Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1349670 | XP_003611074.1 | 90.873 | 252 | 21 | 2 | 1 | 251 | 1 | 251 | 1.05e-156 | 445 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1349670 | G7KC16 | 90.873 | 252 | 21 | 2 | 1 | 251 | 1 | 251 | 5.01e-157 | 445 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1349670 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0712700 | Msa1349670 | 0.964606 | 1.541436e-123 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1349670 | MtrunA17_Chr5g0397361 | 90.873 | 252 | 21 | 2 | 1 | 251 | 1 | 251 | 9.65e-161 | 445 |
| Msa1349670 | MtrunA17_Chr8g0387241 | 49.010 | 202 | 70 | 5 | 65 | 240 | 97 | 291 | 2.23e-53 | 175 |
| Msa1349670 | MtrunA17_Chr2g0311591 | 54.545 | 88 | 37 | 1 | 148 | 232 | 143 | 230 | 2.39e-22 | 92.8 |
| Msa1349670 | MtrunA17_Chr1g0168401 | 49.425 | 87 | 39 | 1 | 150 | 236 | 297 | 378 | 3.97e-19 | 85.9 |
| Msa1349670 | MtrunA17_Chr2g0327621 | 40.870 | 115 | 46 | 2 | 129 | 221 | 90 | 204 | 5.32e-19 | 83.2 |
| Msa1349670 | MtrunA17_Chr1g0186171 | 55.556 | 72 | 32 | 0 | 144 | 215 | 288 | 359 | 6.23e-19 | 85.1 |
| Msa1349670 | MtrunA17_Chr1g0147111 | 47.126 | 87 | 39 | 2 | 138 | 220 | 194 | 277 | 2.71e-16 | 76.3 |
| Msa1349670 | MtrunA17_Chr4g0030421 | 53.125 | 64 | 30 | 0 | 158 | 221 | 21 | 84 | 7.22e-16 | 72.0 |
| Msa1349670 | MtrunA17_Chr3g0126721 | 34.328 | 134 | 72 | 3 | 104 | 222 | 148 | 280 | 1.31e-14 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1349670 | AT5G41380.1 | 47.826 | 184 | 74 | 6 | 58 | 221 | 83 | 264 | 1.44e-39 | 139 |
| Msa1349670 | AT1G63820.1 | 48.684 | 152 | 55 | 5 | 117 | 248 | 117 | 265 | 1.45e-34 | 125 |
| Msa1349670 | AT3G12890.1 | 51.546 | 97 | 44 | 2 | 154 | 250 | 121 | 214 | 1.36e-21 | 90.9 |
| Msa1349670 | AT1G04500.3 | 33.484 | 221 | 107 | 8 | 34 | 234 | 137 | 337 | 5.36e-20 | 88.2 |
| Msa1349670 | AT1G04500.4 | 33.484 | 221 | 107 | 8 | 34 | 234 | 146 | 346 | 6.22e-20 | 88.2 |
| Msa1349670 | AT1G04500.1 | 33.484 | 221 | 107 | 8 | 34 | 234 | 146 | 346 | 6.22e-20 | 88.2 |
| Msa1349670 | AT2G33350.2 | 66.667 | 57 | 19 | 0 | 163 | 219 | 301 | 357 | 6.29e-18 | 82.8 |
| Msa1349670 | AT2G33350.1 | 66.667 | 57 | 19 | 0 | 163 | 219 | 302 | 358 | 6.70e-18 | 82.8 |
| Msa1349670 | AT2G33350.4 | 66.667 | 57 | 19 | 0 | 163 | 219 | 290 | 346 | 7.44e-18 | 82.4 |
| Msa1349670 | AT2G33350.5 | 66.667 | 57 | 19 | 0 | 163 | 219 | 310 | 366 | 7.79e-18 | 82.4 |
| Msa1349670 | AT4G27900.1 | 47.191 | 89 | 38 | 3 | 138 | 222 | 178 | 261 | 2.28e-15 | 73.9 |
| Msa1349670 | AT4G27900.2 | 47.191 | 89 | 38 | 3 | 138 | 222 | 178 | 261 | 2.28e-15 | 73.9 |
| Msa1349670 | AT5G53420.1 | 43.182 | 88 | 48 | 2 | 129 | 216 | 177 | 262 | 1.43e-14 | 71.6 |
| Msa1349670 | AT5G53420.2 | 43.182 | 88 | 48 | 2 | 129 | 216 | 98 | 183 | 2.00e-14 | 70.1 |
| Msa1349670 | AT5G53420.5 | 43.182 | 88 | 48 | 2 | 129 | 216 | 98 | 183 | 2.00e-14 | 70.1 |
| Msa1349670 | AT5G53420.4 | 43.182 | 88 | 48 | 2 | 129 | 216 | 98 | 183 | 2.00e-14 | 70.1 |
| Msa1349670 | AT5G59990.1 | 42.241 | 116 | 57 | 3 | 136 | 243 | 119 | 232 | 2.03e-13 | 68.2 |
Find 55 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTCATGCCATTGGAAATT+TGG | 0.108434 | tig0010967:-87519 | None:intergenic |
| TGTTTGGGCTTGAATGTTTA+TGG | 0.196449 | tig0010967:-87206 | None:intergenic |
| ATTCATGCCATTGGAAATTT+GGG | 0.264246 | tig0010967:-87518 | None:intergenic |
| ATCATCATGAAGACGAGTTC+TGG | 0.270661 | tig0010967:+88365 | Msa1349670:CDS |
| CAAAGTAGGGCGTTACAATT+TGG | 0.279002 | tig0010967:+87864 | Msa1349670:CDS |
| GGATCATAAGAGACTTTGTT+TGG | 0.295719 | tig0010967:-87222 | None:intergenic |
| AGCTCCTCTGCATTAACTTT+TGG | 0.308354 | tig0010967:-87425 | None:intergenic |
| GGAAATTTCTCTACTTTGGA+TGG | 0.338370 | tig0010967:+87351 | Msa1349670:CDS |
| GAACTTCCTCCGGCTTCTCT+TGG | 0.364020 | tig0010967:-87920 | None:intergenic |
| GCTTGGAAATTTCTCTACTT+TGG | 0.370290 | tig0010967:+87347 | Msa1349670:CDS |
| GTGCAGGGCAGGAGATTTGC+AGG | 0.386511 | tig0010967:+87587 | Msa1349670:CDS |
| GAAGTTCAACAAGATTATTA+AGG | 0.398859 | tig0010967:+87936 | Msa1349670:CDS |
| GCACGCCCTTCTTATTTGTC+CGG | 0.412364 | tig0010967:-87568 | None:intergenic |
| GACAAATAAGAAGGGCGTGC+AGG | 0.414492 | tig0010967:+87571 | Msa1349670:CDS |
| GATTGTCGGCTAGTGTCTTT+CGG | 0.419573 | tig0010967:-88261 | None:intergenic |
| TAAGCTTCAGAAGGAAAATC+AGG | 0.424848 | tig0010967:-87474 | None:intergenic |
| ATTTAGGTTGATTTCATTGA+AGG | 0.428619 | tig0010967:+88504 | Msa1349670:intron |
| TAATCTTGTTGAACTTCCTC+CGG | 0.431668 | tig0010967:-87930 | None:intergenic |
| GGGAGTCCATCTGTGTGTTA+TGG | 0.434607 | tig0010967:-87497 | None:intergenic |
| GAAAACTGAGGAATGTCAAA+TGG | 0.438264 | tig0010967:+87383 | Msa1349670:CDS |
| TGTTGTTGTGATCTTAATAG+AGG | 0.449547 | tig0010967:-88542 | None:intergenic |
| GATCATAAGAGACTTTGTTT+GGG | 0.452048 | tig0010967:-87221 | None:intergenic |
| TCTTCTCCAACCAGTGAGCT+TGG | 0.454671 | tig0010967:+87330 | Msa1349670:CDS |
| ACGTATGCGTGTTCGATTGT+CGG | 0.459741 | tig0010967:-88275 | None:intergenic |
| GAAATTTCTCTACTTTGGAT+GGG | 0.461348 | tig0010967:+87352 | Msa1349670:CDS |
| ATAAGAAGGGCGTGCAGGGC+AGG | 0.462306 | tig0010967:+87576 | Msa1349670:CDS |
| GATGAAGTAAACTTCAAAGT+AGG | 0.477302 | tig0010967:+87850 | Msa1349670:CDS |
| TCATCATGAAGACGAGTTCT+GGG | 0.484075 | tig0010967:+88366 | Msa1349670:CDS |
| GATCAGAACATGGCAACACC+TGG | 0.484597 | tig0010967:+87817 | Msa1349670:intron |
| CTGTTTCAATGTAATTGAAA+GGG | 0.489672 | tig0010967:-87251 | None:intergenic |
| ACTGTTTCAATGTAATTGAA+AGG | 0.489675 | tig0010967:-87252 | None:intergenic |
| TTTAGGTTGATTTCATTGAA+GGG | 0.494868 | tig0010967:+88505 | Msa1349670:intron |
| GGGAGCTCAATTCATGCCAT+TGG | 0.496254 | tig0010967:-87527 | None:intergenic |
| GGCAACACCTGGGTCTCAAA+CGG | 0.500495 | tig0010967:+87828 | Msa1349670:CDS |
| GATATAGAGCCAAGAGAAGC+CGG | 0.504164 | tig0010967:+87911 | Msa1349670:CDS |
| ACTTCATCCGTTTGAGACCC+AGG | 0.512208 | tig0010967:-87835 | None:intergenic |
| TCTTCACCGGACAAATAAGA+AGG | 0.514231 | tig0010967:+87562 | Msa1349670:CDS |
| AGAGAAATTTCCAAGCTCAC+TGG | 0.521246 | tig0010967:-87340 | None:intergenic |
| ACAAATAAGAAGGGCGTGCA+GGG | 0.523958 | tig0010967:+87572 | Msa1349670:CDS |
| TTACATTGAAACAGTTCAAG+AGG | 0.525691 | tig0010967:+87260 | Msa1349670:CDS |
| CCCGAAAATAGTTTCTTCAC+CGG | 0.538362 | tig0010967:+87549 | Msa1349670:CDS |
| ATGAAGTAAACTTCAAAGTA+GGG | 0.543162 | tig0010967:+87851 | Msa1349670:CDS |
| AAAACTGAGGAATGTCAAAT+GGG | 0.562447 | tig0010967:+87384 | Msa1349670:CDS |
| AAATTTCCAAGCTCACTGGT+TGG | 0.575257 | tig0010967:-87336 | None:intergenic |
| ATGTAATTGAAAGGGTAATG+AGG | 0.586254 | tig0010967:-87243 | None:intergenic |
| AGCTTACCATAACACACAGA+TGG | 0.590460 | tig0010967:+87491 | Msa1349670:CDS |
| TTCATGCCATTGGAAATTTG+GGG | 0.622889 | tig0010967:-87517 | None:intergenic |
| CTTCACCGGACAAATAAGAA+GGG | 0.624611 | tig0010967:+87563 | Msa1349670:CDS |
| TGGACTCCCCAAATTTCCAA+TGG | 0.637971 | tig0010967:+87511 | Msa1349670:CDS |
| GTGTTATGGTAAGCTTCAGA+AGG | 0.638279 | tig0010967:-87483 | None:intergenic |
| ATCAGAACATGGCAACACCT+GGG | 0.639682 | tig0010967:+87818 | Msa1349670:intron |
| GACAATCGAACACGCATACG+TGG | 0.645981 | tig0010967:+88277 | Msa1349670:CDS |
| TGGGTCTCGTTTGAAAACTG+AGG | 0.669045 | tig0010967:+87371 | Msa1349670:CDS |
| ACTACCAAAAGTTAATGCAG+AGG | 0.669632 | tig0010967:+87421 | Msa1349670:CDS |
| ATAGAGCCAAGAGAAGCCGG+AGG | 0.708071 | tig0010967:+87914 | Msa1349670:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTCATTTTTTAAATGTA+GGG | + | tig0010967:87709-87728 | Msa1349670:intron | 10.0% |
| !!! | TTTAATTTTATCTGTATTAA+AGG | + | tig0010967:87781-87800 | Msa1349670:intron | 10.0% |
| !!! | ATTTTCATTTTTTAAATGTA+GGG | + | tig0010967:87709-87728 | Msa1349670:intron | 10.0% |
| !!! | TTTAATTTTATCTGTATTAA+AGG | + | tig0010967:87781-87800 | Msa1349670:intron | 10.0% |
| !! | TTCAGATTAAAAAATGTATA+TGG | + | tig0010967:87662-87681 | Msa1349670:intron | 15.0% |
| !! | ATGATTAAATTAATACGTAT+CGG | - | tig0010967:87691-87710 | None:intergenic | 15.0% |
| !!! | CATTTTCATTTTTTAAATGT+AGG | + | tig0010967:87708-87727 | Msa1349670:intron | 15.0% |
| !! | ATTTAGAAACAAAAAATATG+TGG | - | tig0010967:88191-88210 | None:intergenic | 15.0% |
| !!! | ATTTTTTGTTTCTAAATATG+TGG | + | tig0010967:88194-88213 | Msa1349670:intron | 15.0% |
| !!! | TATTATTGAGGTTTTTATTT+AGG | + | tig0010967:88488-88507 | Msa1349670:intron | 15.0% |
| !! | TTCAGATTAAAAAATGTATA+TGG | + | tig0010967:87662-87681 | Msa1349670:intron | 15.0% |
| !! | ATGATTAAATTAATACGTAT+CGG | - | tig0010967:87691-87710 | None:intergenic | 15.0% |
| !!! | CATTTTCATTTTTTAAATGT+AGG | + | tig0010967:87708-87727 | Msa1349670:intron | 15.0% |
| !! | ATTTAGAAACAAAAAATATG+TGG | - | tig0010967:88191-88210 | None:intergenic | 15.0% |
| !!! | ATTTTTTGTTTCTAAATATG+TGG | + | tig0010967:88194-88213 | Msa1349670:intron | 15.0% |
| !!! | TATTATTGAGGTTTTTATTT+AGG | + | tig0010967:88488-88507 | Msa1349670:intron | 15.0% |
| !! | TCAAATAATAGACATAAACA+CGG | - | tig0010967:87743-87762 | None:intergenic | 20.0% |
| !!! | ATTTTTTTTTTTACTTCCGA+GGG | - | tig0010967:88063-88082 | None:intergenic | 20.0% |
| !! | ACTTTACTAGTAATAATTGA+AGG | + | tig0010967:88134-88153 | Msa1349670:intron | 20.0% |
| !!! | TCTTTTGTTGTTTTTAATTG+TGG | + | tig0010967:88219-88238 | Msa1349670:intron | 20.0% |
| !! | TCAAATAATAGACATAAACA+CGG | - | tig0010967:87743-87762 | None:intergenic | 20.0% |
| !!! | ATTTTTTTTTTTACTTCCGA+GGG | - | tig0010967:88063-88082 | None:intergenic | 20.0% |
| !! | ACTTTACTAGTAATAATTGA+AGG | + | tig0010967:88134-88153 | Msa1349670:intron | 20.0% |
| !!! | TCTTTTGTTGTTTTTAATTG+TGG | + | tig0010967:88219-88238 | Msa1349670:intron | 20.0% |
| ! | CTGTTTCAATGTAATTGAAA+GGG | - | tig0010967:87254-87273 | None:intergenic | 25.0% |
| ! | ACTGTTTCAATGTAATTGAA+AGG | - | tig0010967:87255-87274 | None:intergenic | 25.0% |
| ! | AAAATATATATGGTAAGCCA+CGG | - | tig0010967:87629-87648 | None:intergenic | 25.0% |
| ! | TGGATGCTCAAAAATATATA+TGG | - | tig0010967:87639-87658 | None:intergenic | 25.0% |
| !!! | ACATTTTTTAATCTGAAGTG+TGG | - | tig0010967:87659-87678 | None:intergenic | 25.0% |
| !! | GTCTATTATTTGATAGTAGA+TGG | + | tig0010967:87750-87769 | Msa1349670:intron | 25.0% |
| ! | ATGAAGTAAACTTCAAAGTA+GGG | + | tig0010967:87851-87870 | Msa1349670:CDS | 25.0% |
| ! | GAAGTTCAACAAGATTATTA+AGG | + | tig0010967:87936-87955 | Msa1349670:CDS | 25.0% |
| !!! | CATTTTTTTTTTTACTTCCG+AGG | - | tig0010967:88064-88083 | None:intergenic | 25.0% |
| !! | ATGTGGTGTTAATATTATTG+AGG | + | tig0010967:88476-88495 | Msa1349670:intron | 25.0% |
| !!! | ATTTAGGTTGATTTCATTGA+AGG | + | tig0010967:88504-88523 | Msa1349670:intron | 25.0% |
| !!! | TTTAGGTTGATTTCATTGAA+GGG | + | tig0010967:88505-88524 | Msa1349670:intron | 25.0% |
| ! | CTGTTTCAATGTAATTGAAA+GGG | - | tig0010967:87254-87273 | None:intergenic | 25.0% |
| ! | ACTGTTTCAATGTAATTGAA+AGG | - | tig0010967:87255-87274 | None:intergenic | 25.0% |
| ! | AAAATATATATGGTAAGCCA+CGG | - | tig0010967:87629-87648 | None:intergenic | 25.0% |
| ! | TGGATGCTCAAAAATATATA+TGG | - | tig0010967:87639-87658 | None:intergenic | 25.0% |
| !!! | ACATTTTTTAATCTGAAGTG+TGG | - | tig0010967:87659-87678 | None:intergenic | 25.0% |
| !! | GTCTATTATTTGATAGTAGA+TGG | + | tig0010967:87750-87769 | Msa1349670:intron | 25.0% |
| ! | ATGAAGTAAACTTCAAAGTA+GGG | + | tig0010967:87851-87870 | Msa1349670:CDS | 25.0% |
| ! | GAAGTTCAACAAGATTATTA+AGG | + | tig0010967:87936-87955 | Msa1349670:CDS | 25.0% |
| !!! | CATTTTTTTTTTTACTTCCG+AGG | - | tig0010967:88064-88083 | None:intergenic | 25.0% |
| !! | ATGTGGTGTTAATATTATTG+AGG | + | tig0010967:88476-88495 | Msa1349670:intron | 25.0% |
| !!! | ATTTAGGTTGATTTCATTGA+AGG | + | tig0010967:88504-88523 | Msa1349670:intron | 25.0% |
| !!! | TTTAGGTTGATTTCATTGAA+GGG | + | tig0010967:88505-88524 | Msa1349670:intron | 25.0% |
| ! | GATCATAAGAGACTTTGTTT+GGG | - | tig0010967:87224-87243 | None:intergenic | 30.0% |
| ATGTAATTGAAAGGGTAATG+AGG | - | tig0010967:87246-87265 | None:intergenic | 30.0% | |
| TTACATTGAAACAGTTCAAG+AGG | + | tig0010967:87260-87279 | Msa1349670:CDS | 30.0% | |
| AGAAAAAGAAAAGAAGGAAG+AGG | - | tig0010967:87313-87332 | None:intergenic | 30.0% | |
| TGGAGAAGAAAAAGAAAAGA+AGG | - | tig0010967:87319-87338 | None:intergenic | 30.0% | |
| GAAATTTCTCTACTTTGGAT+GGG | + | tig0010967:87352-87371 | Msa1349670:CDS | 30.0% | |
| AAAACTGAGGAATGTCAAAT+GGG | + | tig0010967:87384-87403 | Msa1349670:CDS | 30.0% | |
| ATTCATGCCATTGGAAATTT+GGG | - | tig0010967:87521-87540 | None:intergenic | 30.0% | |
| AATTCATGCCATTGGAAATT+TGG | - | tig0010967:87522-87541 | None:intergenic | 30.0% | |
| GATGAAGTAAACTTCAAAGT+AGG | + | tig0010967:87850-87869 | Msa1349670:CDS | 30.0% | |
| !!! | TTTTCTGTTTTTGAACACAC+AGG | - | tig0010967:88343-88362 | None:intergenic | 30.0% |
| GTTTAATACTTGCATCAATG+TGG | + | tig0010967:88459-88478 | Msa1349670:intron | 30.0% | |
| ! | GATCATAAGAGACTTTGTTT+GGG | - | tig0010967:87224-87243 | None:intergenic | 30.0% |
| ATGTAATTGAAAGGGTAATG+AGG | - | tig0010967:87246-87265 | None:intergenic | 30.0% | |
| TTACATTGAAACAGTTCAAG+AGG | + | tig0010967:87260-87279 | Msa1349670:CDS | 30.0% | |
| AGAAAAAGAAAAGAAGGAAG+AGG | - | tig0010967:87313-87332 | None:intergenic | 30.0% | |
| TGGAGAAGAAAAAGAAAAGA+AGG | - | tig0010967:87319-87338 | None:intergenic | 30.0% | |
| GAAATTTCTCTACTTTGGAT+GGG | + | tig0010967:87352-87371 | Msa1349670:CDS | 30.0% | |
| AAAACTGAGGAATGTCAAAT+GGG | + | tig0010967:87384-87403 | Msa1349670:CDS | 30.0% | |
| ATTCATGCCATTGGAAATTT+GGG | - | tig0010967:87521-87540 | None:intergenic | 30.0% | |
| AATTCATGCCATTGGAAATT+TGG | - | tig0010967:87522-87541 | None:intergenic | 30.0% | |
| GATGAAGTAAACTTCAAAGT+AGG | + | tig0010967:87850-87869 | Msa1349670:CDS | 30.0% | |
| !!! | TTTTCTGTTTTTGAACACAC+AGG | - | tig0010967:88343-88362 | None:intergenic | 30.0% |
| GTTTAATACTTGCATCAATG+TGG | + | tig0010967:88459-88478 | Msa1349670:intron | 30.0% | |
| TGTTTGGGCTTGAATGTTTA+TGG | - | tig0010967:87209-87228 | None:intergenic | 35.0% | |
| GGATCATAAGAGACTTTGTT+TGG | - | tig0010967:87225-87244 | None:intergenic | 35.0% | |
| GCTTGGAAATTTCTCTACTT+TGG | + | tig0010967:87347-87366 | Msa1349670:CDS | 35.0% | |
| GGAAATTTCTCTACTTTGGA+TGG | + | tig0010967:87351-87370 | Msa1349670:CDS | 35.0% | |
| GAAAACTGAGGAATGTCAAA+TGG | + | tig0010967:87383-87402 | Msa1349670:CDS | 35.0% | |
| !! | CTGCATTAACTTTTGGTAGT+AGG | - | tig0010967:87421-87440 | None:intergenic | 35.0% |
| ACTACCAAAAGTTAATGCAG+AGG | + | tig0010967:87421-87440 | Msa1349670:CDS | 35.0% | |
| TAAGCTTCAGAAGGAAAATC+AGG | - | tig0010967:87477-87496 | None:intergenic | 35.0% | |
| TTCATGCCATTGGAAATTTG+GGG | - | tig0010967:87520-87539 | None:intergenic | 35.0% | |
| ! | TCCGGTGAAGAAACTATTTT+CGG | - | tig0010967:87553-87572 | None:intergenic | 35.0% |
| GTTAAAATAACCTAACACCG+TGG | + | tig0010967:87609-87628 | Msa1349670:intron | 35.0% | |
| GCTGTTTATTGATCAGAACA+TGG | + | tig0010967:87807-87826 | Msa1349670:intron | 35.0% | |
| TAATCTTGTTGAACTTCCTC+CGG | - | tig0010967:87933-87952 | None:intergenic | 35.0% | |
| ACAAAAGAAAGTTGTTCCCT+CGG | + | tig0010967:88044-88063 | Msa1349670:intron | 35.0% | |
| ! | GTTTTTGAACACACAGGTTT+TGG | - | tig0010967:88337-88356 | None:intergenic | 35.0% |
| TGTTTGGGCTTGAATGTTTA+TGG | - | tig0010967:87209-87228 | None:intergenic | 35.0% | |
| GGATCATAAGAGACTTTGTT+TGG | - | tig0010967:87225-87244 | None:intergenic | 35.0% | |
| GCTTGGAAATTTCTCTACTT+TGG | + | tig0010967:87347-87366 | Msa1349670:CDS | 35.0% | |
| GGAAATTTCTCTACTTTGGA+TGG | + | tig0010967:87351-87370 | Msa1349670:CDS | 35.0% | |
| GAAAACTGAGGAATGTCAAA+TGG | + | tig0010967:87383-87402 | Msa1349670:CDS | 35.0% | |
| !! | CTGCATTAACTTTTGGTAGT+AGG | - | tig0010967:87421-87440 | None:intergenic | 35.0% |
| ACTACCAAAAGTTAATGCAG+AGG | + | tig0010967:87421-87440 | Msa1349670:CDS | 35.0% | |
| TAAGCTTCAGAAGGAAAATC+AGG | - | tig0010967:87477-87496 | None:intergenic | 35.0% | |
| TTCATGCCATTGGAAATTTG+GGG | - | tig0010967:87520-87539 | None:intergenic | 35.0% | |
| ! | TCCGGTGAAGAAACTATTTT+CGG | - | tig0010967:87553-87572 | None:intergenic | 35.0% |
| GTTAAAATAACCTAACACCG+TGG | + | tig0010967:87609-87628 | Msa1349670:intron | 35.0% | |
| GCTGTTTATTGATCAGAACA+TGG | + | tig0010967:87807-87826 | Msa1349670:intron | 35.0% | |
| TAATCTTGTTGAACTTCCTC+CGG | - | tig0010967:87933-87952 | None:intergenic | 35.0% | |
| ACAAAAGAAAGTTGTTCCCT+CGG | + | tig0010967:88044-88063 | Msa1349670:intron | 35.0% | |
| ! | GTTTTTGAACACACAGGTTT+TGG | - | tig0010967:88337-88356 | None:intergenic | 35.0% |
| AAATTTCCAAGCTCACTGGT+TGG | - | tig0010967:87339-87358 | None:intergenic | 40.0% | |
| AGAGAAATTTCCAAGCTCAC+TGG | - | tig0010967:87343-87362 | None:intergenic | 40.0% | |
| ! | AGCTCCTCTGCATTAACTTT+TGG | - | tig0010967:87428-87447 | None:intergenic | 40.0% |
| GTGTTATGGTAAGCTTCAGA+AGG | - | tig0010967:87486-87505 | None:intergenic | 40.0% | |
| AGCTTACCATAACACACAGA+TGG | + | tig0010967:87491-87510 | Msa1349670:CDS | 40.0% | |
| ! | GGTGAAGAAACTATTTTCGG+GGG | - | tig0010967:87550-87569 | None:intergenic | 40.0% |
| ! | CGGTGAAGAAACTATTTTCG+GGG | - | tig0010967:87551-87570 | None:intergenic | 40.0% |
| ! | CCGGTGAAGAAACTATTTTC+GGG | - | tig0010967:87552-87571 | None:intergenic | 40.0% |
| CCCGAAAATAGTTTCTTCAC+CGG | + | tig0010967:87549-87568 | Msa1349670:CDS | 40.0% | |
| TCTTCACCGGACAAATAAGA+AGG | + | tig0010967:87562-87581 | Msa1349670:CDS | 40.0% | |
| CTTCACCGGACAAATAAGAA+GGG | + | tig0010967:87563-87582 | Msa1349670:CDS | 40.0% | |
| ! | CAAAGTAGGGCGTTACAATT+TGG | + | tig0010967:87864-87883 | Msa1349670:CDS | 40.0% |
| ATGCTCCAACATTACCTGAA+AGG | + | tig0010967:87991-88010 | Msa1349670:intron | 40.0% | |
| TGCTCCAACATTACCTGAAA+GGG | + | tig0010967:87992-88011 | Msa1349670:intron | 40.0% | |
| ! | ATACCCCTTTCAGGTAATGT+TGG | - | tig0010967:87999-88018 | None:intergenic | 40.0% |
| AGTTCAGATATACCCCTTTC+AGG | - | tig0010967:88008-88027 | None:intergenic | 40.0% | |
| ATCATCATGAAGACGAGTTC+TGG | + | tig0010967:88365-88384 | Msa1349670:CDS | 40.0% | |
| TCATCATGAAGACGAGTTCT+GGG | + | tig0010967:88366-88385 | Msa1349670:CDS | 40.0% | |
| AAATTTCCAAGCTCACTGGT+TGG | - | tig0010967:87339-87358 | None:intergenic | 40.0% | |
| AGAGAAATTTCCAAGCTCAC+TGG | - | tig0010967:87343-87362 | None:intergenic | 40.0% | |
| ! | AGCTCCTCTGCATTAACTTT+TGG | - | tig0010967:87428-87447 | None:intergenic | 40.0% |
| GTGTTATGGTAAGCTTCAGA+AGG | - | tig0010967:87486-87505 | None:intergenic | 40.0% | |
| AGCTTACCATAACACACAGA+TGG | + | tig0010967:87491-87510 | Msa1349670:CDS | 40.0% | |
| ! | GGTGAAGAAACTATTTTCGG+GGG | - | tig0010967:87550-87569 | None:intergenic | 40.0% |
| ! | CGGTGAAGAAACTATTTTCG+GGG | - | tig0010967:87551-87570 | None:intergenic | 40.0% |
| ! | CCGGTGAAGAAACTATTTTC+GGG | - | tig0010967:87552-87571 | None:intergenic | 40.0% |
| CCCGAAAATAGTTTCTTCAC+CGG | + | tig0010967:87549-87568 | Msa1349670:CDS | 40.0% | |
| TCTTCACCGGACAAATAAGA+AGG | + | tig0010967:87562-87581 | Msa1349670:CDS | 40.0% | |
| CTTCACCGGACAAATAAGAA+GGG | + | tig0010967:87563-87582 | Msa1349670:CDS | 40.0% | |
| ! | CAAAGTAGGGCGTTACAATT+TGG | + | tig0010967:87864-87883 | Msa1349670:CDS | 40.0% |
| ATGCTCCAACATTACCTGAA+AGG | + | tig0010967:87991-88010 | Msa1349670:intron | 40.0% | |
| TGCTCCAACATTACCTGAAA+GGG | + | tig0010967:87992-88011 | Msa1349670:intron | 40.0% | |
| ! | ATACCCCTTTCAGGTAATGT+TGG | - | tig0010967:87999-88018 | None:intergenic | 40.0% |
| AGTTCAGATATACCCCTTTC+AGG | - | tig0010967:88008-88027 | None:intergenic | 40.0% | |
| ATCATCATGAAGACGAGTTC+TGG | + | tig0010967:88365-88384 | Msa1349670:CDS | 40.0% | |
| TCATCATGAAGACGAGTTCT+GGG | + | tig0010967:88366-88385 | Msa1349670:CDS | 40.0% | |
| TGGGTCTCGTTTGAAAACTG+AGG | + | tig0010967:87371-87390 | Msa1349670:CDS | 45.0% | |
| TGGACTCCCCAAATTTCCAA+TGG | + | tig0010967:87511-87530 | Msa1349670:CDS | 45.0% | |
| ! | ACAAATAAGAAGGGCGTGCA+GGG | + | tig0010967:87572-87591 | Msa1349670:CDS | 45.0% |
| ATATGGTAAGCCACGGTGTT+AGG | - | tig0010967:87622-87641 | None:intergenic | 45.0% | |
| ATCAGAACATGGCAACACCT+GGG | + | tig0010967:87818-87837 | Msa1349670:intron | 45.0% | |
| GATATAGAGCCAAGAGAAGC+CGG | + | tig0010967:87911-87930 | Msa1349670:CDS | 45.0% | |
| GCTCCAACATTACCTGAAAG+GGG | + | tig0010967:87993-88012 | Msa1349670:intron | 45.0% | |
| TTTCGGCATGCATACTGTTG+TGG | - | tig0010967:88247-88266 | None:intergenic | 45.0% | |
| ! | GATTGTCGGCTAGTGTCTTT+CGG | - | tig0010967:88264-88283 | None:intergenic | 45.0% |
| ACGTATGCGTGTTCGATTGT+CGG | - | tig0010967:88278-88297 | None:intergenic | 45.0% | |
| !!! | CACAGGTTTTGGAATCTCGT+TGG | - | tig0010967:88326-88345 | None:intergenic | 45.0% |
| TGGGTCTCGTTTGAAAACTG+AGG | + | tig0010967:87371-87390 | Msa1349670:CDS | 45.0% | |
| TGGACTCCCCAAATTTCCAA+TGG | + | tig0010967:87511-87530 | Msa1349670:CDS | 45.0% | |
| ! | ACAAATAAGAAGGGCGTGCA+GGG | + | tig0010967:87572-87591 | Msa1349670:CDS | 45.0% |
| ATATGGTAAGCCACGGTGTT+AGG | - | tig0010967:87622-87641 | None:intergenic | 45.0% | |
| ATCAGAACATGGCAACACCT+GGG | + | tig0010967:87818-87837 | Msa1349670:intron | 45.0% | |
| GATATAGAGCCAAGAGAAGC+CGG | + | tig0010967:87911-87930 | Msa1349670:CDS | 45.0% | |
| GCTCCAACATTACCTGAAAG+GGG | + | tig0010967:87993-88012 | Msa1349670:intron | 45.0% | |
| TTTCGGCATGCATACTGTTG+TGG | - | tig0010967:88247-88266 | None:intergenic | 45.0% | |
| ! | GATTGTCGGCTAGTGTCTTT+CGG | - | tig0010967:88264-88283 | None:intergenic | 45.0% |
| ACGTATGCGTGTTCGATTGT+CGG | - | tig0010967:88278-88297 | None:intergenic | 45.0% | |
| !!! | CACAGGTTTTGGAATCTCGT+TGG | - | tig0010967:88326-88345 | None:intergenic | 45.0% |
| TCTTCTCCAACCAGTGAGCT+TGG | + | tig0010967:87330-87349 | Msa1349670:CDS | 50.0% | |
| GGGAGTCCATCTGTGTGTTA+TGG | - | tig0010967:87500-87519 | None:intergenic | 50.0% | |
| GGGAGCTCAATTCATGCCAT+TGG | - | tig0010967:87530-87549 | None:intergenic | 50.0% | |
| ! | GCACGCCCTTCTTATTTGTC+CGG | - | tig0010967:87571-87590 | None:intergenic | 50.0% |
| ! | GACAAATAAGAAGGGCGTGC+AGG | + | tig0010967:87571-87590 | Msa1349670:CDS | 50.0% |
| GATCAGAACATGGCAACACC+TGG | + | tig0010967:87817-87836 | Msa1349670:intron | 50.0% | |
| ! | ACTTCATCCGTTTGAGACCC+AGG | - | tig0010967:87838-87857 | None:intergenic | 50.0% |
| GACAATCGAACACGCATACG+TGG | + | tig0010967:88277-88296 | Msa1349670:CDS | 50.0% | |
| TCTTCTCCAACCAGTGAGCT+TGG | + | tig0010967:87330-87349 | Msa1349670:CDS | 50.0% | |
| GGGAGTCCATCTGTGTGTTA+TGG | - | tig0010967:87500-87519 | None:intergenic | 50.0% | |
| GGGAGCTCAATTCATGCCAT+TGG | - | tig0010967:87530-87549 | None:intergenic | 50.0% | |
| ! | GCACGCCCTTCTTATTTGTC+CGG | - | tig0010967:87571-87590 | None:intergenic | 50.0% |
| ! | GACAAATAAGAAGGGCGTGC+AGG | + | tig0010967:87571-87590 | Msa1349670:CDS | 50.0% |
| GATCAGAACATGGCAACACC+TGG | + | tig0010967:87817-87836 | Msa1349670:intron | 50.0% | |
| ! | ACTTCATCCGTTTGAGACCC+AGG | - | tig0010967:87838-87857 | None:intergenic | 50.0% |
| GACAATCGAACACGCATACG+TGG | + | tig0010967:88277-88296 | Msa1349670:CDS | 50.0% | |
| GGCAACACCTGGGTCTCAAA+CGG | + | tig0010967:87828-87847 | Msa1349670:CDS | 55.0% | |
| ATAGAGCCAAGAGAAGCCGG+AGG | + | tig0010967:87914-87933 | Msa1349670:CDS | 55.0% | |
| GAACTTCCTCCGGCTTCTCT+TGG | - | tig0010967:87923-87942 | None:intergenic | 55.0% | |
| GGCAACACCTGGGTCTCAAA+CGG | + | tig0010967:87828-87847 | Msa1349670:CDS | 55.0% | |
| ATAGAGCCAAGAGAAGCCGG+AGG | + | tig0010967:87914-87933 | Msa1349670:CDS | 55.0% | |
| GAACTTCCTCCGGCTTCTCT+TGG | - | tig0010967:87923-87942 | None:intergenic | 55.0% | |
| ! | ATAAGAAGGGCGTGCAGGGC+AGG | + | tig0010967:87576-87595 | Msa1349670:CDS | 60.0% |
| GTGCAGGGCAGGAGATTTGC+AGG | + | tig0010967:87587-87606 | Msa1349670:CDS | 60.0% | |
| ! | ATAAGAAGGGCGTGCAGGGC+AGG | + | tig0010967:87576-87595 | Msa1349670:CDS | 60.0% |
| GTGCAGGGCAGGAGATTTGC+AGG | + | tig0010967:87587-87606 | Msa1349670:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0010967 | gene | 87165 | 88551 | 87165 | ID=Msa1349670;Name=Msa1349670 |
| tig0010967 | mRNA | 87165 | 88551 | 87165 | ID=Msa1349670-mRNA-1;Parent=Msa1349670;Name=Msa1349670-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|1|1|4|0|251 |
| tig0010967 | exon | 87165 | 87608 | 87165 | ID=Msa1349670-mRNA-1:exon:7014;Parent=Msa1349670-mRNA-1 |
| tig0010967 | exon | 87823 | 87957 | 87823 | ID=Msa1349670-mRNA-1:exon:7015;Parent=Msa1349670-mRNA-1 |
| tig0010967 | exon | 88253 | 88387 | 88253 | ID=Msa1349670-mRNA-1:exon:7016;Parent=Msa1349670-mRNA-1 |
| tig0010967 | exon | 88510 | 88551 | 88510 | ID=Msa1349670-mRNA-1:exon:7017;Parent=Msa1349670-mRNA-1 |
| tig0010967 | CDS | 87165 | 87608 | 87165 | ID=Msa1349670-mRNA-1:cds;Parent=Msa1349670-mRNA-1 |
| tig0010967 | CDS | 87823 | 87957 | 87823 | ID=Msa1349670-mRNA-1:cds;Parent=Msa1349670-mRNA-1 |
| tig0010967 | CDS | 88253 | 88387 | 88253 | ID=Msa1349670-mRNA-1:cds;Parent=Msa1349670-mRNA-1 |
| tig0010967 | CDS | 88510 | 88551 | 88510 | ID=Msa1349670-mRNA-1:cds;Parent=Msa1349670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
