Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1171350 | XP_003625844.1 | 95.248 | 484 | 14 | 4 | 1 | 482 | 1 | 477 | 0.0 | 944 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1171350 | sp|Q9FMR1|RGAP1_ARATH | 57.692 | 416 | 138 | 7 | 69 | 482 | 87 | 466 | 1.52e-153 | 448 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0709490 | Msa1171350 | 0.997526 | 3.910208e-244 | -8.615850e-47 |
| Msa1125940 | Msa1171350 | 0.827077 | 1.909592e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1171350 | MtrunA17_Chr7g0266501 | 95.248 | 484 | 14 | 4 | 1 | 482 | 1 | 477 | 0.0 | 944 |
| Msa1171350 | MtrunA17_Chr2g0321541 | 55.607 | 428 | 156 | 7 | 69 | 482 | 44 | 451 | 7.13e-151 | 437 |
| Msa1171350 | MtrunA17_Chr4g0026251 | 67.559 | 299 | 89 | 1 | 62 | 360 | 60 | 350 | 7.18e-147 | 424 |
| Msa1171350 | MtrunA17_Chr8g0346171 | 69.288 | 267 | 77 | 1 | 67 | 333 | 79 | 340 | 3.64e-137 | 404 |
| Msa1171350 | MtrunA17_Chr1g0196181 | 66.434 | 286 | 94 | 2 | 62 | 345 | 26 | 311 | 2.10e-128 | 381 |
| Msa1171350 | MtrunA17_Chr7g0268531 | 65.299 | 268 | 92 | 1 | 68 | 334 | 25 | 292 | 2.09e-119 | 357 |
| Msa1171350 | MtrunA17_Chr5g0426461 | 70.701 | 157 | 42 | 1 | 141 | 297 | 16 | 168 | 1.03e-73 | 230 |
| Msa1171350 | MtrunA17_Chr7g0250591 | 66.460 | 161 | 52 | 1 | 141 | 301 | 14 | 172 | 3.27e-70 | 223 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1171350 | AT5G22400.1 | 57.692 | 416 | 138 | 7 | 69 | 482 | 87 | 466 | 1.55e-154 | 448 |
| Msa1171350 | AT3G11490.1 | 54.654 | 419 | 135 | 6 | 71 | 482 | 65 | 435 | 1.56e-148 | 431 |
| Msa1171350 | AT2G46710.1 | 68.030 | 269 | 83 | 2 | 69 | 336 | 71 | 337 | 7.96e-130 | 384 |
| Msa1171350 | AT1G08340.1 | 73.160 | 231 | 62 | 0 | 102 | 332 | 1 | 231 | 4.00e-129 | 378 |
| Msa1171350 | AT4G03100.1 | 64.706 | 289 | 90 | 3 | 70 | 347 | 39 | 326 | 3.36e-128 | 379 |
Find 134 sgRNAs with CRISPR-Local
Find 355 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTATAGAATTTGATGAATT+TGG | 0.118697 | 8_1:-956690 | Msa1171350:three_prime_UTR |
| CGTCGTCATCAAAAGAATTT+AGG | 0.199052 | 8_1:+957457 | None:intergenic |
| AACAGGGGAATTGCTCTTAT+TGG | 0.209429 | 8_1:-957096 | Msa1171350:CDS |
| TCTTCTTCTTCAATGGAAAT+TGG | 0.209719 | 8_1:-961791 | Msa1171350:CDS |
| CTGTGTGCGTTGCCACATTT+TGG | 0.220789 | 8_1:-956837 | Msa1171350:three_prime_UTR |
| TTGATTCAAGAAATGGATTA+TGG | 0.245562 | 8_1:+962126 | None:intergenic |
| AGCACATTCTTCTTCTGTTT+GGG | 0.248997 | 8_1:+958676 | None:intergenic |
| CAAATTTGCTCTATGGCATT+TGG | 0.251916 | 8_1:-957198 | Msa1171350:CDS |
| GGTAGATGTTTGCAGACTTT+TGG | 0.259340 | 8_1:+957284 | None:intergenic |
| TCGCTGTTGTTGTTGTTAAA+AGG | 0.271341 | 8_1:+961983 | None:intergenic |
| AAATTTGCTCTATGGCATTT+GGG | 0.279790 | 8_1:-957197 | Msa1171350:CDS |
| ACGTTTAGGAAATCTTTAAT+TGG | 0.295130 | 8_1:-961848 | Msa1171350:CDS |
| GGAGGTCTTCTTGGAACTTC+AGG | 0.302039 | 8_1:+961686 | None:intergenic |
| GAGCACATTCTTCTTCTGTT+TGG | 0.302295 | 8_1:+958675 | None:intergenic |
| ATTCTTGTTGTTGTTGAATC+TGG | 0.303898 | 8_1:+961936 | None:intergenic |
| CATCCATTCCATTCCCTTCT+CGG | 0.309777 | 8_1:+956884 | None:intergenic |
| GATAGAAGAGGTGGTTGGTT+AGG | 0.324403 | 8_1:+962304 | None:intergenic |
| GTGAAGTTTGATTCAAGAAA+TGG | 0.325343 | 8_1:+962119 | None:intergenic |
| AGAACTTCCAACTGGGATAT+TGG | 0.336988 | 8_1:-958729 | Msa1171350:CDS |
| GTTGTTGTTGAATCTGGTAA+TGG | 0.342290 | 8_1:+961942 | None:intergenic |
| CAGAAGCCGCCCTCCTAGAT+TGG | 0.355136 | 8_1:-958628 | Msa1171350:CDS |
| AGCGAGAGAGAATCTGATTC+CGG | 0.356580 | 8_1:-962225 | Msa1171350:five_prime_UTR |
| CTGGCACTAGGAGGTCTTCT+TGG | 0.357672 | 8_1:+961677 | None:intergenic |
| TAAAAGGTGAAGAATTAGTT+TGG | 0.365796 | 8_1:+961999 | None:intergenic |
| TGTCTCTCAAATTTGCTCTA+TGG | 0.378617 | 8_1:-957205 | Msa1171350:CDS |
| TTCTAGTGGAAATAGGTTGC+TGG | 0.378635 | 8_1:-957250 | Msa1171350:CDS |
| TCTGAGCAACGTCTGCCATT+AGG | 0.381990 | 8_1:+958597 | None:intergenic |
| CAGGATCGGTGGAGAAGAAC+AGG | 0.382654 | 8_1:-957113 | Msa1171350:CDS |
| ATAGAAGAGGTGGTTGGTTA+GGG | 0.382686 | 8_1:+962305 | None:intergenic |
| GAAGTCATGTTTATCCTTGT+AGG | 0.394985 | 8_1:-956594 | Msa1171350:three_prime_UTR |
| TTCAAGGATGAAAGTGAATA+CGG | 0.404020 | 8_1:-957408 | Msa1171350:CDS |
| TGCATTAACAGCAGTATTGT+AGG | 0.406301 | 8_1:+959491 | None:intergenic |
| TGGTTCAGAGAACTTCCAAC+TGG | 0.411594 | 8_1:-958737 | Msa1171350:CDS |
| GCAACATGTCTAACATTAGA+AGG | 0.416824 | 8_1:+961764 | None:intergenic |
| TTGCTTGGCAGGTCTTATAA+AGG | 0.417838 | 8_1:-959236 | Msa1171350:intron |
| CGTTATGTGAATGTGACTTC+GGG | 0.417898 | 8_1:+962185 | None:intergenic |
| TTAGGTTTACTGCCCAATCT+AGG | 0.421349 | 8_1:+958615 | None:intergenic |
| TTCATCAAATTCTATAATAC+AGG | 0.427264 | 8_1:+956695 | None:intergenic |
| CTTCTTCAATGGAAATTGGT+TGG | 0.430621 | 8_1:-961787 | Msa1171350:CDS |
| TTGTTGTTGAATCTGGTAAT+GGG | 0.435508 | 8_1:+961943 | None:intergenic |
| AGGAGGGCGGCTTCTGTTGA+AGG | 0.441531 | 8_1:+958635 | None:intergenic |
| AGAGAATCTGATTCCGGGTC+GGG | 0.443335 | 8_1:-962219 | Msa1171350:five_prime_UTR |
| GCGAGAGAGAATCTGATTCC+GGG | 0.443896 | 8_1:-962224 | Msa1171350:five_prime_UTR |
| CTTCTGTCATGATGAATTGA+TGG | 0.445304 | 8_1:+962095 | None:intergenic |
| ACTTCAGGTTCAAATTCAAC+AGG | 0.454247 | 8_1:+961701 | None:intergenic |
| TGGCTTACGTGAGTCATGTT+TGG | 0.459951 | 8_1:+958524 | None:intergenic |
| CGAGAAGGGAATGGAATGGA+TGG | 0.460271 | 8_1:-956883 | Msa1171350:three_prime_UTR |
| ATTGACGTGCATTGCTTGGC+AGG | 0.464704 | 8_1:-959247 | Msa1171350:CDS |
| ATCACCTGCTCTGGCGAAAG+AGG | 0.480516 | 8_1:+958704 | None:intergenic |
| GGACCCTCTTTCGCCAGAGC+AGG | 0.483438 | 8_1:-958708 | Msa1171350:CDS |
| TGGGACTGCATCACCTGCTC+TGG | 0.485836 | 8_1:+958695 | None:intergenic |
| TGTAGGTACACTATTTCCTC+TGG | 0.485938 | 8_1:+959508 | None:intergenic |
| CAATGTATTATTGTAAGTAG+TGG | 0.486099 | 8_1:-956638 | Msa1171350:three_prime_UTR |
| AAGTCATGTTTATCCTTGTA+GGG | 0.486254 | 8_1:-956593 | Msa1171350:three_prime_UTR |
| AGAAGCCGCCCTCCTAGATT+GGG | 0.488090 | 8_1:-958627 | Msa1171350:CDS |
| ACGTTATGTGAATGTGACTT+CGG | 0.504063 | 8_1:+962184 | None:intergenic |
| TGCATAACGTCCTTCCGAGA+AGG | 0.507199 | 8_1:-956898 | Msa1171350:three_prime_UTR |
| AAAGAATTTAGGTTTGAAGA+GGG | 0.509307 | 8_1:+957468 | None:intergenic |
| GGACTTGAAGAACAGCTTGA+AGG | 0.509334 | 8_1:+962055 | None:intergenic |
| CGTTATGCAACGACTCCACT+AGG | 0.511417 | 8_1:+956912 | None:intergenic |
| TAATCTACTAAGCTTCATCT+TGG | 0.511677 | 8_1:-962335 | None:intergenic |
| AGGGCTTTGTTGTGAAGGCT+CGG | 0.512525 | 8_1:+957347 | None:intergenic |
| GATACAGACAAGTGTTCAGC+AGG | 0.515554 | 8_1:-957132 | Msa1171350:CDS |
| GCATAACGTCCTTCCGAGAA+GGG | 0.518743 | 8_1:-956897 | Msa1171350:three_prime_UTR |
| GTATGCACAAGGAGGCCTGC+AGG | 0.521762 | 8_1:-959459 | Msa1171350:intron |
| AATGGCAGACGTTGCTCAGA+TGG | 0.521999 | 8_1:-958594 | Msa1171350:CDS |
| CAAGAAGACCTCCTAGTGCC+AGG | 0.530845 | 8_1:-961676 | Msa1171350:intron |
| AATAAATTCAAGATCCGAGT+TGG | 0.537228 | 8_1:-957070 | Msa1171350:CDS |
| AATTTGCTCTATGGCATTTG+GGG | 0.539936 | 8_1:-957196 | Msa1171350:CDS |
| TTAATTGGTTGTACCAACAC+TGG | 0.540139 | 8_1:-961833 | Msa1171350:CDS |
| GATCCGAGTTGGCTGAAGCT+TGG | 0.541926 | 8_1:-957059 | Msa1171350:CDS |
| AGATTGGGCAGTAAACCTAA+TGG | 0.543925 | 8_1:-958612 | Msa1171350:CDS |
| AGAAAGCCCAACCTGGCACT+AGG | 0.544520 | 8_1:+961665 | None:intergenic |
| AAAAGAATTTAGGTTTGAAG+AGG | 0.545936 | 8_1:+957467 | None:intergenic |
| AAGGTGAAGAATTAGTTTGG+TGG | 0.548388 | 8_1:+962002 | None:intergenic |
| GACAACACTGCTGCCCTACA+AGG | 0.550124 | 8_1:+956580 | None:intergenic |
| ACGTCCTTCCGAGAAGGGAA+TGG | 0.551542 | 8_1:-956892 | Msa1171350:three_prime_UTR |
| TTCAAGAAATGGATTATGGA+AGG | 0.553058 | 8_1:+962130 | None:intergenic |
| AAGAATGTGCTCAGCTTGTG+AGG | 0.557425 | 8_1:-958664 | Msa1171350:CDS |
| AGACAAGTGTTCAGCAGGAT+CGG | 0.558238 | 8_1:-957127 | Msa1171350:CDS |
| TATCAGAAGCATTCAACTGA+AGG | 0.560255 | 8_1:+957151 | None:intergenic |
| CAATGCACGTCAATACCATT+CGG | 0.560962 | 8_1:+959256 | None:intergenic |
| CATTCCATTCCCTTCTCGGA+AGG | 0.561208 | 8_1:+956888 | None:intergenic |
| TGATTCCGGGTCGGGTAAAG+CGG | 0.564570 | 8_1:-962211 | Msa1171350:five_prime_UTR |
| ACGCCAAGCTTCAGCCAACT+CGG | 0.566606 | 8_1:+957056 | None:intergenic |
| TACTAGACATTTCCAAAATG+TGG | 0.568805 | 8_1:+956825 | None:intergenic |
| TCACCTGCTCTGGCGAAAGA+GGG | 0.570092 | 8_1:+958705 | None:intergenic |
| GGATGACAAGTTGTGTAAAG+AGG | 0.574791 | 8_1:-956861 | Msa1171350:three_prime_UTR |
| CAATACTGCTGTTAATGCAA+AGG | 0.575265 | 8_1:-959487 | Msa1171350:CDS |
| AGAGGGTCCAATATCCCAGT+TGG | 0.580193 | 8_1:+958722 | None:intergenic |
| TGGTATTGACGTGCATTGCT+TGG | 0.583205 | 8_1:-959251 | Msa1171350:CDS |
| TGTGTAGGGCTTTGTTGTGA+AGG | 0.584574 | 8_1:+957342 | None:intergenic |
| GAGTGTGACACATCATTGAA+TGG | 0.586089 | 8_1:+962034 | None:intergenic |
| AATGCATACACCCAGGCTGA+AGG | 0.587533 | 8_1:-959349 | Msa1171350:intron |
| AATGACACTGAAAGAAAGAG+AGG | 0.594982 | 8_1:-957511 | Msa1171350:CDS |
| ACAATAATACATTGAAACAA+AGG | 0.597287 | 8_1:+956647 | None:intergenic |
| GAACGCACGTAATATTGCAA+TGG | 0.602753 | 8_1:-958555 | Msa1171350:CDS |
| CAAGTGTTCAGCAGGATCGG+TGG | 0.605727 | 8_1:-957124 | Msa1171350:CDS |
| TAATGCTGAAAATAGTCAAG+AGG | 0.607711 | 8_1:-959314 | Msa1171350:CDS |
| GGTTTACTGCCCAATCTAGG+AGG | 0.607842 | 8_1:+958618 | None:intergenic |
| GGTAACCGCTTTACCCGACC+CGG | 0.608066 | 8_1:+962206 | None:intergenic |
| TGGTTAATGAAACAGAATGA+AGG | 0.609165 | 8_1:+956748 | None:intergenic |
| GAGAAGGGAATGGAATGGAT+GGG | 0.610900 | 8_1:-956882 | Msa1171350:three_prime_UTR |
| ATAGTCAAGAGGAGTTTGTG+AGG | 0.610910 | 8_1:-959303 | Msa1171350:CDS |
| CAAAGGCATCTGTATGCACA+AGG | 0.611879 | 8_1:-959470 | Msa1171350:CDS |
| GAAGAACAGCTTGAAGGTGA+AGG | 0.613035 | 8_1:+962061 | None:intergenic |
| TCTCAGAGAGATAGAAGAGG+TGG | 0.613836 | 8_1:+962295 | None:intergenic |
| GCTTGGCGTTGAACATGTAA+AGG | 0.614780 | 8_1:-957042 | Msa1171350:exon |
| ACAAATGTTAGAAGTCTGCA+TGG | 0.616003 | 8_1:+956728 | None:intergenic |
| ATTTGAGAGACAACGCCGCA+AGG | 0.616817 | 8_1:+957216 | None:intergenic |
| AGAGAGATAGAAGAGGTGGT+TGG | 0.617445 | 8_1:+962299 | None:intergenic |
| AGAAAGTTCAGAACCAGTGT+TGG | 0.619289 | 8_1:+961820 | None:intergenic |
| GTTTACTGCCCAATCTAGGA+GGG | 0.621031 | 8_1:+958619 | None:intergenic |
| CTTCCGAGAAGGGAATGGAA+TGG | 0.621269 | 8_1:-956887 | Msa1171350:three_prime_UTR |
| GATTGCTGATGTCGTCCTAG+TGG | 0.623238 | 8_1:-956927 | Msa1171350:three_prime_UTR |
| GAGAGAATCTGATTCCGGGT+CGG | 0.626639 | 8_1:-962220 | Msa1171350:five_prime_UTR |
| GCATACATCAGAGCAGTCAA+AGG | 0.627919 | 8_1:+957570 | None:intergenic |
| TAGTCAAGAGGAGTTTGTGA+GGG | 0.628888 | 8_1:-959302 | Msa1171350:CDS |
| AAGCCCAACCTGGCACTAGG+AGG | 0.631333 | 8_1:+961668 | None:intergenic |
| TACTGCCCAATCTAGGAGGG+CGG | 0.635279 | 8_1:+958622 | None:intergenic |
| AACAGAGGAGTGGTACCGAA+TGG | 0.636514 | 8_1:-959271 | Msa1171350:CDS |
| CTGGTTGACAGTTGTCCTTG+CGG | 0.643744 | 8_1:-957231 | Msa1171350:CDS |
| GGTTCAGAGAACTTCCAACT+GGG | 0.656126 | 8_1:-958736 | Msa1171350:CDS |
| AGGATCGGTGGAGAAGAACA+GGG | 0.661117 | 8_1:-957112 | Msa1171350:CDS |
| ATGAAACAGAATGAAGGACG+TGG | 0.670606 | 8_1:+956754 | None:intergenic |
| ACATCTCAGAGAGATAGAAG+AGG | 0.676440 | 8_1:+962292 | None:intergenic |
| GTGAGGGAACAATTGAACAG+AGG | 0.681529 | 8_1:-959286 | Msa1171350:CDS |
| GATGACTGTGAAACTGAGAG+TGG | 0.687837 | 8_1:-957309 | Msa1171350:CDS |
| TCATTGCTACTAGAGTCTTG+AGG | 0.696604 | 8_1:+957529 | None:intergenic |
| CGGAAATGATTACAGCGACG+AGG | 0.709785 | 8_1:-957388 | Msa1171350:CDS |
| GGAACAATTGAACAGAGGAG+TGG | 0.710977 | 8_1:-959281 | Msa1171350:CDS |
| AGGCATCTGTATGCACAAGG+AGG | 0.718397 | 8_1:-959467 | Msa1171350:CDS |
| GGATCGGTGGAGAAGAACAG+GGG | 0.723286 | 8_1:-957111 | Msa1171350:CDS |
| GCTTTGTTGTGAAGGCTCGG+CGG | 0.725223 | 8_1:+957350 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAAAAAAAAAACATAAATT+GGG | + | chr8_1:957361-957380 | None:intergenic | 10.0% |
| !! | ACAAAAAAAAAAACATAAAT+TGG | + | chr8_1:957362-957381 | None:intergenic | 10.0% |
| !!! | TTTTGTTTTATTTGAAATTT+GGG | - | chr8_1:958730-958749 | Msa1171350:CDS | 10.0% |
| !!! | TTTTGTTTTATTTGAAATTT+GGG | - | chr8_1:958730-958749 | Msa1171350:CDS | 10.0% |
| !! | ATGAATATTGATAAATTATT+CGG | - | chr8_1:961059-961078 | Msa1171350:intron | 10.0% |
| !!! | TTTCCAAGAAAATATATTTT+GGG | + | chr8_1:957329-957348 | None:intergenic | 15.0% |
| !!! | ATTTCCAAGAAAATATATTT+TGG | + | chr8_1:957330-957349 | None:intergenic | 15.0% |
| !!! | ACTTTGTTTTATTTGAAATT+TGG | - | chr8_1:957852-957871 | Msa1171350:intron | 15.0% |
| !!! | CTTTGTTTTATTTGAAATTT+GGG | - | chr8_1:957853-957872 | Msa1171350:intron | 15.0% |
| !!! | TTTGTTTTATTTGAAATTTG+GGG | - | chr8_1:957854-957873 | Msa1171350:intron | 15.0% |
| !! | AAAAAATTGAAATCTCAATA+TGG | + | chr8_1:958135-958154 | None:intergenic | 15.0% |
| !!! | ATATTGAGATTTCAATTTTT+TGG | - | chr8_1:958134-958153 | Msa1171350:intron | 15.0% |
| !!! | TATTGAGATTTCAATTTTTT+GGG | - | chr8_1:958135-958154 | Msa1171350:intron | 15.0% |
| !!! | TTTTATAATTTCATAGACAT+TGG | - | chr8_1:958178-958197 | Msa1171350:intron | 15.0% |
| !! | AACATGGAAATAAAATTAAA+AGG | + | chr8_1:958502-958521 | None:intergenic | 15.0% |
| !!! | TTTTAATTTTATTTCCATGT+TGG | - | chr8_1:958501-958520 | Msa1171350:intron | 15.0% |
| !!! | TTTTGTTTTATTCGAAATTT+GGG | - | chr8_1:958536-958555 | Msa1171350:CDS | 15.0% |
| !!! | GTTTTGTTTTATTTGAAATT+TGG | - | chr8_1:958729-958748 | Msa1171350:CDS | 15.0% |
| !!! | TTTGTTTTATTTGAAATTTG+GGG | - | chr8_1:957854-957873 | Msa1171350:intron | 15.0% |
| !!! | GTTTTGTTTTATTTGAAATT+TGG | - | chr8_1:958729-958748 | Msa1171350:CDS | 15.0% |
| !! | TAAATGTTTAGAGATTTATA+TGG | - | chr8_1:959702-959721 | Msa1171350:intron | 15.0% |
| !! | ACATTAGTACATTAAAATTA+GGG | + | chr8_1:959987-960006 | None:intergenic | 15.0% |
| !! | AACATTAGTACATTAAAATT+AGG | + | chr8_1:959988-960007 | None:intergenic | 15.0% |
| !!! | GATTTTAATTTTTGAAATTC+CGG | - | chr8_1:960625-960644 | Msa1171350:intron | 15.0% |
| !! | ATATTATAATTATGCTGAAA+AGG | + | chr8_1:960806-960825 | None:intergenic | 15.0% |
| !! | ATTATAGAATTTGATGAATT+TGG | - | chr8_1:962177-962196 | Msa1171350:five_prime_UTR | 15.0% |
| !!! | TTCCAAGAAAATATATTTTG+GGG | + | chr8_1:957328-957347 | None:intergenic | 20.0% |
| !!! | AAATGCAATTTGTTAAGAAT+CGG | + | chr8_1:957449-957468 | None:intergenic | 20.0% |
| !! | TTTAGTATTTCATAGACATT+AGG | - | chr8_1:957531-957550 | Msa1171350:CDS | 20.0% |
| !!! | GTATATAGATTCGATTTTTT+CGG | - | chr8_1:957639-957658 | Msa1171350:intron | 20.0% |
| !!! | TGAAAATTAGTCTTATTAAG+TGG | - | chr8_1:957737-957756 | Msa1171350:intron | 20.0% |
| !! | CATAATTCTATGAGTATAAA+TGG | + | chr8_1:958343-958362 | None:intergenic | 20.0% |
| !!! | AATAAGACTAATTTGCAAAT+AGG | + | chr8_1:958370-958389 | None:intergenic | 20.0% |
| !!! | TTAGTCTTATTAAGTAGATT+TGG | - | chr8_1:958379-958398 | Msa1171350:intron | 20.0% |
| !!! | GTTTTGTTTTATTCGAAATT+TGG | - | chr8_1:958535-958554 | Msa1171350:CDS | 20.0% |
| !!! | TTTGTTTTATTCGAAATTTG+GGG | - | chr8_1:958537-958556 | Msa1171350:CDS | 20.0% |
| !!! | AATTGTTTTGGATTTATTGT+TGG | - | chr8_1:958569-958588 | Msa1171350:CDS | 20.0% |
| !!! | TATACTACTAATGATTTTAC+TGG | + | chr8_1:958899-958918 | None:intergenic | 20.0% |
| !! | ATTCATCAAACATGTATTAT+AGG | + | chr8_1:959231-959250 | None:intergenic | 20.0% |
| !! | TCAAAACAATGATATAATTC+AGG | + | chr8_1:959258-959277 | None:intergenic | 20.0% |
| !! | TTTGAACTAATAATACATAC+CGG | - | chr8_1:959433-959452 | Msa1171350:intron | 20.0% |
| !! | CATTTAATAGTTCAATTTCA+AGG | + | chr8_1:959502-959521 | None:intergenic | 20.0% |
| !! | AATCTCTAAACATTTAAAAG+AGG | + | chr8_1:959698-959717 | None:intergenic | 20.0% |
| !! | ACCTTCTACTAAATATAAAA+GGG | + | chr8_1:960379-960398 | None:intergenic | 20.0% |
| !! | AACCTTCTACTAAATATAAA+AGG | + | chr8_1:960380-960399 | None:intergenic | 20.0% |
| !!! | TTTCTGATAATTGATTTACA+TGG | - | chr8_1:960523-960542 | Msa1171350:intron | 20.0% |
| !! | CTCAAATAAAATTGAAAAAC+CGG | + | chr8_1:960647-960666 | None:intergenic | 20.0% |
| !! | GTTTAGCAAAATTATAGTAT+TGG | - | chr8_1:961207-961226 | Msa1171350:intron | 20.0% |
| !!! | AAAATTATAGTATTGGATTG+AGG | - | chr8_1:961214-961233 | Msa1171350:intron | 20.0% |
| !!! | TCCACTAGAAATAAAATTTT+CGG | + | chr8_1:961607-961626 | None:intergenic | 20.0% |
| !!! | ATTTTATTTCTAGTGGAAAT+AGG | - | chr8_1:961610-961629 | Msa1171350:intron | 20.0% |
| !!! | ACTTCTAACATTTGTTTTTT+GGG | - | chr8_1:962147-962166 | Msa1171350:five_prime_UTR | 20.0% |
| !! | TTCATCAAATTCTATAATAC+AGG | + | chr8_1:962175-962194 | None:intergenic | 20.0% |
| !! | ACAATAATACATTGAAACAA+AGG | + | chr8_1:962223-962242 | None:intergenic | 20.0% |
| !!! | TTGATTCAAGAAATGGATTA+TGG | + | chr8_1:956744-956763 | None:intergenic | 25.0% |
| ! | TAAAAGGTGAAGAATTAGTT+TGG | + | chr8_1:956871-956890 | None:intergenic | 25.0% |
| ! | ACGTTTAGGAAATCTTTAAT+TGG | - | chr8_1:957019-957038 | Msa1171350:three_prime_UTR | 25.0% |
| ! | AGATTCAGAATAACAAAAAG+GGG | + | chr8_1:957279-957298 | None:intergenic | 25.0% |
| ! | CAGATTCAGAATAACAAAAA+GGG | + | chr8_1:957280-957299 | None:intergenic | 25.0% |
| ! | ACAGATTCAGAATAACAAAA+AGG | + | chr8_1:957281-957300 | None:intergenic | 25.0% |
| !! | TTCCCCAAAATATATTTTCT+TGG | - | chr8_1:957323-957342 | Msa1171350:CDS | 25.0% |
| !!! | AATTTGTTAAGAATCGGATA+TGG | + | chr8_1:957443-957462 | None:intergenic | 25.0% |
| ! | AAGTTGCATAACAAATGTAA+TGG | - | chr8_1:957603-957622 | Msa1171350:intron | 25.0% |
| !!! | ATTCGATTTTTTCGGATAAA+TGG | - | chr8_1:957647-957666 | Msa1171350:intron | 25.0% |
| !! | AGACTAATTTTCAAATACAC+AGG | + | chr8_1:957730-957749 | None:intergenic | 25.0% |
| !!! | TTAGTCTTATTAAGTGGATT+TGG | - | chr8_1:957743-957762 | Msa1171350:intron | 25.0% |
| ! | CAAAATATCAATTACACACT+TGG | - | chr8_1:957998-958017 | Msa1171350:intron | 25.0% |
| !! | ATGCAATTTTTGTTCAGAAT+CGG | + | chr8_1:958096-958115 | None:intergenic | 25.0% |
| !!! | TCAATTTTTTGGGTTAGTAT+AGG | - | chr8_1:958145-958164 | Msa1171350:intron | 25.0% |
| ! | GATGTAATTGATGCTTTATA+AGG | - | chr8_1:958251-958270 | Msa1171350:intron | 25.0% |
| !!! | TTCAGTTTTTTCCAGATAAA+TGG | - | chr8_1:958281-958300 | Msa1171350:intron | 25.0% |
| !!! | TATTAAGTAGATTTGGTTCT+TGG | - | chr8_1:958386-958405 | Msa1171350:intron | 25.0% |
| ! | AAAGATATGAGAAAAATGAG+AGG | - | chr8_1:958418-958437 | Msa1171350:intron | 25.0% |
| ! | ATTTATTGTTGGAAGAGAAT+CGG | - | chr8_1:958580-958599 | Msa1171350:CDS | 25.0% |
| !!! | AATGGTTTTGGGTTTATTAT+TGG | - | chr8_1:958763-958782 | Msa1171350:intron | 25.0% |
| ! | CATAATCAACAAGGAATAAA+AGG | + | chr8_1:958960-958979 | None:intergenic | 25.0% |
| ! | CAAAATATCATTTACACACT+TGG | - | chr8_1:959145-959164 | Msa1171350:intron | 25.0% |
| ! | ATCAAACATGTATTATAGGT+CGG | + | chr8_1:959227-959246 | None:intergenic | 25.0% |
| !!! | TATATCATTGTTTTGACTGT+TGG | - | chr8_1:959262-959281 | Msa1171350:CDS | 25.0% |
| ! | AACATTTAAAAGAGGAAAGA+GGG | + | chr8_1:959690-959709 | None:intergenic | 25.0% |
| ! | AAACATTTAAAAGAGGAAAG+AGG | + | chr8_1:959691-959710 | None:intergenic | 25.0% |
| ! | TTAGAGATTTATATGGAACT+AGG | - | chr8_1:959709-959728 | Msa1171350:intron | 25.0% |
| !!! | TATGCAGTTTTGTAATTTGT+GGG | + | chr8_1:959836-959855 | None:intergenic | 25.0% |
| !!! | TTTTCCTTTTTTAGTTACTG+TGG | - | chr8_1:960013-960032 | Msa1171350:intron | 25.0% |
| !!! | TTTCCTTTTTTAGTTACTGT+GGG | - | chr8_1:960014-960033 | Msa1171350:intron | 25.0% |
| !! | TATAAAAGGGAACATGATTT+TGG | + | chr8_1:960366-960385 | None:intergenic | 25.0% |
| !! | TCCCTTTTATATTTAGTAGA+AGG | - | chr8_1:960375-960394 | Msa1171350:intron | 25.0% |
| ! | AAGTTCAATCGCAAAAAAAA+GGG | + | chr8_1:960415-960434 | None:intergenic | 25.0% |
| ! | TTATATCCTTACTTCTATGT+TGG | - | chr8_1:960454-960473 | Msa1171350:intron | 25.0% |
| ! | CAAAAGTCTATTTAAGGATA+TGG | + | chr8_1:960549-960568 | None:intergenic | 25.0% |
| !! | CATATCCTTAAATAGACTTT+TGG | - | chr8_1:960547-960566 | Msa1171350:intron | 25.0% |
| ! | GTAAAATGCAAAGTAGTTTA+AGG | - | chr8_1:960603-960622 | Msa1171350:intron | 25.0% |
| !! | TATTTGAGACTTTGTTCTTT+AGG | - | chr8_1:960659-960678 | Msa1171350:intron | 25.0% |
| ! | AGGTTAAGATAATCAAACAT+TGG | + | chr8_1:960693-960712 | None:intergenic | 25.0% |
| ! | AGATAACATTATTCTCTACT+AGG | + | chr8_1:960713-960732 | None:intergenic | 25.0% |
| !! | AAAGAATTTAGGTTTGAAGA+GGG | + | chr8_1:961402-961421 | None:intergenic | 25.0% |
| !! | AAAAGAATTTAGGTTTGAAG+AGG | + | chr8_1:961403-961422 | None:intergenic | 25.0% |
| !! | TCATCTTTAAAAAGATGTGT+AGG | + | chr8_1:961543-961562 | None:intergenic | 25.0% |
| !!! | ACCGAAAATTTTATTTCTAG+TGG | - | chr8_1:961603-961622 | Msa1171350:intron | 25.0% |
| !!! | GACTTCTAACATTTGTTTTT+TGG | - | chr8_1:962146-962165 | Msa1171350:five_prime_UTR | 25.0% |
| ! | CAATGTATTATTGTAAGTAG+TGG | - | chr8_1:962229-962248 | Msa1171350:five_prime_UTR | 25.0% |
| !!! | TTCATATCGCTGTTTTTAAA+GGG | + | chr8_1:962316-962335 | None:intergenic | 25.0% |
| !! | TTCAAGAAATGGATTATGGA+AGG | + | chr8_1:956740-956759 | None:intergenic | 30.0% |
| GTGAAGTTTGATTCAAGAAA+TGG | + | chr8_1:956751-956770 | None:intergenic | 30.0% | |
| ! | TTGTTGTTGAATCTGGTAAT+GGG | + | chr8_1:956927-956946 | None:intergenic | 30.0% |
| !! | ATTCTTGTTGTTGTTGAATC+TGG | + | chr8_1:956934-956953 | None:intergenic | 30.0% |
| TTCTTCTTCTTCTTCTTCAA+TGG | - | chr8_1:957069-957088 | Msa1171350:CDS | 30.0% | |
| TCTTCTTCTTCAATGGAAAT+TGG | - | chr8_1:957076-957095 | Msa1171350:CDS | 30.0% | |
| !!! | GTTACTTTTGATCGTTTTCA+TGG | - | chr8_1:957130-957149 | Msa1171350:CDS | 30.0% |
| GAATCTGTGATTCATACAAT+TGG | - | chr8_1:957293-957312 | Msa1171350:CDS | 30.0% | |
| AACAAATCGAAATCTCGATA+TGG | + | chr8_1:957486-957505 | None:intergenic | 30.0% | |
| ! | TGCATAACAAATGTAATGGA+AGG | - | chr8_1:957607-957626 | Msa1171350:intron | 30.0% |
| ATCGAATCTATATACTGTAG+AGG | + | chr8_1:957634-957653 | None:intergenic | 30.0% | |
| AACATGAAATGTCATAAGGA+TGG | + | chr8_1:957681-957700 | None:intergenic | 30.0% | |
| GCATAACATGAAATGTCATA+AGG | + | chr8_1:957685-957704 | None:intergenic | 30.0% | |
| TGTATCTAGGAAAAGATATC+AGG | - | chr8_1:957771-957790 | Msa1171350:intron | 30.0% | |
| AAAGATATCAGGAAAATGAG+AGG | - | chr8_1:957782-957801 | Msa1171350:intron | 30.0% | |
| ACAAAGTGTATTAGCAAAGA+TGG | + | chr8_1:957839-957858 | None:intergenic | 30.0% | |
| ! | AATGGTGTTGGATTTATCAT+TGG | - | chr8_1:957886-957905 | Msa1171350:intron | 30.0% |
| TTGTCAGTTTGTATCAAAGA+AGG | + | chr8_1:957981-958000 | None:intergenic | 30.0% | |
| ! | TTTTTGTTCAGAATCGGATA+TGG | + | chr8_1:958090-958109 | None:intergenic | 30.0% |
| ATATGAGAAAAATGAGAGGA+AGG | - | chr8_1:958422-958441 | Msa1171350:intron | 30.0% | |
| !! | TTTGACTTGATTAGCAAAGA+AGG | + | chr8_1:958475-958494 | None:intergenic | 30.0% |
| ! | TTATTTCCATGTTGGTTAAG+CGG | - | chr8_1:958509-958528 | Msa1171350:intron | 30.0% |
| !!! | GACAATTAGTCTTTTGAAGT+CGG | - | chr8_1:958662-958681 | Msa1171350:CDS | 30.0% |
| TTTACAGCTAGTATCATTGT+TGG | - | chr8_1:958695-958714 | Msa1171350:CDS | 30.0% | |
| ! | GATTATTTCTTGCAACTGAA+AGG | - | chr8_1:958795-958814 | Msa1171350:intron | 30.0% |
| !!! | GACAATTAGTCTTTTGAAGT+CGG | - | chr8_1:958662-958681 | Msa1171350:CDS | 30.0% |
| AACTGACAACATAATCAACA+AGG | + | chr8_1:958969-958988 | None:intergenic | 30.0% | |
| !!! | TATCAGCTCATCTGTTTTTT+TGG | - | chr8_1:959181-959200 | Msa1171350:intron | 30.0% |
| TCAAACATGTATTATAGGTC+GGG | + | chr8_1:959226-959245 | None:intergenic | 30.0% | |
| ! | GACTGTTGGTATATTTTCAA+TGG | - | chr8_1:959276-959295 | Msa1171350:CDS | 30.0% |
| TTATTAGTTCAAATACCTGC+AGG | + | chr8_1:959426-959445 | None:intergenic | 30.0% | |
| TACACAACAGATCATACAAA+AGG | + | chr8_1:959462-959481 | None:intergenic | 30.0% | |
| ATAGTTCAATTTCAAGGTTC+AGG | + | chr8_1:959496-959515 | None:intergenic | 30.0% | |
| TAATGCTGAAAATAGTCAAG+AGG | - | chr8_1:959553-959572 | Msa1171350:CDS | 30.0% | |
| !! | ATGCAGTTTTGTAATTTGTG+GGG | + | chr8_1:959835-959854 | None:intergenic | 30.0% |
| !! | GTATGCAGTTTTGTAATTTG+TGG | + | chr8_1:959837-959856 | None:intergenic | 30.0% |
| !!! | ACATTTTTAGTCCCTAAAGA+GGG | + | chr8_1:959867-959886 | None:intergenic | 30.0% |
| AATTCGTAGAGATTAAATGC+TGG | - | chr8_1:959897-959916 | Msa1171350:intron | 30.0% | |
| !!! | TTCCTTTTTTAGTTACTGTG+GGG | - | chr8_1:960015-960034 | Msa1171350:intron | 30.0% |
| TCTAGGTAGCTATATTGAAA+GGG | - | chr8_1:960064-960083 | Msa1171350:intron | 30.0% | |
| ATATACTTGAGAAACTCTGT+AGG | - | chr8_1:960105-960124 | Msa1171350:intron | 30.0% | |
| AGTTCAATCGCAAAAAAAAG+GGG | + | chr8_1:960414-960433 | None:intergenic | 30.0% | |
| GAAGTTCAATCGCAAAAAAA+AGG | + | chr8_1:960416-960435 | None:intergenic | 30.0% | |
| ! | ACTTCAAAGACATTTTGTTG+TGG | - | chr8_1:960431-960450 | Msa1171350:intron | 30.0% |
| AACTAACCAACATAGAAGTA+AGG | + | chr8_1:960463-960482 | None:intergenic | 30.0% | |
| GATCTCCAAAAGTCTATTTA+AGG | + | chr8_1:960555-960574 | None:intergenic | 30.0% | |
| !!! | TGTTATCTTGTTTTGTCGTT+TGG | - | chr8_1:960725-960744 | Msa1171350:intron | 30.0% |
| !! | CACTGATGACTGTATTTTTA+TGG | + | chr8_1:960762-960781 | None:intergenic | 30.0% |
| !!! | CTAAATTCTTTTGATGACGA+CGG | - | chr8_1:961411-961430 | Msa1171350:intron | 30.0% |
| !!! | TAAATTCTTTTGATGACGAC+GGG | - | chr8_1:961412-961431 | Msa1171350:intron | 30.0% |
| CTTTCATCCTTGAAAAACAA+CGG | + | chr8_1:961453-961472 | None:intergenic | 30.0% | |
| TTCAAGGATGAAAGTGAATA+CGG | - | chr8_1:961459-961478 | Msa1171350:intron | 30.0% | |
| ! | AAATTTGCTCTATGGCATTT+GGG | - | chr8_1:961670-961689 | Msa1171350:intron | 30.0% |
| AATAAATTCAAGATCCGAGT+TGG | - | chr8_1:961797-961816 | Msa1171350:CDS | 30.0% | |
| !!! | TTTTTTCTATCTTGCTGTCT+GGG | - | chr8_1:961854-961873 | Msa1171350:CDS | 30.0% |
| TACTAGACATTTCCAAAATG+TGG | + | chr8_1:962045-962064 | None:intergenic | 30.0% | |
| !! | GTGTTGTTGTGTTATGTTTT+CGG | - | chr8_1:962077-962096 | Msa1171350:CDS | 30.0% |
| ! | TGTTGTTGTGTTATGTTTTC+GGG | - | chr8_1:962078-962097 | Msa1171350:CDS | 30.0% |
| TGGTTAATGAAACAGAATGA+AGG | + | chr8_1:962122-962141 | None:intergenic | 30.0% | |
| AAGTCATGTTTATCCTTGTA+GGG | - | chr8_1:962274-962293 | Msa1171350:five_prime_UTR | 30.0% | |
| !!! | CTTCATATCGCTGTTTTTAA+AGG | + | chr8_1:962317-962336 | None:intergenic | 30.0% |
| TAAAAACAGCGATATGAAGT+TGG | - | chr8_1:962318-962337 | Msa1171350:five_prime_UTR | 30.0% | |
| ACGTTATGTGAATGTGACTT+CGG | + | chr8_1:956686-956705 | None:intergenic | 35.0% | |
| CTTCTGTCATGATGAATTGA+TGG | + | chr8_1:956775-956794 | None:intergenic | 35.0% | |
| ! | AAGGTGAAGAATTAGTTTGG+TGG | + | chr8_1:956868-956887 | None:intergenic | 35.0% |
| ! | TCGCTGTTGTTGTTGTTAAA+AGG | + | chr8_1:956887-956906 | None:intergenic | 35.0% |
| ! | GTTGTTGTTGAATCTGGTAA+TGG | + | chr8_1:956928-956947 | None:intergenic | 35.0% |
| !! | CTCTTTTGATTGCTACGTTT+AGG | - | chr8_1:957005-957024 | Msa1171350:three_prime_UTR | 35.0% |
| TTAATTGGTTGTACCAACAC+TGG | - | chr8_1:957034-957053 | Msa1171350:exon | 35.0% | |
| CTTCTTCAATGGAAATTGGT+TGG | - | chr8_1:957080-957099 | Msa1171350:CDS | 35.0% | |
| GCAACATGTCTAACATTAGA+AGG | + | chr8_1:957106-957125 | None:intergenic | 35.0% | |
| ! | ACTTCAGGTTCAAATTCAAC+AGG | + | chr8_1:957169-957188 | None:intergenic | 35.0% |
| AATTTAAAGAAAGCCCAACC+TGG | + | chr8_1:957212-957231 | None:intergenic | 35.0% | |
| !! | ATCGAGATTTCGATTTGTTG+TGG | - | chr8_1:957487-957506 | Msa1171350:CDS | 35.0% |
| !! | CGATTTGTTGTGGTTAGTAT+AGG | - | chr8_1:957497-957516 | Msa1171350:CDS | 35.0% |
| ! | GGATTTGGTTCATTGTATCT+AGG | - | chr8_1:957758-957777 | Msa1171350:intron | 35.0% |
| ATATCAGGAAAATGAGAGGA+AGG | - | chr8_1:957786-957805 | Msa1171350:intron | 35.0% | |
| AATTTGGGGAACTTCATCAA+TGG | - | chr8_1:957868-957887 | Msa1171350:intron | 35.0% | |
| CTATTAAGCAACTTCAAGCT+TGG | + | chr8_1:958232-958251 | None:intergenic | 35.0% | |
| ATCACAACAAGTCATCAGAA+TGG | + | chr8_1:958315-958334 | None:intergenic | 35.0% | |
| !! | GGTTATTTCTTACAACTGAG+AGG | - | chr8_1:958601-958620 | Msa1171350:CDS | 35.0% |
| TGCATTAACAGCAGTATTGT+AGG | + | chr8_1:959379-959398 | None:intergenic | 35.0% | |
| CAATACTGCTGTTAATGCAA+AGG | - | chr8_1:959380-959399 | Msa1171350:intron | 35.0% | |
| CAGATCATACAAAAGGTTTC+CGG | + | chr8_1:959455-959474 | None:intergenic | 35.0% | |
| ACTATTAAATGCATACACCC+AGG | - | chr8_1:959511-959530 | Msa1171350:CDS | 35.0% | |
| TTATATGGAACTAGGCTCTT+AGG | - | chr8_1:959717-959736 | Msa1171350:intron | 35.0% | |
| ACAACGTTCAAATAGACGAT+AGG | + | chr8_1:959758-959777 | None:intergenic | 35.0% | |
| GGGAATGAAAACTGGATATA+AGG | + | chr8_1:959815-959834 | None:intergenic | 35.0% | |
| AATTTGTGGGGAATGAAAAC+TGG | + | chr8_1:959823-959842 | None:intergenic | 35.0% | |
| ! | ATACTTTTACGCCCTCTTTA+GGG | - | chr8_1:959853-959872 | Msa1171350:intron | 35.0% |
| !!! | CACATTTTTAGTCCCTAAAG+AGG | + | chr8_1:959868-959887 | None:intergenic | 35.0% |
| TTCCCCACAGTAACTAAAAA+AGG | + | chr8_1:960020-960039 | None:intergenic | 35.0% | |
| TTAGTTACTGTGGGGAAATA+TGG | - | chr8_1:960023-960042 | Msa1171350:intron | 35.0% | |
| AATTGCATACGAAGTTGTCT+AGG | - | chr8_1:960047-960066 | Msa1171350:intron | 35.0% | |
| GTCTAGGTAGCTATATTGAA+AGG | - | chr8_1:960063-960082 | Msa1171350:intron | 35.0% | |
| AGCACATTCTTCTTCTGTTT+GGG | + | chr8_1:960194-960213 | None:intergenic | 35.0% | |
| !! | TTGGAGATCTTTTAAAGAGC+AGG | - | chr8_1:960566-960585 | Msa1171350:intron | 35.0% |
| !! | TGGAGATCTTTTAAAGAGCA+GGG | - | chr8_1:960567-960586 | Msa1171350:intron | 35.0% |
| AACAATACACATCCTTTGGA+TGG | - | chr8_1:960929-960948 | Msa1171350:intron | 35.0% | |
| ATATGAACATGCCATTCCAA+AGG | + | chr8_1:960964-960983 | None:intergenic | 35.0% | |
| !! | TCGGATTAGTGCTATGAATT+TGG | - | chr8_1:961078-961097 | Msa1171350:intron | 35.0% |
| ATGAATTTGGCTGCAATTTC+TGG | - | chr8_1:961091-961110 | Msa1171350:intron | 35.0% | |
| TTAGTATCAGTCAAAGATCG+AGG | - | chr8_1:961150-961169 | Msa1171350:intron | 35.0% | |
| AATGACACTGAAAGAAAGAG+AGG | - | chr8_1:961356-961375 | Msa1171350:intron | 35.0% | |
| CGTCGTCATCAAAAGAATTT+AGG | + | chr8_1:961413-961432 | None:intergenic | 35.0% | |
| ! | TGTCTCTCAAATTTGCTCTA+TGG | - | chr8_1:961662-961681 | Msa1171350:intron | 35.0% |
| ! | CAAATTTGCTCTATGGCATT+TGG | - | chr8_1:961669-961688 | Msa1171350:intron | 35.0% |
| ! | AATTTGCTCTATGGCATTTG+GGG | - | chr8_1:961671-961690 | Msa1171350:intron | 35.0% |
| !! | TATCAGAAGCATTCAACTGA+AGG | + | chr8_1:961719-961738 | None:intergenic | 35.0% |
| !!! | GTTTTTTCTATCTTGCTGTC+TGG | - | chr8_1:961853-961872 | Msa1171350:CDS | 35.0% |
| !! | TTTTTCTATCTTGCTGTCTG+GGG | - | chr8_1:961855-961874 | Msa1171350:CDS | 35.0% |
| ACAAATGTTAGAAGTCTGCA+TGG | + | chr8_1:962142-962161 | None:intergenic | 35.0% | |
| GAAGTCATGTTTATCCTTGT+AGG | - | chr8_1:962273-962292 | Msa1171350:five_prime_UTR | 35.0% | |
| ! | ATAGAAGAGGTGGTTGGTTA+GGG | + | chr8_1:956565-956584 | None:intergenic | 40.0% |
| ACATCTCAGAGAGATAGAAG+AGG | + | chr8_1:956578-956597 | None:intergenic | 40.0% | |
| CGTTATGTGAATGTGACTTC+GGG | + | chr8_1:956685-956704 | None:intergenic | 40.0% | |
| GAGTGTGACACATCATTGAA+TGG | + | chr8_1:956836-956855 | None:intergenic | 40.0% | |
| AGAAAGTTCAGAACCAGTGT+TGG | + | chr8_1:957050-957069 | None:intergenic | 40.0% | |
| ! | GATCGTTTTCATGGCTTTCT+TGG | - | chr8_1:957139-957158 | Msa1171350:CDS | 40.0% |
| TTGTTGTGGTTAGTATAGGC+TGG | - | chr8_1:957501-957520 | Msa1171350:CDS | 40.0% | |
| ! | TGGTTAGTATAGGCTGGTTA+TGG | - | chr8_1:957507-957526 | Msa1171350:CDS | 40.0% |
| CTTCAAGCTTGGATATGAAC+AGG | + | chr8_1:958221-958240 | None:intergenic | 40.0% | |
| TGGAAGTTGCTCCATTTATC+TGG | + | chr8_1:958295-958314 | None:intergenic | 40.0% | |
| ! | GGGCACTTCATCAATTGTTT+TGG | - | chr8_1:958557-958576 | Msa1171350:CDS | 40.0% |
| ! | AATTTGGGGCACTTCATCAA+TGG | - | chr8_1:958551-958570 | Msa1171350:CDS | 40.0% |
| ! | GGCACTTCATCAATGGTTTT+GGG | - | chr8_1:958752-958771 | Msa1171350:intron | 40.0% |
| TTCTTCCATCTCTGCTAATC+AGG | - | chr8_1:958925-958944 | Msa1171350:intron | 40.0% | |
| TTTGACCTGATTAGCAGAGA+TGG | + | chr8_1:958933-958952 | None:intergenic | 40.0% | |
| AATCCAACACCAGTGATGAA+GGG | + | chr8_1:959014-959033 | None:intergenic | 40.0% | |
| AAATCCAACACCAGTGATGA+AGG | + | chr8_1:959015-959034 | None:intergenic | 40.0% | |
| AAACAGATGAGCTGATAGAG+AGG | + | chr8_1:959178-959197 | None:intergenic | 40.0% | |
| TGTAGGTACACTATTTCCTC+TGG | + | chr8_1:959362-959381 | None:intergenic | 40.0% | |
| ATAGTCAAGAGGAGTTTGTG+AGG | - | chr8_1:959564-959583 | Msa1171350:intron | 40.0% | |
| TAGTCAAGAGGAGTTTGTGA+GGG | - | chr8_1:959565-959584 | Msa1171350:intron | 40.0% | |
| CAATGCACGTCAATACCATT+CGG | + | chr8_1:959614-959633 | None:intergenic | 40.0% | |
| ! | TTGCTTGGCAGGTCTTATAA+AGG | - | chr8_1:959631-959650 | Msa1171350:intron | 40.0% |
| ! | AACTAGGCTCTTAGGTTGTT+GGG | - | chr8_1:959725-959744 | Msa1171350:intron | 40.0% |
| ! | CATACTTTTACGCCCTCTTT+AGG | - | chr8_1:959852-959871 | Msa1171350:intron | 40.0% |
| AGAGATTAAATGCTGGCACA+AGG | - | chr8_1:959904-959923 | Msa1171350:intron | 40.0% | |
| AGAACTTCCAACTGGGATAT+TGG | - | chr8_1:960138-960157 | Msa1171350:intron | 40.0% | |
| GAGCACATTCTTCTTCTGTT+TGG | + | chr8_1:960195-960214 | None:intergenic | 40.0% | |
| TTAGGTTTACTGCCCAATCT+AGG | + | chr8_1:960255-960274 | None:intergenic | 40.0% | |
| AGATTGGGCAGTAAACCTAA+TGG | - | chr8_1:960255-960274 | Msa1171350:intron | 40.0% | |
| GAACGCACGTAATATTGCAA+TGG | - | chr8_1:960312-960331 | Msa1171350:intron | 40.0% | |
| !! | GGAGATCTTTTAAAGAGCAG+GGG | - | chr8_1:960568-960587 | Msa1171350:intron | 40.0% |
| AAACCTAGACTGCACATCTA+GGG | + | chr8_1:960881-960900 | None:intergenic | 40.0% | |
| TAAACCTAGACTGCACATCT+AGG | + | chr8_1:960882-960901 | None:intergenic | 40.0% | |
| GTGGAACAATACACATCCTT+TGG | - | chr8_1:960925-960944 | Msa1171350:intron | 40.0% | |
| AGGAACATTCAACCATCCAA+AGG | + | chr8_1:960944-960963 | None:intergenic | 40.0% | |
| TGGATGGTTGAATGTTCCTT+TGG | - | chr8_1:960945-960964 | Msa1171350:intron | 40.0% | |
| ! | GGTTGAATGTTCCTTTGGAA+TGG | - | chr8_1:960950-960969 | Msa1171350:intron | 40.0% |
| TCATTGCTACTAGAGTCTTG+AGG | + | chr8_1:961341-961360 | None:intergenic | 40.0% | |
| ! | GGTAGATGTTTGCAGACTTT+TGG | + | chr8_1:961586-961605 | None:intergenic | 40.0% |
| TTCTAGTGGAAATAGGTTGC+TGG | - | chr8_1:961617-961636 | Msa1171350:intron | 40.0% | |
| AACAGGGGAATTGCTCTTAT+TGG | - | chr8_1:961771-961790 | Msa1171350:CDS | 40.0% | |
| !! | TTTTCTATCTTGCTGTCTGG+GGG | - | chr8_1:961856-961875 | Msa1171350:CDS | 40.0% |
| GGGATGGATGACAAGAAAAA+TGG | - | chr8_1:961882-961901 | Msa1171350:CDS | 40.0% | |
| GGATGACAAGTTGTGTAAAG+AGG | - | chr8_1:962006-962025 | Msa1171350:CDS | 40.0% | |
| ATGAAACAGAATGAAGGACG+TGG | + | chr8_1:962116-962135 | None:intergenic | 40.0% | |
| ! | GATAGAAGAGGTGGTTGGTT+AGG | + | chr8_1:956566-956585 | None:intergenic | 45.0% |
| AGAGAGATAGAAGAGGTGGT+TGG | + | chr8_1:956571-956590 | None:intergenic | 45.0% | |
| TCTCAGAGAGATAGAAGAGG+TGG | + | chr8_1:956575-956594 | None:intergenic | 45.0% | |
| AGCGAGAGAGAATCTGATTC+CGG | - | chr8_1:956642-956661 | Msa1171350:three_prime_UTR | 45.0% | |
| GAAGAACAGCTTGAAGGTGA+AGG | + | chr8_1:956809-956828 | None:intergenic | 45.0% | |
| GGACTTGAAGAACAGCTTGA+AGG | + | chr8_1:956815-956834 | None:intergenic | 45.0% | |
| GGGAACTTCATCAATGGTGT+TGG | - | chr8_1:957874-957893 | Msa1171350:intron | 45.0% | |
| AACTGACCGCTTAACCAACA+TGG | + | chr8_1:958518-958537 | None:intergenic | 45.0% | |
| ! | GGGCACTTCATCAATGGTTT+TGG | - | chr8_1:958751-958770 | Msa1171350:intron | 45.0% |
| ! | AATTTGGGACCCTTCATCAC+TGG | - | chr8_1:959002-959021 | Msa1171350:intron | 45.0% |
| ! | GTCCACAGCACAAGTGTTTT+TGG | - | chr8_1:959301-959320 | Msa1171350:CDS | 45.0% |
| CACCAAAAACACTTGTGCTG+TGG | + | chr8_1:959306-959325 | None:intergenic | 45.0% | |
| ! | CAGCTTTCTTTTGATGCCAG+AGG | - | chr8_1:959343-959362 | Msa1171350:intron | 45.0% |
| !! | CAAAGGCATCTGTATGCACA+AGG | - | chr8_1:959397-959416 | Msa1171350:intron | 45.0% |
| TCTGAAGATTCCTTCAGCCT+GGG | + | chr8_1:959531-959550 | None:intergenic | 45.0% | |
| ! | TTCTGAAGATTCCTTCAGCC+TGG | + | chr8_1:959532-959551 | None:intergenic | 45.0% |
| GTGAGGGAACAATTGAACAG+AGG | - | chr8_1:959581-959600 | Msa1171350:intron | 45.0% | |
| GGAACAATTGAACAGAGGAG+TGG | - | chr8_1:959586-959605 | Msa1171350:intron | 45.0% | |
| !! | TGGTATTGACGTGCATTGCT+TGG | - | chr8_1:959616-959635 | Msa1171350:intron | 45.0% |
| ! | GAACTAGGCTCTTAGGTTGT+TGG | - | chr8_1:959724-959743 | Msa1171350:intron | 45.0% |
| ! | GCTCTTAGGTTGTTGGGATT+TGG | - | chr8_1:959731-959750 | Msa1171350:intron | 45.0% |
| CTTGAGAAACTCTGTAGGCT+TGG | - | chr8_1:960110-960129 | Msa1171350:intron | 45.0% | |
| TGGTTCAGAGAACTTCCAAC+TGG | - | chr8_1:960130-960149 | Msa1171350:intron | 45.0% | |
| GGTTCAGAGAACTTCCAACT+GGG | - | chr8_1:960131-960150 | Msa1171350:intron | 45.0% | |
| AAGAATGTGCTCAGCTTGTG+AGG | - | chr8_1:960203-960222 | Msa1171350:intron | 45.0% | |
| GTTTACTGCCCAATCTAGGA+GGG | + | chr8_1:960251-960270 | None:intergenic | 45.0% | |
| TGGCTTACGTGAGTCATGTT+TGG | + | chr8_1:960346-960365 | None:intergenic | 45.0% | |
| ! | GACAAGTACTGCTCTGATTG+GGG | + | chr8_1:960859-960878 | None:intergenic | 45.0% |
| ! | GGACAAGTACTGCTCTGATT+GGG | + | chr8_1:960860-960879 | None:intergenic | 45.0% |
| TCTGCATCTCATGCTCATTG+TGG | - | chr8_1:960906-960925 | Msa1171350:intron | 45.0% | |
| TCTTACACGTCTCTTGCAGA+TGG | - | chr8_1:961269-961288 | Msa1171350:intron | 45.0% | |
| GCATACATCAGAGCAGTCAA+AGG | + | chr8_1:961300-961319 | None:intergenic | 45.0% | |
| !!! | CGATGCACCGTTGTTTTTCA+AGG | - | chr8_1:961443-961462 | Msa1171350:intron | 45.0% |
| GATGACTGTGAAACTGAGAG+TGG | - | chr8_1:961558-961577 | Msa1171350:intron | 45.0% | |
| GATACAGACAAGTGTTCAGC+AGG | - | chr8_1:961735-961754 | Msa1171350:CDS | 45.0% | |
| AGACAAGTGTTCAGCAGGAT+CGG | - | chr8_1:961740-961759 | Msa1171350:CDS | 45.0% | |
| ! | GCTTGGCGTTGAACATGTAA+AGG | - | chr8_1:961825-961844 | Msa1171350:CDS | 45.0% |
| CATCCATTCCATTCCCTTCT+CGG | + | chr8_1:961986-962005 | None:intergenic | 45.0% | |
| GAGAAGGGAATGGAATGGAT+GGG | - | chr8_1:961985-962004 | Msa1171350:CDS | 45.0% | |
| GCGAGAGAGAATCTGATTCC+GGG | - | chr8_1:956643-956662 | Msa1171350:three_prime_UTR | 50.0% | |
| GAGAGAATCTGATTCCGGGT+CGG | - | chr8_1:956647-956666 | Msa1171350:three_prime_UTR | 50.0% | |
| AGAGAATCTGATTCCGGGTC+GGG | - | chr8_1:956648-956667 | Msa1171350:three_prime_UTR | 50.0% | |
| GGAGGTCTTCTTGGAACTTC+AGG | + | chr8_1:957184-957203 | None:intergenic | 50.0% | |
| AGGCATCTGTATGCACAAGG+AGG | - | chr8_1:959400-959419 | Msa1171350:intron | 50.0% | |
| AATGCATACACCCAGGCTGA+AGG | - | chr8_1:959518-959537 | Msa1171350:CDS | 50.0% | |
| ! | AACAGAGGAGTGGTACCGAA+TGG | - | chr8_1:959596-959615 | Msa1171350:intron | 50.0% |
| ATTGACGTGCATTGCTTGGC+AGG | - | chr8_1:959620-959639 | Msa1171350:intron | 50.0% | |
| AGAGGGTCCAATATCCCAGT+TGG | + | chr8_1:960148-960167 | None:intergenic | 50.0% | |
| GGTTTACTGCCCAATCTAGG+AGG | + | chr8_1:960252-960271 | None:intergenic | 50.0% | |
| TCTGAGCAACGTCTGCCATT+AGG | + | chr8_1:960273-960292 | None:intergenic | 50.0% | |
| AATGGCAGACGTTGCTCAGA+TGG | - | chr8_1:960273-960292 | Msa1171350:intron | 50.0% | |
| ! | GGGACAAGTACTGCTCTGAT+TGG | + | chr8_1:960861-960880 | None:intergenic | 50.0% |
| TGTCCCTAGATGTGCAGTCT+AGG | - | chr8_1:960875-960894 | Msa1171350:intron | 50.0% | |
| CGGAAATGATTACAGCGACG+AGG | - | chr8_1:961479-961498 | Msa1171350:intron | 50.0% | |
| CTGGTTGACAGTTGTCCTTG+CGG | - | chr8_1:961636-961655 | Msa1171350:intron | 50.0% | |
| ATTTGAGAGACAACGCCGCA+AGG | + | chr8_1:961654-961673 | None:intergenic | 50.0% | |
| AGGATCGGTGGAGAAGAACA+GGG | - | chr8_1:961755-961774 | Msa1171350:CDS | 50.0% | |
| ! | TATCTTGCTGTCTGGGGGAA+TGG | - | chr8_1:961861-961880 | Msa1171350:CDS | 50.0% |
| ! | ATCTTGCTGTCTGGGGGAAT+GGG | - | chr8_1:961862-961881 | Msa1171350:CDS | 50.0% |
| GATTGCTGATGTCGTCCTAG+TGG | - | chr8_1:961940-961959 | Msa1171350:CDS | 50.0% | |
| CGTTATGCAACGACTCCACT+AGG | + | chr8_1:961958-961977 | None:intergenic | 50.0% | |
| TGCATAACGTCCTTCCGAGA+AGG | - | chr8_1:961969-961988 | Msa1171350:CDS | 50.0% | |
| GCATAACGTCCTTCCGAGAA+GGG | - | chr8_1:961970-961989 | Msa1171350:CDS | 50.0% | |
| CATTCCATTCCCTTCTCGGA+AGG | + | chr8_1:961982-962001 | None:intergenic | 50.0% | |
| CTTCCGAGAAGGGAATGGAA+TGG | - | chr8_1:961980-961999 | Msa1171350:CDS | 50.0% | |
| CGAGAAGGGAATGGAATGGA+TGG | - | chr8_1:961984-962003 | Msa1171350:CDS | 50.0% | |
| ! | CTGTGTGCGTTGCCACATTT+TGG | - | chr8_1:962030-962049 | Msa1171350:CDS | 50.0% |
| TGATTCCGGGTCGGGTAAAG+CGG | - | chr8_1:956656-956675 | Msa1171350:three_prime_UTR | 55.0% | |
| CTGGCACTAGGAGGTCTTCT+TGG | + | chr8_1:957193-957212 | None:intergenic | 55.0% | |
| CAAGAAGACCTCCTAGTGCC+AGG | - | chr8_1:957191-957210 | Msa1171350:CDS | 55.0% | |
| AAGACCTCCTAGTGCCAGGT+TGG | - | chr8_1:957195-957214 | Msa1171350:CDS | 55.0% | |
| AGACCTCCTAGTGCCAGGTT+GGG | - | chr8_1:957196-957215 | Msa1171350:CDS | 55.0% | |
| AGAAAGCCCAACCTGGCACT+AGG | + | chr8_1:957205-957224 | None:intergenic | 55.0% | |
| GGACCCTTCATCACTGGTGT+TGG | - | chr8_1:959008-959027 | Msa1171350:intron | 55.0% | |
| TCACCTGCTCTGGCGAAAGA+GGG | + | chr8_1:960165-960184 | None:intergenic | 55.0% | |
| ATCACCTGCTCTGGCGAAAG+AGG | + | chr8_1:960166-960185 | None:intergenic | 55.0% | |
| AGAAGCCGCCCTCCTAGATT+GGG | - | chr8_1:960240-960259 | Msa1171350:intron | 55.0% | |
| TACTGCCCAATCTAGGAGGG+CGG | + | chr8_1:960248-960267 | None:intergenic | 55.0% | |
| ! | GCTTTGTTGTGAAGGCTCGG+CGG | + | chr8_1:961520-961539 | None:intergenic | 55.0% |
| CAAGTGTTCAGCAGGATCGG+TGG | - | chr8_1:961743-961762 | Msa1171350:CDS | 55.0% | |
| CAGGATCGGTGGAGAAGAAC+AGG | - | chr8_1:961754-961773 | Msa1171350:CDS | 55.0% | |
| GGATCGGTGGAGAAGAACAG+GGG | - | chr8_1:961756-961775 | Msa1171350:CDS | 55.0% | |
| ! | GATCCGAGTTGGCTGAAGCT+TGG | - | chr8_1:961808-961827 | Msa1171350:CDS | 55.0% |
| ACGCCAAGCTTCAGCCAACT+CGG | + | chr8_1:961814-961833 | None:intergenic | 55.0% | |
| ACGTCCTTCCGAGAAGGGAA+TGG | - | chr8_1:961975-961994 | Msa1171350:CDS | 55.0% | |
| GACAACACTGCTGCCCTACA+AGG | + | chr8_1:962290-962309 | None:intergenic | 55.0% | |
| GGTAACCGCTTTACCCGACC+CGG | + | chr8_1:956664-956683 | None:intergenic | 60.0% | |
| AAGCCCAACCTGGCACTAGG+AGG | + | chr8_1:957202-957221 | None:intergenic | 60.0% | |
| GTATGCACAAGGAGGCCTGC+AGG | - | chr8_1:959408-959427 | Msa1171350:intron | 60.0% | |
| TGGGACTGCATCACCTGCTC+TGG | + | chr8_1:960175-960194 | None:intergenic | 60.0% | |
| AGGAGGGCGGCTTCTGTTGA+AGG | + | chr8_1:960235-960254 | None:intergenic | 60.0% | |
| CAGAAGCCGCCCTCCTAGAT+TGG | - | chr8_1:960239-960258 | Msa1171350:intron | 60.0% | |
| TGCTGTCTGGGGGAATGGGA+TGG | - | chr8_1:961866-961885 | Msa1171350:CDS | 60.0% | |
| GGACCCTCTTTCGCCAGAGC+AGG | - | chr8_1:960159-960178 | Msa1171350:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 956540 | 962349 | 956540 | ID=Msa1171350;Name=Msa1171350 |
| chr8_1 | mRNA | 956540 | 962349 | 956540 | ID=Msa1171350-mRNA-1;Parent=Msa1171350;Name=Msa1171350-mRNA-1;_AED=0.05;_eAED=0.05;_QI=245|1|1|1|1|1|5|513|482 |
| chr8_1 | exon | 956540 | 957601 | 956540 | ID=Msa1171350-mRNA-1:exon:275;Parent=Msa1171350-mRNA-1 |
| chr8_1 | exon | 958532 | 958762 | 958532 | ID=Msa1171350-mRNA-1:exon:274;Parent=Msa1171350-mRNA-1 |
| chr8_1 | exon | 959237 | 959356 | 959237 | ID=Msa1171350-mRNA-1:exon:273;Parent=Msa1171350-mRNA-1 |
| chr8_1 | exon | 959460 | 959580 | 959460 | ID=Msa1171350-mRNA-1:exon:272;Parent=Msa1171350-mRNA-1 |
| chr8_1 | exon | 961677 | 962349 | 961677 | ID=Msa1171350-mRNA-1:exon:271;Parent=Msa1171350-mRNA-1 |
| chr8_1 | five_prime_UTR | 962105 | 962349 | 962105 | ID=Msa1171350-mRNA-1:five_prime_utr;Parent=Msa1171350-mRNA-1 |
| chr8_1 | CDS | 961677 | 962104 | 961677 | ID=Msa1171350-mRNA-1:cds;Parent=Msa1171350-mRNA-1 |
| chr8_1 | CDS | 959460 | 959580 | 959460 | ID=Msa1171350-mRNA-1:cds;Parent=Msa1171350-mRNA-1 |
| chr8_1 | CDS | 959237 | 959356 | 959237 | ID=Msa1171350-mRNA-1:cds;Parent=Msa1171350-mRNA-1 |
| chr8_1 | CDS | 958532 | 958762 | 958532 | ID=Msa1171350-mRNA-1:cds;Parent=Msa1171350-mRNA-1 |
| chr8_1 | CDS | 957053 | 957601 | 957053 | ID=Msa1171350-mRNA-1:cds;Parent=Msa1171350-mRNA-1 |
| chr8_1 | three_prime_UTR | 956540 | 957052 | 956540 | ID=Msa1171350-mRNA-1:three_prime_utr;Parent=Msa1171350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
