDATTAVYIVTLRQAPTSHYQGELSRVYNHFRRGAAGRTRLHKPRHRNVTKTDKRHGFNIAQVHDSLLKKVFKGEKYLKLYSYHYLINGFAVLVNQQQADKLSRRREVSNVVLDFSVRTATTHTPQFLGLPQGAWFQSGGFETAGEGITIAFVDTGIDPKHPSFADDKSEHPFNAPAWFCGTCEVTPDFPSGSCNRKLVGARHFAASAITRGMFDSTEDSASPFDGDGHGTNIASIAAGNHGIPVVVAGHHFGNASGMAPRSHIAVYKALYKEFGGFAADVVAAIDQAAQDRVDIICLSITPNRRPPDIATFFNPIDMALLSATKAGIFVVQAAGNTGPSPMSMSSFSPWIFTIGATSHDRVYSNSLFLGNNATILGVGLAPGTPENTMYKLIHAHHALNDDTTIADDMYVGECQDASKFNKDLVQGNLLMCSYTMRFVLGLSSINQALETAKNLSAAGVVFPMNPSVNGFQLNPIPMKIPSIIISFANDSKILLEYYNSSLEKDGTSEKIVKLGAVASINGGLTASYSNVSPSVMYYSARGPDPEDSLPHEADILKPNLVAPGSLIWAAWSSVATDSDEFLGENFAMMSGTSMAAPHVAASLYDNSGKPIMAQRSYPSPELNQSPATPFDMGSGFVNATAALNPGLLFDSSYDDYMSFLCGINGSASTVLDYTGQNCLNFNSTGYGSDLNLPSITIARLNQSRVVQRTLQNIAENETYSVGWSSPYGVSVKVTPTRFSLANGERQVLSVIFNATSNSSTASFGRIGLFGNQGHVVNIPVSVIVKISLRKLAWLMKISKL*