Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0708010 | XP_024630695.2 | 80.769 | 52 | 10 | 0 | 176 | 227 | 100 | 151 | 1.54e-19 | 97.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0708010 | sp|Q9SV13|SUT31_ARATH | 52.542 | 59 | 28 | 0 | 82 | 140 | 500 | 558 | 8.46e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0708010 | A0A2K3KYP2 | 67.308 | 52 | 17 | 0 | 176 | 227 | 42 | 93 | 1.66e-13 | 79.0 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0708010 | Msa0766630 | 0.801039 | 1.086635e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0708010 | MtrunA17_Chr1g0185231 | 62.295 | 61 | 23 | 0 | 78 | 138 | 497 | 557 | 7.98e-17 | 79.0 |
| Msa0708010 | MtrunA17_Chr7g0260181 | 49.180 | 61 | 31 | 0 | 78 | 138 | 494 | 554 | 6.97e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0708010 | AT3G51895.2 | 52.542 | 59 | 28 | 0 | 82 | 140 | 545 | 603 | 1.13e-13 | 70.1 |
| Msa0708010 | AT3G51895.1 | 52.542 | 59 | 28 | 0 | 82 | 140 | 500 | 558 | 8.60e-13 | 67.4 |
| Msa0708010 | AT4G02700.1 | 54.237 | 59 | 27 | 0 | 82 | 140 | 491 | 549 | 8.09e-12 | 64.7 |
Find 54 sgRNAs with CRISPR-Local
Find 326 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCCACTGTAAAATATTTA+AGG | 0.098067 | 4_4:+81470447 | Msa0708010:CDS |
| CGAATCCTAGCATCATATTT+AGG | 0.212514 | 4_4:-81474089 | None:intergenic |
| AGCGCCAATTACATTTGTTT+TGG | 0.254862 | 4_4:+81470317 | Msa0708010:CDS |
| GTTCCCAAAACAAATGTAAT+TGG | 0.257476 | 4_4:-81470321 | None:intergenic |
| TTTACAGTGGCAAAGTAAAT+TGG | 0.268927 | 4_4:-81470437 | None:intergenic |
| ACAACATCTGCCCTCTAAAT+TGG | 0.272991 | 4_4:-81474218 | None:intergenic |
| CTTTCACAGATGTTGCACTA+TGG | 0.320183 | 4_4:+81468022 | Msa0708010:CDS |
| TGTAAATGACATAACAAATA+TGG | 0.321073 | 4_4:+81468048 | Msa0708010:CDS |
| TGCATAAATAACCAATAAAA+TGG | 0.331524 | 4_4:-81470065 | None:intergenic |
| TATCTGTATATGACATAGTT+TGG | 0.342395 | 4_4:-81470353 | None:intergenic |
| TGCCACTGTAAAATATTTAA+GGG | 0.345577 | 4_4:+81470448 | Msa0708010:CDS |
| GATGTACTTTGGCCTGTATT+CGG | 0.376454 | 4_4:-81474189 | None:intergenic |
| ACCTGTGGAGATGGTATAGT+AGG | 0.400361 | 4_4:-81473719 | None:intergenic |
| ACACAATCAACTGCACAAAC+AGG | 0.404720 | 4_4:-81474251 | None:intergenic |
| CTCATGGTGGATTGATGAAA+AGG | 0.416029 | 4_4:+81470569 | Msa0708010:CDS |
| TCAGTATCTAATTCTAAAGA+TGG | 0.416774 | 4_4:+81470409 | Msa0708010:CDS |
| CTTATCGCACAAACCTCATC+TGG | 0.426151 | 4_4:-81468124 | None:intergenic |
| ACATCTCGAAGCCAATTTAG+AGG | 0.434880 | 4_4:+81474207 | Msa0708010:CDS |
| ATTGGCTTCGAGATGTACTT+TGG | 0.462708 | 4_4:-81474200 | None:intergenic |
| TTTCACAGATGTTGCACTAT+GGG | 0.471629 | 4_4:+81468023 | Msa0708010:CDS |
| TCTCGAGGCCGATACTCAAT+TGG | 0.475296 | 4_4:+81473668 | Msa0708010:CDS |
| GCCGATACTCAATTGGTAAA+GGG | 0.476650 | 4_4:+81473675 | Msa0708010:CDS |
| CTCTTGATACATCATACCTC+TGG | 0.477745 | 4_4:-81474144 | None:intergenic |
| CCAATAAAATGGTATTGAAA+AGG | 0.483281 | 4_4:-81470054 | None:intergenic |
| TCCCTTTACCAATTGAGTAT+CGG | 0.484367 | 4_4:-81473676 | None:intergenic |
| CCTGTGGAGATGGTATAGTA+GGG | 0.491435 | 4_4:-81473718 | None:intergenic |
| GGCCGATACTCAATTGGTAA+AGG | 0.498429 | 4_4:+81473674 | Msa0708010:CDS |
| ATGCAGAAAATTCCGAATAC+AGG | 0.501663 | 4_4:+81474177 | Msa0708010:CDS |
| GGTTATTTATGCAGCACACT+TGG | 0.512036 | 4_4:+81470075 | Msa0708010:intron |
| TCAACTGCACAAACAGGGAT+AGG | 0.516249 | 4_4:-81474245 | None:intergenic |
| CAACTGCACAAACAGGGATA+GGG | 0.518652 | 4_4:-81474244 | None:intergenic |
| AGTGTCTCTTGAGGCTTAAG+TGG | 0.519644 | 4_4:+81468077 | Msa0708010:CDS |
| TTAGTGTTTATAGGATCTCA+TGG | 0.522031 | 4_4:+81470553 | Msa0708010:intron |
| TGGATGGTACTCGACATGAT+AGG | 0.524357 | 4_4:-81468104 | None:intergenic |
| CTGTAAAATATTTAAGGGAA+AGG | 0.541252 | 4_4:+81470453 | Msa0708010:CDS |
| TTTATAGATACCTGTGGAGA+TGG | 0.541708 | 4_4:-81473728 | None:intergenic |
| AACTGCACAAACAGGGATAG+GGG | 0.560044 | 4_4:-81474243 | None:intergenic |
| TCATGGTGGATTGATGAAAA+GGG | 0.567065 | 4_4:+81470570 | Msa0708010:CDS |
| GGCAACCTAAATATGATGCT+AGG | 0.577478 | 4_4:+81474084 | Msa0708010:CDS |
| CCCTACTATACCATCTCCAC+AGG | 0.582218 | 4_4:+81473718 | Msa0708010:CDS |
| AGAAGAGGTGCTAACAGAGG+TGG | 0.584838 | 4_4:+81473632 | Msa0708010:CDS |
| CACAATCAACTGCACAAACA+GGG | 0.595793 | 4_4:-81474250 | None:intergenic |
| CATCTCGAAGCCAATTTAGA+GGG | 0.600928 | 4_4:+81474208 | Msa0708010:exon |
| AAGGGAGAAGGTAGATCCAG+AGG | 0.606326 | 4_4:+81474128 | Msa0708010:CDS |
| TGGCTTATAAGTGTCTCTTG+AGG | 0.623975 | 4_4:+81468068 | Msa0708010:CDS |
| GGAAGGACTTTATCCTCTCG+AGG | 0.630034 | 4_4:+81473653 | Msa0708010:CDS |
| GAGGTATGATGTATCAAGAG+AGG | 0.641582 | 4_4:+81474147 | Msa0708010:CDS |
| TCGCACAAACCTCATCTGGA+TGG | 0.647070 | 4_4:-81468120 | None:intergenic |
| AATTGAGTATCGGCCTCGAG+AGG | 0.652585 | 4_4:-81473666 | None:intergenic |
| CTGTGGAGATGGTATAGTAG+GGG | 0.663359 | 4_4:-81473717 | None:intergenic |
| TGTCGAGTACCATCCAGATG+AGG | 0.672836 | 4_4:+81468111 | Msa0708010:CDS |
| TCTAGAAGAGGTGCTAACAG+AGG | 0.681012 | 4_4:+81473629 | Msa0708010:CDS |
| GTGTTTATAGGATCTCATGG+TGG | 0.697855 | 4_4:+81470556 | Msa0708010:intron |
| GAGGTGCTAACAGAGGTGGA+AGG | 0.700781 | 4_4:+81473636 | Msa0708010:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTATTAAAATTTTTATT+GGG | - | chr4_4:81469984-81470003 | None:intergenic | 0.0% |
| !!! | AATTTTATTAAAATTTTTAT+TGG | - | chr4_4:81469985-81470004 | None:intergenic | 0.0% |
| !!! | TTTTTTTCATGATAAAAAAT+TGG | - | chr4_4:81469864-81469883 | None:intergenic | 10.0% |
| !!! | AAAAAAAAGTATAAAAAGTT+TGG | - | chr4_4:81471434-81471453 | None:intergenic | 10.0% |
| !! | TATTGAAATTACATATTTAA+CGG | + | chr4_4:81472994-81473013 | Msa0708010:intron | 10.0% |
| !! | TTATTGATATACAAATTTGA+AGG | + | chr4_4:81468315-81468334 | Msa0708010:intron | 15.0% |
| !! | AGGTATTAAAAATTGTAAAT+TGG | - | chr4_4:81469701-81469720 | None:intergenic | 15.0% |
| !!! | TTTTCTAAAATCAATTTTGT+TGG | - | chr4_4:81469771-81469790 | None:intergenic | 15.0% |
| !! | CATGAAAAAAACTTATAAAT+TGG | + | chr4_4:81469873-81469892 | Msa0708010:intron | 15.0% |
| !!! | TTCTTTATATTCTATTGATT+TGG | + | chr4_4:81470781-81470800 | Msa0708010:intron | 15.0% |
| !! | AAATCAAAAAATAAGAAAAG+CGG | - | chr4_4:81471033-81471052 | None:intergenic | 15.0% |
| !!! | TTCAGAAATTGATTTTATTA+GGG | - | chr4_4:81471931-81471950 | None:intergenic | 15.0% |
| !!! | CAATCAATATCATTTTTTTT+TGG | - | chr4_4:81472223-81472242 | None:intergenic | 15.0% |
| !!! | AAAAAATGATATTGATTGAT+TGG | + | chr4_4:81472225-81472244 | Msa0708010:intron | 15.0% |
| !! | ACAAAAATAAGCAAATAAAA+TGG | - | chr4_4:81472452-81472471 | None:intergenic | 15.0% |
| !! | TTGAATGTAAATATTCATTA+TGG | + | chr4_4:81472898-81472917 | Msa0708010:intron | 15.0% |
| !! | TGTAAATGACATAACAAATA+TGG | + | chr4_4:81468048-81468067 | Msa0708010:CDS | 20.0% |
| !! | ATTACACAGAAAATTGTTTA+AGG | + | chr4_4:81468726-81468745 | Msa0708010:intron | 20.0% |
| !!! | ATTTCAAATTTGTTCTTCAT+AGG | - | chr4_4:81469065-81469084 | None:intergenic | 20.0% |
| !! | TAAGAAGTTACATCATTAAT+TGG | - | chr4_4:81469641-81469660 | None:intergenic | 20.0% |
| !!! | GATTTTAATGATTAAGATTG+TGG | + | chr4_4:81469914-81469933 | Msa0708010:intron | 20.0% |
| !! | TGCATAAATAACCAATAAAA+TGG | - | chr4_4:81470068-81470087 | None:intergenic | 20.0% |
| !! | AGAAAATTGTTAGTGTTTAT+AGG | + | chr4_4:81470544-81470563 | Msa0708010:intron | 20.0% |
| !! | CAAAACACAACATATATAAT+AGG | - | chr4_4:81470657-81470676 | None:intergenic | 20.0% |
| !!! | CTATTATATATGTTGTGTTT+TGG | + | chr4_4:81470655-81470674 | Msa0708010:intron | 20.0% |
| !! | TTATCAATTAAGACAAAGTT+AGG | - | chr4_4:81470714-81470733 | None:intergenic | 20.0% |
| !! | AATCAAAAAATAAGAAAAGC+GGG | - | chr4_4:81471032-81471051 | None:intergenic | 20.0% |
| !! | TCTAAATCATAGACATAAAA+TGG | - | chr4_4:81471187-81471206 | None:intergenic | 20.0% |
| !! | CCAATAAGATAATATTGAAA+AGG | - | chr4_4:81471256-81471275 | None:intergenic | 20.0% |
| !!! | CCTTTTCAATATTATCTTAT+TGG | + | chr4_4:81471253-81471272 | Msa0708010:intron | 20.0% |
| !! | TGCATAAATAACCAATAAAA+TGG | - | chr4_4:81470068-81470087 | None:intergenic | 20.0% |
| !!! | AATTTGTTTATCAATTGTCT+AGG | - | chr4_4:81471404-81471423 | None:intergenic | 20.0% |
| !!! | TAAATATTTCAGACGATTTT+GGG | - | chr4_4:81471712-81471731 | None:intergenic | 20.0% |
| !!! | ATAAATATTTCAGACGATTT+TGG | - | chr4_4:81471713-81471732 | None:intergenic | 20.0% |
| !!! | TTTTTTTTGACTGATGAAAT+AGG | - | chr4_4:81471890-81471909 | None:intergenic | 20.0% |
| !!! | CTTCAGAAATTGATTTTATT+AGG | - | chr4_4:81471932-81471951 | None:intergenic | 20.0% |
| !! | CTTGGTTTCTTTAAATTTAA+TGG | + | chr4_4:81472168-81472187 | Msa0708010:intron | 20.0% |
| !! | CTTTAAATTTAATGGTTGAT+TGG | + | chr4_4:81472176-81472195 | Msa0708010:intron | 20.0% |
| !!! | TTTACATGTTTAATTTACAG+AGG | + | chr4_4:81472350-81472369 | Msa0708010:intron | 20.0% |
| !!! | TTTTAGTTTTTATTGTTCTG+AGG | + | chr4_4:81472507-81472526 | Msa0708010:intron | 20.0% |
| !! | AGAATGGCTAATAATAATTA+GGG | - | chr4_4:81472934-81472953 | None:intergenic | 20.0% |
| !! | AAGAATGGCTAATAATAATT+AGG | - | chr4_4:81472935-81472954 | None:intergenic | 20.0% |
| !! | TTATTATTAGCCATTCTTAT+TGG | + | chr4_4:81472937-81472956 | Msa0708010:intron | 20.0% |
| !! | ATGAAGCTAATATATACTAA+GGG | - | chr4_4:81473528-81473547 | None:intergenic | 20.0% |
| !!! | TTTGGTAGTTAAGATAATAT+TGG | + | chr4_4:81473910-81473929 | Msa0708010:intron | 20.0% |
| !! | AGTAAATTACATGTAACTAA+TGG | - | chr4_4:81473988-81474007 | None:intergenic | 20.0% |
| !!! | TTTTGTAGAAGTATTGTAAA+TGG | + | chr4_4:81474063-81474082 | Msa0708010:intron | 20.0% |
| !!! | CTGTGTAATTTTGTTTAGTT+AGG | - | chr4_4:81468715-81468734 | None:intergenic | 25.0% |
| ! | ATGATGTAACTTCTTAACTA+TGG | + | chr4_4:81469645-81469664 | Msa0708010:intron | 25.0% |
| ! | TAATATTTGTTCAAGTGTAC+AGG | - | chr4_4:81469672-81469691 | None:intergenic | 25.0% |
| !!! | AAAGAGTTTTGATGATAACA+AGG | - | chr4_4:81469721-81469740 | None:intergenic | 25.0% |
| !! | CCAATAAAATGGTATTGAAA+AGG | - | chr4_4:81470057-81470076 | None:intergenic | 25.0% |
| !! | CCTTTTCAATACCATTTTAT+TGG | + | chr4_4:81470054-81470073 | Msa0708010:CDS | 25.0% |
| !! | GTGTTTTCTTAAGCATATTT+AGG | + | chr4_4:81470257-81470276 | Msa0708010:intron | 25.0% |
| !!! | AATTACATTTGTTTTGGGAA+CGG | + | chr4_4:81470323-81470342 | Msa0708010:CDS | 25.0% |
| ! | TATCTGTATATGACATAGTT+TGG | - | chr4_4:81470356-81470375 | None:intergenic | 25.0% |
| !!! | TGAAAACACGATTTTTGATT+CGG | - | chr4_4:81470392-81470411 | None:intergenic | 25.0% |
| !! | TCAGTATCTAATTCTAAAGA+TGG | + | chr4_4:81470409-81470428 | Msa0708010:CDS | 25.0% |
| ! | TTGCCACTGTAAAATATTTA+AGG | + | chr4_4:81470447-81470466 | Msa0708010:CDS | 25.0% |
| ! | TGCCACTGTAAAATATTTAA+GGG | + | chr4_4:81470448-81470467 | Msa0708010:CDS | 25.0% |
| !! | TTCCCTTAAATATTTTACAG+TGG | - | chr4_4:81470453-81470472 | None:intergenic | 25.0% |
| ! | CTGTAAAATATTTAAGGGAA+AGG | + | chr4_4:81470453-81470472 | Msa0708010:CDS | 25.0% |
| ! | GAAGTATGTTATAATGAATC+TGG | + | chr4_4:81470603-81470622 | Msa0708010:intron | 25.0% |
| ! | TATGTTATAATGAATCTGGA+TGG | + | chr4_4:81470607-81470626 | Msa0708010:intron | 25.0% |
| !! | GTACATTTGACATCATTTTA+AGG | + | chr4_4:81470803-81470822 | Msa0708010:intron | 25.0% |
| ! | ACAAATAGCTTCAACAAATT+TGG | - | chr4_4:81470864-81470883 | None:intergenic | 25.0% |
| !!! | ATCATGCATATGCTATTTTA+AGG | - | chr4_4:81471133-81471152 | None:intergenic | 25.0% |
| ! | TAAAATAGCATATGCATGAT+AGG | + | chr4_4:81471133-81471152 | Msa0708010:intron | 25.0% |
| !! | CCAATAAAATGGTATTGAAA+AGG | - | chr4_4:81470057-81470076 | None:intergenic | 25.0% |
| !! | CCTTTTCAATACCATTTTAT+TGG | + | chr4_4:81470054-81470073 | Msa0708010:CDS | 25.0% |
| !!! | GTTGTTGTCACTTTATTTTT+CGG | - | chr4_4:81471517-81471536 | None:intergenic | 25.0% |
| !! | AAAAAAACTGTGTTTTCAGA+CGG | + | chr4_4:81471606-81471625 | Msa0708010:intron | 25.0% |
| ! | ATTTATGACATGTTCAAACA+AGG | + | chr4_4:81471727-81471746 | Msa0708010:intron | 25.0% |
| ! | TTGTAAGACTAGAATATTCT+TGG | + | chr4_4:81472150-81472169 | Msa0708010:intron | 25.0% |
| ! | AATGAAACAAAGCAACAATT+AGG | - | chr4_4:81472254-81472273 | None:intergenic | 25.0% |
| ! | TTCATTCTCGATAAATGTAA+TGG | + | chr4_4:81472268-81472287 | Msa0708010:intron | 25.0% |
| ! | TTGAAATAGTATAGCCAATA+TGG | - | chr4_4:81472302-81472321 | None:intergenic | 25.0% |
| ! | ATTTCAATTTCCAGTTTGAT+TGG | + | chr4_4:81472315-81472334 | Msa0708010:intron | 25.0% |
| !! | GAAACTTTGTTTGATTTCAT+TGG | + | chr4_4:81472484-81472503 | Msa0708010:intron | 25.0% |
| !!! | CTATTTCACACACAATTTTT+TGG | + | chr4_4:81472621-81472640 | Msa0708010:intron | 25.0% |
| !! | ACTTTTCGAAGACTTTTATA+AGG | - | chr4_4:81472657-81472676 | None:intergenic | 25.0% |
| ! | AATAAAGCTTACTATGTGTT+AGG | + | chr4_4:81472758-81472777 | Msa0708010:intron | 25.0% |
| ! | GAATGGCTAATAATAATTAG+GGG | - | chr4_4:81472933-81472952 | None:intergenic | 25.0% |
| ! | TTATTGGTGCAAAATCATAT+AGG | + | chr4_4:81472953-81472972 | Msa0708010:intron | 25.0% |
| ! | TCATATAGGTACAAAATCAT+AGG | + | chr4_4:81472967-81472986 | Msa0708010:intron | 25.0% |
| ! | CATATAGGTACAAAATCATA+GGG | + | chr4_4:81472968-81472987 | Msa0708010:intron | 25.0% |
| !!! | TTTTAGATTGTAAGCTTTGT+TGG | + | chr4_4:81473137-81473156 | Msa0708010:intron | 25.0% |
| ! | TGAAGCTAATATATACTAAG+GGG | - | chr4_4:81473527-81473546 | None:intergenic | 25.0% |
| ! | CATGAAGCTAATATATACTA+AGG | - | chr4_4:81473529-81473548 | None:intergenic | 25.0% |
| !! | TATTAGCTTCATGATTAGTT+TGG | + | chr4_4:81473536-81473555 | Msa0708010:intron | 25.0% |
| ! | AATTGTACTTGTTTATTGAG+AGG | + | chr4_4:81473579-81473598 | Msa0708010:intron | 25.0% |
| !!! | ATGCATCGATTATTTATGTA+TGG | - | chr4_4:81473788-81473807 | None:intergenic | 25.0% |
| ! | GAATTGCTAACATGTTAATT+AGG | + | chr4_4:81474035-81474054 | Msa0708010:intron | 25.0% |
| AACACTTGATATACAATCAG+AGG | + | chr4_4:81468752-81468771 | Msa0708010:intron | 30.0% | |
| TAAATCAGATACAGACTCAA+TGG | + | chr4_4:81468786-81468805 | Msa0708010:intron | 30.0% | |
| TCTTTCACACCTCTATATAA+AGG | - | chr4_4:81468956-81468975 | None:intergenic | 30.0% | |
| CAAATCAGGCAAAATATCAT+TGG | - | chr4_4:81469034-81469053 | None:intergenic | 30.0% | |
| ! | CAATGATATTTTGCCTGATT+TGG | + | chr4_4:81469032-81469051 | Msa0708010:intron | 30.0% |
| AAGAAAACAGCTTCAGAATA+CGG | - | chr4_4:81469125-81469144 | None:intergenic | 30.0% | |
| ! | TGTTTTCTTATCTTGTAGCA+TGG | + | chr4_4:81469136-81469155 | Msa0708010:intron | 30.0% |
| AAATTAGTGGAACTTTGCAA+CGG | - | chr4_4:81469270-81469289 | None:intergenic | 30.0% | |
| AAAACACAGCAGAAAATTAG+TGG | - | chr4_4:81469283-81469302 | None:intergenic | 30.0% | |
| GTTATCATCAAAACTCTTTG+AGG | + | chr4_4:81469722-81469741 | Msa0708010:intron | 30.0% | |
| !! | ATACTCTTTTATAGAGGCAT+GGG | - | chr4_4:81469805-81469824 | None:intergenic | 30.0% |
| ! | TGTTGAAATTGACTTAGTCA+TGG | + | chr4_4:81470167-81470186 | Msa0708010:intron | 30.0% |
| GTTCCCAAAACAAATGTAAT+TGG | - | chr4_4:81470324-81470343 | None:intergenic | 30.0% | |
| TTTACAGTGGCAAAGTAAAT+TGG | - | chr4_4:81470440-81470459 | None:intergenic | 30.0% | |
| TTAGTGTTTATAGGATCTCA+TGG | + | chr4_4:81470553-81470572 | Msa0708010:intron | 30.0% | |
| AACGTAAATGGTAACACATT+TGG | - | chr4_4:81470841-81470860 | None:intergenic | 30.0% | |
| ! | CAACAAATTTGGAACGTAAA+TGG | - | chr4_4:81470853-81470872 | None:intergenic | 30.0% |
| TTCCACTACATGATTAAATG+TGG | + | chr4_4:81471226-81471245 | Msa0708010:intron | 30.0% | |
| AACCACATTTAATCATGTAG+TGG | - | chr4_4:81471231-81471250 | None:intergenic | 30.0% | |
| GTGTACTTAAGATGAATTTG+CGG | + | chr4_4:81471286-81471305 | Msa0708010:intron | 30.0% | |
| TCAAAATTTCACACGGATTT+GGG | - | chr4_4:81471801-81471820 | None:intergenic | 30.0% | |
| !!! | TGAAATTTTGAGACGGATTT+CGG | + | chr4_4:81471810-81471829 | Msa0708010:intron | 30.0% |
| TTTGACTGATGAAATAGGAA+AGG | - | chr4_4:81471885-81471904 | None:intergenic | 30.0% | |
| TTTATTAGGGTTGTGAAAGA+GGG | - | chr4_4:81471918-81471937 | None:intergenic | 30.0% | |
| ! | TTTTATTAGGGTTGTGAAAG+AGG | - | chr4_4:81471919-81471938 | None:intergenic | 30.0% |
| !! | AATATTCTAGTCTTACAACC+TGG | - | chr4_4:81472148-81472167 | None:intergenic | 30.0% |
| TTGGTTCCAATCAACAATTA+GGG | - | chr4_4:81472204-81472223 | None:intergenic | 30.0% | |
| ! | TTTGGTTCCAATCAACAATT+AGG | - | chr4_4:81472205-81472224 | None:intergenic | 30.0% |
| TAATGGTTCCTATTCCATAT+TGG | + | chr4_4:81472285-81472304 | Msa0708010:intron | 30.0% | |
| TAGTATAGCCAATATGGAAT+AGG | - | chr4_4:81472296-81472315 | None:intergenic | 30.0% | |
| AAATATGTAGCCAATCAAAC+TGG | - | chr4_4:81472328-81472347 | None:intergenic | 30.0% | |
| ! | ACATGTTTAATTTACAGAGG+AGG | + | chr4_4:81472353-81472372 | Msa0708010:intron | 30.0% |
| !!! | TTGTTCTGAGGTTTTATGAA+TGG | + | chr4_4:81472519-81472538 | Msa0708010:intron | 30.0% |
| ! | TTCGAAGACTTTTATAAGGT+AGG | - | chr4_4:81472653-81472672 | None:intergenic | 30.0% |
| ! | TGATTTTGCACCAATAAGAA+TGG | - | chr4_4:81472950-81472969 | None:intergenic | 30.0% |
| !! | AGATAATTACACGCTACTTT+TGG | + | chr4_4:81473222-81473241 | Msa0708010:intron | 30.0% |
| TTAATTCTCATAGTAGCCTT+TGG | + | chr4_4:81473376-81473395 | Msa0708010:intron | 30.0% | |
| !!! | AGCCTTTGGTTTATTTTTTC+TGG | + | chr4_4:81473390-81473409 | Msa0708010:intron | 30.0% |
| CACCAGAAAAAATAAACCAA+AGG | - | chr4_4:81473395-81473414 | None:intergenic | 30.0% | |
| AGTAGTAACCAAAATAGCTT+TGG | - | chr4_4:81473495-81473514 | None:intergenic | 30.0% | |
| !!! | TTGTTTTAGATGTCTAGAAG+AGG | + | chr4_4:81473617-81473636 | Msa0708010:intron | 30.0% |
| ! | GATTGATTTATAGATACCTG+TGG | - | chr4_4:81473737-81473756 | None:intergenic | 30.0% |
| TGCTTTATATACAGTTCAGT+CGG | + | chr4_4:81473820-81473839 | Msa0708010:intron | 30.0% | |
| !!! | TCGCCAAATTTTTGAAATCA+AGG | + | chr4_4:81474109-81474128 | Msa0708010:CDS | 30.0% |
| !!! | CGCCAAATTTTTGAAATCAA+GGG | + | chr4_4:81474110-81474129 | Msa0708010:CDS | 30.0% |
| CTCCCTTGATTTCAAAAATT+TGG | - | chr4_4:81474115-81474134 | None:intergenic | 30.0% | |
| !!! | ATTTTTGAAATCAAGGGAGA+AGG | + | chr4_4:81474116-81474135 | Msa0708010:CDS | 30.0% |
| TTTCACAGATGTTGCACTAT+GGG | + | chr4_4:81468023-81468042 | Msa0708010:CDS | 35.0% | |
| GTAATATGTGATGTTGTGCA+AGG | + | chr4_4:81468227-81468246 | Msa0708010:intron | 35.0% | |
| !!! | GTGATTTTTGCTGTTTGAGT+TGG | + | chr4_4:81468259-81468278 | Msa0708010:intron | 35.0% |
| AAGGTGAGAAAAACACAAGA+AGG | + | chr4_4:81468334-81468353 | Msa0708010:intron | 35.0% | |
| AGGTGAGAAAAACACAAGAA+GGG | + | chr4_4:81468335-81468354 | Msa0708010:intron | 35.0% | |
| ! | GATCAGTGTGTTCAGTTTTT+AGG | - | chr4_4:81468397-81468416 | None:intergenic | 35.0% |
| TGATCAGAATCTAAATGCAG+CGG | + | chr4_4:81468447-81468466 | Msa0708010:intron | 35.0% | |
| ACGACACAAAGCAATTATAC+TGG | + | chr4_4:81468495-81468514 | Msa0708010:intron | 35.0% | |
| TACTCTTAGTGAAATCTCCT+TGG | - | chr4_4:81468563-81468582 | None:intergenic | 35.0% | |
| TTGATTGTGTTCTTGAGCAA+AGG | - | chr4_4:81468657-81468676 | None:intergenic | 35.0% | |
| GTCTTCACTCCTTTATATAG+AGG | + | chr4_4:81468944-81468963 | Msa0708010:intron | 35.0% | |
| GAAATCCATTCCTTATCCAA+AGG | + | chr4_4:81469080-81469099 | Msa0708010:intron | 35.0% | |
| ATGTTCCTTTGGATAAGGAA+TGG | - | chr4_4:81469088-81469107 | None:intergenic | 35.0% | |
| CATAGATGTTCCTTTGGATA+AGG | - | chr4_4:81469093-81469112 | None:intergenic | 35.0% | |
| !! | GTCATTTCAAAGGTGTTTGA+AGG | - | chr4_4:81469248-81469267 | None:intergenic | 35.0% |
| ! | CATACTCTTTTATAGAGGCA+TGG | - | chr4_4:81469806-81469825 | None:intergenic | 35.0% |
| CATGCCTCTATAAAAGAGTA+TGG | + | chr4_4:81469804-81469823 | Msa0708010:intron | 35.0% | |
| ! | GTGTCCATACTCTTTTATAG+AGG | - | chr4_4:81469811-81469830 | None:intergenic | 35.0% |
| !! | GCATATATTGGCGTTGTTTT+TGG | + | chr4_4:81470141-81470160 | Msa0708010:intron | 35.0% |
| CGTATATCAGACTCAAAAGT+GGG | - | chr4_4:81470221-81470240 | None:intergenic | 35.0% | |
| TCGTATATCAGACTCAAAAG+TGG | - | chr4_4:81470222-81470241 | None:intergenic | 35.0% | |
| ! | AGCGCCAATTACATTTGTTT+TGG | + | chr4_4:81470317-81470336 | Msa0708010:CDS | 35.0% |
| !! | GCGCCAATTACATTTGTTTT+GGG | + | chr4_4:81470318-81470337 | Msa0708010:CDS | 35.0% |
| !! | TCATGGTGGATTGATGAAAA+GGG | + | chr4_4:81470570-81470589 | Msa0708010:CDS | 35.0% |
| ! | CATAACCAACTACTGAGTTT+TGG | + | chr4_4:81470745-81470764 | Msa0708010:intron | 35.0% |
| CCAAAAAGTTTCACATCTCA+TGG | - | chr4_4:81470888-81470907 | None:intergenic | 35.0% | |
| ! | CCATGAGATGTGAAACTTTT+TGG | + | chr4_4:81470885-81470904 | Msa0708010:intron | 35.0% |
| TATGCATGATAGGCAACTTA+AGG | + | chr4_4:81471143-81471162 | Msa0708010:intron | 35.0% | |
| TACTTAAGATGAATTTGCGG+AGG | + | chr4_4:81471289-81471308 | Msa0708010:intron | 35.0% | |
| ACTTAAGATGAATTTGCGGA+GGG | + | chr4_4:81471290-81471309 | Msa0708010:intron | 35.0% | |
| !! | GGCTGATTTTGTGTTTTTGT+GGG | - | chr4_4:81471551-81471570 | None:intergenic | 35.0% |
| ! | GTGTTTTCAGACGGAATTTT+CGG | + | chr4_4:81471615-81471634 | Msa0708010:intron | 35.0% |
| !!! | GACGGATTGTCTGATTTTTT+CGG | + | chr4_4:81471637-81471656 | Msa0708010:intron | 35.0% |
| !!! | GATTGTCTGATTTTTTCGGA+CGG | + | chr4_4:81471641-81471660 | Msa0708010:intron | 35.0% |
| !!! | TGATTTTTTCGGACGGATTT+GGG | + | chr4_4:81471648-81471667 | Msa0708010:intron | 35.0% |
| !! | TATTTCAGACGATTTTGGGA+CGG | - | chr4_4:81471708-81471727 | None:intergenic | 35.0% |
| CTCAAAATTTCACACGGATT+TGG | - | chr4_4:81471802-81471821 | None:intergenic | 35.0% | |
| !! | ATCCGTGTGAAATTTTGAGA+CGG | + | chr4_4:81471803-81471822 | Msa0708010:intron | 35.0% |
| ATCCGTCTCAAAATTTCACA+CGG | - | chr4_4:81471808-81471827 | None:intergenic | 35.0% | |
| TTATTAGGGTTGTGAAAGAG+GGG | - | chr4_4:81471917-81471936 | None:intergenic | 35.0% | |
| ! | TTCACGTTTTCAATCTCTTC+AGG | + | chr4_4:81471994-81472013 | Msa0708010:intron | 35.0% |
| ! | CAATCTTTTGATCGTTTTCG+TGG | + | chr4_4:81472066-81472085 | Msa0708010:intron | 35.0% |
| ! | ACTTCAGGTTCAAATTCAAC+AGG | - | chr4_4:81472105-81472124 | None:intergenic | 35.0% |
| TTGGAACCCTAATTGTTGAT+TGG | + | chr4_4:81472195-81472214 | Msa0708010:intron | 35.0% | |
| !! | TTTGTTGGTTTGTTGCAAAG+AGG | + | chr4_4:81473152-81473171 | Msa0708010:intron | 35.0% |
| !!! | CAAAGAGGTCGTTGTTTTTA+TGG | + | chr4_4:81473167-81473186 | Msa0708010:intron | 35.0% |
| ! | TGTTTTTCCCTTTCTGTTAG+TGG | + | chr4_4:81473343-81473362 | Msa0708010:intron | 35.0% |
| ! | TACTGTTAGCACCTTCTTTT+TGG | + | chr4_4:81473415-81473434 | Msa0708010:intron | 35.0% |
| !!! | TTAGCACCTTCTTTTTGGTT+TGG | + | chr4_4:81473420-81473439 | Msa0708010:intron | 35.0% |
| !!! | TAGCACCTTCTTTTTGGTTT+GGG | + | chr4_4:81473421-81473440 | Msa0708010:intron | 35.0% |
| ! | TTGTACTGCCAAAGCTATTT+TGG | + | chr4_4:81473484-81473503 | Msa0708010:intron | 35.0% |
| !! | TAGCTTCATGATTAGTTTGG+AGG | + | chr4_4:81473539-81473558 | Msa0708010:intron | 35.0% |
| !! | TTCATGATTAGTTTGGAGGT+GGG | + | chr4_4:81473543-81473562 | Msa0708010:intron | 35.0% |
| TCCCTTTACCAATTGAGTAT+CGG | - | chr4_4:81473679-81473698 | None:intergenic | 35.0% | |
| TTTATAGATACCTGTGGAGA+TGG | - | chr4_4:81473731-81473750 | None:intergenic | 35.0% | |
| CGAATCCTAGCATCATATTT+AGG | - | chr4_4:81474092-81474111 | None:intergenic | 35.0% | |
| ATGCAGAAAATTCCGAATAC+AGG | + | chr4_4:81474177-81474196 | Msa0708010:CDS | 35.0% | |
| CTTTCACAGATGTTGCACTA+TGG | + | chr4_4:81468022-81468041 | Msa0708010:CDS | 40.0% | |
| TGGCTTATAAGTGTCTCTTG+AGG | + | chr4_4:81468068-81468087 | Msa0708010:CDS | 40.0% | |
| GGTGAGAAAAACACAAGAAG+GGG | + | chr4_4:81468336-81468355 | Msa0708010:intron | 40.0% | |
| GTGAGAAAAACACAAGAAGG+GGG | + | chr4_4:81468337-81468356 | Msa0708010:intron | 40.0% | |
| TGAGAAAAACACAAGAAGGG+GGG | + | chr4_4:81468338-81468357 | Msa0708010:intron | 40.0% | |
| ! | AAATCTCCTTGGAAGTGCAA+GGG | - | chr4_4:81468552-81468571 | None:intergenic | 40.0% |
| ATGCAGAACAATTTCAGCAG+AGG | + | chr4_4:81468858-81468877 | Msa0708010:intron | 40.0% | |
| ! | GGAGTGAAGACTTAGAGTTT+TGG | - | chr4_4:81468935-81468954 | None:intergenic | 40.0% |
| AAGCTTCAACAACGACTCTT+TGG | - | chr4_4:81469002-81469021 | None:intergenic | 40.0% | |
| CATAGGACAACAACCAAATC+AGG | - | chr4_4:81469048-81469067 | None:intergenic | 40.0% | |
| ATCCAAAGGAACATCTATGC+AGG | + | chr4_4:81469094-81469113 | Msa0708010:intron | 40.0% | |
| ATGGACACAAAACAGAGTAG+TGG | + | chr4_4:81469155-81469174 | Msa0708010:intron | 40.0% | |
| ! | ACAAAACAGAGTAGTGGAGA+AGG | + | chr4_4:81469161-81469180 | Msa0708010:intron | 40.0% |
| CTTTGCAACGGTCATTTCAA+AGG | - | chr4_4:81469258-81469277 | None:intergenic | 40.0% | |
| ACACTGCAAAAGCTGTCTAT+TGG | - | chr4_4:81469311-81469330 | None:intergenic | 40.0% | |
| TGGTGAAATGACTTCTGATG+AGG | + | chr4_4:81469381-81469400 | Msa0708010:intron | 40.0% | |
| ! | TGATGCAGCTTCTGATAATG+TGG | + | chr4_4:81469453-81469472 | Msa0708010:intron | 40.0% |
| !! | TTCAGGAGCACTATTTCTTC+AGG | + | chr4_4:81469493-81469512 | Msa0708010:intron | 40.0% |
| TGAAGCTTAGACGATTCTGA+AGG | - | chr4_4:81469586-81469605 | None:intergenic | 40.0% | |
| GGTTATTTATGCAGCACACT+TGG | + | chr4_4:81470075-81470094 | Msa0708010:intron | 40.0% | |
| CAATATATGCACCAACGTAG+TGG | - | chr4_4:81470131-81470150 | None:intergenic | 40.0% | |
| CACTACGTTGGTGCATATAT+TGG | + | chr4_4:81470129-81470148 | Msa0708010:intron | 40.0% | |
| GTGTTTATAGGATCTCATGG+TGG | + | chr4_4:81470556-81470575 | Msa0708010:intron | 40.0% | |
| !! | CTCATGGTGGATTGATGAAA+AGG | + | chr4_4:81470569-81470588 | Msa0708010:CDS | 40.0% |
| TCACTCCAAAACTCAGTAGT+TGG | - | chr4_4:81470753-81470772 | None:intergenic | 40.0% | |
| !!! | ACTACTGAGTTTTGGAGTGA+TGG | + | chr4_4:81470753-81470772 | Msa0708010:intron | 40.0% |
| !!! | CTACTGAGTTTTGGAGTGAT+GGG | + | chr4_4:81470754-81470773 | Msa0708010:intron | 40.0% |
| !!! | TACTGAGTTTTGGAGTGATG+GGG | + | chr4_4:81470755-81470774 | Msa0708010:intron | 40.0% |
| !! | TTTGTGTTTTTGTGGGTGTG+TGG | - | chr4_4:81471544-81471563 | None:intergenic | 40.0% |
| !! | CGGCTGATTTTGTGTTTTTG+TGG | - | chr4_4:81471552-81471571 | None:intergenic | 40.0% |
| ! | AGTCGTGCTTTTGTTAGGAT+CGG | - | chr4_4:81471572-81471591 | None:intergenic | 40.0% |
| ! | TTTCAGACGGAATTTTCGGA+CGG | + | chr4_4:81471619-81471638 | Msa0708010:intron | 40.0% |
| !!! | CTGATTTTTTCGGACGGATT+TGG | + | chr4_4:81471647-81471666 | Msa0708010:intron | 40.0% |
| !! | CGGATTTGGGACAGTTTTAA+CGG | + | chr4_4:81471661-81471680 | Msa0708010:intron | 40.0% |
| AAAATCCGTGCGAAATTCGT+GGG | - | chr4_4:81471759-81471778 | None:intergenic | 40.0% | |
| AATTTCACACGGATTTGGGA+CGG | - | chr4_4:81471797-81471816 | None:intergenic | 40.0% | |
| !!! | ATTTTGAGACGGATTTCGGA+CGG | + | chr4_4:81471814-81471833 | Msa0708010:intron | 40.0% |
| ! | GATCGTTTTCGTGGTTTTCT+TGG | + | chr4_4:81472075-81472094 | Msa0708010:intron | 40.0% |
| ATGTGTTAGGCTATGAAAGC+TGG | + | chr4_4:81472771-81472790 | Msa0708010:intron | 40.0% | |
| ! | TGCCTTCTTGATTTTCCTAC+TGG | + | chr4_4:81473079-81473098 | Msa0708010:intron | 40.0% |
| CACCAGTAGGAAAATCAAGA+AGG | - | chr4_4:81473084-81473103 | None:intergenic | 40.0% | |
| !!! | GTCGTTGTTTTTATGGCTAC+TGG | + | chr4_4:81473174-81473193 | Msa0708010:intron | 40.0% |
| !!! | TGCTGTTTTTACCGCTGTTT+TGG | + | chr4_4:81473266-81473285 | Msa0708010:intron | 40.0% |
| ACTGCTAAACACCAAAACAG+CGG | - | chr4_4:81473280-81473299 | None:intergenic | 40.0% | |
| TACCTCCCAAACCAAAAAGA+AGG | - | chr4_4:81473429-81473448 | None:intergenic | 40.0% | |
| GAAGCAATTGTTTGCTCAGT+TGG | + | chr4_4:81473455-81473474 | Msa0708010:intron | 40.0% | |
| !! | CTTCATGATTAGTTTGGAGG+TGG | + | chr4_4:81473542-81473561 | Msa0708010:intron | 40.0% |
| GCCGATACTCAATTGGTAAA+GGG | + | chr4_4:81473675-81473694 | Msa0708010:CDS | 40.0% | |
| CCAAAAACTTACGTCAGCAA+AGG | - | chr4_4:81473895-81473914 | None:intergenic | 40.0% | |
| ! | CCTTTGCTGACGTAAGTTTT+TGG | + | chr4_4:81473892-81473911 | Msa0708010:intron | 40.0% |
| GGCAACCTAAATATGATGCT+AGG | + | chr4_4:81474084-81474103 | Msa0708010:CDS | 40.0% | |
| CTCTTGATACATCATACCTC+TGG | - | chr4_4:81474147-81474166 | None:intergenic | 40.0% | |
| GAGGTATGATGTATCAAGAG+AGG | + | chr4_4:81474147-81474166 | Msa0708010:CDS | 40.0% | |
| GATGTACTTTGGCCTGTATT+CGG | - | chr4_4:81474192-81474211 | None:intergenic | 40.0% | |
| ! | ATTGGCTTCGAGATGTACTT+TGG | - | chr4_4:81474203-81474222 | None:intergenic | 40.0% |
| ACATCTCGAAGCCAATTTAG+AGG | + | chr4_4:81474207-81474226 | Msa0708010:CDS | 40.0% | |
| CATCTCGAAGCCAATTTAGA+GGG | + | chr4_4:81474208-81474227 | Msa0708010:exon | 40.0% | |
| ACAACATCTGCCCTCTAAAT+TGG | - | chr4_4:81474221-81474240 | None:intergenic | 40.0% | |
| CACAATCAACTGCACAAACA+GGG | - | chr4_4:81474253-81474272 | None:intergenic | 40.0% | |
| ACACAATCAACTGCACAAAC+AGG | - | chr4_4:81474254-81474273 | None:intergenic | 40.0% | |
| AGTGTCTCTTGAGGCTTAAG+TGG | + | chr4_4:81468077-81468096 | Msa0708010:CDS | 45.0% | |
| TGGATGGTACTCGACATGAT+AGG | - | chr4_4:81468107-81468126 | None:intergenic | 45.0% | |
| CTTATCGCACAAACCTCATC+TGG | - | chr4_4:81468127-81468146 | None:intergenic | 45.0% | |
| GAGAAAAACACAAGAAGGGG+GGG | + | chr4_4:81468339-81468358 | Msa0708010:intron | 45.0% | |
| !! | TACTGGTTCCTTCCACAATC+CGG | + | chr4_4:81468512-81468531 | Msa0708010:intron | 45.0% |
| ! | AATCTCCTTGGAAGTGCAAG+GGG | - | chr4_4:81468551-81468570 | None:intergenic | 45.0% |
| ! | GAAATCTCCTTGGAAGTGCA+AGG | - | chr4_4:81468553-81468572 | None:intergenic | 45.0% |
| ! | TAGCTTGTGTGCTTGAGCAA+AGG | - | chr4_4:81468627-81468646 | None:intergenic | 45.0% |
| ! | AAACAGAGTAGTGGAGAAGG+TGG | + | chr4_4:81469164-81469183 | Msa0708010:intron | 45.0% |
| ! | GAAGGCATGTGCTTGCAATT+TGG | - | chr4_4:81469230-81469249 | None:intergenic | 45.0% |
| TCCAGTTGATCTTCAGCTTC+TGG | + | chr4_4:81469361-81469380 | Msa0708010:intron | 45.0% | |
| ACCAGAAGCTGAAGATCAAC+TGG | - | chr4_4:81469365-81469384 | None:intergenic | 45.0% | |
| ! | GCTTCTGATAATGTGGCTTC+TGG | + | chr4_4:81469460-81469479 | Msa0708010:intron | 45.0% |
| ATAGTGCTCCTGAAGACAAG+AGG | - | chr4_4:81469487-81469506 | None:intergenic | 45.0% | |
| TAGTCATGCTTCCACTACGT+TGG | + | chr4_4:81470117-81470136 | Msa0708010:intron | 45.0% | |
| ! | AGCAGAGTCGTGCTTTTGTT+AGG | - | chr4_4:81471577-81471596 | None:intergenic | 45.0% |
| !!! | GACGATTTTGGGACGGATTT+GGG | - | chr4_4:81471701-81471720 | None:intergenic | 45.0% |
| !!! | AGACGATTTTGGGACGGATT+TGG | - | chr4_4:81471702-81471721 | None:intergenic | 45.0% |
| TTGTTCCCACGAATTTCGCA+CGG | + | chr4_4:81471751-81471770 | Msa0708010:intron | 45.0% | |
| GAAAATCCGTGCGAAATTCG+TGG | - | chr4_4:81471760-81471779 | None:intergenic | 45.0% | |
| TTCAGGTCTCAAGCTCTTCA+AGG | + | chr4_4:81472011-81472030 | Msa0708010:intron | 45.0% | |
| ! | TAGTCTTACAACCTGGCACT+AGG | - | chr4_4:81472141-81472160 | None:intergenic | 45.0% |
| CAGCAGTTGTATACACCAGT+AGG | - | chr4_4:81473097-81473116 | None:intergenic | 45.0% | |
| AAACAGCACAGAAACACAGC+TGG | - | chr4_4:81473254-81473273 | None:intergenic | 45.0% | |
| TCCCTTTCTGTTAGTGGCTA+AGG | + | chr4_4:81473349-81473368 | Msa0708010:intron | 45.0% | |
| CCCTTAGCCACTAACAGAAA+GGG | - | chr4_4:81473353-81473372 | None:intergenic | 45.0% | |
| CCCTTTCTGTTAGTGGCTAA+GGG | + | chr4_4:81473350-81473369 | Msa0708010:intron | 45.0% | |
| TCCCTTAGCCACTAACAGAA+AGG | - | chr4_4:81473354-81473373 | None:intergenic | 45.0% | |
| !!! | CACCTTCTTTTTGGTTTGGG+AGG | + | chr4_4:81473424-81473443 | Msa0708010:intron | 45.0% |
| !!! | TGGAGGTGGGTAGTTTGTTT+TGG | + | chr4_4:81473556-81473575 | Msa0708010:intron | 45.0% |
| !! | TCTAGAAGAGGTGCTAACAG+AGG | + | chr4_4:81473629-81473648 | Msa0708010:CDS | 45.0% |
| GGCCGATACTCAATTGGTAA+AGG | + | chr4_4:81473674-81473693 | Msa0708010:CDS | 45.0% | |
| CTGTGGAGATGGTATAGTAG+GGG | - | chr4_4:81473720-81473739 | None:intergenic | 45.0% | |
| CCTGTGGAGATGGTATAGTA+GGG | - | chr4_4:81473721-81473740 | None:intergenic | 45.0% | |
| ACCTGTGGAGATGGTATAGT+AGG | - | chr4_4:81473722-81473741 | None:intergenic | 45.0% | |
| AACTGCACAAACAGGGATAG+GGG | - | chr4_4:81474246-81474265 | None:intergenic | 45.0% | |
| CAACTGCACAAACAGGGATA+GGG | - | chr4_4:81474247-81474266 | None:intergenic | 45.0% | |
| TCAACTGCACAAACAGGGAT+AGG | - | chr4_4:81474248-81474267 | None:intergenic | 45.0% | |
| !!! | TTTTATTAAAATTTTTATTG+GGG | - | chr4_4:81469983-81470002 | None:intergenic | 5.0% |
| TGTCGAGTACCATCCAGATG+AGG | + | chr4_4:81468111-81468130 | Msa0708010:CDS | 50.0% | |
| TCGCACAAACCTCATCTGGA+TGG | - | chr4_4:81468123-81468142 | None:intergenic | 50.0% | |
| GACTACTTCCGGATTGTGGA+AGG | - | chr4_4:81468523-81468542 | None:intergenic | 50.0% | |
| ACTGGACTACTTCCGGATTG+TGG | - | chr4_4:81468527-81468546 | None:intergenic | 50.0% | |
| ! | ATCTCCTTGGAAGTGCAAGG+GGG | - | chr4_4:81468550-81468569 | None:intergenic | 50.0% |
| TCTTGCAGTTGTGCTTGAGC+AGG | - | chr4_4:81468687-81468706 | None:intergenic | 50.0% | |
| ! | ACAACGACTCTTTGGTGTGC+TGG | - | chr4_4:81468994-81469013 | None:intergenic | 50.0% |
| CGCCTGCATAGATGTTCCTT+TGG | - | chr4_4:81469099-81469118 | None:intergenic | 50.0% | |
| CTTCTGGACCTCTTGTCTTC+AGG | + | chr4_4:81469476-81469495 | Msa0708010:intron | 50.0% | |
| ! | GAGCGCGTTTTACTCTCTTC+AGG | + | chr4_4:81469515-81469534 | Msa0708010:intron | 50.0% |
| TTCAGGAGCAGCTTGACTTC+AGG | + | chr4_4:81469532-81469551 | Msa0708010:intron | 50.0% | |
| AGGCAATACGCTCCTGAAAG+TGG | - | chr4_4:81469566-81469585 | None:intergenic | 50.0% | |
| GGAGGTCTTCTTGGAACTTC+AGG | - | chr4_4:81472120-81472139 | None:intergenic | 50.0% | |
| TCTTACAACCTGGCACTAGG+AGG | - | chr4_4:81472138-81472157 | None:intergenic | 50.0% | |
| CCTCTAGTGCTAATGCTGCA+AGG | - | chr4_4:81472718-81472737 | None:intergenic | 50.0% | |
| CCTTGCAGCATTAGCACTAG+AGG | + | chr4_4:81472715-81472734 | Msa0708010:intron | 50.0% | |
| !! | AGAAGAGGTGCTAACAGAGG+TGG | + | chr4_4:81473632-81473651 | Msa0708010:CDS | 50.0% |
| GGAAGGACTTTATCCTCTCG+AGG | + | chr4_4:81473653-81473672 | Msa0708010:CDS | 50.0% | |
| !! | AATTGAGTATCGGCCTCGAG+AGG | - | chr4_4:81473669-81473688 | None:intergenic | 50.0% |
| TCTCGAGGCCGATACTCAAT+TGG | + | chr4_4:81473668-81473687 | Msa0708010:CDS | 50.0% | |
| CCCTACTATACCATCTCCAC+AGG | + | chr4_4:81473718-81473737 | Msa0708010:CDS | 50.0% | |
| AAGGGAGAAGGTAGATCCAG+AGG | + | chr4_4:81474128-81474147 | Msa0708010:CDS | 50.0% | |
| AAGGGGGACTGGACTACTTC+CGG | - | chr4_4:81468534-81468553 | None:intergenic | 55.0% | |
| GCAGCTTCTGCAGCTTCTGA+TGG | + | chr4_4:81469418-81469437 | Msa0708010:intron | 55.0% | |
| !! | CAGGAGCGCTTTCCACTTTC+AGG | + | chr4_4:81469551-81469570 | Msa0708010:intron | 55.0% |
| CTGGCACTAGGAGGTCTTCT+TGG | - | chr4_4:81472129-81472148 | None:intergenic | 55.0% | |
| CAAGAAGACCTCCTAGTGCC+AGG | + | chr4_4:81472127-81472146 | Msa0708010:intron | 55.0% | |
| ! | GAGGTGCTAACAGAGGTGGA+AGG | + | chr4_4:81473636-81473655 | Msa0708010:CDS | 55.0% |
| ! | CTTGGAAGTGCAAGGGGGAC+TGG | - | chr4_4:81468545-81468564 | None:intergenic | 60.0% |
| CAGTCCCCCTTGCACTTCCA+AGG | + | chr4_4:81468543-81468562 | Msa0708010:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 81467987 | 81474350 | 81467987 | ID=Msa0708010;Name=Msa0708010 |
| chr4_4 | mRNA | 81467987 | 81474350 | 81467987 | ID=Msa0708010-mRNA-1;Parent=Msa0708010;Name=Msa0708010-mRNA-1;_AED=0.29;_eAED=0.29;_QI=32|0.33|0.42|1|0.16|0.57|7|124|227 |
| chr4_4 | exon | 81467987 | 81468132 | 81467987 | ID=Msa0708010-mRNA-1:exon:26698;Parent=Msa0708010-mRNA-1 |
| chr4_4 | exon | 81470020 | 81470075 | 81470020 | ID=Msa0708010-mRNA-1:exon:26699;Parent=Msa0708010-mRNA-1 |
| chr4_4 | exon | 81470089 | 81470096 | 81470089 | ID=Msa0708010-mRNA-1:exon:26700;Parent=Msa0708010-mRNA-1 |
| chr4_4 | exon | 81470279 | 81470474 | 81470279 | ID=Msa0708010-mRNA-1:exon:26701;Parent=Msa0708010-mRNA-1 |
| chr4_4 | exon | 81470566 | 81470605 | 81470566 | ID=Msa0708010-mRNA-1:exon:26702;Parent=Msa0708010-mRNA-1 |
| chr4_4 | exon | 81473626 | 81473739 | 81473626 | ID=Msa0708010-mRNA-1:exon:26703;Parent=Msa0708010-mRNA-1 |
| chr4_4 | exon | 81474071 | 81474350 | 81474071 | ID=Msa0708010-mRNA-1:exon:26704;Parent=Msa0708010-mRNA-1 |
| chr4_4 | five_prime_UTR | 81467987 | 81468018 | 81467987 | ID=Msa0708010-mRNA-1:five_prime_utr;Parent=Msa0708010-mRNA-1 |
| chr4_4 | CDS | 81468019 | 81468132 | 81468019 | ID=Msa0708010-mRNA-1:cds;Parent=Msa0708010-mRNA-1 |
| chr4_4 | CDS | 81470020 | 81470075 | 81470020 | ID=Msa0708010-mRNA-1:cds;Parent=Msa0708010-mRNA-1 |
| chr4_4 | CDS | 81470089 | 81470096 | 81470089 | ID=Msa0708010-mRNA-1:cds;Parent=Msa0708010-mRNA-1 |
| chr4_4 | CDS | 81470279 | 81470474 | 81470279 | ID=Msa0708010-mRNA-1:cds;Parent=Msa0708010-mRNA-1 |
| chr4_4 | CDS | 81470566 | 81470605 | 81470566 | ID=Msa0708010-mRNA-1:cds;Parent=Msa0708010-mRNA-1 |
| chr4_4 | CDS | 81473626 | 81473739 | 81473626 | ID=Msa0708010-mRNA-1:cds;Parent=Msa0708010-mRNA-1 |
| chr4_4 | CDS | 81474071 | 81474226 | 81474071 | ID=Msa0708010-mRNA-1:cds;Parent=Msa0708010-mRNA-1 |
| chr4_4 | three_prime_UTR | 81474227 | 81474350 | 81474227 | ID=Msa0708010-mRNA-1:three_prime_utr;Parent=Msa0708010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
