Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0712700 | XP_003611074.1 | 91.270 | 252 | 20 | 2 | 1 | 251 | 1 | 251 | 1.33e-157 | 447 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0712700 | G7KC16 | 91.270 | 252 | 20 | 2 | 1 | 251 | 1 | 251 | 6.38e-158 | 447 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0712700 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0712700 | Msa1349670 | 0.964606 | 1.541436e-123 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0712700 | MtrunA17_Chr5g0397361 | 91.270 | 252 | 20 | 2 | 1 | 251 | 1 | 251 | 1.23e-161 | 447 |
| Msa0712700 | MtrunA17_Chr8g0387241 | 49.505 | 202 | 69 | 5 | 65 | 240 | 97 | 291 | 3.82e-54 | 177 |
| Msa0712700 | MtrunA17_Chr2g0311591 | 54.545 | 88 | 37 | 1 | 148 | 232 | 143 | 230 | 1.87e-22 | 93.2 |
| Msa0712700 | MtrunA17_Chr2g0327621 | 41.739 | 115 | 45 | 2 | 129 | 221 | 90 | 204 | 1.04e-19 | 85.1 |
| Msa0712700 | MtrunA17_Chr1g0168401 | 47.917 | 96 | 41 | 2 | 141 | 236 | 292 | 378 | 1.09e-19 | 87.4 |
| Msa0712700 | MtrunA17_Chr1g0186171 | 51.948 | 77 | 37 | 0 | 139 | 215 | 283 | 359 | 5.44e-19 | 85.5 |
| Msa0712700 | MtrunA17_Chr1g0147111 | 48.276 | 87 | 38 | 2 | 138 | 220 | 194 | 277 | 5.44e-17 | 78.6 |
| Msa0712700 | MtrunA17_Chr4g0030421 | 53.125 | 64 | 30 | 0 | 158 | 221 | 21 | 84 | 6.51e-16 | 72.4 |
| Msa0712700 | MtrunA17_Chr3g0126721 | 35.075 | 134 | 71 | 3 | 104 | 222 | 148 | 280 | 2.63e-15 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0712700 | AT5G41380.1 | 48.370 | 184 | 73 | 6 | 58 | 221 | 83 | 264 | 2.57e-40 | 141 |
| Msa0712700 | AT1G63820.1 | 49.342 | 152 | 54 | 5 | 117 | 248 | 117 | 265 | 2.51e-35 | 128 |
| Msa0712700 | AT3G12890.1 | 51.546 | 97 | 44 | 2 | 154 | 250 | 121 | 214 | 1.17e-21 | 90.9 |
| Msa0712700 | AT1G04500.4 | 33.484 | 221 | 107 | 8 | 34 | 234 | 146 | 346 | 4.72e-20 | 88.6 |
| Msa0712700 | AT1G04500.1 | 33.484 | 221 | 107 | 8 | 34 | 234 | 146 | 346 | 4.72e-20 | 88.6 |
| Msa0712700 | AT1G04500.3 | 33.484 | 221 | 107 | 8 | 34 | 234 | 137 | 337 | 4.81e-20 | 88.6 |
| Msa0712700 | AT2G33350.2 | 66.667 | 57 | 19 | 0 | 163 | 219 | 301 | 357 | 4.99e-18 | 82.8 |
| Msa0712700 | AT2G33350.1 | 66.667 | 57 | 19 | 0 | 163 | 219 | 302 | 358 | 5.91e-18 | 82.8 |
| Msa0712700 | AT2G33350.4 | 66.667 | 57 | 19 | 0 | 163 | 219 | 290 | 346 | 6.13e-18 | 82.8 |
| Msa0712700 | AT2G33350.5 | 66.667 | 57 | 19 | 0 | 163 | 219 | 310 | 366 | 6.36e-18 | 82.8 |
| Msa0712700 | AT4G27900.1 | 48.315 | 89 | 37 | 3 | 138 | 222 | 178 | 261 | 3.92e-16 | 76.3 |
| Msa0712700 | AT4G27900.2 | 48.315 | 89 | 37 | 3 | 138 | 222 | 178 | 261 | 3.92e-16 | 76.3 |
| Msa0712700 | AT5G53420.1 | 44.318 | 88 | 47 | 2 | 129 | 216 | 177 | 262 | 2.39e-15 | 73.9 |
| Msa0712700 | AT5G53420.2 | 44.318 | 88 | 47 | 2 | 129 | 216 | 98 | 183 | 2.94e-15 | 72.0 |
| Msa0712700 | AT5G53420.5 | 44.318 | 88 | 47 | 2 | 129 | 216 | 98 | 183 | 2.94e-15 | 72.0 |
| Msa0712700 | AT5G53420.4 | 44.318 | 88 | 47 | 2 | 129 | 216 | 98 | 183 | 2.94e-15 | 72.0 |
| Msa0712700 | AT5G59990.1 | 43.103 | 116 | 56 | 3 | 136 | 243 | 119 | 232 | 4.39e-14 | 70.1 |
Find 51 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTCATGCCATTGGAAATT+TGG | 0.108434 | 5_1:-4508163 | None:intergenic |
| TGTTTGGGCTTGAATGTTTA+TGG | 0.196449 | 5_1:-4507850 | None:intergenic |
| ATTCATGCCATTGGAAATTT+GGG | 0.264246 | 5_1:-4508162 | None:intergenic |
| ATCATCATGAAGACGAGTTC+TGG | 0.270661 | 5_1:+4509024 | Msa0712700:CDS |
| CAAAGTAGGGCGTTACAATT+TGG | 0.279002 | 5_1:+4508510 | Msa0712700:CDS |
| GGATCATAAGAGACTTTGTT+TGG | 0.295719 | 5_1:-4507866 | None:intergenic |
| AGCTCCTCTGCATTAACTTT+TGG | 0.308354 | 5_1:-4508069 | None:intergenic |
| GGAAATTTCTCTACTTTGGA+TGG | 0.338370 | 5_1:+4507995 | Msa0712700:CDS |
| GAACTTCCTCCGGCTTCTCT+TGG | 0.364020 | 5_1:-4508566 | None:intergenic |
| GCTTGGAAATTTCTCTACTT+TGG | 0.370290 | 5_1:+4507991 | Msa0712700:CDS |
| GTGCAGTGCAGGAGATTTGC+AGG | 0.391803 | 5_1:+4508231 | Msa0712700:CDS |
| GAAGTTCAACAAGATTATTA+AGG | 0.398859 | 5_1:+4508582 | Msa0712700:CDS |
| GATTGTCGGCTAGTGTCTTT+CGG | 0.419573 | 5_1:-4508920 | None:intergenic |
| TAAGCTTCAGAAGGAAAATC+AGG | 0.424848 | 5_1:-4508118 | None:intergenic |
| ATTTAGGTTGATTTCATTGA+AGG | 0.428619 | 5_1:+4509163 | Msa0712700:intron |
| TAATCTTGTTGAACTTCCTC+CGG | 0.431668 | 5_1:-4508576 | None:intergenic |
| GGGAGTCCATCTGTGTGTTA+TGG | 0.434607 | 5_1:-4508141 | None:intergenic |
| GAAAACTGAGGAATGTCAAA+TGG | 0.438264 | 5_1:+4508027 | Msa0712700:CDS |
| GCACGCTCTTCTTATTTGTC+CGG | 0.440631 | 5_1:-4508212 | None:intergenic |
| TGTTGTTGTGATCTTAATAG+AGG | 0.449547 | 5_1:-4509201 | None:intergenic |
| GATCATAAGAGACTTTGTTT+GGG | 0.452048 | 5_1:-4507865 | None:intergenic |
| ATAAGAAGAGCGTGCAGTGC+AGG | 0.452210 | 5_1:+4508220 | Msa0712700:CDS |
| TCTTCTCCAACCAGTGAGCT+TGG | 0.454671 | 5_1:+4507974 | Msa0712700:CDS |
| ACGTATGCGTGTTCGATTGT+CGG | 0.459741 | 5_1:-4508934 | None:intergenic |
| GAAATTTCTCTACTTTGGAT+GGG | 0.461348 | 5_1:+4507996 | Msa0712700:CDS |
| GATGAAGTAAACTTCAAAGT+AGG | 0.477302 | 5_1:+4508496 | Msa0712700:CDS |
| TCATCATGAAGACGAGTTCT+GGG | 0.484075 | 5_1:+4509025 | Msa0712700:CDS |
| GATCAGAACATGGCAACACC+TGG | 0.484597 | 5_1:+4508463 | Msa0712700:intron |
| CTGTTTCAATGTAATTGAAA+GGG | 0.489672 | 5_1:-4507895 | None:intergenic |
| ACTGTTTCAATGTAATTGAA+AGG | 0.489675 | 5_1:-4507896 | None:intergenic |
| TTTAGGTTGATTTCATTGAA+GGG | 0.494868 | 5_1:+4509164 | Msa0712700:intron |
| GGGAGCTCAATTCATGCCAT+TGG | 0.496254 | 5_1:-4508171 | None:intergenic |
| GGCAACACCTGGGTCTCAAA+CGG | 0.500495 | 5_1:+4508474 | Msa0712700:CDS |
| GATATAGAGCCAAGAGAAGC+CGG | 0.504164 | 5_1:+4508557 | Msa0712700:CDS |
| ACTTCATCCGTTTGAGACCC+AGG | 0.512208 | 5_1:-4508481 | None:intergenic |
| AGAGAAATTTCCAAGCTCAC+TGG | 0.521246 | 5_1:-4507984 | None:intergenic |
| TTACATTGAAACAGTTCAAG+AGG | 0.525691 | 5_1:+4507904 | Msa0712700:CDS |
| CCCGAAAATAGTTTCTTCAC+CGG | 0.538362 | 5_1:+4508193 | Msa0712700:CDS |
| ATGAAGTAAACTTCAAAGTA+GGG | 0.543162 | 5_1:+4508497 | Msa0712700:CDS |
| AAAACTGAGGAATGTCAAAT+GGG | 0.562447 | 5_1:+4508028 | Msa0712700:CDS |
| AAATTTCCAAGCTCACTGGT+TGG | 0.575257 | 5_1:-4507980 | None:intergenic |
| ATGTAATTGAAAGGGTAATG+AGG | 0.586254 | 5_1:-4507887 | None:intergenic |
| AGCTTACCATAACACACAGA+TGG | 0.590460 | 5_1:+4508135 | Msa0712700:CDS |
| TTCATGCCATTGGAAATTTG+GGG | 0.622889 | 5_1:-4508161 | None:intergenic |
| TGGACTCCCCAAATTTCCAA+TGG | 0.637971 | 5_1:+4508155 | Msa0712700:CDS |
| GTGTTATGGTAAGCTTCAGA+AGG | 0.638279 | 5_1:-4508127 | None:intergenic |
| ATCAGAACATGGCAACACCT+GGG | 0.639682 | 5_1:+4508464 | Msa0712700:intron |
| GACAATCGAACACGCATACG+TGG | 0.645981 | 5_1:+4508936 | Msa0712700:CDS |
| TGGGTCTCGTTTGAAAACTG+AGG | 0.669045 | 5_1:+4508015 | Msa0712700:CDS |
| ACTACCAAAAGTTAATGCAG+AGG | 0.669632 | 5_1:+4508065 | Msa0712700:CDS |
| ATAGAGCCAAGAGAAGCCGG+AGG | 0.708071 | 5_1:+4508560 | Msa0712700:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTCATTTTTTAAATGTA+GGG | + | chr5_1:4508355-4508374 | Msa0712700:intron | 10.0% |
| !!! | TTTAATTTTATCTGTATTAA+AGG | + | chr5_1:4508427-4508446 | Msa0712700:intron | 10.0% |
| !!! | ATTTTCATTTTTTAAATGTA+GGG | + | chr5_1:4508355-4508374 | Msa0712700:intron | 10.0% |
| !!! | TTTAATTTTATCTGTATTAA+AGG | + | chr5_1:4508427-4508446 | Msa0712700:intron | 10.0% |
| !! | TTCAGATTAAAAAATGTATA+TGG | + | chr5_1:4508308-4508327 | Msa0712700:intron | 15.0% |
| !! | ATGATTAAATTAATACGTAT+CGG | - | chr5_1:4508337-4508356 | None:intergenic | 15.0% |
| !!! | CATTTTCATTTTTTAAATGT+AGG | + | chr5_1:4508354-4508373 | Msa0712700:intron | 15.0% |
| !! | ACTAGTAATAAAATAATTGA+AGG | + | chr5_1:4508793-4508812 | Msa0712700:intron | 15.0% |
| !! | ATTTAGAAACAAAAAATATG+TGG | - | chr5_1:4508850-4508869 | None:intergenic | 15.0% |
| !!! | ATTTTTTGTTTCTAAATATG+TGG | + | chr5_1:4508853-4508872 | Msa0712700:intron | 15.0% |
| !!! | TATTATTGAGGTTTTTATTT+AGG | + | chr5_1:4509147-4509166 | Msa0712700:intron | 15.0% |
| !! | TTCAGATTAAAAAATGTATA+TGG | + | chr5_1:4508308-4508327 | Msa0712700:intron | 15.0% |
| !! | ATGATTAAATTAATACGTAT+CGG | - | chr5_1:4508337-4508356 | None:intergenic | 15.0% |
| !!! | CATTTTCATTTTTTAAATGT+AGG | + | chr5_1:4508354-4508373 | Msa0712700:intron | 15.0% |
| !! | ACTAGTAATAAAATAATTGA+AGG | + | chr5_1:4508793-4508812 | Msa0712700:intron | 15.0% |
| !! | ATTTAGAAACAAAAAATATG+TGG | - | chr5_1:4508850-4508869 | None:intergenic | 15.0% |
| !!! | ATTTTTTGTTTCTAAATATG+TGG | + | chr5_1:4508853-4508872 | Msa0712700:intron | 15.0% |
| !!! | TATTATTGAGGTTTTTATTT+AGG | + | chr5_1:4509147-4509166 | Msa0712700:intron | 15.0% |
| !! | TCAAATAATAGACATAAACA+CGG | - | chr5_1:4508389-4508408 | None:intergenic | 20.0% |
| !! | TGTATATAACATTATAACAG+TGG | - | chr5_1:4508683-4508702 | None:intergenic | 20.0% |
| !!! | TCTTTTGTTGTTTTTAATTG+TGG | + | chr5_1:4508878-4508897 | Msa0712700:intron | 20.0% |
| !! | TCAAATAATAGACATAAACA+CGG | - | chr5_1:4508389-4508408 | None:intergenic | 20.0% |
| !! | TGTATATAACATTATAACAG+TGG | - | chr5_1:4508683-4508702 | None:intergenic | 20.0% |
| !!! | TCTTTTGTTGTTTTTAATTG+TGG | + | chr5_1:4508878-4508897 | Msa0712700:intron | 20.0% |
| ! | CTGTTTCAATGTAATTGAAA+GGG | - | chr5_1:4507898-4507917 | None:intergenic | 25.0% |
| ! | ACTGTTTCAATGTAATTGAA+AGG | - | chr5_1:4507899-4507918 | None:intergenic | 25.0% |
| ! | TGGATGCTCAAAAATATATA+TGG | - | chr5_1:4508285-4508304 | None:intergenic | 25.0% |
| !!! | ACATTTTTTAATCTGAAGTG+TGG | - | chr5_1:4508305-4508324 | None:intergenic | 25.0% |
| !! | GTCTATTATTTGATAGTAGA+TGG | + | chr5_1:4508396-4508415 | Msa0712700:intron | 25.0% |
| ! | ATGAAGTAAACTTCAAAGTA+GGG | + | chr5_1:4508497-4508516 | Msa0712700:CDS | 25.0% |
| ! | GAAGTTCAACAAGATTATTA+AGG | + | chr5_1:4508582-4508601 | Msa0712700:CDS | 25.0% |
| !!! | ACATTTTTTTTTACTTGCGA+GGG | - | chr5_1:4508719-4508738 | None:intergenic | 25.0% |
| !!! | AACATTTTTTTTTACTTGCG+AGG | - | chr5_1:4508720-4508739 | None:intergenic | 25.0% |
| !! | ATGTGGTGTTAATATTATTG+AGG | + | chr5_1:4509135-4509154 | Msa0712700:intron | 25.0% |
| !!! | ATTTAGGTTGATTTCATTGA+AGG | + | chr5_1:4509163-4509182 | Msa0712700:intron | 25.0% |
| !!! | TTTAGGTTGATTTCATTGAA+GGG | + | chr5_1:4509164-4509183 | Msa0712700:intron | 25.0% |
| ! | CTGTTTCAATGTAATTGAAA+GGG | - | chr5_1:4507898-4507917 | None:intergenic | 25.0% |
| ! | ACTGTTTCAATGTAATTGAA+AGG | - | chr5_1:4507899-4507918 | None:intergenic | 25.0% |
| ! | TGGATGCTCAAAAATATATA+TGG | - | chr5_1:4508285-4508304 | None:intergenic | 25.0% |
| !!! | ACATTTTTTAATCTGAAGTG+TGG | - | chr5_1:4508305-4508324 | None:intergenic | 25.0% |
| !! | GTCTATTATTTGATAGTAGA+TGG | + | chr5_1:4508396-4508415 | Msa0712700:intron | 25.0% |
| ! | ATGAAGTAAACTTCAAAGTA+GGG | + | chr5_1:4508497-4508516 | Msa0712700:CDS | 25.0% |
| ! | GAAGTTCAACAAGATTATTA+AGG | + | chr5_1:4508582-4508601 | Msa0712700:CDS | 25.0% |
| !!! | ACATTTTTTTTTACTTGCGA+GGG | - | chr5_1:4508719-4508738 | None:intergenic | 25.0% |
| !!! | AACATTTTTTTTTACTTGCG+AGG | - | chr5_1:4508720-4508739 | None:intergenic | 25.0% |
| !! | ATGTGGTGTTAATATTATTG+AGG | + | chr5_1:4509135-4509154 | Msa0712700:intron | 25.0% |
| !!! | ATTTAGGTTGATTTCATTGA+AGG | + | chr5_1:4509163-4509182 | Msa0712700:intron | 25.0% |
| !!! | TTTAGGTTGATTTCATTGAA+GGG | + | chr5_1:4509164-4509183 | Msa0712700:intron | 25.0% |
| ! | GATCATAAGAGACTTTGTTT+GGG | - | chr5_1:4507868-4507887 | None:intergenic | 30.0% |
| ATGTAATTGAAAGGGTAATG+AGG | - | chr5_1:4507890-4507909 | None:intergenic | 30.0% | |
| TTACATTGAAACAGTTCAAG+AGG | + | chr5_1:4507904-4507923 | Msa0712700:CDS | 30.0% | |
| AGAAAAAGAAAAGAAGGAAG+AGG | - | chr5_1:4507957-4507976 | None:intergenic | 30.0% | |
| TGGAGAAGAAAAAGAAAAGA+AGG | - | chr5_1:4507963-4507982 | None:intergenic | 30.0% | |
| GAAATTTCTCTACTTTGGAT+GGG | + | chr5_1:4507996-4508015 | Msa0712700:CDS | 30.0% | |
| AAAACTGAGGAATGTCAAAT+GGG | + | chr5_1:4508028-4508047 | Msa0712700:CDS | 30.0% | |
| ATTCATGCCATTGGAAATTT+GGG | - | chr5_1:4508165-4508184 | None:intergenic | 30.0% | |
| AATTCATGCCATTGGAAATT+TGG | - | chr5_1:4508166-4508185 | None:intergenic | 30.0% | |
| AATATATATGGTAAGCCACA+CGG | - | chr5_1:4508273-4508292 | None:intergenic | 30.0% | |
| GATGAAGTAAACTTCAAAGT+AGG | + | chr5_1:4508496-4508515 | Msa0712700:CDS | 30.0% | |
| !!! | TTTTCTGTTTTTGAACACAC+AGG | - | chr5_1:4509002-4509021 | None:intergenic | 30.0% |
| GTTTAATACTTGCATCAATG+TGG | + | chr5_1:4509118-4509137 | Msa0712700:intron | 30.0% | |
| ! | GATCATAAGAGACTTTGTTT+GGG | - | chr5_1:4507868-4507887 | None:intergenic | 30.0% |
| ATGTAATTGAAAGGGTAATG+AGG | - | chr5_1:4507890-4507909 | None:intergenic | 30.0% | |
| TTACATTGAAACAGTTCAAG+AGG | + | chr5_1:4507904-4507923 | Msa0712700:CDS | 30.0% | |
| AGAAAAAGAAAAGAAGGAAG+AGG | - | chr5_1:4507957-4507976 | None:intergenic | 30.0% | |
| TGGAGAAGAAAAAGAAAAGA+AGG | - | chr5_1:4507963-4507982 | None:intergenic | 30.0% | |
| GAAATTTCTCTACTTTGGAT+GGG | + | chr5_1:4507996-4508015 | Msa0712700:CDS | 30.0% | |
| AAAACTGAGGAATGTCAAAT+GGG | + | chr5_1:4508028-4508047 | Msa0712700:CDS | 30.0% | |
| ATTCATGCCATTGGAAATTT+GGG | - | chr5_1:4508165-4508184 | None:intergenic | 30.0% | |
| AATTCATGCCATTGGAAATT+TGG | - | chr5_1:4508166-4508185 | None:intergenic | 30.0% | |
| AATATATATGGTAAGCCACA+CGG | - | chr5_1:4508273-4508292 | None:intergenic | 30.0% | |
| GATGAAGTAAACTTCAAAGT+AGG | + | chr5_1:4508496-4508515 | Msa0712700:CDS | 30.0% | |
| !!! | TTTTCTGTTTTTGAACACAC+AGG | - | chr5_1:4509002-4509021 | None:intergenic | 30.0% |
| GTTTAATACTTGCATCAATG+TGG | + | chr5_1:4509118-4509137 | Msa0712700:intron | 30.0% | |
| TGTTTGGGCTTGAATGTTTA+TGG | - | chr5_1:4507853-4507872 | None:intergenic | 35.0% | |
| GGATCATAAGAGACTTTGTT+TGG | - | chr5_1:4507869-4507888 | None:intergenic | 35.0% | |
| GCTTGGAAATTTCTCTACTT+TGG | + | chr5_1:4507991-4508010 | Msa0712700:CDS | 35.0% | |
| GGAAATTTCTCTACTTTGGA+TGG | + | chr5_1:4507995-4508014 | Msa0712700:CDS | 35.0% | |
| GAAAACTGAGGAATGTCAAA+TGG | + | chr5_1:4508027-4508046 | Msa0712700:CDS | 35.0% | |
| !! | CTGCATTAACTTTTGGTAGT+AGG | - | chr5_1:4508065-4508084 | None:intergenic | 35.0% |
| ACTACCAAAAGTTAATGCAG+AGG | + | chr5_1:4508065-4508084 | Msa0712700:CDS | 35.0% | |
| TAAGCTTCAGAAGGAAAATC+AGG | - | chr5_1:4508121-4508140 | None:intergenic | 35.0% | |
| TTCATGCCATTGGAAATTTG+GGG | - | chr5_1:4508164-4508183 | None:intergenic | 35.0% | |
| ! | TCCGGTGAAGAAACTATTTT+CGG | - | chr5_1:4508197-4508216 | None:intergenic | 35.0% |
| TAAAATAACCTAACACCGTG+TGG | + | chr5_1:4508255-4508274 | Msa0712700:intron | 35.0% | |
| GCTGTTTATTGATCAGAACA+TGG | + | chr5_1:4508453-4508472 | Msa0712700:intron | 35.0% | |
| TAATCTTGTTGAACTTCCTC+CGG | - | chr5_1:4508579-4508598 | None:intergenic | 35.0% | |
| ! | GTTTTTGAACACACAGGTTT+TGG | - | chr5_1:4508996-4509015 | None:intergenic | 35.0% |
| TGTTTGGGCTTGAATGTTTA+TGG | - | chr5_1:4507853-4507872 | None:intergenic | 35.0% | |
| GGATCATAAGAGACTTTGTT+TGG | - | chr5_1:4507869-4507888 | None:intergenic | 35.0% | |
| GCTTGGAAATTTCTCTACTT+TGG | + | chr5_1:4507991-4508010 | Msa0712700:CDS | 35.0% | |
| GGAAATTTCTCTACTTTGGA+TGG | + | chr5_1:4507995-4508014 | Msa0712700:CDS | 35.0% | |
| GAAAACTGAGGAATGTCAAA+TGG | + | chr5_1:4508027-4508046 | Msa0712700:CDS | 35.0% | |
| !! | CTGCATTAACTTTTGGTAGT+AGG | - | chr5_1:4508065-4508084 | None:intergenic | 35.0% |
| ACTACCAAAAGTTAATGCAG+AGG | + | chr5_1:4508065-4508084 | Msa0712700:CDS | 35.0% | |
| TAAGCTTCAGAAGGAAAATC+AGG | - | chr5_1:4508121-4508140 | None:intergenic | 35.0% | |
| TTCATGCCATTGGAAATTTG+GGG | - | chr5_1:4508164-4508183 | None:intergenic | 35.0% | |
| ! | TCCGGTGAAGAAACTATTTT+CGG | - | chr5_1:4508197-4508216 | None:intergenic | 35.0% |
| TAAAATAACCTAACACCGTG+TGG | + | chr5_1:4508255-4508274 | Msa0712700:intron | 35.0% | |
| GCTGTTTATTGATCAGAACA+TGG | + | chr5_1:4508453-4508472 | Msa0712700:intron | 35.0% | |
| TAATCTTGTTGAACTTCCTC+CGG | - | chr5_1:4508579-4508598 | None:intergenic | 35.0% | |
| ! | GTTTTTGAACACACAGGTTT+TGG | - | chr5_1:4508996-4509015 | None:intergenic | 35.0% |
| AAATTTCCAAGCTCACTGGT+TGG | - | chr5_1:4507983-4508002 | None:intergenic | 40.0% | |
| AGAGAAATTTCCAAGCTCAC+TGG | - | chr5_1:4507987-4508006 | None:intergenic | 40.0% | |
| ! | AGCTCCTCTGCATTAACTTT+TGG | - | chr5_1:4508072-4508091 | None:intergenic | 40.0% |
| GTGTTATGGTAAGCTTCAGA+AGG | - | chr5_1:4508130-4508149 | None:intergenic | 40.0% | |
| AGCTTACCATAACACACAGA+TGG | + | chr5_1:4508135-4508154 | Msa0712700:CDS | 40.0% | |
| ! | GGTGAAGAAACTATTTTCGG+GGG | - | chr5_1:4508194-4508213 | None:intergenic | 40.0% |
| ! | CGGTGAAGAAACTATTTTCG+GGG | - | chr5_1:4508195-4508214 | None:intergenic | 40.0% |
| ! | CCGGTGAAGAAACTATTTTC+GGG | - | chr5_1:4508196-4508215 | None:intergenic | 40.0% |
| CCCGAAAATAGTTTCTTCAC+CGG | + | chr5_1:4508193-4508212 | Msa0712700:CDS | 40.0% | |
| ! | CAAAGTAGGGCGTTACAATT+TGG | + | chr5_1:4508510-4508529 | Msa0712700:CDS | 40.0% |
| ATGCTCCAACATTACCTGAA+AGG | + | chr5_1:4508637-4508656 | Msa0712700:intron | 40.0% | |
| TGCTCCAACATTACCTGAAA+GGG | + | chr5_1:4508638-4508657 | Msa0712700:intron | 40.0% | |
| ! | ATACCCCTTTCAGGTAATGT+TGG | - | chr5_1:4508645-4508664 | None:intergenic | 40.0% |
| AGTTCAGATATACCCCTTTC+AGG | - | chr5_1:4508654-4508673 | None:intergenic | 40.0% | |
| ATCATCATGAAGACGAGTTC+TGG | + | chr5_1:4509024-4509043 | Msa0712700:CDS | 40.0% | |
| TCATCATGAAGACGAGTTCT+GGG | + | chr5_1:4509025-4509044 | Msa0712700:CDS | 40.0% | |
| AAATTTCCAAGCTCACTGGT+TGG | - | chr5_1:4507983-4508002 | None:intergenic | 40.0% | |
| AGAGAAATTTCCAAGCTCAC+TGG | - | chr5_1:4507987-4508006 | None:intergenic | 40.0% | |
| ! | AGCTCCTCTGCATTAACTTT+TGG | - | chr5_1:4508072-4508091 | None:intergenic | 40.0% |
| GTGTTATGGTAAGCTTCAGA+AGG | - | chr5_1:4508130-4508149 | None:intergenic | 40.0% | |
| AGCTTACCATAACACACAGA+TGG | + | chr5_1:4508135-4508154 | Msa0712700:CDS | 40.0% | |
| ! | GGTGAAGAAACTATTTTCGG+GGG | - | chr5_1:4508194-4508213 | None:intergenic | 40.0% |
| ! | CGGTGAAGAAACTATTTTCG+GGG | - | chr5_1:4508195-4508214 | None:intergenic | 40.0% |
| ! | CCGGTGAAGAAACTATTTTC+GGG | - | chr5_1:4508196-4508215 | None:intergenic | 40.0% |
| CCCGAAAATAGTTTCTTCAC+CGG | + | chr5_1:4508193-4508212 | Msa0712700:CDS | 40.0% | |
| ! | CAAAGTAGGGCGTTACAATT+TGG | + | chr5_1:4508510-4508529 | Msa0712700:CDS | 40.0% |
| ATGCTCCAACATTACCTGAA+AGG | + | chr5_1:4508637-4508656 | Msa0712700:intron | 40.0% | |
| TGCTCCAACATTACCTGAAA+GGG | + | chr5_1:4508638-4508657 | Msa0712700:intron | 40.0% | |
| ! | ATACCCCTTTCAGGTAATGT+TGG | - | chr5_1:4508645-4508664 | None:intergenic | 40.0% |
| AGTTCAGATATACCCCTTTC+AGG | - | chr5_1:4508654-4508673 | None:intergenic | 40.0% | |
| ATCATCATGAAGACGAGTTC+TGG | + | chr5_1:4509024-4509043 | Msa0712700:CDS | 40.0% | |
| TCATCATGAAGACGAGTTCT+GGG | + | chr5_1:4509025-4509044 | Msa0712700:CDS | 40.0% | |
| TGGGTCTCGTTTGAAAACTG+AGG | + | chr5_1:4508015-4508034 | Msa0712700:CDS | 45.0% | |
| TGGACTCCCCAAATTTCCAA+TGG | + | chr5_1:4508155-4508174 | Msa0712700:CDS | 45.0% | |
| ! | GCACGCTCTTCTTATTTGTC+CGG | - | chr5_1:4508215-4508234 | None:intergenic | 45.0% |
| ATCAGAACATGGCAACACCT+GGG | + | chr5_1:4508464-4508483 | Msa0712700:intron | 45.0% | |
| GATATAGAGCCAAGAGAAGC+CGG | + | chr5_1:4508557-4508576 | Msa0712700:CDS | 45.0% | |
| GCTCCAACATTACCTGAAAG+GGG | + | chr5_1:4508639-4508658 | Msa0712700:intron | 45.0% | |
| TTTCGGCATGCATACTGTTG+TGG | - | chr5_1:4508906-4508925 | None:intergenic | 45.0% | |
| ! | GATTGTCGGCTAGTGTCTTT+CGG | - | chr5_1:4508923-4508942 | None:intergenic | 45.0% |
| ACGTATGCGTGTTCGATTGT+CGG | - | chr5_1:4508937-4508956 | None:intergenic | 45.0% | |
| !!! | CACAGGTTTTGGAATCTCGT+TGG | - | chr5_1:4508985-4509004 | None:intergenic | 45.0% |
| TGGGTCTCGTTTGAAAACTG+AGG | + | chr5_1:4508015-4508034 | Msa0712700:CDS | 45.0% | |
| TGGACTCCCCAAATTTCCAA+TGG | + | chr5_1:4508155-4508174 | Msa0712700:CDS | 45.0% | |
| ! | GCACGCTCTTCTTATTTGTC+CGG | - | chr5_1:4508215-4508234 | None:intergenic | 45.0% |
| ATCAGAACATGGCAACACCT+GGG | + | chr5_1:4508464-4508483 | Msa0712700:intron | 45.0% | |
| GATATAGAGCCAAGAGAAGC+CGG | + | chr5_1:4508557-4508576 | Msa0712700:CDS | 45.0% | |
| GCTCCAACATTACCTGAAAG+GGG | + | chr5_1:4508639-4508658 | Msa0712700:intron | 45.0% | |
| TTTCGGCATGCATACTGTTG+TGG | - | chr5_1:4508906-4508925 | None:intergenic | 45.0% | |
| ! | GATTGTCGGCTAGTGTCTTT+CGG | - | chr5_1:4508923-4508942 | None:intergenic | 45.0% |
| ACGTATGCGTGTTCGATTGT+CGG | - | chr5_1:4508937-4508956 | None:intergenic | 45.0% | |
| !!! | CACAGGTTTTGGAATCTCGT+TGG | - | chr5_1:4508985-4509004 | None:intergenic | 45.0% |
| TCTTCTCCAACCAGTGAGCT+TGG | + | chr5_1:4507974-4507993 | Msa0712700:CDS | 50.0% | |
| GGGAGTCCATCTGTGTGTTA+TGG | - | chr5_1:4508144-4508163 | None:intergenic | 50.0% | |
| GGGAGCTCAATTCATGCCAT+TGG | - | chr5_1:4508174-4508193 | None:intergenic | 50.0% | |
| ! | ATAAGAAGAGCGTGCAGTGC+AGG | + | chr5_1:4508220-4508239 | Msa0712700:CDS | 50.0% |
| ATGGTAAGCCACACGGTGTT+AGG | - | chr5_1:4508266-4508285 | None:intergenic | 50.0% | |
| GATCAGAACATGGCAACACC+TGG | + | chr5_1:4508463-4508482 | Msa0712700:intron | 50.0% | |
| ! | ACTTCATCCGTTTGAGACCC+AGG | - | chr5_1:4508484-4508503 | None:intergenic | 50.0% |
| GACAATCGAACACGCATACG+TGG | + | chr5_1:4508936-4508955 | Msa0712700:CDS | 50.0% | |
| TCTTCTCCAACCAGTGAGCT+TGG | + | chr5_1:4507974-4507993 | Msa0712700:CDS | 50.0% | |
| GGGAGTCCATCTGTGTGTTA+TGG | - | chr5_1:4508144-4508163 | None:intergenic | 50.0% | |
| GGGAGCTCAATTCATGCCAT+TGG | - | chr5_1:4508174-4508193 | None:intergenic | 50.0% | |
| ! | ATAAGAAGAGCGTGCAGTGC+AGG | + | chr5_1:4508220-4508239 | Msa0712700:CDS | 50.0% |
| ATGGTAAGCCACACGGTGTT+AGG | - | chr5_1:4508266-4508285 | None:intergenic | 50.0% | |
| GATCAGAACATGGCAACACC+TGG | + | chr5_1:4508463-4508482 | Msa0712700:intron | 50.0% | |
| ! | ACTTCATCCGTTTGAGACCC+AGG | - | chr5_1:4508484-4508503 | None:intergenic | 50.0% |
| GACAATCGAACACGCATACG+TGG | + | chr5_1:4508936-4508955 | Msa0712700:CDS | 50.0% | |
| GTGCAGTGCAGGAGATTTGC+AGG | + | chr5_1:4508231-4508250 | Msa0712700:CDS | 55.0% | |
| GGCAACACCTGGGTCTCAAA+CGG | + | chr5_1:4508474-4508493 | Msa0712700:CDS | 55.0% | |
| ATAGAGCCAAGAGAAGCCGG+AGG | + | chr5_1:4508560-4508579 | Msa0712700:CDS | 55.0% | |
| GAACTTCCTCCGGCTTCTCT+TGG | - | chr5_1:4508569-4508588 | None:intergenic | 55.0% | |
| GTGCAGTGCAGGAGATTTGC+AGG | + | chr5_1:4508231-4508250 | Msa0712700:CDS | 55.0% | |
| GGCAACACCTGGGTCTCAAA+CGG | + | chr5_1:4508474-4508493 | Msa0712700:CDS | 55.0% | |
| ATAGAGCCAAGAGAAGCCGG+AGG | + | chr5_1:4508560-4508579 | Msa0712700:CDS | 55.0% | |
| GAACTTCCTCCGGCTTCTCT+TGG | - | chr5_1:4508569-4508588 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 4507809 | 4509210 | 4507809 | ID=Msa0712700;Name=Msa0712700 |
| chr5_1 | mRNA | 4507809 | 4509210 | 4507809 | ID=Msa0712700-mRNA-1;Parent=Msa0712700;Name=Msa0712700-mRNA-1;_AED=0.03;_eAED=0.04;_QI=0|0|0|1|1|1|4|0|251 |
| chr5_1 | exon | 4507809 | 4508252 | 4507809 | ID=Msa0712700-mRNA-1:exon:1873;Parent=Msa0712700-mRNA-1 |
| chr5_1 | exon | 4508469 | 4508603 | 4508469 | ID=Msa0712700-mRNA-1:exon:1874;Parent=Msa0712700-mRNA-1 |
| chr5_1 | exon | 4508912 | 4509046 | 4508912 | ID=Msa0712700-mRNA-1:exon:1875;Parent=Msa0712700-mRNA-1 |
| chr5_1 | exon | 4509169 | 4509210 | 4509169 | ID=Msa0712700-mRNA-1:exon:1876;Parent=Msa0712700-mRNA-1 |
| chr5_1 | CDS | 4507809 | 4508252 | 4507809 | ID=Msa0712700-mRNA-1:cds;Parent=Msa0712700-mRNA-1 |
| chr5_1 | CDS | 4508469 | 4508603 | 4508469 | ID=Msa0712700-mRNA-1:cds;Parent=Msa0712700-mRNA-1 |
| chr5_1 | CDS | 4508912 | 4509046 | 4508912 | ID=Msa0712700-mRNA-1:cds;Parent=Msa0712700-mRNA-1 |
| chr5_1 | CDS | 4509169 | 4509210 | 4509169 | ID=Msa0712700-mRNA-1:cds;Parent=Msa0712700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
