Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0709490 | XP_003625844.1 | 95.248 | 484 | 14 | 4 | 1 | 482 | 1 | 477 | 0.0 | 944 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0709490 | sp|Q9FMR1|RGAP1_ARATH | 57.692 | 416 | 138 | 7 | 69 | 482 | 87 | 466 | 1.52e-153 | 448 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0709490 | Q2HTG0 | 95.248 | 484 | 14 | 4 | 1 | 482 | 1 | 477 | 0.0 | 944 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0709490 | Msa1125940 | 0.826019 | 3.413600e-54 | -8.615850e-47 |
| Msa0709490 | Msa1171350 | 0.997526 | 3.910208e-244 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0709490 | MtrunA17_Chr7g0266501 | 95.248 | 484 | 14 | 4 | 1 | 482 | 1 | 477 | 0.0 | 944 |
| Msa0709490 | MtrunA17_Chr2g0321541 | 55.607 | 428 | 156 | 7 | 69 | 482 | 44 | 451 | 7.13e-151 | 437 |
| Msa0709490 | MtrunA17_Chr4g0026251 | 67.559 | 299 | 89 | 1 | 62 | 360 | 60 | 350 | 7.18e-147 | 424 |
| Msa0709490 | MtrunA17_Chr8g0346171 | 69.288 | 267 | 77 | 1 | 67 | 333 | 79 | 340 | 3.64e-137 | 404 |
| Msa0709490 | MtrunA17_Chr1g0196181 | 66.434 | 286 | 94 | 2 | 62 | 345 | 26 | 311 | 2.10e-128 | 381 |
| Msa0709490 | MtrunA17_Chr7g0268531 | 65.299 | 268 | 92 | 1 | 68 | 334 | 25 | 292 | 2.09e-119 | 357 |
| Msa0709490 | MtrunA17_Chr5g0426461 | 70.701 | 157 | 42 | 1 | 141 | 297 | 16 | 168 | 1.03e-73 | 230 |
| Msa0709490 | MtrunA17_Chr7g0250591 | 66.460 | 161 | 52 | 1 | 141 | 301 | 14 | 172 | 3.27e-70 | 223 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0709490 | AT5G22400.1 | 57.692 | 416 | 138 | 7 | 69 | 482 | 87 | 466 | 1.55e-154 | 448 |
| Msa0709490 | AT3G11490.1 | 54.654 | 419 | 135 | 6 | 71 | 482 | 65 | 435 | 1.56e-148 | 431 |
| Msa0709490 | AT2G46710.1 | 68.030 | 269 | 83 | 2 | 69 | 336 | 71 | 337 | 7.96e-130 | 384 |
| Msa0709490 | AT1G08340.1 | 73.160 | 231 | 62 | 0 | 102 | 332 | 1 | 231 | 4.00e-129 | 378 |
| Msa0709490 | AT4G03100.1 | 64.706 | 289 | 90 | 3 | 70 | 347 | 39 | 326 | 3.36e-128 | 379 |
Find 134 sgRNAs with CRISPR-Local
Find 355 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTATAGAATTTGATGAATT+TGG | 0.118697 | 5_1:-647601 | Msa0709490:three_prime_UTR |
| CGTCGTCATCAAAAGAATTT+AGG | 0.199052 | 5_1:+648368 | None:intergenic |
| AACAGGGGAATTGCTCTTAT+TGG | 0.209429 | 5_1:-648007 | Msa0709490:CDS |
| TCTTCTTCTTCAATGGAAAT+TGG | 0.209719 | 5_1:-652702 | Msa0709490:CDS |
| CTGTGTGCGTTGCCACATTT+TGG | 0.220789 | 5_1:-647748 | Msa0709490:three_prime_UTR |
| TTGATTCAAGAAATGGATTA+TGG | 0.245562 | 5_1:+653037 | None:intergenic |
| AGCACATTCTTCTTCTGTTT+GGG | 0.248997 | 5_1:+649587 | None:intergenic |
| CAAATTTGCTCTATGGCATT+TGG | 0.251916 | 5_1:-648109 | Msa0709490:CDS |
| GGTAGATGTTTGCAGACTTT+TGG | 0.259340 | 5_1:+648195 | None:intergenic |
| TCGCTGTTGTTGTTGTTAAA+AGG | 0.271341 | 5_1:+652894 | None:intergenic |
| AAATTTGCTCTATGGCATTT+GGG | 0.279790 | 5_1:-648108 | Msa0709490:CDS |
| ACGTTTAGGAAATCTTTAAT+TGG | 0.295130 | 5_1:-652759 | Msa0709490:CDS |
| GGAGGTCTTCTTGGAACTTC+AGG | 0.302039 | 5_1:+652597 | None:intergenic |
| GAGCACATTCTTCTTCTGTT+TGG | 0.302295 | 5_1:+649586 | None:intergenic |
| ATTCTTGTTGTTGTTGAATC+TGG | 0.303898 | 5_1:+652847 | None:intergenic |
| CATCCATTCCATTCCCTTCT+CGG | 0.309777 | 5_1:+647795 | None:intergenic |
| GATAGAAGAGGTGGTTGGTT+AGG | 0.324403 | 5_1:+653215 | None:intergenic |
| GTGAAGTTTGATTCAAGAAA+TGG | 0.325343 | 5_1:+653030 | None:intergenic |
| AGAACTTCCAACTGGGATAT+TGG | 0.336988 | 5_1:-649640 | Msa0709490:CDS |
| GTTGTTGTTGAATCTGGTAA+TGG | 0.342290 | 5_1:+652853 | None:intergenic |
| CAGAAGCCGCCCTCCTAGAT+TGG | 0.355136 | 5_1:-649539 | Msa0709490:CDS |
| AGCGAGAGAGAATCTGATTC+CGG | 0.356580 | 5_1:-653136 | Msa0709490:five_prime_UTR |
| CTGGCACTAGGAGGTCTTCT+TGG | 0.357672 | 5_1:+652588 | None:intergenic |
| TAAAAGGTGAAGAATTAGTT+TGG | 0.365796 | 5_1:+652910 | None:intergenic |
| TGTCTCTCAAATTTGCTCTA+TGG | 0.378617 | 5_1:-648116 | Msa0709490:CDS |
| TTCTAGTGGAAATAGGTTGC+TGG | 0.378635 | 5_1:-648161 | Msa0709490:CDS |
| TCTGAGCAACGTCTGCCATT+AGG | 0.381990 | 5_1:+649508 | None:intergenic |
| CAGGATCGGTGGAGAAGAAC+AGG | 0.382654 | 5_1:-648024 | Msa0709490:CDS |
| ATAGAAGAGGTGGTTGGTTA+GGG | 0.382686 | 5_1:+653216 | None:intergenic |
| GAAGTCATGTTTATCCTTGT+AGG | 0.394985 | 5_1:-647505 | Msa0709490:three_prime_UTR |
| TTCAAGGATGAAAGTGAATA+CGG | 0.404020 | 5_1:-648319 | Msa0709490:CDS |
| TGCATTAACAGCAGTATTGT+AGG | 0.406301 | 5_1:+650402 | None:intergenic |
| TGGTTCAGAGAACTTCCAAC+TGG | 0.411594 | 5_1:-649648 | Msa0709490:CDS |
| GCAACATGTCTAACATTAGA+AGG | 0.416824 | 5_1:+652675 | None:intergenic |
| TTGCTTGGCAGGTCTTATAA+AGG | 0.417838 | 5_1:-650147 | Msa0709490:intron |
| CGTTATGTGAATGTGACTTC+GGG | 0.417898 | 5_1:+653096 | None:intergenic |
| TTAGGTTTACTGCCCAATCT+AGG | 0.421349 | 5_1:+649526 | None:intergenic |
| TTCATCAAATTCTATAATAC+AGG | 0.427264 | 5_1:+647606 | None:intergenic |
| CTTCTTCAATGGAAATTGGT+TGG | 0.430621 | 5_1:-652698 | Msa0709490:CDS |
| TTGTTGTTGAATCTGGTAAT+GGG | 0.435508 | 5_1:+652854 | None:intergenic |
| AGGAGGGCGGCTTCTGTTGA+AGG | 0.441531 | 5_1:+649546 | None:intergenic |
| AGAGAATCTGATTCCGGGTC+GGG | 0.443335 | 5_1:-653130 | Msa0709490:five_prime_UTR |
| GCGAGAGAGAATCTGATTCC+GGG | 0.443896 | 5_1:-653135 | Msa0709490:five_prime_UTR |
| CTTCTGTCATGATGAATTGA+TGG | 0.445304 | 5_1:+653006 | None:intergenic |
| ACTTCAGGTTCAAATTCAAC+AGG | 0.454247 | 5_1:+652612 | None:intergenic |
| TGGCTTACGTGAGTCATGTT+TGG | 0.459951 | 5_1:+649435 | None:intergenic |
| CGAGAAGGGAATGGAATGGA+TGG | 0.460271 | 5_1:-647794 | Msa0709490:three_prime_UTR |
| ATTGACGTGCATTGCTTGGC+AGG | 0.464704 | 5_1:-650158 | Msa0709490:CDS |
| ATCACCTGCTCTGGCGAAAG+AGG | 0.480516 | 5_1:+649615 | None:intergenic |
| GGACCCTCTTTCGCCAGAGC+AGG | 0.483438 | 5_1:-649619 | Msa0709490:CDS |
| TGGGACTGCATCACCTGCTC+TGG | 0.485836 | 5_1:+649606 | None:intergenic |
| TGTAGGTACACTATTTCCTC+TGG | 0.485938 | 5_1:+650419 | None:intergenic |
| CAATGTATTATTGTAAGTAG+TGG | 0.486099 | 5_1:-647549 | Msa0709490:three_prime_UTR |
| AAGTCATGTTTATCCTTGTA+GGG | 0.486254 | 5_1:-647504 | Msa0709490:three_prime_UTR |
| AGAAGCCGCCCTCCTAGATT+GGG | 0.488090 | 5_1:-649538 | Msa0709490:CDS |
| ACGTTATGTGAATGTGACTT+CGG | 0.504063 | 5_1:+653095 | None:intergenic |
| TGCATAACGTCCTTCCGAGA+AGG | 0.507199 | 5_1:-647809 | Msa0709490:three_prime_UTR |
| AAAGAATTTAGGTTTGAAGA+GGG | 0.509307 | 5_1:+648379 | None:intergenic |
| GGACTTGAAGAACAGCTTGA+AGG | 0.509334 | 5_1:+652966 | None:intergenic |
| CGTTATGCAACGACTCCACT+AGG | 0.511417 | 5_1:+647823 | None:intergenic |
| TAATCTACTAAGCTTCATCT+TGG | 0.511677 | 5_1:-653246 | None:intergenic |
| AGGGCTTTGTTGTGAAGGCT+CGG | 0.512525 | 5_1:+648258 | None:intergenic |
| GATACAGACAAGTGTTCAGC+AGG | 0.515554 | 5_1:-648043 | Msa0709490:CDS |
| GCATAACGTCCTTCCGAGAA+GGG | 0.518743 | 5_1:-647808 | Msa0709490:three_prime_UTR |
| GTATGCACAAGGAGGCCTGC+AGG | 0.521762 | 5_1:-650370 | Msa0709490:intron |
| AATGGCAGACGTTGCTCAGA+TGG | 0.521999 | 5_1:-649505 | Msa0709490:CDS |
| CAAGAAGACCTCCTAGTGCC+AGG | 0.530845 | 5_1:-652587 | Msa0709490:intron |
| AATAAATTCAAGATCCGAGT+TGG | 0.537228 | 5_1:-647981 | Msa0709490:CDS |
| AATTTGCTCTATGGCATTTG+GGG | 0.539936 | 5_1:-648107 | Msa0709490:CDS |
| TTAATTGGTTGTACCAACAC+TGG | 0.540139 | 5_1:-652744 | Msa0709490:CDS |
| GATCCGAGTTGGCTGAAGCT+TGG | 0.541926 | 5_1:-647970 | Msa0709490:CDS |
| AGATTGGGCAGTAAACCTAA+TGG | 0.543925 | 5_1:-649523 | Msa0709490:CDS |
| AGAAAGCCCAACCTGGCACT+AGG | 0.544520 | 5_1:+652576 | None:intergenic |
| AAAAGAATTTAGGTTTGAAG+AGG | 0.545936 | 5_1:+648378 | None:intergenic |
| AAGGTGAAGAATTAGTTTGG+TGG | 0.548388 | 5_1:+652913 | None:intergenic |
| GACAACACTGCTGCCCTACA+AGG | 0.550124 | 5_1:+647491 | None:intergenic |
| ACGTCCTTCCGAGAAGGGAA+TGG | 0.551542 | 5_1:-647803 | Msa0709490:three_prime_UTR |
| TTCAAGAAATGGATTATGGA+AGG | 0.553058 | 5_1:+653041 | None:intergenic |
| AAGAATGTGCTCAGCTTGTG+AGG | 0.557425 | 5_1:-649575 | Msa0709490:CDS |
| AGACAAGTGTTCAGCAGGAT+CGG | 0.558238 | 5_1:-648038 | Msa0709490:CDS |
| TATCAGAAGCATTCAACTGA+AGG | 0.560255 | 5_1:+648062 | None:intergenic |
| CAATGCACGTCAATACCATT+CGG | 0.560962 | 5_1:+650167 | None:intergenic |
| CATTCCATTCCCTTCTCGGA+AGG | 0.561208 | 5_1:+647799 | None:intergenic |
| TGATTCCGGGTCGGGTAAAG+CGG | 0.564570 | 5_1:-653122 | Msa0709490:five_prime_UTR |
| ACGCCAAGCTTCAGCCAACT+CGG | 0.566606 | 5_1:+647967 | None:intergenic |
| TACTAGACATTTCCAAAATG+TGG | 0.568805 | 5_1:+647736 | None:intergenic |
| TCACCTGCTCTGGCGAAAGA+GGG | 0.570092 | 5_1:+649616 | None:intergenic |
| GGATGACAAGTTGTGTAAAG+AGG | 0.574791 | 5_1:-647772 | Msa0709490:three_prime_UTR |
| CAATACTGCTGTTAATGCAA+AGG | 0.575265 | 5_1:-650398 | Msa0709490:CDS |
| AGAGGGTCCAATATCCCAGT+TGG | 0.580193 | 5_1:+649633 | None:intergenic |
| TGGTATTGACGTGCATTGCT+TGG | 0.583205 | 5_1:-650162 | Msa0709490:CDS |
| TGTGTAGGGCTTTGTTGTGA+AGG | 0.584574 | 5_1:+648253 | None:intergenic |
| GAGTGTGACACATCATTGAA+TGG | 0.586089 | 5_1:+652945 | None:intergenic |
| AATGCATACACCCAGGCTGA+AGG | 0.587533 | 5_1:-650260 | Msa0709490:intron |
| AATGACACTGAAAGAAAGAG+AGG | 0.594982 | 5_1:-648422 | Msa0709490:CDS |
| ACAATAATACATTGAAACAA+AGG | 0.597287 | 5_1:+647558 | None:intergenic |
| GAACGCACGTAATATTGCAA+TGG | 0.602753 | 5_1:-649466 | Msa0709490:CDS |
| CAAGTGTTCAGCAGGATCGG+TGG | 0.605727 | 5_1:-648035 | Msa0709490:CDS |
| TAATGCTGAAAATAGTCAAG+AGG | 0.607711 | 5_1:-650225 | Msa0709490:CDS |
| GGTTTACTGCCCAATCTAGG+AGG | 0.607842 | 5_1:+649529 | None:intergenic |
| GGTAACCGCTTTACCCGACC+CGG | 0.608066 | 5_1:+653117 | None:intergenic |
| TGGTTAATGAAACAGAATGA+AGG | 0.609165 | 5_1:+647659 | None:intergenic |
| GAGAAGGGAATGGAATGGAT+GGG | 0.610900 | 5_1:-647793 | Msa0709490:three_prime_UTR |
| ATAGTCAAGAGGAGTTTGTG+AGG | 0.610910 | 5_1:-650214 | Msa0709490:CDS |
| CAAAGGCATCTGTATGCACA+AGG | 0.611879 | 5_1:-650381 | Msa0709490:CDS |
| GAAGAACAGCTTGAAGGTGA+AGG | 0.613035 | 5_1:+652972 | None:intergenic |
| TCTCAGAGAGATAGAAGAGG+TGG | 0.613836 | 5_1:+653206 | None:intergenic |
| GCTTGGCGTTGAACATGTAA+AGG | 0.614780 | 5_1:-647953 | Msa0709490:exon |
| ACAAATGTTAGAAGTCTGCA+TGG | 0.616003 | 5_1:+647639 | None:intergenic |
| ATTTGAGAGACAACGCCGCA+AGG | 0.616817 | 5_1:+648127 | None:intergenic |
| AGAGAGATAGAAGAGGTGGT+TGG | 0.617445 | 5_1:+653210 | None:intergenic |
| AGAAAGTTCAGAACCAGTGT+TGG | 0.619289 | 5_1:+652731 | None:intergenic |
| GTTTACTGCCCAATCTAGGA+GGG | 0.621031 | 5_1:+649530 | None:intergenic |
| CTTCCGAGAAGGGAATGGAA+TGG | 0.621269 | 5_1:-647798 | Msa0709490:three_prime_UTR |
| GATTGCTGATGTCGTCCTAG+TGG | 0.623238 | 5_1:-647838 | Msa0709490:three_prime_UTR |
| GAGAGAATCTGATTCCGGGT+CGG | 0.626639 | 5_1:-653131 | Msa0709490:five_prime_UTR |
| GCATACATCAGAGCAGTCAA+AGG | 0.627919 | 5_1:+648481 | None:intergenic |
| TAGTCAAGAGGAGTTTGTGA+GGG | 0.628888 | 5_1:-650213 | Msa0709490:CDS |
| AAGCCCAACCTGGCACTAGG+AGG | 0.631333 | 5_1:+652579 | None:intergenic |
| TACTGCCCAATCTAGGAGGG+CGG | 0.635279 | 5_1:+649533 | None:intergenic |
| AACAGAGGAGTGGTACCGAA+TGG | 0.636514 | 5_1:-650182 | Msa0709490:CDS |
| CTGGTTGACAGTTGTCCTTG+CGG | 0.643744 | 5_1:-648142 | Msa0709490:CDS |
| GGTTCAGAGAACTTCCAACT+GGG | 0.656126 | 5_1:-649647 | Msa0709490:CDS |
| AGGATCGGTGGAGAAGAACA+GGG | 0.661117 | 5_1:-648023 | Msa0709490:CDS |
| ATGAAACAGAATGAAGGACG+TGG | 0.670606 | 5_1:+647665 | None:intergenic |
| ACATCTCAGAGAGATAGAAG+AGG | 0.676440 | 5_1:+653203 | None:intergenic |
| GTGAGGGAACAATTGAACAG+AGG | 0.681529 | 5_1:-650197 | Msa0709490:CDS |
| GATGACTGTGAAACTGAGAG+TGG | 0.687837 | 5_1:-648220 | Msa0709490:CDS |
| TCATTGCTACTAGAGTCTTG+AGG | 0.696604 | 5_1:+648440 | None:intergenic |
| CGGAAATGATTACAGCGACG+AGG | 0.709785 | 5_1:-648299 | Msa0709490:CDS |
| GGAACAATTGAACAGAGGAG+TGG | 0.710977 | 5_1:-650192 | Msa0709490:CDS |
| AGGCATCTGTATGCACAAGG+AGG | 0.718397 | 5_1:-650378 | Msa0709490:CDS |
| GGATCGGTGGAGAAGAACAG+GGG | 0.723286 | 5_1:-648022 | Msa0709490:CDS |
| GCTTTGTTGTGAAGGCTCGG+CGG | 0.725223 | 5_1:+648261 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAAAAAAAAAACATAAATT+GGG | + | chr5_1:648272-648291 | None:intergenic | 10.0% |
| !! | ACAAAAAAAAAAACATAAAT+TGG | + | chr5_1:648273-648292 | None:intergenic | 10.0% |
| !!! | TTTTGTTTTATTTGAAATTT+GGG | - | chr5_1:649641-649660 | Msa0709490:CDS | 10.0% |
| !!! | TTTTGTTTTATTTGAAATTT+GGG | - | chr5_1:649641-649660 | Msa0709490:CDS | 10.0% |
| !! | ATGAATATTGATAAATTATT+CGG | - | chr5_1:651970-651989 | Msa0709490:intron | 10.0% |
| !!! | TTTCCAAGAAAATATATTTT+GGG | + | chr5_1:648240-648259 | None:intergenic | 15.0% |
| !!! | ATTTCCAAGAAAATATATTT+TGG | + | chr5_1:648241-648260 | None:intergenic | 15.0% |
| !!! | ACTTTGTTTTATTTGAAATT+TGG | - | chr5_1:648763-648782 | Msa0709490:intron | 15.0% |
| !!! | CTTTGTTTTATTTGAAATTT+GGG | - | chr5_1:648764-648783 | Msa0709490:intron | 15.0% |
| !!! | TTTGTTTTATTTGAAATTTG+GGG | - | chr5_1:648765-648784 | Msa0709490:intron | 15.0% |
| !! | AAAAAATTGAAATCTCAATA+TGG | + | chr5_1:649046-649065 | None:intergenic | 15.0% |
| !!! | ATATTGAGATTTCAATTTTT+TGG | - | chr5_1:649045-649064 | Msa0709490:intron | 15.0% |
| !!! | TATTGAGATTTCAATTTTTT+GGG | - | chr5_1:649046-649065 | Msa0709490:intron | 15.0% |
| !!! | TTTTATAATTTCATAGACAT+TGG | - | chr5_1:649089-649108 | Msa0709490:intron | 15.0% |
| !! | AACATGGAAATAAAATTAAA+AGG | + | chr5_1:649413-649432 | None:intergenic | 15.0% |
| !!! | TTTTAATTTTATTTCCATGT+TGG | - | chr5_1:649412-649431 | Msa0709490:intron | 15.0% |
| !!! | TTTTGTTTTATTCGAAATTT+GGG | - | chr5_1:649447-649466 | Msa0709490:CDS | 15.0% |
| !!! | GTTTTGTTTTATTTGAAATT+TGG | - | chr5_1:649640-649659 | Msa0709490:CDS | 15.0% |
| !!! | TTTGTTTTATTTGAAATTTG+GGG | - | chr5_1:648765-648784 | Msa0709490:intron | 15.0% |
| !!! | GTTTTGTTTTATTTGAAATT+TGG | - | chr5_1:649640-649659 | Msa0709490:CDS | 15.0% |
| !! | TAAATGTTTAGAGATTTATA+TGG | - | chr5_1:650613-650632 | Msa0709490:intron | 15.0% |
| !! | ACATTAGTACATTAAAATTA+GGG | + | chr5_1:650898-650917 | None:intergenic | 15.0% |
| !! | AACATTAGTACATTAAAATT+AGG | + | chr5_1:650899-650918 | None:intergenic | 15.0% |
| !!! | GATTTTAATTTTTGAAATTC+CGG | - | chr5_1:651536-651555 | Msa0709490:intron | 15.0% |
| !! | ATATTATAATTATGCTGAAA+AGG | + | chr5_1:651717-651736 | None:intergenic | 15.0% |
| !! | ATTATAGAATTTGATGAATT+TGG | - | chr5_1:653088-653107 | Msa0709490:five_prime_UTR | 15.0% |
| !!! | TTCCAAGAAAATATATTTTG+GGG | + | chr5_1:648239-648258 | None:intergenic | 20.0% |
| !!! | AAATGCAATTTGTTAAGAAT+CGG | + | chr5_1:648360-648379 | None:intergenic | 20.0% |
| !! | TTTAGTATTTCATAGACATT+AGG | - | chr5_1:648442-648461 | Msa0709490:CDS | 20.0% |
| !!! | GTATATAGATTCGATTTTTT+CGG | - | chr5_1:648550-648569 | Msa0709490:intron | 20.0% |
| !!! | TGAAAATTAGTCTTATTAAG+TGG | - | chr5_1:648648-648667 | Msa0709490:intron | 20.0% |
| !! | CATAATTCTATGAGTATAAA+TGG | + | chr5_1:649254-649273 | None:intergenic | 20.0% |
| !!! | AATAAGACTAATTTGCAAAT+AGG | + | chr5_1:649281-649300 | None:intergenic | 20.0% |
| !!! | TTAGTCTTATTAAGTAGATT+TGG | - | chr5_1:649290-649309 | Msa0709490:intron | 20.0% |
| !!! | GTTTTGTTTTATTCGAAATT+TGG | - | chr5_1:649446-649465 | Msa0709490:CDS | 20.0% |
| !!! | TTTGTTTTATTCGAAATTTG+GGG | - | chr5_1:649448-649467 | Msa0709490:CDS | 20.0% |
| !!! | AATTGTTTTGGATTTATTGT+TGG | - | chr5_1:649480-649499 | Msa0709490:CDS | 20.0% |
| !!! | TATACTACTAATGATTTTAC+TGG | + | chr5_1:649810-649829 | None:intergenic | 20.0% |
| !! | ATTCATCAAACATGTATTAT+AGG | + | chr5_1:650142-650161 | None:intergenic | 20.0% |
| !! | TCAAAACAATGATATAATTC+AGG | + | chr5_1:650169-650188 | None:intergenic | 20.0% |
| !! | TTTGAACTAATAATACATAC+CGG | - | chr5_1:650344-650363 | Msa0709490:intron | 20.0% |
| !! | CATTTAATAGTTCAATTTCA+AGG | + | chr5_1:650413-650432 | None:intergenic | 20.0% |
| !! | AATCTCTAAACATTTAAAAG+AGG | + | chr5_1:650609-650628 | None:intergenic | 20.0% |
| !! | ACCTTCTACTAAATATAAAA+GGG | + | chr5_1:651290-651309 | None:intergenic | 20.0% |
| !! | AACCTTCTACTAAATATAAA+AGG | + | chr5_1:651291-651310 | None:intergenic | 20.0% |
| !!! | TTTCTGATAATTGATTTACA+TGG | - | chr5_1:651434-651453 | Msa0709490:intron | 20.0% |
| !! | CTCAAATAAAATTGAAAAAC+CGG | + | chr5_1:651558-651577 | None:intergenic | 20.0% |
| !! | GTTTAGCAAAATTATAGTAT+TGG | - | chr5_1:652118-652137 | Msa0709490:intron | 20.0% |
| !!! | AAAATTATAGTATTGGATTG+AGG | - | chr5_1:652125-652144 | Msa0709490:intron | 20.0% |
| !!! | TCCACTAGAAATAAAATTTT+CGG | + | chr5_1:652518-652537 | None:intergenic | 20.0% |
| !!! | ATTTTATTTCTAGTGGAAAT+AGG | - | chr5_1:652521-652540 | Msa0709490:intron | 20.0% |
| !!! | ACTTCTAACATTTGTTTTTT+GGG | - | chr5_1:653058-653077 | Msa0709490:five_prime_UTR | 20.0% |
| !! | TTCATCAAATTCTATAATAC+AGG | + | chr5_1:653086-653105 | None:intergenic | 20.0% |
| !! | ACAATAATACATTGAAACAA+AGG | + | chr5_1:653134-653153 | None:intergenic | 20.0% |
| !!! | TTGATTCAAGAAATGGATTA+TGG | + | chr5_1:647655-647674 | None:intergenic | 25.0% |
| ! | TAAAAGGTGAAGAATTAGTT+TGG | + | chr5_1:647782-647801 | None:intergenic | 25.0% |
| ! | ACGTTTAGGAAATCTTTAAT+TGG | - | chr5_1:647930-647949 | Msa0709490:three_prime_UTR | 25.0% |
| ! | AGATTCAGAATAACAAAAAG+GGG | + | chr5_1:648190-648209 | None:intergenic | 25.0% |
| ! | CAGATTCAGAATAACAAAAA+GGG | + | chr5_1:648191-648210 | None:intergenic | 25.0% |
| ! | ACAGATTCAGAATAACAAAA+AGG | + | chr5_1:648192-648211 | None:intergenic | 25.0% |
| !! | TTCCCCAAAATATATTTTCT+TGG | - | chr5_1:648234-648253 | Msa0709490:CDS | 25.0% |
| !!! | AATTTGTTAAGAATCGGATA+TGG | + | chr5_1:648354-648373 | None:intergenic | 25.0% |
| ! | AAGTTGCATAACAAATGTAA+TGG | - | chr5_1:648514-648533 | Msa0709490:intron | 25.0% |
| !!! | ATTCGATTTTTTCGGATAAA+TGG | - | chr5_1:648558-648577 | Msa0709490:intron | 25.0% |
| !! | AGACTAATTTTCAAATACAC+AGG | + | chr5_1:648641-648660 | None:intergenic | 25.0% |
| !!! | TTAGTCTTATTAAGTGGATT+TGG | - | chr5_1:648654-648673 | Msa0709490:intron | 25.0% |
| ! | CAAAATATCAATTACACACT+TGG | - | chr5_1:648909-648928 | Msa0709490:intron | 25.0% |
| !! | ATGCAATTTTTGTTCAGAAT+CGG | + | chr5_1:649007-649026 | None:intergenic | 25.0% |
| !!! | TCAATTTTTTGGGTTAGTAT+AGG | - | chr5_1:649056-649075 | Msa0709490:intron | 25.0% |
| ! | GATGTAATTGATGCTTTATA+AGG | - | chr5_1:649162-649181 | Msa0709490:intron | 25.0% |
| !!! | TTCAGTTTTTTCCAGATAAA+TGG | - | chr5_1:649192-649211 | Msa0709490:intron | 25.0% |
| !!! | TATTAAGTAGATTTGGTTCT+TGG | - | chr5_1:649297-649316 | Msa0709490:intron | 25.0% |
| ! | AAAGATATGAGAAAAATGAG+AGG | - | chr5_1:649329-649348 | Msa0709490:intron | 25.0% |
| ! | ATTTATTGTTGGAAGAGAAT+CGG | - | chr5_1:649491-649510 | Msa0709490:CDS | 25.0% |
| !!! | AATGGTTTTGGGTTTATTAT+TGG | - | chr5_1:649674-649693 | Msa0709490:intron | 25.0% |
| ! | CATAATCAACAAGGAATAAA+AGG | + | chr5_1:649871-649890 | None:intergenic | 25.0% |
| ! | CAAAATATCATTTACACACT+TGG | - | chr5_1:650056-650075 | Msa0709490:intron | 25.0% |
| ! | ATCAAACATGTATTATAGGT+CGG | + | chr5_1:650138-650157 | None:intergenic | 25.0% |
| !!! | TATATCATTGTTTTGACTGT+TGG | - | chr5_1:650173-650192 | Msa0709490:CDS | 25.0% |
| ! | AACATTTAAAAGAGGAAAGA+GGG | + | chr5_1:650601-650620 | None:intergenic | 25.0% |
| ! | AAACATTTAAAAGAGGAAAG+AGG | + | chr5_1:650602-650621 | None:intergenic | 25.0% |
| ! | TTAGAGATTTATATGGAACT+AGG | - | chr5_1:650620-650639 | Msa0709490:intron | 25.0% |
| !!! | TATGCAGTTTTGTAATTTGT+GGG | + | chr5_1:650747-650766 | None:intergenic | 25.0% |
| !!! | TTTTCCTTTTTTAGTTACTG+TGG | - | chr5_1:650924-650943 | Msa0709490:intron | 25.0% |
| !!! | TTTCCTTTTTTAGTTACTGT+GGG | - | chr5_1:650925-650944 | Msa0709490:intron | 25.0% |
| !! | TATAAAAGGGAACATGATTT+TGG | + | chr5_1:651277-651296 | None:intergenic | 25.0% |
| !! | TCCCTTTTATATTTAGTAGA+AGG | - | chr5_1:651286-651305 | Msa0709490:intron | 25.0% |
| ! | AAGTTCAATCGCAAAAAAAA+GGG | + | chr5_1:651326-651345 | None:intergenic | 25.0% |
| ! | TTATATCCTTACTTCTATGT+TGG | - | chr5_1:651365-651384 | Msa0709490:intron | 25.0% |
| ! | CAAAAGTCTATTTAAGGATA+TGG | + | chr5_1:651460-651479 | None:intergenic | 25.0% |
| !! | CATATCCTTAAATAGACTTT+TGG | - | chr5_1:651458-651477 | Msa0709490:intron | 25.0% |
| ! | GTAAAATGCAAAGTAGTTTA+AGG | - | chr5_1:651514-651533 | Msa0709490:intron | 25.0% |
| !! | TATTTGAGACTTTGTTCTTT+AGG | - | chr5_1:651570-651589 | Msa0709490:intron | 25.0% |
| ! | AGGTTAAGATAATCAAACAT+TGG | + | chr5_1:651604-651623 | None:intergenic | 25.0% |
| ! | AGATAACATTATTCTCTACT+AGG | + | chr5_1:651624-651643 | None:intergenic | 25.0% |
| !! | AAAGAATTTAGGTTTGAAGA+GGG | + | chr5_1:652313-652332 | None:intergenic | 25.0% |
| !! | AAAAGAATTTAGGTTTGAAG+AGG | + | chr5_1:652314-652333 | None:intergenic | 25.0% |
| !! | TCATCTTTAAAAAGATGTGT+AGG | + | chr5_1:652454-652473 | None:intergenic | 25.0% |
| !!! | ACCGAAAATTTTATTTCTAG+TGG | - | chr5_1:652514-652533 | Msa0709490:intron | 25.0% |
| !!! | GACTTCTAACATTTGTTTTT+TGG | - | chr5_1:653057-653076 | Msa0709490:five_prime_UTR | 25.0% |
| ! | CAATGTATTATTGTAAGTAG+TGG | - | chr5_1:653140-653159 | Msa0709490:five_prime_UTR | 25.0% |
| !!! | TTCATATCGCTGTTTTTAAA+GGG | + | chr5_1:653227-653246 | None:intergenic | 25.0% |
| !! | TTCAAGAAATGGATTATGGA+AGG | + | chr5_1:647651-647670 | None:intergenic | 30.0% |
| GTGAAGTTTGATTCAAGAAA+TGG | + | chr5_1:647662-647681 | None:intergenic | 30.0% | |
| ! | TTGTTGTTGAATCTGGTAAT+GGG | + | chr5_1:647838-647857 | None:intergenic | 30.0% |
| !! | ATTCTTGTTGTTGTTGAATC+TGG | + | chr5_1:647845-647864 | None:intergenic | 30.0% |
| TTCTTCTTCTTCTTCTTCAA+TGG | - | chr5_1:647980-647999 | Msa0709490:CDS | 30.0% | |
| TCTTCTTCTTCAATGGAAAT+TGG | - | chr5_1:647987-648006 | Msa0709490:CDS | 30.0% | |
| !!! | GTTACTTTTGATCGTTTTCA+TGG | - | chr5_1:648041-648060 | Msa0709490:CDS | 30.0% |
| GAATCTGTGATTCATACAAT+TGG | - | chr5_1:648204-648223 | Msa0709490:CDS | 30.0% | |
| AACAAATCGAAATCTCGATA+TGG | + | chr5_1:648397-648416 | None:intergenic | 30.0% | |
| ! | TGCATAACAAATGTAATGGA+AGG | - | chr5_1:648518-648537 | Msa0709490:intron | 30.0% |
| ATCGAATCTATATACTGTAG+AGG | + | chr5_1:648545-648564 | None:intergenic | 30.0% | |
| AACATGAAATGTCATAAGGA+TGG | + | chr5_1:648592-648611 | None:intergenic | 30.0% | |
| GCATAACATGAAATGTCATA+AGG | + | chr5_1:648596-648615 | None:intergenic | 30.0% | |
| TGTATCTAGGAAAAGATATC+AGG | - | chr5_1:648682-648701 | Msa0709490:intron | 30.0% | |
| AAAGATATCAGGAAAATGAG+AGG | - | chr5_1:648693-648712 | Msa0709490:intron | 30.0% | |
| ACAAAGTGTATTAGCAAAGA+TGG | + | chr5_1:648750-648769 | None:intergenic | 30.0% | |
| ! | AATGGTGTTGGATTTATCAT+TGG | - | chr5_1:648797-648816 | Msa0709490:intron | 30.0% |
| TTGTCAGTTTGTATCAAAGA+AGG | + | chr5_1:648892-648911 | None:intergenic | 30.0% | |
| ! | TTTTTGTTCAGAATCGGATA+TGG | + | chr5_1:649001-649020 | None:intergenic | 30.0% |
| ATATGAGAAAAATGAGAGGA+AGG | - | chr5_1:649333-649352 | Msa0709490:intron | 30.0% | |
| !! | TTTGACTTGATTAGCAAAGA+AGG | + | chr5_1:649386-649405 | None:intergenic | 30.0% |
| ! | TTATTTCCATGTTGGTTAAG+CGG | - | chr5_1:649420-649439 | Msa0709490:intron | 30.0% |
| !!! | GACAATTAGTCTTTTGAAGT+CGG | - | chr5_1:649573-649592 | Msa0709490:CDS | 30.0% |
| TTTACAGCTAGTATCATTGT+TGG | - | chr5_1:649606-649625 | Msa0709490:CDS | 30.0% | |
| ! | GATTATTTCTTGCAACTGAA+AGG | - | chr5_1:649706-649725 | Msa0709490:intron | 30.0% |
| !!! | GACAATTAGTCTTTTGAAGT+CGG | - | chr5_1:649573-649592 | Msa0709490:CDS | 30.0% |
| AACTGACAACATAATCAACA+AGG | + | chr5_1:649880-649899 | None:intergenic | 30.0% | |
| !!! | TATCAGCTCATCTGTTTTTT+TGG | - | chr5_1:650092-650111 | Msa0709490:intron | 30.0% |
| TCAAACATGTATTATAGGTC+GGG | + | chr5_1:650137-650156 | None:intergenic | 30.0% | |
| ! | GACTGTTGGTATATTTTCAA+TGG | - | chr5_1:650187-650206 | Msa0709490:CDS | 30.0% |
| TTATTAGTTCAAATACCTGC+AGG | + | chr5_1:650337-650356 | None:intergenic | 30.0% | |
| TACACAACAGATCATACAAA+AGG | + | chr5_1:650373-650392 | None:intergenic | 30.0% | |
| ATAGTTCAATTTCAAGGTTC+AGG | + | chr5_1:650407-650426 | None:intergenic | 30.0% | |
| TAATGCTGAAAATAGTCAAG+AGG | - | chr5_1:650464-650483 | Msa0709490:CDS | 30.0% | |
| !! | ATGCAGTTTTGTAATTTGTG+GGG | + | chr5_1:650746-650765 | None:intergenic | 30.0% |
| !! | GTATGCAGTTTTGTAATTTG+TGG | + | chr5_1:650748-650767 | None:intergenic | 30.0% |
| !!! | ACATTTTTAGTCCCTAAAGA+GGG | + | chr5_1:650778-650797 | None:intergenic | 30.0% |
| AATTCGTAGAGATTAAATGC+TGG | - | chr5_1:650808-650827 | Msa0709490:intron | 30.0% | |
| !!! | TTCCTTTTTTAGTTACTGTG+GGG | - | chr5_1:650926-650945 | Msa0709490:intron | 30.0% |
| TCTAGGTAGCTATATTGAAA+GGG | - | chr5_1:650975-650994 | Msa0709490:intron | 30.0% | |
| ATATACTTGAGAAACTCTGT+AGG | - | chr5_1:651016-651035 | Msa0709490:intron | 30.0% | |
| AGTTCAATCGCAAAAAAAAG+GGG | + | chr5_1:651325-651344 | None:intergenic | 30.0% | |
| GAAGTTCAATCGCAAAAAAA+AGG | + | chr5_1:651327-651346 | None:intergenic | 30.0% | |
| ! | ACTTCAAAGACATTTTGTTG+TGG | - | chr5_1:651342-651361 | Msa0709490:intron | 30.0% |
| AACTAACCAACATAGAAGTA+AGG | + | chr5_1:651374-651393 | None:intergenic | 30.0% | |
| GATCTCCAAAAGTCTATTTA+AGG | + | chr5_1:651466-651485 | None:intergenic | 30.0% | |
| !!! | TGTTATCTTGTTTTGTCGTT+TGG | - | chr5_1:651636-651655 | Msa0709490:intron | 30.0% |
| !! | CACTGATGACTGTATTTTTA+TGG | + | chr5_1:651673-651692 | None:intergenic | 30.0% |
| !!! | CTAAATTCTTTTGATGACGA+CGG | - | chr5_1:652322-652341 | Msa0709490:intron | 30.0% |
| !!! | TAAATTCTTTTGATGACGAC+GGG | - | chr5_1:652323-652342 | Msa0709490:intron | 30.0% |
| CTTTCATCCTTGAAAAACAA+CGG | + | chr5_1:652364-652383 | None:intergenic | 30.0% | |
| TTCAAGGATGAAAGTGAATA+CGG | - | chr5_1:652370-652389 | Msa0709490:intron | 30.0% | |
| ! | AAATTTGCTCTATGGCATTT+GGG | - | chr5_1:652581-652600 | Msa0709490:intron | 30.0% |
| AATAAATTCAAGATCCGAGT+TGG | - | chr5_1:652708-652727 | Msa0709490:CDS | 30.0% | |
| !!! | TTTTTTCTATCTTGCTGTCT+GGG | - | chr5_1:652765-652784 | Msa0709490:CDS | 30.0% |
| TACTAGACATTTCCAAAATG+TGG | + | chr5_1:652956-652975 | None:intergenic | 30.0% | |
| !! | GTGTTGTTGTGTTATGTTTT+CGG | - | chr5_1:652988-653007 | Msa0709490:CDS | 30.0% |
| ! | TGTTGTTGTGTTATGTTTTC+GGG | - | chr5_1:652989-653008 | Msa0709490:CDS | 30.0% |
| TGGTTAATGAAACAGAATGA+AGG | + | chr5_1:653033-653052 | None:intergenic | 30.0% | |
| AAGTCATGTTTATCCTTGTA+GGG | - | chr5_1:653185-653204 | Msa0709490:five_prime_UTR | 30.0% | |
| !!! | CTTCATATCGCTGTTTTTAA+AGG | + | chr5_1:653228-653247 | None:intergenic | 30.0% |
| TAAAAACAGCGATATGAAGT+TGG | - | chr5_1:653229-653248 | Msa0709490:five_prime_UTR | 30.0% | |
| ACGTTATGTGAATGTGACTT+CGG | + | chr5_1:647597-647616 | None:intergenic | 35.0% | |
| CTTCTGTCATGATGAATTGA+TGG | + | chr5_1:647686-647705 | None:intergenic | 35.0% | |
| ! | AAGGTGAAGAATTAGTTTGG+TGG | + | chr5_1:647779-647798 | None:intergenic | 35.0% |
| ! | TCGCTGTTGTTGTTGTTAAA+AGG | + | chr5_1:647798-647817 | None:intergenic | 35.0% |
| ! | GTTGTTGTTGAATCTGGTAA+TGG | + | chr5_1:647839-647858 | None:intergenic | 35.0% |
| !! | CTCTTTTGATTGCTACGTTT+AGG | - | chr5_1:647916-647935 | Msa0709490:three_prime_UTR | 35.0% |
| TTAATTGGTTGTACCAACAC+TGG | - | chr5_1:647945-647964 | Msa0709490:exon | 35.0% | |
| CTTCTTCAATGGAAATTGGT+TGG | - | chr5_1:647991-648010 | Msa0709490:CDS | 35.0% | |
| GCAACATGTCTAACATTAGA+AGG | + | chr5_1:648017-648036 | None:intergenic | 35.0% | |
| ! | ACTTCAGGTTCAAATTCAAC+AGG | + | chr5_1:648080-648099 | None:intergenic | 35.0% |
| AATTTAAAGAAAGCCCAACC+TGG | + | chr5_1:648123-648142 | None:intergenic | 35.0% | |
| !! | ATCGAGATTTCGATTTGTTG+TGG | - | chr5_1:648398-648417 | Msa0709490:CDS | 35.0% |
| !! | CGATTTGTTGTGGTTAGTAT+AGG | - | chr5_1:648408-648427 | Msa0709490:CDS | 35.0% |
| ! | GGATTTGGTTCATTGTATCT+AGG | - | chr5_1:648669-648688 | Msa0709490:intron | 35.0% |
| ATATCAGGAAAATGAGAGGA+AGG | - | chr5_1:648697-648716 | Msa0709490:intron | 35.0% | |
| AATTTGGGGAACTTCATCAA+TGG | - | chr5_1:648779-648798 | Msa0709490:intron | 35.0% | |
| CTATTAAGCAACTTCAAGCT+TGG | + | chr5_1:649143-649162 | None:intergenic | 35.0% | |
| ATCACAACAAGTCATCAGAA+TGG | + | chr5_1:649226-649245 | None:intergenic | 35.0% | |
| !! | GGTTATTTCTTACAACTGAG+AGG | - | chr5_1:649512-649531 | Msa0709490:CDS | 35.0% |
| TGCATTAACAGCAGTATTGT+AGG | + | chr5_1:650290-650309 | None:intergenic | 35.0% | |
| CAATACTGCTGTTAATGCAA+AGG | - | chr5_1:650291-650310 | Msa0709490:intron | 35.0% | |
| CAGATCATACAAAAGGTTTC+CGG | + | chr5_1:650366-650385 | None:intergenic | 35.0% | |
| ACTATTAAATGCATACACCC+AGG | - | chr5_1:650422-650441 | Msa0709490:CDS | 35.0% | |
| TTATATGGAACTAGGCTCTT+AGG | - | chr5_1:650628-650647 | Msa0709490:intron | 35.0% | |
| ACAACGTTCAAATAGACGAT+AGG | + | chr5_1:650669-650688 | None:intergenic | 35.0% | |
| GGGAATGAAAACTGGATATA+AGG | + | chr5_1:650726-650745 | None:intergenic | 35.0% | |
| AATTTGTGGGGAATGAAAAC+TGG | + | chr5_1:650734-650753 | None:intergenic | 35.0% | |
| ! | ATACTTTTACGCCCTCTTTA+GGG | - | chr5_1:650764-650783 | Msa0709490:intron | 35.0% |
| !!! | CACATTTTTAGTCCCTAAAG+AGG | + | chr5_1:650779-650798 | None:intergenic | 35.0% |
| TTCCCCACAGTAACTAAAAA+AGG | + | chr5_1:650931-650950 | None:intergenic | 35.0% | |
| TTAGTTACTGTGGGGAAATA+TGG | - | chr5_1:650934-650953 | Msa0709490:intron | 35.0% | |
| AATTGCATACGAAGTTGTCT+AGG | - | chr5_1:650958-650977 | Msa0709490:intron | 35.0% | |
| GTCTAGGTAGCTATATTGAA+AGG | - | chr5_1:650974-650993 | Msa0709490:intron | 35.0% | |
| AGCACATTCTTCTTCTGTTT+GGG | + | chr5_1:651105-651124 | None:intergenic | 35.0% | |
| !! | TTGGAGATCTTTTAAAGAGC+AGG | - | chr5_1:651477-651496 | Msa0709490:intron | 35.0% |
| !! | TGGAGATCTTTTAAAGAGCA+GGG | - | chr5_1:651478-651497 | Msa0709490:intron | 35.0% |
| AACAATACACATCCTTTGGA+TGG | - | chr5_1:651840-651859 | Msa0709490:intron | 35.0% | |
| ATATGAACATGCCATTCCAA+AGG | + | chr5_1:651875-651894 | None:intergenic | 35.0% | |
| !! | TCGGATTAGTGCTATGAATT+TGG | - | chr5_1:651989-652008 | Msa0709490:intron | 35.0% |
| ATGAATTTGGCTGCAATTTC+TGG | - | chr5_1:652002-652021 | Msa0709490:intron | 35.0% | |
| TTAGTATCAGTCAAAGATCG+AGG | - | chr5_1:652061-652080 | Msa0709490:intron | 35.0% | |
| AATGACACTGAAAGAAAGAG+AGG | - | chr5_1:652267-652286 | Msa0709490:intron | 35.0% | |
| CGTCGTCATCAAAAGAATTT+AGG | + | chr5_1:652324-652343 | None:intergenic | 35.0% | |
| ! | TGTCTCTCAAATTTGCTCTA+TGG | - | chr5_1:652573-652592 | Msa0709490:intron | 35.0% |
| ! | CAAATTTGCTCTATGGCATT+TGG | - | chr5_1:652580-652599 | Msa0709490:intron | 35.0% |
| ! | AATTTGCTCTATGGCATTTG+GGG | - | chr5_1:652582-652601 | Msa0709490:intron | 35.0% |
| !! | TATCAGAAGCATTCAACTGA+AGG | + | chr5_1:652630-652649 | None:intergenic | 35.0% |
| !!! | GTTTTTTCTATCTTGCTGTC+TGG | - | chr5_1:652764-652783 | Msa0709490:CDS | 35.0% |
| !! | TTTTTCTATCTTGCTGTCTG+GGG | - | chr5_1:652766-652785 | Msa0709490:CDS | 35.0% |
| ACAAATGTTAGAAGTCTGCA+TGG | + | chr5_1:653053-653072 | None:intergenic | 35.0% | |
| GAAGTCATGTTTATCCTTGT+AGG | - | chr5_1:653184-653203 | Msa0709490:five_prime_UTR | 35.0% | |
| ! | ATAGAAGAGGTGGTTGGTTA+GGG | + | chr5_1:647476-647495 | None:intergenic | 40.0% |
| ACATCTCAGAGAGATAGAAG+AGG | + | chr5_1:647489-647508 | None:intergenic | 40.0% | |
| CGTTATGTGAATGTGACTTC+GGG | + | chr5_1:647596-647615 | None:intergenic | 40.0% | |
| GAGTGTGACACATCATTGAA+TGG | + | chr5_1:647747-647766 | None:intergenic | 40.0% | |
| AGAAAGTTCAGAACCAGTGT+TGG | + | chr5_1:647961-647980 | None:intergenic | 40.0% | |
| ! | GATCGTTTTCATGGCTTTCT+TGG | - | chr5_1:648050-648069 | Msa0709490:CDS | 40.0% |
| TTGTTGTGGTTAGTATAGGC+TGG | - | chr5_1:648412-648431 | Msa0709490:CDS | 40.0% | |
| ! | TGGTTAGTATAGGCTGGTTA+TGG | - | chr5_1:648418-648437 | Msa0709490:CDS | 40.0% |
| CTTCAAGCTTGGATATGAAC+AGG | + | chr5_1:649132-649151 | None:intergenic | 40.0% | |
| TGGAAGTTGCTCCATTTATC+TGG | + | chr5_1:649206-649225 | None:intergenic | 40.0% | |
| ! | GGGCACTTCATCAATTGTTT+TGG | - | chr5_1:649468-649487 | Msa0709490:CDS | 40.0% |
| ! | AATTTGGGGCACTTCATCAA+TGG | - | chr5_1:649462-649481 | Msa0709490:CDS | 40.0% |
| ! | GGCACTTCATCAATGGTTTT+GGG | - | chr5_1:649663-649682 | Msa0709490:intron | 40.0% |
| TTCTTCCATCTCTGCTAATC+AGG | - | chr5_1:649836-649855 | Msa0709490:intron | 40.0% | |
| TTTGACCTGATTAGCAGAGA+TGG | + | chr5_1:649844-649863 | None:intergenic | 40.0% | |
| AATCCAACACCAGTGATGAA+GGG | + | chr5_1:649925-649944 | None:intergenic | 40.0% | |
| AAATCCAACACCAGTGATGA+AGG | + | chr5_1:649926-649945 | None:intergenic | 40.0% | |
| AAACAGATGAGCTGATAGAG+AGG | + | chr5_1:650089-650108 | None:intergenic | 40.0% | |
| TGTAGGTACACTATTTCCTC+TGG | + | chr5_1:650273-650292 | None:intergenic | 40.0% | |
| ATAGTCAAGAGGAGTTTGTG+AGG | - | chr5_1:650475-650494 | Msa0709490:intron | 40.0% | |
| TAGTCAAGAGGAGTTTGTGA+GGG | - | chr5_1:650476-650495 | Msa0709490:intron | 40.0% | |
| CAATGCACGTCAATACCATT+CGG | + | chr5_1:650525-650544 | None:intergenic | 40.0% | |
| ! | TTGCTTGGCAGGTCTTATAA+AGG | - | chr5_1:650542-650561 | Msa0709490:intron | 40.0% |
| ! | AACTAGGCTCTTAGGTTGTT+GGG | - | chr5_1:650636-650655 | Msa0709490:intron | 40.0% |
| ! | CATACTTTTACGCCCTCTTT+AGG | - | chr5_1:650763-650782 | Msa0709490:intron | 40.0% |
| AGAGATTAAATGCTGGCACA+AGG | - | chr5_1:650815-650834 | Msa0709490:intron | 40.0% | |
| AGAACTTCCAACTGGGATAT+TGG | - | chr5_1:651049-651068 | Msa0709490:intron | 40.0% | |
| GAGCACATTCTTCTTCTGTT+TGG | + | chr5_1:651106-651125 | None:intergenic | 40.0% | |
| TTAGGTTTACTGCCCAATCT+AGG | + | chr5_1:651166-651185 | None:intergenic | 40.0% | |
| AGATTGGGCAGTAAACCTAA+TGG | - | chr5_1:651166-651185 | Msa0709490:intron | 40.0% | |
| GAACGCACGTAATATTGCAA+TGG | - | chr5_1:651223-651242 | Msa0709490:intron | 40.0% | |
| !! | GGAGATCTTTTAAAGAGCAG+GGG | - | chr5_1:651479-651498 | Msa0709490:intron | 40.0% |
| AAACCTAGACTGCACATCTA+GGG | + | chr5_1:651792-651811 | None:intergenic | 40.0% | |
| TAAACCTAGACTGCACATCT+AGG | + | chr5_1:651793-651812 | None:intergenic | 40.0% | |
| GTGGAACAATACACATCCTT+TGG | - | chr5_1:651836-651855 | Msa0709490:intron | 40.0% | |
| AGGAACATTCAACCATCCAA+AGG | + | chr5_1:651855-651874 | None:intergenic | 40.0% | |
| TGGATGGTTGAATGTTCCTT+TGG | - | chr5_1:651856-651875 | Msa0709490:intron | 40.0% | |
| ! | GGTTGAATGTTCCTTTGGAA+TGG | - | chr5_1:651861-651880 | Msa0709490:intron | 40.0% |
| TCATTGCTACTAGAGTCTTG+AGG | + | chr5_1:652252-652271 | None:intergenic | 40.0% | |
| ! | GGTAGATGTTTGCAGACTTT+TGG | + | chr5_1:652497-652516 | None:intergenic | 40.0% |
| TTCTAGTGGAAATAGGTTGC+TGG | - | chr5_1:652528-652547 | Msa0709490:intron | 40.0% | |
| AACAGGGGAATTGCTCTTAT+TGG | - | chr5_1:652682-652701 | Msa0709490:CDS | 40.0% | |
| !! | TTTTCTATCTTGCTGTCTGG+GGG | - | chr5_1:652767-652786 | Msa0709490:CDS | 40.0% |
| GGGATGGATGACAAGAAAAA+TGG | - | chr5_1:652793-652812 | Msa0709490:CDS | 40.0% | |
| GGATGACAAGTTGTGTAAAG+AGG | - | chr5_1:652917-652936 | Msa0709490:CDS | 40.0% | |
| ATGAAACAGAATGAAGGACG+TGG | + | chr5_1:653027-653046 | None:intergenic | 40.0% | |
| ! | GATAGAAGAGGTGGTTGGTT+AGG | + | chr5_1:647477-647496 | None:intergenic | 45.0% |
| AGAGAGATAGAAGAGGTGGT+TGG | + | chr5_1:647482-647501 | None:intergenic | 45.0% | |
| TCTCAGAGAGATAGAAGAGG+TGG | + | chr5_1:647486-647505 | None:intergenic | 45.0% | |
| AGCGAGAGAGAATCTGATTC+CGG | - | chr5_1:647553-647572 | Msa0709490:three_prime_UTR | 45.0% | |
| GAAGAACAGCTTGAAGGTGA+AGG | + | chr5_1:647720-647739 | None:intergenic | 45.0% | |
| GGACTTGAAGAACAGCTTGA+AGG | + | chr5_1:647726-647745 | None:intergenic | 45.0% | |
| GGGAACTTCATCAATGGTGT+TGG | - | chr5_1:648785-648804 | Msa0709490:intron | 45.0% | |
| AACTGACCGCTTAACCAACA+TGG | + | chr5_1:649429-649448 | None:intergenic | 45.0% | |
| ! | GGGCACTTCATCAATGGTTT+TGG | - | chr5_1:649662-649681 | Msa0709490:intron | 45.0% |
| ! | AATTTGGGACCCTTCATCAC+TGG | - | chr5_1:649913-649932 | Msa0709490:intron | 45.0% |
| ! | GTCCACAGCACAAGTGTTTT+TGG | - | chr5_1:650212-650231 | Msa0709490:CDS | 45.0% |
| CACCAAAAACACTTGTGCTG+TGG | + | chr5_1:650217-650236 | None:intergenic | 45.0% | |
| ! | CAGCTTTCTTTTGATGCCAG+AGG | - | chr5_1:650254-650273 | Msa0709490:intron | 45.0% |
| !! | CAAAGGCATCTGTATGCACA+AGG | - | chr5_1:650308-650327 | Msa0709490:intron | 45.0% |
| TCTGAAGATTCCTTCAGCCT+GGG | + | chr5_1:650442-650461 | None:intergenic | 45.0% | |
| ! | TTCTGAAGATTCCTTCAGCC+TGG | + | chr5_1:650443-650462 | None:intergenic | 45.0% |
| GTGAGGGAACAATTGAACAG+AGG | - | chr5_1:650492-650511 | Msa0709490:intron | 45.0% | |
| GGAACAATTGAACAGAGGAG+TGG | - | chr5_1:650497-650516 | Msa0709490:intron | 45.0% | |
| !! | TGGTATTGACGTGCATTGCT+TGG | - | chr5_1:650527-650546 | Msa0709490:intron | 45.0% |
| ! | GAACTAGGCTCTTAGGTTGT+TGG | - | chr5_1:650635-650654 | Msa0709490:intron | 45.0% |
| ! | GCTCTTAGGTTGTTGGGATT+TGG | - | chr5_1:650642-650661 | Msa0709490:intron | 45.0% |
| CTTGAGAAACTCTGTAGGCT+TGG | - | chr5_1:651021-651040 | Msa0709490:intron | 45.0% | |
| TGGTTCAGAGAACTTCCAAC+TGG | - | chr5_1:651041-651060 | Msa0709490:intron | 45.0% | |
| GGTTCAGAGAACTTCCAACT+GGG | - | chr5_1:651042-651061 | Msa0709490:intron | 45.0% | |
| AAGAATGTGCTCAGCTTGTG+AGG | - | chr5_1:651114-651133 | Msa0709490:intron | 45.0% | |
| GTTTACTGCCCAATCTAGGA+GGG | + | chr5_1:651162-651181 | None:intergenic | 45.0% | |
| TGGCTTACGTGAGTCATGTT+TGG | + | chr5_1:651257-651276 | None:intergenic | 45.0% | |
| ! | GACAAGTACTGCTCTGATTG+GGG | + | chr5_1:651770-651789 | None:intergenic | 45.0% |
| ! | GGACAAGTACTGCTCTGATT+GGG | + | chr5_1:651771-651790 | None:intergenic | 45.0% |
| TCTGCATCTCATGCTCATTG+TGG | - | chr5_1:651817-651836 | Msa0709490:intron | 45.0% | |
| TCTTACACGTCTCTTGCAGA+TGG | - | chr5_1:652180-652199 | Msa0709490:intron | 45.0% | |
| GCATACATCAGAGCAGTCAA+AGG | + | chr5_1:652211-652230 | None:intergenic | 45.0% | |
| !!! | CGATGCACCGTTGTTTTTCA+AGG | - | chr5_1:652354-652373 | Msa0709490:intron | 45.0% |
| GATGACTGTGAAACTGAGAG+TGG | - | chr5_1:652469-652488 | Msa0709490:intron | 45.0% | |
| GATACAGACAAGTGTTCAGC+AGG | - | chr5_1:652646-652665 | Msa0709490:CDS | 45.0% | |
| AGACAAGTGTTCAGCAGGAT+CGG | - | chr5_1:652651-652670 | Msa0709490:CDS | 45.0% | |
| ! | GCTTGGCGTTGAACATGTAA+AGG | - | chr5_1:652736-652755 | Msa0709490:CDS | 45.0% |
| CATCCATTCCATTCCCTTCT+CGG | + | chr5_1:652897-652916 | None:intergenic | 45.0% | |
| GAGAAGGGAATGGAATGGAT+GGG | - | chr5_1:652896-652915 | Msa0709490:CDS | 45.0% | |
| GCGAGAGAGAATCTGATTCC+GGG | - | chr5_1:647554-647573 | Msa0709490:three_prime_UTR | 50.0% | |
| GAGAGAATCTGATTCCGGGT+CGG | - | chr5_1:647558-647577 | Msa0709490:three_prime_UTR | 50.0% | |
| AGAGAATCTGATTCCGGGTC+GGG | - | chr5_1:647559-647578 | Msa0709490:three_prime_UTR | 50.0% | |
| GGAGGTCTTCTTGGAACTTC+AGG | + | chr5_1:648095-648114 | None:intergenic | 50.0% | |
| AGGCATCTGTATGCACAAGG+AGG | - | chr5_1:650311-650330 | Msa0709490:intron | 50.0% | |
| AATGCATACACCCAGGCTGA+AGG | - | chr5_1:650429-650448 | Msa0709490:CDS | 50.0% | |
| ! | AACAGAGGAGTGGTACCGAA+TGG | - | chr5_1:650507-650526 | Msa0709490:intron | 50.0% |
| ATTGACGTGCATTGCTTGGC+AGG | - | chr5_1:650531-650550 | Msa0709490:intron | 50.0% | |
| AGAGGGTCCAATATCCCAGT+TGG | + | chr5_1:651059-651078 | None:intergenic | 50.0% | |
| GGTTTACTGCCCAATCTAGG+AGG | + | chr5_1:651163-651182 | None:intergenic | 50.0% | |
| TCTGAGCAACGTCTGCCATT+AGG | + | chr5_1:651184-651203 | None:intergenic | 50.0% | |
| AATGGCAGACGTTGCTCAGA+TGG | - | chr5_1:651184-651203 | Msa0709490:intron | 50.0% | |
| ! | GGGACAAGTACTGCTCTGAT+TGG | + | chr5_1:651772-651791 | None:intergenic | 50.0% |
| TGTCCCTAGATGTGCAGTCT+AGG | - | chr5_1:651786-651805 | Msa0709490:intron | 50.0% | |
| CGGAAATGATTACAGCGACG+AGG | - | chr5_1:652390-652409 | Msa0709490:intron | 50.0% | |
| CTGGTTGACAGTTGTCCTTG+CGG | - | chr5_1:652547-652566 | Msa0709490:intron | 50.0% | |
| ATTTGAGAGACAACGCCGCA+AGG | + | chr5_1:652565-652584 | None:intergenic | 50.0% | |
| AGGATCGGTGGAGAAGAACA+GGG | - | chr5_1:652666-652685 | Msa0709490:CDS | 50.0% | |
| ! | TATCTTGCTGTCTGGGGGAA+TGG | - | chr5_1:652772-652791 | Msa0709490:CDS | 50.0% |
| ! | ATCTTGCTGTCTGGGGGAAT+GGG | - | chr5_1:652773-652792 | Msa0709490:CDS | 50.0% |
| GATTGCTGATGTCGTCCTAG+TGG | - | chr5_1:652851-652870 | Msa0709490:CDS | 50.0% | |
| CGTTATGCAACGACTCCACT+AGG | + | chr5_1:652869-652888 | None:intergenic | 50.0% | |
| TGCATAACGTCCTTCCGAGA+AGG | - | chr5_1:652880-652899 | Msa0709490:CDS | 50.0% | |
| GCATAACGTCCTTCCGAGAA+GGG | - | chr5_1:652881-652900 | Msa0709490:CDS | 50.0% | |
| CATTCCATTCCCTTCTCGGA+AGG | + | chr5_1:652893-652912 | None:intergenic | 50.0% | |
| CTTCCGAGAAGGGAATGGAA+TGG | - | chr5_1:652891-652910 | Msa0709490:CDS | 50.0% | |
| CGAGAAGGGAATGGAATGGA+TGG | - | chr5_1:652895-652914 | Msa0709490:CDS | 50.0% | |
| ! | CTGTGTGCGTTGCCACATTT+TGG | - | chr5_1:652941-652960 | Msa0709490:CDS | 50.0% |
| TGATTCCGGGTCGGGTAAAG+CGG | - | chr5_1:647567-647586 | Msa0709490:three_prime_UTR | 55.0% | |
| CTGGCACTAGGAGGTCTTCT+TGG | + | chr5_1:648104-648123 | None:intergenic | 55.0% | |
| CAAGAAGACCTCCTAGTGCC+AGG | - | chr5_1:648102-648121 | Msa0709490:CDS | 55.0% | |
| AAGACCTCCTAGTGCCAGGT+TGG | - | chr5_1:648106-648125 | Msa0709490:CDS | 55.0% | |
| AGACCTCCTAGTGCCAGGTT+GGG | - | chr5_1:648107-648126 | Msa0709490:CDS | 55.0% | |
| AGAAAGCCCAACCTGGCACT+AGG | + | chr5_1:648116-648135 | None:intergenic | 55.0% | |
| GGACCCTTCATCACTGGTGT+TGG | - | chr5_1:649919-649938 | Msa0709490:intron | 55.0% | |
| TCACCTGCTCTGGCGAAAGA+GGG | + | chr5_1:651076-651095 | None:intergenic | 55.0% | |
| ATCACCTGCTCTGGCGAAAG+AGG | + | chr5_1:651077-651096 | None:intergenic | 55.0% | |
| AGAAGCCGCCCTCCTAGATT+GGG | - | chr5_1:651151-651170 | Msa0709490:intron | 55.0% | |
| TACTGCCCAATCTAGGAGGG+CGG | + | chr5_1:651159-651178 | None:intergenic | 55.0% | |
| ! | GCTTTGTTGTGAAGGCTCGG+CGG | + | chr5_1:652431-652450 | None:intergenic | 55.0% |
| CAAGTGTTCAGCAGGATCGG+TGG | - | chr5_1:652654-652673 | Msa0709490:CDS | 55.0% | |
| CAGGATCGGTGGAGAAGAAC+AGG | - | chr5_1:652665-652684 | Msa0709490:CDS | 55.0% | |
| GGATCGGTGGAGAAGAACAG+GGG | - | chr5_1:652667-652686 | Msa0709490:CDS | 55.0% | |
| ! | GATCCGAGTTGGCTGAAGCT+TGG | - | chr5_1:652719-652738 | Msa0709490:CDS | 55.0% |
| ACGCCAAGCTTCAGCCAACT+CGG | + | chr5_1:652725-652744 | None:intergenic | 55.0% | |
| ACGTCCTTCCGAGAAGGGAA+TGG | - | chr5_1:652886-652905 | Msa0709490:CDS | 55.0% | |
| GACAACACTGCTGCCCTACA+AGG | + | chr5_1:653201-653220 | None:intergenic | 55.0% | |
| GGTAACCGCTTTACCCGACC+CGG | + | chr5_1:647575-647594 | None:intergenic | 60.0% | |
| AAGCCCAACCTGGCACTAGG+AGG | + | chr5_1:648113-648132 | None:intergenic | 60.0% | |
| GTATGCACAAGGAGGCCTGC+AGG | - | chr5_1:650319-650338 | Msa0709490:intron | 60.0% | |
| TGGGACTGCATCACCTGCTC+TGG | + | chr5_1:651086-651105 | None:intergenic | 60.0% | |
| AGGAGGGCGGCTTCTGTTGA+AGG | + | chr5_1:651146-651165 | None:intergenic | 60.0% | |
| CAGAAGCCGCCCTCCTAGAT+TGG | - | chr5_1:651150-651169 | Msa0709490:intron | 60.0% | |
| TGCTGTCTGGGGGAATGGGA+TGG | - | chr5_1:652777-652796 | Msa0709490:CDS | 60.0% | |
| GGACCCTCTTTCGCCAGAGC+AGG | - | chr5_1:651070-651089 | Msa0709490:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 647451 | 653260 | 647451 | ID=Msa0709490;Name=Msa0709490 |
| chr5_1 | mRNA | 647451 | 653260 | 647451 | ID=Msa0709490-mRNA-1;Parent=Msa0709490;Name=Msa0709490-mRNA-1;_AED=0.05;_eAED=0.05;_QI=245|1|1|1|1|1|5|513|482 |
| chr5_1 | exon | 647451 | 648512 | 647451 | ID=Msa0709490-mRNA-1:exon:258;Parent=Msa0709490-mRNA-1 |
| chr5_1 | exon | 649443 | 649673 | 649443 | ID=Msa0709490-mRNA-1:exon:257;Parent=Msa0709490-mRNA-1 |
| chr5_1 | exon | 650148 | 650267 | 650148 | ID=Msa0709490-mRNA-1:exon:256;Parent=Msa0709490-mRNA-1 |
| chr5_1 | exon | 650371 | 650491 | 650371 | ID=Msa0709490-mRNA-1:exon:255;Parent=Msa0709490-mRNA-1 |
| chr5_1 | exon | 652588 | 653260 | 652588 | ID=Msa0709490-mRNA-1:exon:254;Parent=Msa0709490-mRNA-1 |
| chr5_1 | five_prime_UTR | 653016 | 653260 | 653016 | ID=Msa0709490-mRNA-1:five_prime_utr;Parent=Msa0709490-mRNA-1 |
| chr5_1 | CDS | 652588 | 653015 | 652588 | ID=Msa0709490-mRNA-1:cds;Parent=Msa0709490-mRNA-1 |
| chr5_1 | CDS | 650371 | 650491 | 650371 | ID=Msa0709490-mRNA-1:cds;Parent=Msa0709490-mRNA-1 |
| chr5_1 | CDS | 650148 | 650267 | 650148 | ID=Msa0709490-mRNA-1:cds;Parent=Msa0709490-mRNA-1 |
| chr5_1 | CDS | 649443 | 649673 | 649443 | ID=Msa0709490-mRNA-1:cds;Parent=Msa0709490-mRNA-1 |
| chr5_1 | CDS | 647964 | 648512 | 647964 | ID=Msa0709490-mRNA-1:cds;Parent=Msa0709490-mRNA-1 |
| chr5_1 | three_prime_UTR | 647451 | 647963 | 647451 | ID=Msa0709490-mRNA-1:three_prime_utr;Parent=Msa0709490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
