AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0766630


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0766630 MtrunA17_Chr5g0442341 68.142 226 13 2 14 180 49 274 2.72e-98 295
Msa0766630 MtrunA17_Chr3g0095231 58.407 226 35 2 14 180 49 274 4.88e-82 254
Msa0766630 MtrunA17_Chr3g0109701 50.667 225 52 3 14 179 49 273 7.47e-65 209
Msa0766630 MtrunA17_Chr1g0204731 87.273 55 7 0 176 230 81 135 5.84e-24 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0766630 AT2G43020.1 56.637 226 39 2 14 180 49 274 4.88e-79 246
Msa0766630 AT3G59050.1 55.310 226 42 2 14 180 50 275 8.81e-75 235
Msa0766630 AT1G65840.1 57.595 158 52 2 14 156 50 207 2.75e-58 192

Find 61 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTATCTTATCAAGTATTTAT+TGG 0.232767 5_2:+28547721 Msa0766630:CDS
GGAACTCTATTATAGTATTT+AGG 0.245094 5_2:+28547766 Msa0766630:CDS
TATCTTATCAAGTATTTATT+GGG 0.279015 5_2:+28547722 Msa0766630:CDS
GCTAATAATGACCTCAGTTC+TGG 0.323376 5_2:-28546497 None:intergenic
ATTCACACTGATTACTCATT+TGG 0.325638 5_2:+28545797 Msa0766630:CDS
GGCTCCATTGATTGGGAGGT+TGG 0.331541 5_2:+28545979 Msa0766630:CDS
AATCCTCTGGCTCCATTGAT+TGG 0.348932 5_2:+28545971 Msa0766630:CDS
GTGAAGGTGACTACTGAAAA+TGG 0.357159 5_2:+28546967 Msa0766630:CDS
TCTTCGTTGTAGCAGAGTTC+TGG 0.379854 5_2:+28544547 Msa0766630:CDS
GCTCCATTGATTGGGAGGTT+GGG 0.395130 5_2:+28545980 Msa0766630:CDS
AAGATAACTAGGGGATATAA+TGG 0.397956 5_2:+28546943 Msa0766630:CDS
GTTGGAGGGGCTTTCACATA+AGG 0.402309 5_2:+28546605 Msa0766630:CDS
TGTCCTATACGATCATGATT+TGG 0.402825 5_2:+28546036 Msa0766630:CDS
GTTCTGGCGTGGCAAATTGC+AGG 0.406375 5_2:+28544563 Msa0766630:CDS
ATCCTCTGGCTCCATTGATT+GGG 0.431803 5_2:+28545972 Msa0766630:CDS
TACTACTGGTGTGCCGCCCT+TGG 0.436969 5_2:+28547491 Msa0766630:CDS
AATTGAAAGTGCACGAAGAA+TGG 0.438137 5_2:-28546459 None:intergenic
TTTCCAAATCATGATCGTAT+AGG 0.448434 5_2:-28546039 None:intergenic
CATGATGCACCTAGGTCAAC+AGG 0.448585 5_2:-28545824 None:intergenic
GAATGGAGGGCTTTCACATA+AGG 0.459089 5_2:+28546649 Msa0766630:CDS
CAATTGTATCTATCTTTCAA+TGG 0.466749 5_2:+28547585 Msa0766630:CDS
CATTATTGGATGCAGGTTGG+AGG 0.468941 5_2:+28546590 Msa0766630:intron
AATGGGAAAACATTTGTTGC+TGG 0.472005 5_2:+28546985 Msa0766630:CDS
ATTATTGGATGCAGGTTGGA+GGG 0.474950 5_2:+28546591 Msa0766630:intron
TTCTGCCACCAAGTCTATCC+TGG 0.476135 5_2:-28545775 None:intergenic
CAGGAGTCCATGTCTACTAC+TGG 0.477679 5_2:+28547477 Msa0766630:intron
TTGAAGCACTTGATTGAAAG+TGG 0.483841 5_2:+28547558 Msa0766630:CDS
CTCTGGCTCCATTGATTGGG+AGG 0.493843 5_2:+28545975 Msa0766630:CDS
AGTCCCAACCTCCCAATCAA+TGG 0.497011 5_2:-28545983 None:intergenic
ATCTCAGTATAAGAAAGTTA+AGG 0.499204 5_2:+28547745 Msa0766630:CDS
GCCGCCCTTGGTTTATGAAA+AGG 0.503373 5_2:+28547503 Msa0766630:CDS
TCAGGGCGACAAAGATAACT+AGG 0.506302 5_2:+28546932 Msa0766630:intron
CTGTTGACCTAGGTGCATCA+TGG 0.509864 5_2:+28545825 Msa0766630:CDS
TCAGTGGTATTTATGCAGAA+TGG 0.515557 5_2:+28546632 Msa0766630:CDS
TTATTGGATGCAGGTTGGAG+GGG 0.515630 5_2:+28546592 Msa0766630:intron
GAATCAAGTTCCACAAGAGT+TGG 0.536968 5_2:+28546253 Msa0766630:CDS
TGAAGGTGACTACTGAAAAT+GGG 0.540274 5_2:+28546968 Msa0766630:CDS
TCCTCACACGTACGGTAAAG+AGG 0.540915 5_2:-28546007 None:intergenic
GAATTCCAGGATAGACTTGG+TGG 0.542101 5_2:+28545770 Msa0766630:CDS
CAGGGCGACAAAGATAACTA+GGG 0.545052 5_2:+28546933 Msa0766630:intron
TTAGAATTCCAGGATAGACT+TGG 0.554102 5_2:+28545767 Msa0766630:CDS
GCAGACAGATAATGTACGAC+AGG 0.565366 5_2:+28546418 Msa0766630:intron
TTTCACATAAGGTGCTTCAG+TGG 0.588427 5_2:+28546616 Msa0766630:CDS
GTGGTATTTATGCAGAATGG+AGG 0.590217 5_2:+28546635 Msa0766630:CDS
CGGCACACCAGTAGTAGACA+TGG 0.592941 5_2:-28547484 None:intergenic
CTCCCAATCAATGGAGCCAG+AGG 0.593671 5_2:-28545974 None:intergenic
TGGTATTTATGCAGAATGGA+GGG 0.601193 5_2:+28546636 Msa0766630:CDS
CAGAGTTATCCTCACACGTA+CGG 0.601554 5_2:-28546015 None:intergenic
TATACGATCATGATTTGGAA+AGG 0.602711 5_2:+28546041 Msa0766630:CDS
TAGGGGATATAATGGAGTGA+AGG 0.609002 5_2:+28546951 Msa0766630:CDS
TGATTATGATTCAGGTTGCA+TGG 0.611159 5_2:+28545935 Msa0766630:intron
AGTTTGCAATGAGAATCCTC+TGG 0.615479 5_2:+28545958 Msa0766630:CDS
ACTTATGTAACCAACTCTTG+TGG 0.615750 5_2:-28546263 None:intergenic
ACCTCTTTACCGTACGTGTG+AGG 0.617863 5_2:+28546006 Msa0766630:CDS
AATTAATAAGTGAAATGGCA+AGG 0.622571 5_2:+28544520 None:intergenic
TGGTGATGAAGTTGTACTGA+AGG 0.628038 5_2:+28547605 Msa0766630:CDS
GTTGTAGCAGAGTTCTGGCG+TGG 0.632405 5_2:+28544552 Msa0766630:CDS
GCTGCTAATGCAGTGTACAT+CGG 0.647239 5_2:+28547525 Msa0766630:CDS
ATCTTTACCATGATGCACCT+AGG 0.655995 5_2:-28545832 None:intergenic
TTGAAAGAAAGCCAGAACTG+AGG 0.657435 5_2:+28546486 Msa0766630:CDS
AGGGCGACAAAGATAACTAG+GGG 0.700993 5_2:+28546934 Msa0766630:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTTATTAATTATGTATTTA+TGG + chr5_2:28544777-28544796 Msa0766630:intron 10.0%
!!! TATAATTTGATTTTCATTAT+TGG + chr5_2:28546576-28546595 Msa0766630:intron 10.0%
!! ACATAATTAATAACTAAAGA+TGG - chr5_2:28544772-28544791 None:intergenic 15.0%
!! TTATGTGTTTCATTTAATTA+CGG + chr5_2:28544986-28545005 Msa0766630:intron 15.0%
!! AAAAAAATAATTAAAGGAGA+TGG - chr5_2:28545641-28545660 None:intergenic 15.0%
!! GAGGAAAAAAAAATAATTAA+AGG - chr5_2:28545647-28545666 None:intergenic 15.0%
!!! TGCATTTTTTTGTTATTATT+TGG + chr5_2:28546068-28546087 Msa0766630:intron 15.0%
!! AATGGTATATTATTTGATAT+GGG + chr5_2:28546173-28546192 Msa0766630:intron 15.0%
!!! TATGATTTATGATGATTTTA+AGG + chr5_2:28547323-28547342 Msa0766630:intron 15.0%
!! TATCTTATCAAGTATTTATT+GGG + chr5_2:28547722-28547741 Msa0766630:CDS 15.0%
!!! TTTCTAGTAACTTTTACTTA+CGG + chr5_2:28545136-28545155 Msa0766630:intron 20.0%
!!! TTTTATTTTAGCATTGAAAG+TGG + chr5_2:28545911-28545930 Msa0766630:intron 20.0%
!! GAATGGTATATTATTTGATA+TGG + chr5_2:28546172-28546191 Msa0766630:intron 20.0%
!!! ATTTGTTTGAAGTTATGTTT+TGG + chr5_2:28546851-28546870 Msa0766630:intron 20.0%
!!! TTTTTCTTTGAGAAGATATT+TGG + chr5_2:28547124-28547143 Msa0766630:intron 20.0%
!! CTATCTTATCAAGTATTTAT+TGG + chr5_2:28547721-28547740 Msa0766630:CDS 20.0%
!!! TTGTTTGTTGTTTCGTAAAT+TGG + chr5_2:28544590-28544609 Msa0766630:intron 25.0%
!!! GTATTTTAGTTTTGTTGCTT+TGG + chr5_2:28544678-28544697 Msa0766630:intron 25.0%
! CTAATTGCAATCTATTTCAT+TGG + chr5_2:28545359-28545378 Msa0766630:intron 25.0%
!! TGATTACGATTGTTGAATTT+TGG + chr5_2:28545402-28545421 Msa0766630:intron 25.0%
!! GCTTTGTTAGAGTTTAAAAT+TGG + chr5_2:28545505-28545524 Msa0766630:intron 25.0%
!! AGTTTAAAATTGGATTTGAC+TGG + chr5_2:28545515-28545534 Msa0766630:intron 25.0%
! AATGTTTAAATGAGAAGAAG+AGG - chr5_2:28545666-28545685 None:intergenic 25.0%
! ACAACTCTCAATACAAATAA+AGG - chr5_2:28545711-28545730 None:intergenic 25.0%
!!! ATTTGAAATGATTTTGCAAG+AGG + chr5_2:28546295-28546314 Msa0766630:intron 25.0%
!! ATGAGCTTTGATAAAATGAA+TGG - chr5_2:28546546-28546565 None:intergenic 25.0%
! ATTCAATATCACTGAAATGT+TGG + chr5_2:28546723-28546742 Msa0766630:intron 25.0%
! TTCAATATCACTGAAATGTT+GGG + chr5_2:28546724-28546743 Msa0766630:intron 25.0%
!!! TTTGATGATACCTATTTTCA+GGG + chr5_2:28546915-28546934 Msa0766630:intron 25.0%
! GAAATGTGATTATAACATCA+TGG + chr5_2:28547190-28547209 Msa0766630:intron 25.0%
! TTATGCTTTCTTAGAAAGTT+TGG + chr5_2:28547227-28547246 Msa0766630:intron 25.0%
!!! GATTTTAAGAGAAGTGATTT+TGG + chr5_2:28547249-28547268 Msa0766630:intron 25.0%
!!! TTTAATCTCTTTGATTTGCA+TGG + chr5_2:28547284-28547303 Msa0766630:intron 25.0%
!!! TTAATCTCTTTGATTTGCAT+GGG + chr5_2:28547285-28547304 Msa0766630:intron 25.0%
! CAATTGTATCTATCTTTCAA+TGG + chr5_2:28547585-28547604 Msa0766630:CDS 25.0%
! ATCTCAGTATAAGAAAGTTA+AGG + chr5_2:28547745-28547764 Msa0766630:CDS 25.0%
!! TTTGTTGTTTCGTAAATTGG+CGG + chr5_2:28544593-28544612 Msa0766630:intron 30.0%
!!! TTTTGTTGCTTTGGAATGTT+TGG + chr5_2:28544687-28544706 Msa0766630:intron 30.0%
ACCATTGTTTCATATTAGTG+TGG + chr5_2:28544844-28544863 Msa0766630:intron 30.0%
CCATTGTTTCATATTAGTGT+GGG + chr5_2:28544845-28544864 Msa0766630:intron 30.0%
TTTCATATTAGTGTGGGTAT+TGG + chr5_2:28544851-28544870 Msa0766630:intron 30.0%
! AACTTTTACTTACGGATATG+TGG + chr5_2:28545144-28545163 Msa0766630:intron 30.0%
TTACGGATATGTGGATTTAT+AGG + chr5_2:28545153-28545172 Msa0766630:intron 30.0%
ATATGTGGATTTATAGGTGA+GGG + chr5_2:28545159-28545178 Msa0766630:intron 30.0%
TTCTTCTGACTTTAAGTCTA+GGG - chr5_2:28545186-28545205 None:intergenic 30.0%
ATTCTTCTGACTTTAAGTCT+AGG - chr5_2:28545187-28545206 None:intergenic 30.0%
!! TCTGTTTCTGTTATTTGCTA+TGG + chr5_2:28545257-28545276 Msa0766630:intron 30.0%
!! CTGTTTCTGTTATTTGCTAT+GGG + chr5_2:28545258-28545277 Msa0766630:intron 30.0%
!!! TTGTTGAATTTTGGCTCAAT+AGG + chr5_2:28545411-28545430 Msa0766630:intron 30.0%
!! AAAGCCATTTTATGCTATCT+TGG + chr5_2:28545461-28545480 Msa0766630:intron 30.0%
!! AAGCCATTTTATGCTATCTT+GGG + chr5_2:28545462-28545481 Msa0766630:intron 30.0%
TAACCCAAGATAGCATAAAA+TGG - chr5_2:28545468-28545487 None:intergenic 30.0%
!!! AGTTCACTACTTTTTTGTTC+AGG + chr5_2:28545736-28545755 Msa0766630:intron 30.0%
! ATTCACACTGATTACTCATT+TGG + chr5_2:28545797-28545816 Msa0766630:CDS 30.0%
TTTCCAAATCATGATCGTAT+AGG - chr5_2:28546042-28546061 None:intergenic 30.0%
! TATACGATCATGATTTGGAA+AGG + chr5_2:28546041-28546060 Msa0766630:CDS 30.0%
! AGCTTTGATAAAATGAATGG+TGG - chr5_2:28546543-28546562 None:intergenic 30.0%
! TGATTTTCATTATTGGATGC+AGG + chr5_2:28546583-28546602 Msa0766630:intron 30.0%
AAACTGTGTTCAAGATGTTT+GGG + chr5_2:28546763-28546782 Msa0766630:intron 30.0%
!! CTTTGATGATACCTATTTTC+AGG + chr5_2:28546914-28546933 Msa0766630:intron 30.0%
AAGATAACTAGGGGATATAA+TGG + chr5_2:28546943-28546962 Msa0766630:CDS 30.0%
AAAACATTAATTGTCACACC+CGG + chr5_2:28547415-28547434 Msa0766630:intron 30.0%
! TTGTACTGAAGGATGTTTTA+GGG + chr5_2:28547616-28547635 Msa0766630:intron 30.0%
! GAAGTTAGAACCATGAATTT+TGG + chr5_2:28547689-28547708 Msa0766630:intron 30.0%
GTTCTAATCTCCAAAATTCA+TGG - chr5_2:28547702-28547721 None:intergenic 30.0%
!! TTGTTGTTTCGTAAATTGGC+GGG + chr5_2:28544594-28544613 Msa0766630:intron 35.0%
CCCACACTAATATGAAACAA+TGG - chr5_2:28544848-28544867 None:intergenic 35.0%
CTAGTAAGTGGTACAAGTAA+TGG - chr5_2:28544889-28544908 None:intergenic 35.0%
ATCAAACATGCTCTAGTAAG+TGG - chr5_2:28544901-28544920 None:intergenic 35.0%
TTACGGATCTTGAAAAGTTG+TGG + chr5_2:28545003-28545022 Msa0766630:intron 35.0%
TTTATGAGTCATCATCCTCT+TGG + chr5_2:28545102-28545121 Msa0766630:intron 35.0%
GAAAAAAATATCGAGCCAAG+AGG - chr5_2:28545120-28545139 None:intergenic 35.0%
GATATGTGGATTTATAGGTG+AGG + chr5_2:28545158-28545177 Msa0766630:intron 35.0%
AATATGTGTGTCTACGAGTT+TGG + chr5_2:28545204-28545223 Msa0766630:intron 35.0%
TTGGGTTATACAACTTCACT+TGG + chr5_2:28545480-28545499 Msa0766630:intron 35.0%
ATATGTCACCATGTGGAAAT+GGG - chr5_2:28545584-28545603 None:intergenic 35.0%
TATGTTCATATGTCACCATG+TGG - chr5_2:28545591-28545610 None:intergenic 35.0%
!!! GGTCATTCTTTTAGAATTCC+AGG + chr5_2:28545757-28545776 Msa0766630:intron 35.0%
TTAGAATTCCAGGATAGACT+TGG + chr5_2:28545767-28545786 Msa0766630:CDS 35.0%
AAAGTGGCTGATTATGATTC+AGG + chr5_2:28545927-28545946 Msa0766630:intron 35.0%
!! TGATTATGATTCAGGTTGCA+TGG + chr5_2:28545935-28545954 Msa0766630:intron 35.0%
TGTCCTATACGATCATGATT+TGG + chr5_2:28546036-28546055 Msa0766630:CDS 35.0%
! TATGTGCTTTTCGATATGGA+GGG + chr5_2:28546230-28546249 Msa0766630:CDS 35.0%
ACTTATGTAACCAACTCTTG+TGG - chr5_2:28546266-28546285 None:intergenic 35.0%
! CAAGAGTTGGTTACATAAGT+TGG + chr5_2:28546266-28546285 Msa0766630:intron 35.0%
! AATTGAAAGTGCACGAAGAA+TGG - chr5_2:28546462-28546481 None:intergenic 35.0%
TTTCATTATTGGATGCAGGT+TGG + chr5_2:28546587-28546606 Msa0766630:intron 35.0%
TCAGTGGTATTTATGCAGAA+TGG + chr5_2:28546632-28546651 Msa0766630:CDS 35.0%
TGGTATTTATGCAGAATGGA+GGG + chr5_2:28546636-28546655 Msa0766630:CDS 35.0%
TCAGTGGTATTTATGCAGAA+TGG + chr5_2:28546632-28546651 Msa0766630:CDS 35.0%
TGGTATTTATGCAGAATGGA+GGG + chr5_2:28546636-28546655 Msa0766630:CDS 35.0%
GAAACTGTGTTCAAGATGTT+TGG + chr5_2:28546762-28546781 Msa0766630:intron 35.0%
AACTGTGTTCAAGATGTTTG+GGG + chr5_2:28546764-28546783 Msa0766630:intron 35.0%
! AAGTCTTTGTCCTGTTTTGT+TGG + chr5_2:28546874-28546893 Msa0766630:intron 35.0%
GTTTGGTAAACCAACAAAAC+AGG - chr5_2:28546887-28546906 None:intergenic 35.0%
!! TGTTGGTTTACCAAACTAAC+TGG + chr5_2:28546891-28546910 Msa0766630:intron 35.0%
ATCATCAAAGCCAGTTAGTT+TGG - chr5_2:28546904-28546923 None:intergenic 35.0%
TGAAGGTGACTACTGAAAAT+GGG + chr5_2:28546968-28546987 Msa0766630:CDS 35.0%
! AATGGGAAAACATTTGTTGC+TGG + chr5_2:28546985-28547004 Msa0766630:CDS 35.0%
!! TCTTGGGGTACTGAAATTAA+CGG + chr5_2:28547029-28547048 Msa0766630:intron 35.0%
CTCAACTGCAGAATTTAGTT+TGG - chr5_2:28547076-28547095 None:intergenic 35.0%
! TTGAAGCACTTGATTGAAAG+TGG + chr5_2:28547558-28547577 Msa0766630:CDS 35.0%
! GTTGTACTGAAGGATGTTTT+AGG + chr5_2:28547615-28547634 Msa0766630:intron 35.0%
!! TGTACTGAAGGATGTTTTAG+GGG + chr5_2:28547617-28547636 Msa0766630:intron 35.0%
! CGCGTGTTAGATTTTACTTT+CGG + chr5_2:28547653-28547672 Msa0766630:intron 35.0%
! GCGTGTTAGATTTTACTTTC+GGG + chr5_2:28547654-28547673 Msa0766630:intron 35.0%
!! TGTTGTTTCGTAAATTGGCG+GGG + chr5_2:28544595-28544614 Msa0766630:intron 40.0%
!! TGTTGCTTTGGAATGTTTGG+CGG + chr5_2:28544690-28544709 Msa0766630:intron 40.0%
ACTACACCTTCAAGTGAAGT+TGG - chr5_2:28544946-28544965 None:intergenic 40.0%
GACAAATTCCCATTTCCACA+TGG + chr5_2:28545573-28545592 Msa0766630:intron 40.0%
CATATGTCACCATGTGGAAA+TGG - chr5_2:28545585-28545604 None:intergenic 40.0%
!!! TTTGGTTTTCCTGTTGACCT+AGG + chr5_2:28545815-28545834 Msa0766630:CDS 40.0%
ATCTTTACCATGATGCACCT+AGG - chr5_2:28545835-28545854 None:intergenic 40.0%
AGTTTGCAATGAGAATCCTC+TGG + chr5_2:28545958-28545977 Msa0766630:CDS 40.0%
GAATGCTTCAATCTTTCCTC+TGG + chr5_2:28546142-28546161 Msa0766630:intron 40.0%
TTTCCTCTGGTCATCTTGAA+TGG + chr5_2:28546155-28546174 Msa0766630:intron 40.0%
ATACCATTCAAGATGACCAG+AGG - chr5_2:28546161-28546180 None:intergenic 40.0%
! CAGCTATGTGCTTTTCGATA+TGG + chr5_2:28546226-28546245 Msa0766630:intron 40.0%
! CTATGTGCTTTTCGATATGG+AGG + chr5_2:28546229-28546248 Msa0766630:CDS 40.0%
! ATGTGCTTTTCGATATGGAG+GGG + chr5_2:28546231-28546250 Msa0766630:CDS 40.0%
GAATCAAGTTCCACAAGAGT+TGG + chr5_2:28546253-28546272 Msa0766630:CDS 40.0%
TTGAAAGAAAGCCAGAACTG+AGG + chr5_2:28546486-28546505 Msa0766630:CDS 40.0%
GCTAATAATGACCTCAGTTC+TGG - chr5_2:28546500-28546519 None:intergenic 40.0%
! ATTATTGGATGCAGGTTGGA+GGG + chr5_2:28546591-28546610 Msa0766630:intron 40.0%
! TTTCACATAAGGTGCTTCAG+TGG + chr5_2:28546616-28546635 Msa0766630:CDS 40.0%
GTGGTATTTATGCAGAATGG+AGG + chr5_2:28546635-28546654 Msa0766630:CDS 40.0%
! TTTCACATAAGGTGCTTCAG+TGG + chr5_2:28546616-28546635 Msa0766630:CDS 40.0%
GTGGTATTTATGCAGAATGG+AGG + chr5_2:28546635-28546654 Msa0766630:CDS 40.0%
AAATGTTGGGACCAGGTAAT+TGG + chr5_2:28546737-28546756 Msa0766630:intron 40.0%
CACAGTTTCTTCCAATTACC+TGG - chr5_2:28546751-28546770 None:intergenic 40.0%
ATCTTTGTCGCCCTGAAAAT+AGG - chr5_2:28546928-28546947 None:intergenic 40.0%
! TAGGGGATATAATGGAGTGA+AGG + chr5_2:28546951-28546970 Msa0766630:CDS 40.0%
GTGAAGGTGACTACTGAAAA+TGG + chr5_2:28546967-28546986 Msa0766630:CDS 40.0%
CTATCATTGCTGTACCTCTT+GGG + chr5_2:28547013-28547032 Msa0766630:intron 40.0%
TATCATTGCTGTACCTCTTG+GGG + chr5_2:28547014-28547033 Msa0766630:intron 40.0%
GTTAATTTCAGTACCCCAAG+AGG - chr5_2:28547030-28547049 None:intergenic 40.0%
ACACAAGCTTTGCAAAATGC+CGG - chr5_2:28547437-28547456 None:intergenic 40.0%
! GCAGCCTTTTCATAAACCAA+GGG - chr5_2:28547510-28547529 None:intergenic 40.0%
! AGCAGCCTTTTCATAAACCA+AGG - chr5_2:28547511-28547530 None:intergenic 40.0%
! TGGTGATGAAGTTGTACTGA+AGG + chr5_2:28547605-28547624 Msa0766630:CDS 40.0%
!! GTACTGAAGGATGTTTTAGG+GGG + chr5_2:28547618-28547637 Msa0766630:intron 40.0%
TCTTCGTTGTAGCAGAGTTC+TGG + chr5_2:28544547-28544566 Msa0766630:CDS 45.0%
TTTCGTAAATTGGCGGGGTT+TGG + chr5_2:28544600-28544619 Msa0766630:intron 45.0%
! AATTGGCGGGGTTTGGAATT+TGG + chr5_2:28544607-28544626 Msa0766630:intron 45.0%
! ATTGGCGGGGTTTGGAATTT+GGG + chr5_2:28544608-28544627 Msa0766630:intron 45.0%
! TCAGCCTGCGATTCAGTTTT+CGG + chr5_2:28544641-28544660 Msa0766630:intron 45.0%
!! GTTGCTTTGGAATGTTTGGC+GGG + chr5_2:28544691-28544710 Msa0766630:intron 45.0%
GGTACAAGTAATGGTTGCCT+TGG - chr5_2:28544880-28544899 None:intergenic 45.0%
GTTCCTCCAACTTCACTTGA+AGG + chr5_2:28544937-28544956 Msa0766630:intron 45.0%
ACACCTTCAAGTGAAGTTGG+AGG - chr5_2:28544943-28544962 None:intergenic 45.0%
TTTGCCTTGAACCCTGATTG+AGG - chr5_2:28545038-28545057 None:intergenic 45.0%
TCAATCAGGGTTCAAGGCAA+AGG + chr5_2:28545037-28545056 Msa0766630:intron 45.0%
GAAATGGGAATTTGTCCCGA+AGG - chr5_2:28545569-28545588 None:intergenic 45.0%
GAATTCCAGGATAGACTTGG+TGG + chr5_2:28545770-28545789 Msa0766630:CDS 45.0%
! AATCCTCTGGCTCCATTGAT+TGG + chr5_2:28545971-28545990 Msa0766630:CDS 45.0%
! ATCCTCTGGCTCCATTGATT+GGG + chr5_2:28545972-28545991 Msa0766630:CDS 45.0%
CAGAGTTATCCTCACACGTA+CGG - chr5_2:28546018-28546037 None:intergenic 45.0%
GCAGACAGATAATGTACGAC+AGG + chr5_2:28546418-28546437 Msa0766630:intron 45.0%
! CATTATTGGATGCAGGTTGG+AGG + chr5_2:28546590-28546609 Msa0766630:intron 45.0%
! TTATTGGATGCAGGTTGGAG+GGG + chr5_2:28546592-28546611 Msa0766630:intron 45.0%
GAATGGAGGGCTTTCACATA+AGG + chr5_2:28546649-28546668 Msa0766630:CDS 45.0%
ATTTATGCAGAATGGAGGGC+TGG + chr5_2:28546640-28546659 Msa0766630:CDS 45.0%
ATCACTGAAATGTTGGGACC+AGG + chr5_2:28546730-28546749 Msa0766630:intron 45.0%
TCAGGGCGACAAAGATAACT+AGG + chr5_2:28546932-28546951 Msa0766630:intron 45.0%
CAGGGCGACAAAGATAACTA+GGG + chr5_2:28546933-28546952 Msa0766630:intron 45.0%
AGGGCGACAAAGATAACTAG+GGG + chr5_2:28546934-28546953 Msa0766630:intron 45.0%
GCTATCATTGCTGTACCTCT+TGG + chr5_2:28547012-28547031 Msa0766630:intron 45.0%
CACAAGCTTTGCAAAATGCC+GGG - chr5_2:28547436-28547455 None:intergenic 45.0%
! ACATCTAGCATGCTACTTGC+AGG + chr5_2:28547458-28547477 Msa0766630:intron 45.0%
! GCCTTTTCATAAACCAAGGG+CGG - chr5_2:28547507-28547526 None:intergenic 45.0%
GCTGCTAATGCAGTGTACAT+CGG + chr5_2:28547525-28547544 Msa0766630:CDS 45.0%
!!! ATTGATTAATTTAATTTTTA+TGG + chr5_2:28547158-28547177 Msa0766630:intron 5.0%
GACTCCGAAAACTGAATCGC+AGG - chr5_2:28544648-28544667 None:intergenic 50.0%
! CGGGTCTGTCTGTTCAGTTT+TGG + chr5_2:28544710-28544729 Msa0766630:intron 50.0%
!! AGTGTGGGTATTGGACACCA+AGG + chr5_2:28544860-28544879 Msa0766630:intron 50.0%
TGAACCCTGATTGAGGTGGA+TGG - chr5_2:28545031-28545050 None:intergenic 50.0%
TCCACCTCAATCAGGGTTCA+AGG + chr5_2:28545031-28545050 Msa0766630:intron 50.0%
GTCAAGCCAAACCACACCTT+CGG + chr5_2:28545550-28545569 Msa0766630:intron 50.0%
TCAAGCCAAACCACACCTTC+GGG + chr5_2:28545551-28545570 Msa0766630:intron 50.0%
! TTTGTCCCGAAGGTGTGGTT+TGG - chr5_2:28545559-28545578 None:intergenic 50.0%
TTCTGCCACCAAGTCTATCC+TGG - chr5_2:28545778-28545797 None:intergenic 50.0%
CATGATGCACCTAGGTCAAC+AGG - chr5_2:28545827-28545846 None:intergenic 50.0%
CTGTTGACCTAGGTGCATCA+TGG + chr5_2:28545825-28545844 Msa0766630:CDS 50.0%
! GCTCCATTGATTGGGAGGTT+GGG + chr5_2:28545980-28545999 Msa0766630:CDS 50.0%
AGTCCCAACCTCCCAATCAA+TGG - chr5_2:28545986-28546005 None:intergenic 50.0%
ACCTCTTTACCGTACGTGTG+AGG + chr5_2:28546006-28546025 Msa0766630:CDS 50.0%
TCCTCACACGTACGGTAAAG+AGG - chr5_2:28546010-28546029 None:intergenic 50.0%
GTTGGAGGGGCTTTCACATA+AGG + chr5_2:28546605-28546624 Msa0766630:CDS 50.0%
CAGGAGTCCATGTCTACTAC+TGG + chr5_2:28547477-28547496 Msa0766630:intron 50.0%
GCCGCCCTTGGTTTATGAAA+AGG + chr5_2:28547503-28547522 Msa0766630:CDS 50.0%
! GTTGTAGCAGAGTTCTGGCG+TGG + chr5_2:28544552-28544571 Msa0766630:CDS 55.0%
GTTCTGGCGTGGCAAATTGC+AGG + chr5_2:28544563-28544582 Msa0766630:CDS 55.0%
TGGAGCCATCCACCTCAATC+AGG + chr5_2:28545023-28545042 Msa0766630:intron 55.0%
GGAGCCATCCACCTCAATCA+GGG + chr5_2:28545024-28545043 Msa0766630:intron 55.0%
GCCTTGAACCCTGATTGAGG+TGG - chr5_2:28545035-28545054 None:intergenic 55.0%
! GTGTCTACGAGTTTGGCTCG+TGG + chr5_2:28545211-28545230 Msa0766630:intron 55.0%
GGGAATTTGTCCCGAAGGTG+TGG - chr5_2:28545564-28545583 None:intergenic 55.0%
CTCCCAATCAATGGAGCCAG+AGG - chr5_2:28545977-28545996 None:intergenic 55.0%
! CTCTGGCTCCATTGATTGGG+AGG + chr5_2:28545975-28545994 Msa0766630:CDS 55.0%
! GGCTCCATTGATTGGGAGGT+TGG + chr5_2:28545979-28545998 Msa0766630:CDS 55.0%
CGGCACACCAGTAGTAGACA+TGG - chr5_2:28547487-28547506 None:intergenic 55.0%
TACTACTGGTGTGCCGCCCT+TGG + chr5_2:28547491-28547510 Msa0766630:CDS 60.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 28544534 28547787 28544534 ID=Msa0766630;Name=Msa0766630
chr5_2 mRNA 28544534 28547787 28544534 ID=Msa0766630-mRNA-1;Parent=Msa0766630;Name=Msa0766630-mRNA-1;_AED=0.50;_eAED=0.49;_QI=0|0|0|0.22|0.87|0.77|9|0|252
chr5_2 exon 28544534 28544584 28544534 ID=Msa0766630-mRNA-1:exon:10988;Parent=Msa0766630-mRNA-1
chr5_2 exon 28545758 28545846 28545758 ID=Msa0766630-mRNA-1:exon:10989;Parent=Msa0766630-mRNA-1
chr5_2 exon 28545949 28546062 28545949 ID=Msa0766630-mRNA-1:exon:10990;Parent=Msa0766630-mRNA-1
chr5_2 exon 28546229 28546274 28546229 ID=Msa0766630-mRNA-1:exon:10991;Parent=Msa0766630-mRNA-1
chr5_2 exon 28546422 28546507 28546422 ID=Msa0766630-mRNA-1:exon:10992;Parent=Msa0766630-mRNA-1
chr5_2 exon 28546605 28546670 28546605 ID=Msa0766630-mRNA-1:exon:10993;Parent=Msa0766630-mRNA-1
chr5_2 exon 28546936 28547023 28546936 ID=Msa0766630-mRNA-1:exon:10994;Parent=Msa0766630-mRNA-1
chr5_2 exon 28547480 28547629 28547480 ID=Msa0766630-mRNA-1:exon:10995;Parent=Msa0766630-mRNA-1
chr5_2 exon 28547719 28547787 28547719 ID=Msa0766630-mRNA-1:exon:10996;Parent=Msa0766630-mRNA-1
chr5_2 CDS 28544534 28544584 28544534 ID=Msa0766630-mRNA-1:cds;Parent=Msa0766630-mRNA-1
chr5_2 CDS 28545758 28545846 28545758 ID=Msa0766630-mRNA-1:cds;Parent=Msa0766630-mRNA-1
chr5_2 CDS 28545949 28546062 28545949 ID=Msa0766630-mRNA-1:cds;Parent=Msa0766630-mRNA-1
chr5_2 CDS 28546229 28546274 28546229 ID=Msa0766630-mRNA-1:cds;Parent=Msa0766630-mRNA-1
chr5_2 CDS 28546422 28546507 28546422 ID=Msa0766630-mRNA-1:cds;Parent=Msa0766630-mRNA-1
chr5_2 CDS 28546605 28546670 28546605 ID=Msa0766630-mRNA-1:cds;Parent=Msa0766630-mRNA-1
chr5_2 CDS 28546936 28547023 28546936 ID=Msa0766630-mRNA-1:cds;Parent=Msa0766630-mRNA-1
chr5_2 CDS 28547480 28547629 28547480 ID=Msa0766630-mRNA-1:cds;Parent=Msa0766630-mRNA-1
chr5_2 CDS 28547719 28547787 28547719 ID=Msa0766630-mRNA-1:cds;Parent=Msa0766630-mRNA-1
Gene Sequence

>Msa0766630

ATGGCAAGGCACATCTTCGTTGTAGCAGAGTTCTGGCGTGGCAAATTGCAGGTCATTCTTTTAGAATTCCAGGATAGACTTGGTGGCAGAATTCACACTGATTACTCATTTGGTTTTCCTGTTGACCTAGGTGCATCATGGTTGCATGGAGTTTGCAATGAGAATCCTCTGGCTCCATTGATTGGGAGGTTGGGACTACCTCTTTACCGTACGTGTGAGGATAACTCTGTCCTATACGATCATGATTTGGAAAGCTATGTGCTTTTCGATATGGAGGGGAATCAAGTTCCACAAGAGTTGACAGATAATGTACGACAGGAATTCAGCGAAGACATGTCCATTCTTCGTGCACTTTCAATTGTTTTTGAAAGAAAGCCAGAACTGAGGTTGGAGGGGCTTTCACATAAGGTGCTTCAGTGGTATTTATGCAGAATGGAGGGCTTTCACATAAGGGCGACAAAGATAACTAGGGGATATAATGGAGTGAAGGTGACTACTGAAAATGGGAAAACATTTGTTGCTGGCGCTGCTATCATTGCTGAGTCCATGTCTACTACTGGTGTGCCGCCCTTGGTTTATGAAAAGGCTGCTAATGCAGTGTACATCGGTTCTGTGTTTTTGAAGCACTTGATTGAAAGTGGTATGCAATTGTATCTATCTTTCAATGGTGATGAAGTTGTACTGAAGGATAACTATCTTATCAAGTATTTATTGGGATCTCAGTATAAGAAAGTTAAGGAACTCTATTATAGTATTTAG

Protein sequence

>Msa0766630

MARHIFVVAEFWRGKLQVILLEFQDRLGGRIHTDYSFGFPVDLGASWLHGVCNENPLAPLIGRLGLPLYRTCEDNSVLYDHDLESYVLFDMEGNQVPQELTDNVRQEFSEDMSILRALSIVFERKPELRLEGLSHKVLQWYLCRMEGFHIRATKITRGYNGVKVTTENGKTFVAGAAIIAESMSTTGVPPLVYEKAANAVYIGSVFLKHLIESGMQLYLSFNGDEVVLKDNYLIKYLLGSQYKKVKELYYSI*