AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0706070


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0706070 MtrunA17_Chr8g0385261 86.975 238 10 1 30 246 1 238 8.21e-144 408
Msa0706070 MtrunA17_Chr3g0131021 73.109 238 41 2 30 246 1 236 3.51e-116 340
Msa0706070 MtrunA17_Chr1g0157701 36.214 243 126 4 30 246 1 240 7.12e-40 145
Msa0706070 MtrunA17_Chr3g0125541 35.391 243 121 5 31 246 5 238 9.51e-37 135
Msa0706070 MtrunA17_Chr3g0139891 36.179 246 123 5 30 246 1 241 4.09e-35 132
Msa0706070 MtrunA17_Chr7g0244381 31.250 240 125 4 38 246 17 247 1.19e-31 122
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0706070 AT5G63640.1 60.744 242 66 4 30 246 1 238 8.99e-93 280
Msa0706070 AT5G63640.2 60.744 242 66 4 30 246 1 238 8.99e-93 280
Msa0706070 AT4G32760.3 35.391 243 128 3 30 246 1 240 5.47e-38 139
Msa0706070 AT1G21380.1 35.169 236 127 3 31 243 5 237 1.18e-37 138
Msa0706070 AT3G08790.1 33.197 244 127 5 30 246 1 235 1.80e-37 139
Msa0706070 AT4G32760.2 35.391 243 128 3 30 246 1 240 1.48e-36 136
Msa0706070 AT4G32760.1 35.391 243 128 3 30 246 1 240 1.53e-36 136
Msa0706070 AT1G76970.2 34.322 236 121 4 31 243 5 229 8.31e-34 127
Msa0706070 AT1G76970.3 34.322 236 121 4 31 243 5 229 8.31e-34 127
Msa0706070 AT1G76970.6 34.322 236 121 4 31 243 5 229 8.31e-34 127
Msa0706070 AT1G76970.1 34.322 236 121 4 31 243 5 229 8.31e-34 127
Msa0706070 AT1G76970.7 38.068 176 96 3 70 243 39 203 2.00e-29 114
Msa0706070 AT1G76970.4 38.068 176 96 3 70 243 39 203 2.00e-29 114
Msa0706070 AT2G38410.1 28.417 278 131 4 36 246 13 289 9.59e-27 108
Msa0706070 AT1G76970.5 40.789 152 77 3 94 243 1 141 1.37e-25 103
Msa0706070 AT5G01760.1 25.738 237 150 3 35 246 26 261 5.46e-21 91.7

Find 51 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTACATTATTGGTCTTATT+TGG 0.184800 4_4:+78958575 None:intergenic
TGTGAAAATTGTAAAGAAAA+AGG 0.233392 4_4:-78959329 Msa0706070:intron
ACAAATATTAATGTTTGATT+TGG 0.256334 4_4:+78961868 None:intergenic
CCAATACATTACTAGCCTTT+TGG 0.257906 4_4:+78957988 None:intergenic
AGACCAATAATGTACCAAAA+AGG 0.269071 4_4:-78958568 Msa0706070:CDS
TTGGCTCACCTGAGGATGTT+TGG 0.311784 4_4:+78957932 None:intergenic
ACATCTCTTGGTGGTGCTTC+GGG 0.312345 4_4:-78959165 Msa0706070:CDS
AACATCTCTTGGTGGTGCTT+CGG 0.321289 4_4:-78959166 Msa0706070:CDS
TGCAGTCAGATTTGCCTGTC+AGG 0.326597 4_4:-78959221 Msa0706070:intron
TGCATCTTGTGATGGCTTCT+AGG 0.356756 4_4:-78957406 None:intergenic
AGCAATAATCACCTAGATTC+AGG 0.368933 4_4:+78958488 None:intergenic
GTCTTATTTGGTTGTGAACT+AGG 0.388786 4_4:+78958587 None:intergenic
CCAAAAGGCTAGTAATGTAT+TGG 0.403129 4_4:-78957988 Msa0706070:CDS
TAAAGCATATTATGACTTAG+TGG 0.409963 4_4:-78959124 Msa0706070:intron
GTGAACTAGGACGATTTGAT+TGG 0.413910 4_4:+78958600 None:intergenic
TGGACAACTTGAGCTCTTTG+AGG 0.440607 4_4:+78958620 None:intergenic
AGGGTTTATCAGTGCATCCT+TGG 0.460541 4_4:-78961682 Msa0706070:CDS
CCAACACTATTCCTGAATCT+AGG 0.467682 4_4:-78958499 Msa0706070:intron
AAAAGGAATTCTTCTGAGAA+AGG 0.470327 4_4:-78961762 Msa0706070:five_prime_UTR
AGAAATATTCGCTCCCTGAC+AGG 0.475315 4_4:+78959207 None:intergenic
AGAAACTGTCCGAAATTGAT+TGG 0.483320 4_4:-78960677 Msa0706070:CDS
ATGTTTGTGTTGCATCTAGT+AGG 0.488493 4_4:+78959184 None:intergenic
CAACCTCTCCACGTCTAAGT+AGG 0.499339 4_4:+78958537 None:intergenic
GATGCAACACAAACATCTCT+TGG 0.521145 4_4:-78959177 Msa0706070:CDS
AGGAGATCATATTCATGAGC+AGG 0.524525 4_4:-78959380 Msa0706070:CDS
GCAGTCAGATTTGCCTGTCA+GGG 0.530752 4_4:-78959220 Msa0706070:intron
AACATTGCTCAACAAGGTCG+AGG 0.539455 4_4:+78957450 None:intergenic
CCTAGATTCAGGAATAGTGT+TGG 0.540846 4_4:+78958499 None:intergenic
TGACAAATTGACAGCTTCAA+CGG 0.550766 4_4:+78961833 None:intergenic
AATTAGTTGCTCGTGATCAA+AGG 0.552655 4_4:-78960632 Msa0706070:intron
TGTTGCAGCATTGACTAGCT+CGG 0.566812 4_4:+78960704 None:intergenic
AACCTCTCCACGTCTAAGTA+GGG 0.567300 4_4:+78958538 None:intergenic
AATGTTCATTTCAAAAGCAG+AGG 0.574470 4_4:-78957433 Msa0706070:CDS
TGTTGATGCCAAACATCCTC+AGG 0.576914 4_4:-78957940 Msa0706070:intron
TGTTTATGTAGAAAGTAAGA+TGG 0.578059 4_4:-78960730 Msa0706070:intron
CATTAATATTTGTATGTGCG+AGG 0.579599 4_4:-78961858 Msa0706070:five_prime_UTR
GAGGGTAATGCATCTTGTGA+TGG 0.597998 4_4:-78957414 Msa0706070:CDS
GTTTGGCATCAACAGCATCA+AGG 0.606783 4_4:+78957949 None:intergenic
CTCTCCACGTCTAAGTAGGG+AGG 0.609788 4_4:+78958541 None:intergenic
GAAATGTTGATGAACAACAT+AGG 0.610002 4_4:-78959400 Msa0706070:CDS
CTCCCTACTTAGACGTGGAG+AGG 0.610649 4_4:-78958540 Msa0706070:CDS
ATGTTCATTTCAAAAGCAGA+GGG 0.612135 4_4:-78957432 Msa0706070:CDS
GCAACACAAACATCTCTTGG+TGG 0.618529 4_4:-78959174 Msa0706070:CDS
TCTCCACGTCTAAGTAGGGA+GGG 0.629427 4_4:+78958542 None:intergenic
AGATCATATTCATGAGCAGG+TGG 0.642262 4_4:-78959377 Msa0706070:CDS
ACATTGCTCAACAAGGTCGA+GGG 0.648714 4_4:+78957451 None:intergenic
GAAATGAACATTGCTCAACA+AGG 0.653618 4_4:+78957444 None:intergenic
AGATGACAAGAATGAAACCA+AGG 0.655944 4_4:+78961665 None:intergenic
TAATATGCTTTATAATACTG+CGG 0.657958 4_4:+78959135 None:intergenic
GAGCCCTCCCTACTTAGACG+TGG 0.668092 4_4:-78958545 Msa0706070:CDS
TCTTTGAGGAAATTGTACCC+CGG 0.711322 4_4:+78958634 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATAATTATATTTATA+TGG - chr4_4:78957886-78957905 Msa0706070:intron 0.0%
!! AAAATTAAATAGAAAACATT+TGG - chr4_4:78959129-78959148 Msa0706070:CDS 10.0%
!! AATAAATAACAAATTAGTAT+TGG + chr4_4:78960613-78960632 None:intergenic 10.0%
!! ACAAATATTAATGTTTGATT+TGG + chr4_4:78957446-78957465 None:intergenic 15.0%
!!! TTGAAATGTTAAATCTTTTT+AGG - chr4_4:78957609-78957628 Msa0706070:intron 15.0%
!!! TGAAATGTTAAATCTTTTTA+GGG - chr4_4:78957610-78957629 Msa0706070:intron 15.0%
!! TTCCTTCTTATATATATATA+TGG - chr4_4:78958732-78958751 Msa0706070:intron 15.0%
!!! TTTTATACCATAATTATAGA+TGG - chr4_4:78960498-78960517 Msa0706070:intron 15.0%
!! TAAAAAAGCCATTAAAAAAA+AGG + chr4_4:78960589-78960608 None:intergenic 15.0%
!! AAAAAAAAAATGTAACAATG+TGG + chr4_4:78960930-78960949 None:intergenic 15.0%
!! ATAAGAATAATTATTTAGTC+TGG - chr4_4:78961015-78961034 Msa0706070:intron 15.0%
!! TAAGAATAATTATTTAGTCT+GGG - chr4_4:78961016-78961035 Msa0706070:intron 15.0%
!! TTACTAAAAAAGTTAAAACA+TGG + chr4_4:78961602-78961621 None:intergenic 15.0%
!! ATTATATTTATATGGTGAAG+TGG - chr4_4:78957894-78957913 Msa0706070:intron 20.0%
!! TGGAAGATGATTATAATAAT+AGG - chr4_4:78957914-78957933 Msa0706070:intron 20.0%
!! GCTGCAAATTATTATAAATA+GGG + chr4_4:78957992-78958011 None:intergenic 20.0%
!! TGCTGCAAATTATTATAAAT+AGG + chr4_4:78957993-78958012 None:intergenic 20.0%
!!! ATTTTTCATCCAATCAATTT+CGG + chr4_4:78958646-78958665 None:intergenic 20.0%
!! CACCATATATATATATAAGA+AGG + chr4_4:78958737-78958756 None:intergenic 20.0%
!!! GCTATATTGTCTTATTTTTT+TGG - chr4_4:78958867-78958886 Msa0706070:intron 20.0%
!! ATATGGAAAATGCAATTAAT+TGG + chr4_4:78959030-78959049 None:intergenic 20.0%
!! TGAAAAAGAAATACACAATT+TGG + chr4_4:78959061-78959080 None:intergenic 20.0%
!!! ATTTTGTTTTATTGATGTTC+AGG - chr4_4:78959338-78959357 Msa0706070:CDS 20.0%
!!! AATTTATTGGAAACAACTTT+TGG - chr4_4:78959501-78959520 Msa0706070:intron 20.0%
!! ACACATAAGCATTTATATAA+CGG - chr4_4:78959651-78959670 Msa0706070:intron 20.0%
!!! TTTACAATTTTCACAAGAAT+AGG + chr4_4:78959977-78959996 None:intergenic 20.0%
!! TGTGAAAATTGTAAAGAAAA+AGG - chr4_4:78959982-78960001 Msa0706070:intron 20.0%
!! TAATATGCTTTATAATACTG+CGG + chr4_4:78960179-78960198 None:intergenic 20.0%
!!! TTTTTTACTGCATATTATGT+GGG - chr4_4:78960322-78960341 Msa0706070:intron 20.0%
!! TACTTATATCATATACCAAA+CGG + chr4_4:78960541-78960560 None:intergenic 20.0%
!! TTTGGTATATGATATAAGTA+TGG - chr4_4:78960541-78960560 Msa0706070:intron 20.0%
!!! TACACAATCCTTTTTTTTAA+TGG - chr4_4:78960578-78960597 Msa0706070:intron 20.0%
!! AGTAAAACACAATTTACTAT+TGG + chr4_4:78960645-78960664 None:intergenic 20.0%
!! AAGAATAATTATTTAGTCTG+GGG - chr4_4:78961017-78961036 Msa0706070:intron 20.0%
!! TAGTTAAAAGCTATTGTATT+TGG + chr4_4:78961068-78961087 None:intergenic 20.0%
!!! GTGAATTTTTAGTTACATTA+TGG + chr4_4:78961412-78961431 None:intergenic 20.0%
!!! AAAACTGTGAATTATTTTCT+AGG - chr4_4:78961819-78961838 Msa0706070:five_prime_UTR 20.0%
!!! AAACTGTGAATTATTTTCTA+GGG - chr4_4:78961820-78961839 Msa0706070:five_prime_UTR 20.0%
!! TTATAGCTTCTTTTAGCATA+TGG + chr4_4:78957507-78957526 None:intergenic 25.0%
! TTGAAAAACTGATATGAAGA+TGG + chr4_4:78957672-78957691 None:intergenic 25.0%
!! ATCTTCATATCAGTTTTTCA+AGG - chr4_4:78957671-78957690 Msa0706070:intron 25.0%
!! TCATCATTAAGTTTTTGCTT+TGG - chr4_4:78957762-78957781 Msa0706070:intron 25.0%
! TTATAAATAGGGAAAGTGAA+AGG + chr4_4:78957981-78958000 None:intergenic 25.0%
! TTCACACAAATTTAATTAGG+CGG + chr4_4:78958485-78958504 None:intergenic 25.0%
! GTGTTCACACAAATTTAATT+AGG + chr4_4:78958488-78958507 None:intergenic 25.0%
! TGTTTATGTAGAAAGTAAGA+TGG - chr4_4:78958581-78958600 Msa0706070:CDS 25.0%
! AAGGAAAAAAAAAACTTTGC+GGG + chr4_4:78958718-78958737 None:intergenic 25.0%
! GAAGGAAAAAAAAAACTTTG+CGG + chr4_4:78958719-78958738 None:intergenic 25.0%
!!! TTTCATCGTGTTTTACTTTT+GGG + chr4_4:78958788-78958807 None:intergenic 25.0%
!! ATTTCATCGTGTTTTACTTT+TGG + chr4_4:78958789-78958808 None:intergenic 25.0%
! ATGAGAAAAATATAAAAGGC+AGG + chr4_4:78958838-78958857 None:intergenic 25.0%
! GTGCATGAGAAAAATATAAA+AGG + chr4_4:78958842-78958861 None:intergenic 25.0%
!! AGTGGGTATTTCTATAATAT+TGG - chr4_4:78958966-78958985 Msa0706070:intron 25.0%
! AAACAACATTATCATTCATG+AGG + chr4_4:78959000-78959019 None:intergenic 25.0%
!!! TCACTGGTTTATTTTTCATA+AGG - chr4_4:78959105-78959124 Msa0706070:intron 25.0%
!! GAGTTAAAATCTGTTATTTG+TGG - chr4_4:78959194-78959213 Msa0706070:CDS 25.0%
! TAGTATGATAGAATATTCCA+AGG - chr4_4:78959286-78959305 Msa0706070:intron 25.0%
! AAAGCTATAAAAAAGAGACT+TGG - chr4_4:78959379-78959398 Msa0706070:CDS 25.0%
! TGGTACAAGTAAAATGATTT+CGG + chr4_4:78959727-78959746 None:intergenic 25.0%
! TAAAGCATATTATGACTTAG+TGG - chr4_4:78960187-78960206 Msa0706070:intron 25.0%
!!! GTTTTTTACTGCATATTATG+TGG - chr4_4:78960321-78960340 Msa0706070:intron 25.0%
! ATCATAGCCATCTATAATTA+TGG + chr4_4:78960508-78960527 None:intergenic 25.0%
! TAGTAAAACTTGATGTATAC+TGG - chr4_4:78960855-78960874 Msa0706070:intron 25.0%
! AGTAAAACTTGATGTATACT+GGG - chr4_4:78960856-78960875 Msa0706070:intron 25.0%
!!! AAAATGTTATTTCCAGTCAA+AGG + chr4_4:78960893-78960912 None:intergenic 25.0%
!! TTTAGAGTCTATTCTTTAAC+TGG - chr4_4:78960968-78960987 Msa0706070:intron 25.0%
!! CTCCATTCAAATAAAGTATT+AGG - chr4_4:78961500-78961519 Msa0706070:intron 25.0%
!! GACCTAATACTTTATTTGAA+TGG + chr4_4:78961505-78961524 None:intergenic 25.0%
! ACAGCTAAATAAAAATAACG+AGG - chr4_4:78961664-78961683 Msa0706070:CDS 25.0%
CATTAATATTTGTATGTGCG+AGG - chr4_4:78957453-78957472 Msa0706070:CDS 30.0%
! AAAAGGAATTCTTCTGAGAA+AGG - chr4_4:78957549-78957568 Msa0706070:intron 30.0%
!! ACAGCAAGATAATTGCTTTT+TGG - chr4_4:78957578-78957597 Msa0706070:intron 30.0%
!!! CAGCAAGATAATTGCTTTTT+GGG - chr4_4:78957579-78957598 Msa0706070:intron 30.0%
!!! AGCAAGATAATTGCTTTTTG+GGG - chr4_4:78957580-78957599 Msa0706070:intron 30.0%
!!! CTTTGGATTTTGTTTTTTGC+AGG - chr4_4:78957779-78957798 Msa0706070:intron 30.0%
!! GAGGTTTAGCTCAAATTTTA+AGG - chr4_4:78958106-78958125 Msa0706070:intron 30.0%
!! GTTTAGCTCAAATTTTAAGG+TGG - chr4_4:78958109-78958128 Msa0706070:intron 30.0%
!! CTCTCACTTGTTTAGAATTT+TGG + chr4_4:78958227-78958246 None:intergenic 30.0%
! CAGACATTTTTGATACATGT+AGG - chr4_4:78958265-78958284 Msa0706070:intron 30.0%
! ACATTTTTGATACATGTAGG+AGG - chr4_4:78958268-78958287 Msa0706070:intron 30.0%
GCTATGTGAAAATAAAGGTT+TGG + chr4_4:78958424-78958443 None:intergenic 30.0%
AAGCAGCTATGTGAAAATAA+AGG + chr4_4:78958429-78958448 None:intergenic 30.0%
! TCTAGTTAGCAAAAGTTGAT+TGG - chr4_4:78958459-78958478 Msa0706070:intron 30.0%
AGGAAAAAAAAAACTTTGCG+GGG + chr4_4:78958717-78958736 None:intergenic 30.0%
!! TTCATCGTGTTTTACTTTTG+GGG + chr4_4:78958787-78958806 None:intergenic 30.0%
ACAATTTGGCATGACAAATA+TGG + chr4_4:78959047-78959066 None:intergenic 30.0%
!!! GCATTATTTTTGTTTGTCAC+TGG - chr4_4:78959089-78959108 Msa0706070:intron 30.0%
TGAGTTTGTAATCAAGTGAA+TGG + chr4_4:78959265-78959284 None:intergenic 30.0%
ACAGCATAAAGTTGAGTATT+GGG + chr4_4:78959415-78959434 None:intergenic 30.0%
AATTAACTGAAAACAGCTCA+TGG + chr4_4:78959532-78959551 None:intergenic 30.0%
!! AAAATGATTTCGGCTTTGTT+TGG + chr4_4:78959717-78959736 None:intergenic 30.0%
GTATTCACATAAGTTGTTGT+TGG + chr4_4:78959747-78959766 None:intergenic 30.0%
CAAGTGCAATGAAAAATATG+CGG + chr4_4:78959778-78959797 None:intergenic 30.0%
! GAAATGTTGATGAACAACAT+AGG - chr4_4:78959911-78959930 Msa0706070:intron 30.0%
GAGTAAGGAAAAATCAACAT+TGG + chr4_4:78960047-78960066 None:intergenic 30.0%
!!! CACAGTTGTTTTTTTCTACA+TGG - chr4_4:78960267-78960286 Msa0706070:intron 30.0%
AATATTTGCAGAACGTCTAA+AGG + chr4_4:78960421-78960440 None:intergenic 30.0%
ACACAATTTACTATTGGCAT+TGG + chr4_4:78960639-78960658 None:intergenic 30.0%
!!! TTTTACTTTTTACAGAGTGC+CGG - chr4_4:78960658-78960677 Msa0706070:CDS 30.0%
!! GGTACATTATTGGTCTTATT+TGG + chr4_4:78960739-78960758 None:intergenic 30.0%
AGACCAATAATGTACCAAAA+AGG - chr4_4:78960743-78960762 Msa0706070:intron 30.0%
GACCAATAATGTACCAAAAA+GGG - chr4_4:78960744-78960763 Msa0706070:intron 30.0%
TTTAACTGGATGCATTGAAA+AGG - chr4_4:78960982-78961001 Msa0706070:intron 30.0%
ATAATTATTTAGTCTGGGGA+TGG - chr4_4:78961021-78961040 Msa0706070:intron 30.0%
TTTGGATAAATCTCAGTATC+TGG + chr4_4:78961050-78961069 None:intergenic 30.0%
! GTTTTACAGCATTATCCAAA+AGG - chr4_4:78961308-78961327 Msa0706070:intron 30.0%
!!! TCTCAAATTTGTTTTGCTTC+TGG - chr4_4:78961523-78961542 Msa0706070:intron 30.0%
!!! CTCAAATTTGTTTTGCTTCT+GGG - chr4_4:78961524-78961543 Msa0706070:intron 30.0%
TGAATTGACAACAAGAAATG+AGG - chr4_4:78961549-78961568 Msa0706070:intron 30.0%
!! TTCACAGTTTTAGCAAAAAG+TGG + chr4_4:78961810-78961829 None:intergenic 30.0%
AATGTTCATTTCAAAAGCAG+AGG - chr4_4:78961878-78961897 Msa0706070:five_prime_UTR 30.0%
ATGTTCATTTCAAAAGCAGA+GGG - chr4_4:78961879-78961898 Msa0706070:five_prime_UTR 30.0%
TGACAAATTGACAGCTTCAA+CGG + chr4_4:78957481-78957500 None:intergenic 35.0%
! TAGCTTCTTTTAGCATATGG+TGG + chr4_4:78957504-78957523 None:intergenic 35.0%
!!! AAGATAATTGCTTTTTGGGG+TGG - chr4_4:78957583-78957602 Msa0706070:intron 35.0%
AGATGACAAGAATGAAACCA+AGG + chr4_4:78957649-78957668 None:intergenic 35.0%
!! CATACTTGCTGTTCATACTT+AGG - chr4_4:78957812-78957831 Msa0706070:intron 35.0%
CTGTAGACTGTAGTAATAAG+AGG - chr4_4:78957841-78957860 Msa0706070:intron 35.0%
AGAACAAATCTCATCCAATG+TGG + chr4_4:78958028-78958047 None:intergenic 35.0%
!!! AGAGTCCATCCAAGATTTTT+TGG - chr4_4:78958136-78958155 Msa0706070:intron 35.0%
!!! GAGTCCATCCAAGATTTTTT+GGG - chr4_4:78958137-78958156 Msa0706070:intron 35.0%
ATGACCCAAAAAATCTTGGA+TGG + chr4_4:78958144-78958163 None:intergenic 35.0%
! GAGAGTATATTAGCAGTCTT+CGG - chr4_4:78958242-78958261 Msa0706070:intron 35.0%
AGAAACTGTCCGAAATTGAT+TGG - chr4_4:78958634-78958653 Msa0706070:CDS 35.0%
AATTAGTTGCTCGTGATCAA+AGG - chr4_4:78958679-78958698 Msa0706070:intron 35.0%
GAAAAAAAAAACTTTGCGGG+GGG + chr4_4:78958715-78958734 None:intergenic 35.0%
GGAAAAAAAAAACTTTGCGG+GGG + chr4_4:78958716-78958735 None:intergenic 35.0%
GTTAGCAAACAACTGCTATT+TGG - chr4_4:78959155-78959174 Msa0706070:CDS 35.0%
! CAGCATAAAGTTGAGTATTG+GGG + chr4_4:78959414-78959433 None:intergenic 35.0%
GACAGCATAAAGTTGAGTAT+TGG + chr4_4:78959416-78959435 None:intergenic 35.0%
TACTCAACTTTATGCTGTCA+TGG - chr4_4:78959417-78959436 Msa0706070:intron 35.0%
TTCCAGTAGACTGCATAATA+AGG + chr4_4:78959455-78959474 None:intergenic 35.0%
TATAACGGTGCTTATGCTAT+AGG - chr4_4:78959666-78959685 Msa0706070:intron 35.0%
!! ATTTCGGCTTTGTTTGGAAT+TGG + chr4_4:78959711-78959730 None:intergenic 35.0%
! ATTTTTCCTTACTCTCTCCT+TGG - chr4_4:78960053-78960072 Msa0706070:intron 35.0%
ATGTTTGTGTTGCATCTAGT+AGG + chr4_4:78960130-78960149 None:intergenic 35.0%
GCATATTATGACTTAGTGGT+AGG - chr4_4:78960191-78960210 Msa0706070:intron 35.0%
TTTGCTCTATGTTCCAATCT+AGG - chr4_4:78960232-78960251 Msa0706070:intron 35.0%
GAGTGCTATAAATGATACCT+GGG - chr4_4:78960355-78960374 Msa0706070:intron 35.0%
TAGACGTTCTGCAAATATTC+TGG - chr4_4:78960422-78960441 Msa0706070:intron 35.0%
AGACGTTCTGCAAATATTCT+GGG - chr4_4:78960423-78960442 Msa0706070:intron 35.0%
! ATGATGTTTCTACTTCCGTT+TGG - chr4_4:78960523-78960542 Msa0706070:intron 35.0%
!!! TTTACTTTTTACAGAGTGCC+GGG - chr4_4:78960659-78960678 Msa0706070:CDS 35.0%
!! GTCTTATTTGGTTGTGAACT+AGG + chr4_4:78960727-78960746 None:intergenic 35.0%
!! CTCCCTTTTTGGTACATTAT+TGG + chr4_4:78960749-78960768 None:intergenic 35.0%
AGCAATAATCACCTAGATTC+AGG + chr4_4:78960826-78960845 None:intergenic 35.0%
GTCTTTCAAAAACCTTTGAC+TGG - chr4_4:78960878-78960897 Msa0706070:intron 35.0%
ACAATGTGGTTACTAAGTGA+AGG + chr4_4:78960916-78960935 None:intergenic 35.0%
TTTCCACTAGATCAGTTAAG+AGG + chr4_4:78961217-78961236 None:intergenic 35.0%
GGTTCATAGATGACGAAAAA+TGG + chr4_4:78961269-78961288 None:intergenic 35.0%
!!! CCAATACATTACTAGCCTTT+TGG + chr4_4:78961326-78961345 None:intergenic 35.0%
CCAAAAGGCTAGTAATGTAT+TGG - chr4_4:78961323-78961342 Msa0706070:intron 35.0%
GTTACATTATGGCAGATTCT+TGG + chr4_4:78961401-78961420 None:intergenic 35.0%
!! TATTTGAATGGAGAAGCATC+AGG + chr4_4:78961493-78961512 None:intergenic 35.0%
TGTCTCATAAGTACATCACA+TGG + chr4_4:78961771-78961790 None:intergenic 35.0%
!! GTTTTAGCAAAAAGTGGCAT+GGG + chr4_4:78961804-78961823 None:intergenic 35.0%
!! AGTTTTAGCAAAAAGTGGCA+TGG + chr4_4:78961805-78961824 None:intergenic 35.0%
GAAATGAACATTGCTCAACA+AGG + chr4_4:78961870-78961889 None:intergenic 35.0%
!!! ACCTTCTTTTTTGCATGCTG+TGG - chr4_4:78957947-78957966 Msa0706070:CDS 40.0%
TCCACAGCATGCAAAAAAGA+AGG + chr4_4:78957951-78957970 None:intergenic 40.0%
! CACAGTTTAGAGTTCCACAT+TGG - chr4_4:78958011-78958030 Msa0706070:intron 40.0%
!!! TGGTTTTGTAGACTTGAGTG+AGG - chr4_4:78958087-78958106 Msa0706070:intron 40.0%
GCAGATGACCCAAAAAATCT+TGG + chr4_4:78958148-78958167 None:intergenic 40.0%
! TTTTTCCCACTAGGTGAAGT+CGG + chr4_4:78958297-78958316 None:intergenic 40.0%
AGGCATAGTTCAAGTGGTAA+GGG + chr4_4:78958937-78958956 None:intergenic 40.0%
TAGGCATAGTTCAAGTGGTA+AGG + chr4_4:78958938-78958957 None:intergenic 40.0%
AAATACCCACTTAGCCAGTT+AGG + chr4_4:78958957-78958976 None:intergenic 40.0%
GACCTTATTATGCAGTCTAC+TGG - chr4_4:78959450-78959469 Msa0706070:intron 40.0%
TATCCACTTGTGAGACAGTT+CGG - chr4_4:78959475-78959494 Msa0706070:intron 40.0%
GACAGTTCGGAGGAATTTAT+TGG - chr4_4:78959488-78959507 Msa0706070:intron 40.0%
GTGCAATGAAAAATATGCGG+AGG + chr4_4:78959775-78959794 None:intergenic 40.0%
AGTTAGTAGAACACCAATGC+AGG + chr4_4:78959860-78959879 None:intergenic 40.0%
! TCTGTTGATTGTGTAGTTGC+TGG - chr4_4:78959889-78959908 Msa0706070:intron 40.0%
AGGAGATCATATTCATGAGC+AGG - chr4_4:78959931-78959950 Msa0706070:intron 40.0%
AGATCATATTCATGAGCAGG+TGG - chr4_4:78959934-78959953 Msa0706070:intron 40.0%
AAATGACCAAGGAGAGAGTA+AGG + chr4_4:78960062-78960081 None:intergenic 40.0%
GCAAGCAAAGAAAATGACCA+AGG + chr4_4:78960073-78960092 None:intergenic 40.0%
GATGCAACACAAACATCTCT+TGG - chr4_4:78960134-78960153 Msa0706070:intron 40.0%
GGAACATAGAGCAAATCTCA+AGG + chr4_4:78960227-78960246 None:intergenic 40.0%
GTGTATCAAACAGCCTAGAT+TGG + chr4_4:78960248-78960267 None:intergenic 40.0%
CGAGTGCTATAAATGATACC+TGG - chr4_4:78960354-78960373 Msa0706070:intron 40.0%
! GTAGTTCTGTTGGCAGAAAA+TGG - chr4_4:78960377-78960396 Msa0706070:intron 40.0%
!!! TTACTTTTTACAGAGTGCCG+GGG - chr4_4:78960660-78960679 Msa0706070:CDS 40.0%
! TCTTTGAGGAAATTGTACCC+CGG + chr4_4:78960680-78960699 None:intergenic 40.0%
GTGAACTAGGACGATTTGAT+TGG + chr4_4:78960714-78960733 None:intergenic 40.0%
CCTAGATTCAGGAATAGTGT+TGG + chr4_4:78960815-78960834 None:intergenic 40.0%
CCAACACTATTCCTGAATCT+AGG - chr4_4:78960812-78960831 Msa0706070:intron 40.0%
CATGCATGATTCTTGATCTG+TGG - chr4_4:78961190-78961209 Msa0706070:intron 40.0%
ACACAGTTGCAGCATAAGAA+AGG + chr4_4:78961290-78961309 None:intergenic 40.0%
CAACAAGAAATGAGGTTGAG+AGG - chr4_4:78961557-78961576 Msa0706070:intron 40.0%
AGGGTTTATCAGTGCATCCT+TGG - chr4_4:78957629-78957648 Msa0706070:intron 45.0%
ACATTAGTCACCTCACAAGC+TGG - chr4_4:78958067-78958086 Msa0706070:intron 45.0%
GTCTACAAAACCAGCTTGTG+AGG + chr4_4:78958080-78958099 None:intergenic 45.0%
CACCTAGTGGGAAAAAGCTT+CGG - chr4_4:78958301-78958320 Msa0706070:intron 45.0%
!! AACCGAAGCTTTTTCCCACT+AGG + chr4_4:78958306-78958325 None:intergenic 45.0%
!! TGTTGCAGCATTGACTAGCT+CGG + chr4_4:78958610-78958629 None:intergenic 45.0%
AAAAAACTTTGCGGGGGGTA+GGG + chr4_4:78958710-78958729 None:intergenic 45.0%
AAAAAAACTTTGCGGGGGGT+AGG + chr4_4:78958711-78958730 None:intergenic 45.0%
TGGTAAGGGTAGTAGTCGTA+GGG + chr4_4:78958923-78958942 None:intergenic 45.0%
CCAGTTAGGCATAGTTCAAG+TGG + chr4_4:78958943-78958962 None:intergenic 45.0%
CCACTTGAACTATGCCTAAC+TGG - chr4_4:78958940-78958959 Msa0706070:intron 45.0%
ACTATGCCTAACTGGCTAAG+TGG - chr4_4:78958948-78958967 Msa0706070:intron 45.0%
CTATGCCTAACTGGCTAAGT+GGG - chr4_4:78958949-78958968 Msa0706070:intron 45.0%
AGCAACATCACTCAAAGCCT+TGG + chr4_4:78959306-78959325 None:intergenic 45.0%
AGAAATATTCGCTCCCTGAC+AGG + chr4_4:78960107-78960126 None:intergenic 45.0%
GCAACACAAACATCTCTTGG+TGG - chr4_4:78960137-78960156 Msa0706070:intron 45.0%
!! AACATCTCTTGGTGGTGCTT+CGG - chr4_4:78960145-78960164 Msa0706070:intron 45.0%
! TGATACCTGGGTAGTTCTGT+TGG - chr4_4:78960367-78960386 Msa0706070:intron 45.0%
TGGACAACTTGAGCTCTTTG+AGG + chr4_4:78960694-78960713 None:intergenic 45.0%
AACCTCTCCACGTCTAAGTA+GGG + chr4_4:78960776-78960795 None:intergenic 45.0%
GGACCTCTTAACTGATCTAG+TGG - chr4_4:78961211-78961230 Msa0706070:intron 45.0%
GTTTGGCATCAACAGCATCA+AGG + chr4_4:78961365-78961384 None:intergenic 45.0%
TGTTGATGCCAAACATCCTC+AGG - chr4_4:78961371-78961390 Msa0706070:intron 45.0%
ACATTGCTCAACAAGGTCGA+GGG + chr4_4:78961863-78961882 None:intergenic 45.0%
AACATTGCTCAACAAGGTCG+AGG + chr4_4:78961864-78961883 None:intergenic 45.0%
GAGGGTAATGCATCTTGTGA+TGG - chr4_4:78961897-78961916 Msa0706070:five_prime_UTR 45.0%
!! TTAATTAATTAAAAAGAAAA+AGG - chr4_4:78957532-78957551 Msa0706070:intron 5.0%
CTAACTCAACTCTCACGCTC+AGG + chr4_4:78958198-78958217 None:intergenic 50.0%
AAAAACTTTGCGGGGGGTAG+GGG + chr4_4:78958709-78958728 None:intergenic 50.0%
AGGGTAGTAGTCGTAGGGTT+AGG + chr4_4:78958918-78958937 None:intergenic 50.0%
GTGGTAAGGGTAGTAGTCGT+AGG + chr4_4:78958924-78958943 None:intergenic 50.0%
ACTTGTTCAACACTGCGCCT+AGG - chr4_4:78959218-78959237 Msa0706070:CDS 50.0%
AATCAAGTGAATGGCCTGCC+AGG + chr4_4:78959256-78959275 None:intergenic 50.0%
TCTTGCTTGCGTTCCTGCAT+TGG - chr4_4:78959844-78959863 Msa0706070:intron 50.0%
TGCAGTCAGATTTGCCTGTC+AGG - chr4_4:78960090-78960109 Msa0706070:intron 50.0%
GCAGTCAGATTTGCCTGTCA+GGG - chr4_4:78960091-78960110 Msa0706070:intron 50.0%
!! ACATCTCTTGGTGGTGCTTC+GGG - chr4_4:78960146-78960165 Msa0706070:intron 50.0%
TTCTGCCAACAGAACTACCC+AGG + chr4_4:78960375-78960394 None:intergenic 50.0%
TCTCCACGTCTAAGTAGGGA+GGG + chr4_4:78960772-78960791 None:intergenic 50.0%
CAACCTCTCCACGTCTAAGT+AGG + chr4_4:78960777-78960796 None:intergenic 50.0%
TTGGCTCACCTGAGGATGTT+TGG + chr4_4:78961382-78961401 None:intergenic 50.0%
ACGAGGCATATGCTGTCAAC+TGG - chr4_4:78961681-78961700 Msa0706070:CDS 50.0%
GGCATATGCTGTCAACTGGA+AGG - chr4_4:78961685-78961704 Msa0706070:CDS 50.0%
! AGGTAGCCGACTTCACCTAG+TGG - chr4_4:78958288-78958307 Msa0706070:intron 55.0%
! GGTAGCCGACTTCACCTAGT+GGG - chr4_4:78958289-78958308 Msa0706070:intron 55.0%
AAAACTTTGCGGGGGGTAGG+GGG + chr4_4:78958708-78958727 None:intergenic 55.0%
CCAGGCTTAGGCATCAACCT+AGG + chr4_4:78959238-78959257 None:intergenic 55.0%
!! CCTAGGTTGATGCCTAAGCC+TGG - chr4_4:78959235-78959254 Msa0706070:intron 55.0%
CCTCCGAACTGTCTCACAAG+TGG + chr4_4:78959481-78959500 None:intergenic 55.0%
CCACTTGTGAGACAGTTCGG+AGG - chr4_4:78959478-78959497 Msa0706070:intron 55.0%
GACAACAGCACTGTCGTCTC+TGG + chr4_4:78960019-78960038 None:intergenic 55.0%
! AGTAGGGAGGGCTCCCTTTT+TGG + chr4_4:78960760-78960779 None:intergenic 55.0%
CTCTCCACGTCTAAGTAGGG+AGG + chr4_4:78960773-78960792 None:intergenic 55.0%
CTCCCTACTTAGACGTGGAG+AGG - chr4_4:78960771-78960790 Msa0706070:intron 55.0%
GCAGATTCTTGGCTCACCTG+AGG + chr4_4:78961390-78961409 None:intergenic 55.0%
! GGTTGATGCCTAAGCCTGGC+AGG - chr4_4:78959239-78959258 Msa0706070:intron 60.0%
GTGAATGGCCTGCCAGGCTT+AGG + chr4_4:78959250-78959269 None:intergenic 60.0%
GAGCCCTCCCTACTTAGACG+TGG - chr4_4:78960766-78960785 Msa0706070:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 78957409 78961924 78957409 ID=Msa0706070;Name=Msa0706070
chr4_4 mRNA 78957409 78961924 78957409 ID=Msa0706070-mRNA-1;Parent=Msa0706070;Name=Msa0706070-mRNA-1;_AED=0.16;_eAED=0.16;_QI=205|0|0.12|1|0.85|0.62|8|0|246
chr4_4 exon 78957409 78957492 78957409 ID=Msa0706070-mRNA-1:exon:25321;Parent=Msa0706070-mRNA-1
chr4_4 exon 78957941 78958016 78957941 ID=Msa0706070-mRNA-1:exon:25320;Parent=Msa0706070-mRNA-1
chr4_4 exon 78958500 78958660 78958500 ID=Msa0706070-mRNA-1:exon:25319;Parent=Msa0706070-mRNA-1
chr4_4 exon 78959125 78959238 78959125 ID=Msa0706070-mRNA-1:exon:25318;Parent=Msa0706070-mRNA-1
chr4_4 exon 78959330 78959428 78959330 ID=Msa0706070-mRNA-1:exon:25317;Parent=Msa0706070-mRNA-1
chr4_4 exon 78959958 78959973 78959958 ID=Msa0706070-mRNA-1:exon:25316;Parent=Msa0706070-mRNA-1
chr4_4 exon 78960633 78960741 78960633 ID=Msa0706070-mRNA-1:exon:25315;Parent=Msa0706070-mRNA-1
chr4_4 exon 78961641 78961924 78961641 ID=Msa0706070-mRNA-1:exon:25314;Parent=Msa0706070-mRNA-1
chr4_4 five_prime_UTR 78961720 78961924 78961720 ID=Msa0706070-mRNA-1:five_prime_utr;Parent=Msa0706070-mRNA-1
chr4_4 CDS 78961641 78961719 78961641 ID=Msa0706070-mRNA-1:cds;Parent=Msa0706070-mRNA-1
chr4_4 CDS 78960633 78960741 78960633 ID=Msa0706070-mRNA-1:cds;Parent=Msa0706070-mRNA-1
chr4_4 CDS 78959958 78959973 78959958 ID=Msa0706070-mRNA-1:cds;Parent=Msa0706070-mRNA-1
chr4_4 CDS 78959330 78959428 78959330 ID=Msa0706070-mRNA-1:cds;Parent=Msa0706070-mRNA-1
chr4_4 CDS 78959125 78959238 78959125 ID=Msa0706070-mRNA-1:cds;Parent=Msa0706070-mRNA-1
chr4_4 CDS 78958500 78958660 78958500 ID=Msa0706070-mRNA-1:cds;Parent=Msa0706070-mRNA-1
chr4_4 CDS 78957941 78958016 78957941 ID=Msa0706070-mRNA-1:cds;Parent=Msa0706070-mRNA-1
chr4_4 CDS 78957409 78957492 78957409 ID=Msa0706070-mRNA-1:cds;Parent=Msa0706070-mRNA-1
Gene Sequence

>Msa0706070

ATGTTAAATCTTTTTAGGGTTTATCAGTGCATCCTTGGTTTCATTCTTGTCATCTCCATCTTCATATCAGTTTTTCAAGAAAGTAAGATGGCAGCCGAGCTAGTCAATGCTGCAACAAGTGAGAAACTGTCCGAAATTGATTGGATGAAAAATATTGAAATCTCTGAATTAGTTGCTCGTGATCAAAGGAAAGCTAAAGATGTTTTGCTGGAAATGTTGATGAACAACATAGGAGATCATATTCATGAGCAGGTGGTTCATGCAGAAGTTATTCCTATTCTTGTGAAAATTGTAAAGAAAAAGTCAGATTTGCCTGTCAGGGAGCGAATATTTCTCCTACTAGATGCAACACAAACATCTCTTGGTGGTGCTTCGGGCAAGTTTCCGCAGTATTATAAAGCATATTATGACTTAGTGAGTGCCGGGGTACAATTTCCTCAAAGAGCTCAAGTTGTCCAATCAAATCGTCCTAGTTCACAACCAAATAAGACCAATAATGTACCAAAAAGGGAGCCCTCCCTACTTAGACGTGGAGAGGTTGTTCAAAAAGCAGAATCCAACACTATTCCTGAATCTAGCATTATCCAAAAGGCTAGTAATGTATTGGAAGTTCTAAAAGAAGTCCTTGATGCTGTTGATGCCAAACATCCTCAGGGAGCAAGAGATGAATTCACCCTCGACCTTGTTGAGCAATGTTCATTTCAAAAGCAGAGGGTAATGCATCTTGTGATGGCTTCT

Protein sequence

>Msa0706070

MLNLFRVYQCILGFILVISIFISVFQESKMAAELVNAATSEKLSEIDWMKNIEISELVARDQRKAKDVLLEMLMNNIGDHIHEQVVHAEVIPILVKIVKKKSDLPVRERIFLLLDATQTSLGGASGKFPQYYKAYYDLVSAGVQFPQRAQVVQSNRPSSQPNKTNNVPKREPSLLRRGEVVQKAESNTIPESSIIQKASNVLEVLKEVLDAVDAKHPQGARDEFTLDLVEQCSFQKQRVMHLVMAS