AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0712800

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0712800 MtrunA17_Chr5g0405991 97.785 316 7 0 1 316 1 316 0.0 641
Msa0712800 MtrunA17_Chr8g0371381 79.000 300 63 0 17 316 20 319 0.0 511
Msa0712800 MtrunA17_Chr1g0157051 69.903 309 92 1 8 315 9 317 2.98e-159 447
Msa0712800 MtrunA17_Chr1g0204011 56.230 313 134 2 7 316 10 322 2.69e-126 363
Msa0712800 MtrunA17_Chr1g0188431 45.679 324 157 4 3 316 13 327 7.08e-101 299
Msa0712800 MtrunA17_Chr6g0477071 44.136 324 164 4 1 316 28 342 2.52e-92 278
Msa0712800 MtrunA17_Chr7g0268501 46.688 317 151 8 10 316 12 320 5.67e-92 276
Msa0712800 MtrunA17_Chr7g0268521 46.688 317 151 8 10 316 12 320 5.67e-92 276
Msa0712800 MtrunA17_Chr3g0128061 45.768 319 164 5 6 316 9 326 3.18e-90 272
Msa0712800 MtrunA17_Chr4g0024121 46.541 318 158 6 8 316 12 326 8.75e-90 271
Msa0712800 MtrunA17_Chr2g0322861 47.188 320 155 8 7 316 71 386 8.02e-89 270
Msa0712800 MtrunA17_Chr2g0279041 43.131 313 168 3 10 315 11 320 2.09e-87 265
Msa0712800 MtrunA17_Chr1g0194151 44.688 320 164 9 10 316 14 333 1.16e-81 250
Msa0712800 MtrunA17_Chr5g0402571 41.875 320 178 5 3 316 9 326 2.31e-80 247
Msa0712800 MtrunA17_Chr2g0292211 41.390 331 172 9 2 316 17 341 2.09e-79 246
Msa0712800 MtrunA17_Chr5g0404721 44.079 304 163 5 20 316 27 330 2.22e-79 244
Msa0712800 MtrunA17_Chr7g0254201 42.857 301 157 6 23 316 20 312 4.35e-79 243
Msa0712800 MtrunA17_Chr1g0175561 40.683 322 177 10 5 316 9 326 5.04e-79 243
Msa0712800 MtrunA17_Chr5g0402581 41.801 311 175 4 12 316 16 326 5.29e-79 243
Msa0712800 MtrunA17_Chr1g0194271 43.027 337 171 10 1 316 4 340 7.53e-79 243
Msa0712800 MtrunA17_Chr2g0299691 42.769 325 168 9 4 316 40 358 7.68e-79 244
Msa0712800 MtrunA17_Chr7g0225221 41.176 323 175 9 3 316 4 320 1.01e-78 242
Msa0712800 MtrunA17_Chr4g0068621 40.237 338 178 7 1 316 1 336 2.62e-78 242
Msa0712800 MtrunA17_Chr7g0258811 41.640 317 173 9 11 316 56 371 4.28e-78 243
Msa0712800 MtrunA17_Chr2g0292091 42.105 304 164 7 23 316 24 325 4.37e-78 241
Msa0712800 MtrunA17_Chr4g0063671 40.798 326 177 7 1 316 1 320 4.93e-78 241
Msa0712800 MtrunA17_Chr2g0291751 41.104 326 179 9 3 316 6 330 7.29e-78 241
Msa0712800 MtrunA17_Chr5g0401431 40.923 325 177 7 3 315 7 328 5.79e-77 238
Msa0712800 MtrunA17_Chr2g0320101 39.815 324 180 5 1 316 1 317 7.69e-77 238
Msa0712800 MtrunA17_Chr2g0292241 39.877 326 184 8 2 316 6 330 8.39e-77 239
Msa0712800 MtrunA17_Chr3g0106921 40.498 321 174 8 6 316 7 320 1.06e-76 237
Msa0712800 MtrunA17_Chr2g0292271 39.938 323 182 8 5 316 9 330 1.72e-76 238
Msa0712800 MtrunA17_Chr2g0320071 40.184 326 173 6 4 316 1 317 3.39e-76 236
Msa0712800 MtrunA17_Chr4g0013171 41.379 319 171 8 7 316 10 321 3.70e-76 236
Msa0712800 MtrunA17_Chr3g0129051 40.000 325 172 7 4 316 9 322 4.35e-76 236
Msa0712800 MtrunA17_Chr4g0072091 43.750 304 157 8 23 316 24 323 6.27e-76 235
Msa0712800 MtrunA17_Chr1g0164891 44.040 302 159 7 25 316 91 392 9.07e-76 237
Msa0712800 MtrunA17_Chr2g0292251 40.909 308 172 7 18 316 23 329 1.35e-75 236
Msa0712800 MtrunA17_Chr4g0053871 41.304 322 169 8 3 312 7 320 2.04e-75 234
Msa0712800 MtrunA17_Chr4g0070951 42.236 322 171 8 7 316 11 329 2.60e-75 234
Msa0712800 MtrunA17_Chr8g0372601 42.434 304 168 5 20 316 27 330 5.51e-75 233
Msa0712800 MtrunA17_Chr2g0320091 39.755 327 174 7 4 316 1 318 6.02e-75 233
Msa0712800 MtrunA17_Chr3g0114451 41.390 331 166 8 1 316 1 318 6.78e-75 233
Msa0712800 MtrunA17_Chr2g0292151 39.692 325 184 8 3 316 7 330 3.24e-74 232
Msa0712800 MtrunA17_Chr4g0013721 40.850 306 176 4 15 316 92 396 4.63e-74 233
Msa0712800 MtrunA17_Chr1g0148021 43.092 304 161 8 23 316 27 328 5.76e-74 230
Msa0712800 MtrunA17_Chr2g0292111 39.264 326 186 8 2 316 6 330 7.18e-74 231
Msa0712800 MtrunA17_Chr2g0320031 39.024 328 179 7 1 316 1 319 7.81e-74 230
Msa0712800 MtrunA17_Chr4g0013181 43.144 299 155 7 26 316 62 353 2.06e-73 230
Msa0712800 MtrunA17_Chr1g0197411 39.571 326 185 8 1 316 7 330 9.83e-73 228
Msa0712800 MtrunA17_Chr1g0155611 43.279 305 159 7 23 316 46 347 1.29e-72 228
Msa0712800 MtrunA17_Chr2g0292181 40.584 308 173 7 18 316 33 339 1.50e-72 228
Msa0712800 MtrunA17_Chr2g0292261 39.617 313 169 8 18 316 24 330 1.83e-72 227
Msa0712800 MtrunA17_Chr5g0400331 42.574 303 160 7 27 316 30 331 2.40e-72 226
Msa0712800 MtrunA17_Chr2g0292101 40.924 303 169 7 23 316 25 326 3.43e-72 226
Msa0712800 MtrunA17_Chr7g0254231 38.926 298 170 6 23 316 22 311 4.03e-72 225
Msa0712800 MtrunA17_Chr4g0013821 40.063 317 184 5 4 316 10 324 4.93e-72 226
Msa0712800 MtrunA17_Chr7g0224371 40.063 317 175 9 7 316 14 322 1.02e-71 224
Msa0712800 MtrunA17_Chr6g0460711 36.859 312 187 6 10 316 8 314 1.70e-71 224
Msa0712800 MtrunA17_Chr5g0438021 39.441 322 179 7 3 316 12 325 2.10e-71 224
Msa0712800 MtrunA17_Chr5g0421411 43.431 274 142 7 55 316 13 285 1.47e-70 220
Msa0712800 MtrunA17_Chr8g0364291 40.000 310 170 6 19 316 19 324 1.53e-70 222
Msa0712800 MtrunA17_Chr2g0320051 38.994 318 175 7 8 316 11 318 2.49e-70 221
Msa0712800 MtrunA17_Chr2g0296621 40.728 302 161 5 23 316 50 341 3.62e-70 221
Msa0712800 MtrunA17_Chr2g0329641 38.209 335 183 8 3 316 4 335 4.60e-70 221
Msa0712800 MtrunA17_Chr3g0136751 39.252 321 182 7 4 316 7 322 6.40e-70 220
Msa0712800 MtrunA17_Chr4g0038151 36.562 320 194 5 3 316 5 321 1.05e-69 219
Msa0712800 MtrunA17_Chr5g0432441 39.117 317 176 5 10 316 17 326 1.74e-69 219
Msa0712800 MtrunA17_Chr2g0320061 38.532 327 181 7 1 316 1 318 1.74e-69 219
Msa0712800 MtrunA17_Chr1g0213061 38.941 321 179 8 6 316 8 321 1.83e-69 219
Msa0712800 MtrunA17_Chr7g0244461 38.462 312 179 4 11 316 8 312 2.91e-69 218
Msa0712800 MtrunA17_Chr4g0046131 40.328 305 167 7 21 312 40 342 4.37e-69 218
Msa0712800 MtrunA17_Chr4g0076211 41.333 300 161 5 24 316 42 333 7.15e-69 218
Msa0712800 MtrunA17_Chr2g0292291 39.286 308 178 6 18 316 25 332 2.14e-68 217
Msa0712800 MtrunA17_Chr4g0043391 36.760 321 192 7 3 316 8 324 2.89e-68 216
Msa0712800 MtrunA17_Chr5g0432351 40.557 323 171 9 7 316 7 321 8.00e-68 214
Msa0712800 MtrunA17_Chr6g0451571 40.125 319 178 8 7 316 20 334 1.24e-67 214
Msa0712800 MtrunA17_Chr3g0129061 39.877 326 171 8 3 316 10 322 1.35e-67 214
Msa0712800 MtrunA17_Chr7g0244451 38.700 323 184 5 1 316 1 316 2.33e-67 213
Msa0712800 MtrunA17_Chr6g0467161 38.614 303 170 7 21 316 43 336 3.39e-67 213
Msa0712800 MtrunA17_Chr2g0279061 43.874 253 135 2 67 315 12 261 8.21e-67 210
Msa0712800 MtrunA17_Chr5g0432341 39.514 329 178 9 1 316 1 321 9.36e-67 212
Msa0712800 MtrunA17_Chr4g0013201 40.333 300 166 6 23 316 46 338 1.41e-66 212
Msa0712800 MtrunA17_Chr6g0467121 40.066 302 165 6 21 316 72 363 1.47e-66 213
Msa0712800 MtrunA17_Chr4g0038161 36.250 320 194 6 3 316 5 320 3.03e-66 210
Msa0712800 MtrunA17_Chr5g0432331 40.923 325 162 10 12 316 38 352 5.63e-66 211
Msa0712800 MtrunA17_Chr4g0038171 36.137 321 194 7 3 316 5 321 1.29e-65 209
Msa0712800 MtrunA17_Chr3g0129041 40.810 321 162 9 12 316 14 322 2.12e-65 208
Msa0712800 MtrunA17_Chr6g0467251 38.462 299 169 6 21 312 34 324 5.30e-65 208
Msa0712800 MtrunA17_Chr4g0075241 36.184 304 185 5 20 316 26 327 1.26e-64 206
Msa0712800 MtrunA17_Chr3g0106901 40.312 320 171 9 7 316 14 323 4.76e-63 202
Msa0712800 MtrunA17_Chr4g0013191 37.463 339 180 9 4 316 8 340 2.91e-61 198
Msa0712800 MtrunA17_Chr3g0107881 38.871 319 175 8 10 316 14 324 6.63e-59 192
Msa0712800 MtrunA17_Chr2g0316481 34.821 336 182 7 17 315 70 405 2.23e-58 192
Msa0712800 MtrunA17_Chr2g0316791 35.417 336 180 7 17 315 70 405 9.18e-58 191
Msa0712800 MtrunA17_Chr2g0316831 34.821 336 182 7 17 315 106 441 2.39e-57 191
Msa0712800 MtrunA17_Chr2g0278671 37.762 286 168 5 23 302 24 305 4.66e-57 187
Msa0712800 MtrunA17_Chr2g0316191 34.718 337 182 7 17 315 70 406 1.01e-56 188
Msa0712800 MtrunA17_Chr1g0181511 37.255 306 178 6 20 316 23 323 1.47e-55 183
Msa0712800 MtrunA17_Chr2g0311251 34.226 336 183 7 17 315 5 339 3.34e-54 180
Msa0712800 MtrunA17_Chr5g0413051 33.333 309 187 7 23 316 73 377 9.08e-53 177
Msa0712800 MtrunA17_Chr1g0181431 35.484 310 171 6 23 316 27 323 2.49e-52 174
Msa0712800 MtrunA17_Chr5g0432401 35.185 324 152 9 3 315 9 285 7.85e-52 172
Msa0712800 MtrunA17_Chr1g0181481 35.350 314 173 7 20 316 23 323 6.39e-51 171
Msa0712800 MtrunA17_Chr4g0074851 33.542 319 183 5 10 312 19 324 9.68e-51 171
Msa0712800 MtrunA17_Chr2g0311241 30.769 377 182 7 17 315 54 429 1.93e-50 172
Msa0712800 MtrunA17_Chr4g0004591 31.034 319 154 6 23 315 77 355 1.72e-44 155
Msa0712800 MtrunA17_Chr2g0316811 36.032 247 138 5 17 245 44 288 1.03e-41 147
Msa0712800 MtrunA17_Chr2g0292281 40.000 210 109 6 114 316 17 216 1.70e-41 144
Msa0712800 MtrunA17_Chr3g0114461 39.899 198 90 8 133 316 10 192 3.08e-36 129
Msa0712800 MtrunA17_Chr2g0316141 32.982 285 135 9 69 315 11 277 2.38e-33 124
Msa0712800 MtrunA17_Chr2g0316181 32.982 285 135 9 69 315 11 277 2.38e-33 124
Msa0712800 MtrunA17_Chr3g0114491 49.074 108 54 1 23 129 18 125 1.08e-26 102
Msa0712800 MtrunA17_Chr7g0254181 43.119 109 60 1 78 186 15 121 4.63e-23 93.2
Msa0712800 MtrunA17_Chr6g0468731 61.429 70 24 1 62 131 22 88 2.07e-22 89.4
Msa0712800 MtrunA17_Chr3g0104101 38.732 142 76 5 185 316 9 149 3.64e-21 88.2
Msa0712800 MtrunA17_Chr5g0432321 37.903 124 68 3 143 265 17 132 7.81e-20 84.0
Msa0712800 MtrunA17_Chr1g0181501 32.292 192 116 7 133 316 4 189 1.82e-19 84.7
Msa0712800 MtrunA17_Chr1g0196191 50.575 87 33 1 53 129 5 91 2.40e-19 83.2
Msa0712800 MtrunA17_Chr7g0254171 47.945 73 38 0 68 140 3 75 1.81e-18 80.5
Msa0712800 MtrunA17_Chr1g0181491 40.187 107 63 1 23 129 12 117 1.49e-17 78.2
Msa0712800 MtrunA17_Chr3g0137751 26.667 285 136 12 36 305 88 314 6.19e-17 80.1
Msa0712800 MtrunA17_Chr7g0268491 42.500 80 37 3 243 316 21 97 3.47e-13 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0712800 AT5G42180.1 66.987 312 100 2 7 315 5 316 2.21e-155 437
Msa0712800 AT5G51890.1 56.646 316 130 3 8 316 7 322 2.07e-128 369
Msa0712800 AT4G33420.1 45.741 317 157 5 4 316 20 325 1.10e-94 284
Msa0712800 AT4G33420.2 45.741 317 157 5 4 316 67 372 5.74e-94 283
Msa0712800 AT1G05260.1 45.988 324 162 8 1 316 7 325 5.88e-92 277
Msa0712800 AT4G11290.1 43.614 321 172 6 5 316 6 326 1.67e-89 270
Msa0712800 AT5G15180.1 45.652 322 160 8 7 316 11 329 8.32e-89 269
Msa0712800 AT3G21770.1 46.801 297 148 6 12 302 18 310 8.78e-88 266
Msa0712800 AT3G01190.1 45.000 320 165 8 3 316 7 321 2.93e-87 265
Msa0712800 AT4G36430.1 44.951 307 160 6 18 316 25 330 8.56e-87 264
Msa0712800 AT2G39040.1 47.712 306 147 7 23 316 46 350 2.47e-84 258
Msa0712800 AT1G05240.1 45.847 301 147 8 23 312 26 321 1.17e-82 253
Msa0712800 AT1G05250.1 45.847 301 147 8 23 312 26 321 1.17e-82 253
Msa0712800 AT1G71695.1 45.724 304 151 6 21 316 42 339 2.13e-82 253
Msa0712800 AT2G18150.1 43.098 297 162 4 27 316 40 336 3.82e-82 252
Msa0712800 AT2G18140.1 43.564 303 164 4 21 316 33 335 1.16e-81 251
Msa0712800 AT4G31760.1 40.379 317 173 6 10 316 16 326 2.03e-81 250
Msa0712800 AT4G16270.1 44.554 303 155 7 23 316 50 348 1.18e-80 249
Msa0712800 AT5G14130.1 42.236 322 175 7 3 316 12 330 2.16e-80 247
Msa0712800 AT2G41480.1 43.210 324 167 6 7 316 8 328 4.25e-80 246
Msa0712800 AT5G06720.1 40.867 323 175 8 7 316 14 333 5.49e-80 246
Msa0712800 AT5G14130.2 42.236 322 175 7 3 316 53 371 6.14e-80 248
Msa0712800 AT5G39580.1 41.590 327 172 10 1 316 1 319 2.70e-79 244
Msa0712800 AT3G03670.1 37.383 321 194 3 1 316 3 321 9.35e-79 243
Msa0712800 AT5G66390.1 40.938 320 182 4 4 316 14 333 1.14e-78 243
Msa0712800 AT2G18980.1 41.509 318 169 8 10 316 12 323 6.99e-78 241
Msa0712800 AT4G37530.1 42.810 306 160 7 23 316 27 329 9.55e-78 241
Msa0712800 AT5G64120.1 39.697 330 177 10 1 316 7 328 2.43e-77 239
Msa0712800 AT5G19890.1 44.702 302 155 6 23 316 30 327 2.86e-77 239
Msa0712800 AT3G49960.1 41.231 325 178 7 4 316 6 329 5.40e-77 239
Msa0712800 AT5G67400.1 42.331 326 173 7 3 316 7 329 1.07e-76 238
Msa0712800 AT3G50990.1 40.248 323 183 5 4 316 19 341 1.47e-76 238
Msa0712800 AT4G30170.1 41.639 305 161 8 23 316 27 325 3.11e-76 236
Msa0712800 AT5G06730.1 38.941 321 184 7 7 316 15 334 6.61e-76 237
Msa0712800 AT1G44970.1 44.000 300 156 5 27 316 49 346 8.88e-76 236
Msa0712800 AT5G17820.1 38.801 317 177 7 7 316 7 313 2.67e-75 234
Msa0712800 AT4G37520.1 42.484 306 161 7 23 316 27 329 3.12e-75 234
Msa0712800 AT2G24800.1 41.639 305 161 7 23 316 31 329 2.93e-74 231
Msa0712800 AT2G22420.1 38.125 320 193 4 1 316 1 319 3.13e-74 231
Msa0712800 AT4G08770.1 43.607 305 160 8 23 316 24 327 4.12e-74 232
Msa0712800 AT5G17820.2 38.801 317 177 7 7 316 60 366 4.15e-74 233
Msa0712800 AT1G68850.1 39.752 322 178 9 10 316 15 335 6.76e-74 231
Msa0712800 AT5G05340.1 41.311 305 158 7 23 316 30 324 1.54e-73 229
Msa0712800 AT4G17690.1 42.244 303 162 6 22 316 25 322 2.26e-72 227
Msa0712800 AT4G37520.2 41.830 306 160 8 23 316 27 326 3.02e-72 226
Msa0712800 AT4G08780.1 42.295 305 164 8 23 316 24 327 1.19e-71 225
Msa0712800 AT2G38380.1 41.830 306 163 9 23 316 31 333 1.25e-71 226
Msa0712800 AT2G38390.1 37.963 324 192 6 2 316 10 333 9.90e-71 223
Msa0712800 AT4G37530.2 45.455 253 131 5 23 269 27 278 1.59e-70 220
Msa0712800 AT3G32980.1 39.688 320 180 9 8 316 17 334 1.72e-70 223
Msa0712800 AT4G26010.1 38.558 319 176 6 5 316 4 309 5.24e-70 220
Msa0712800 AT5G64100.1 39.344 305 160 8 25 316 39 331 8.10e-70 220
Msa0712800 AT2G35380.1 39.697 330 178 11 6 316 8 335 9.67e-70 220
Msa0712800 AT5G40150.1 41.694 307 156 8 23 316 32 328 9.83e-70 220
Msa0712800 AT4G26010.2 38.558 319 176 6 5 316 32 337 1.33e-69 220
Msa0712800 AT5G19880.1 40.566 318 175 10 11 316 14 329 1.61e-69 219
Msa0712800 AT3G49120.1 40.656 305 169 8 23 316 32 335 2.70e-69 219
Msa0712800 AT1G14550.1 41.447 304 160 8 23 316 26 321 2.86e-69 218
Msa0712800 AT5G64110.1 40.404 297 166 5 27 316 38 330 1.53e-68 217
Msa0712800 AT1G30870.1 40.066 302 166 6 23 316 51 345 1.87e-68 217
Msa0712800 AT1G49570.1 41.379 290 163 5 20 302 43 332 2.08e-67 214
Msa0712800 AT3G28200.1 40.728 302 165 6 23 316 21 316 3.99e-67 213
Msa0712800 AT4G33870.1 37.538 333 166 5 23 314 68 399 1.40e-66 214
Msa0712800 AT5G47000.1 37.654 324 185 7 4 316 13 330 1.64e-66 212
Msa0712800 AT1G14540.1 36.503 326 183 10 4 316 1 315 1.49e-65 209
Msa0712800 AT1G34510.1 37.421 318 181 6 5 316 4 309 3.66e-65 207
Msa0712800 AT2G34060.1 38.436 307 172 7 21 313 40 343 1.01e-64 207
Msa0712800 AT3G49110.1 39.016 305 174 8 23 316 33 336 1.59e-64 207
Msa0712800 AT5G58390.1 38.941 321 179 8 5 316 4 316 3.13e-64 205
Msa0712800 AT5G22410.1 35.976 328 189 10 1 313 1 322 3.47e-64 206
Msa0712800 AT5G58400.1 37.461 323 181 9 6 316 12 325 1.19e-63 204
Msa0712800 AT2G43480.1 36.578 339 188 9 1 316 1 335 2.42e-63 204
Msa0712800 AT5G24070.1 35.410 305 182 7 23 316 35 335 2.03e-61 199
Msa0712800 AT1G24110.1 37.025 316 188 7 10 316 9 322 5.17e-61 197
Msa0712800 AT4G25980.1 34.483 319 195 6 8 316 12 326 1.91e-59 193
Msa0712800 AT3G17070.1 34.161 322 204 5 3 316 18 339 7.09e-58 190
Msa0712800 AT1G77100.1 36.086 327 190 10 1 316 1 319 6.17e-53 176
Msa0712800 AT5G39580.2 46.392 194 97 3 2 195 8 194 7.72e-52 171
Msa0712800 AT2G37130.1 34.295 312 175 7 22 316 29 327 2.82e-50 170
Msa0712800 AT2G37130.2 34.304 309 173 7 25 316 1 296 8.84e-50 167
Msa0712800 AT4G21960.1 32.836 335 192 6 2 316 6 327 5.06e-49 166
Msa0712800 AT2G35380.2 40.486 247 131 10 84 316 3 247 2.62e-47 160
Msa0712800 AT4G25980.2 42.162 185 104 2 8 192 57 238 1.63e-46 159
Msa0712800 AT2G24800.2 49.123 171 81 3 23 192 31 196 1.88e-46 157
Msa0712800 AT3G17070.2 33.462 260 164 6 65 316 18 276 6.23e-42 146
Msa0712800 AT4G35970.1 29.474 285 137 10 34 303 6 241 7.34e-18 82.4
Msa0712800 AT4G32320.1 28.302 265 120 10 55 305 115 323 1.16e-16 79.7
Msa0712800 AT4G35970.2 29.167 264 123 10 34 282 6 220 8.92e-14 70.1
Msa0712800 AT3G42570.1 34.286 105 67 1 84 186 43 147 1.07e-11 62.4

Find 64 sgRNAs with CRISPR-Local

Find 225 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTAACTTCAACTAAATTA+AGG 0.230530 5_1:+4605585 None:intergenic
GAAACCAATTGCTTGGTCTT+TGG 0.238144 5_1:+4605727 None:intergenic
AATGCATGCAATGAAATATT+TGG 0.268765 5_1:+4606520 None:intergenic
AAACCAATTGCTTGGTCTTT+GGG 0.281172 5_1:+4605728 None:intergenic
CATGTGTAGCATTAAAGTTT+TGG 0.328425 5_1:+4605935 None:intergenic
TTGTCTTGTTTCACTGGCCT+TGG 0.339540 5_1:+4606196 None:intergenic
TACAGTCTGGAGGACCTAAA+TGG 0.359036 5_1:-4606253 Msa0712800:intron
AGCAAGGGACGCAGTTTATC+TGG 0.362051 5_1:-4606416 Msa0712800:intron
TGGTAATTGTCTTGTTTCAC+TGG 0.384054 5_1:+4606190 None:intergenic
AGTTAACGAACTGGTCATCT+AGG 0.389273 5_1:-4607047 None:intergenic
CAGCCCAAAGACCAAGCAAT+TGG 0.410084 5_1:-4605731 Msa0712800:CDS
TCAATGGTGGGCAAGAAGTT+AGG 0.414717 5_1:-4605636 Msa0712800:CDS
TGATAAATCATGCCATGATC+TGG 0.415842 5_1:-4606826 Msa0712800:CDS
AGCAATCATGGAAGTGCATT+CGG 0.445468 5_1:+4606736 None:intergenic
AAGAAAACAAGCCTTGTTGT+TGG 0.459749 5_1:+4605773 None:intergenic
CTATGGTAGCAAACATTTGT+TGG 0.463780 5_1:+4605239 None:intergenic
GAAATCAAAGATGAGTTCAA+TGG 0.464294 5_1:+4606978 None:intergenic
AAATCACCACTTTGAGAAGC+AGG 0.467778 5_1:+4605311 None:intergenic
TAAGTTTGCCGCCTCACAAA+AGG 0.470132 5_1:-4605704 Msa0712800:CDS
GTTCCAAAAGGAAGAAAAGA+TGG 0.475939 5_1:-4606227 Msa0712800:CDS
GAAGACCTGGTAGCTCTGTC+AGG 0.477249 5_1:-4606107 Msa0712800:intron
AAATAATATACTCCAGATCA+TGG 0.488942 5_1:+4606814 None:intergenic
TGCATTCGGAGAAGTGCTGC+TGG 0.491913 5_1:+4606750 None:intergenic
ATACTCGAACGAAGCAATCA+TGG 0.494818 5_1:+4606724 None:intergenic
AAATCAAAGATGAGTTCAAT+GGG 0.496389 5_1:+4606979 None:intergenic
AAACTTAGAAACCAATTGCT+TGG 0.500113 5_1:+4605720 None:intergenic
CTTAATTGACATGGCTGTCA+TGG 0.507039 5_1:-4606919 Msa0712800:exon
TTATCGAAATTTGTTGCAGA+AGG 0.514459 5_1:+4605817 None:intergenic
AAAACAAGCCTTGTTGTTGG+AGG 0.517001 5_1:+4605776 None:intergenic
TCAGCACAAGAAACTACGCC+AGG 0.522780 5_1:+4606454 None:intergenic
CCTAAATGGAATGTTCCAAA+AGG 0.523518 5_1:-4606239 Msa0712800:CDS
TATGTAGGAGGGCATACCTT+AGG 0.527648 5_1:-4605991 Msa0712800:intron
AGCATTGTCAGTGGAAGACC+TGG 0.541171 5_1:-4606120 Msa0712800:CDS
ACGAGCCCTGCTTCTCAAAG+TGG 0.542013 5_1:-4605317 Msa0712800:three_prime_UTR
GCATTAGAAGCTAAATGCCC+TGG 0.544431 5_1:-4606472 Msa0712800:CDS
GCAAACGATTGATGTAATGA+AGG 0.545643 5_1:+4605904 None:intergenic
CTGTGAAGGATGCTACTGCT+AGG 0.556569 5_1:-4606785 Msa0712800:CDS
CTTTAATGCTACACATGACG+TGG 0.559892 5_1:-4605929 Msa0712800:CDS
CTTTGAGAAGCAGGGCTCGT+GGG 0.564974 5_1:+4605320 None:intergenic
TATTCTCGCTCTCGCAGCAA+GGG 0.565246 5_1:-4606431 Msa0712800:CDS
AGTTGTGATATGTTGAATGT+TGG 0.566339 5_1:+4606164 None:intergenic
ACTTTGAGAAGCAGGGCTCG+TGG 0.568773 5_1:+4605319 None:intergenic
GTTAACGAACTGGTCATCTA+GGG 0.576864 5_1:-4607046 None:intergenic
GATATGTTGAATGTTGGTGC+TGG 0.579055 5_1:+4606170 None:intergenic
GCATGCAATGAAATATTTGG+CGG 0.589005 5_1:+4606523 None:intergenic
TGTGAAGGATGCTACTGCTA+GGG 0.598284 5_1:-4606784 Msa0712800:CDS
ATATTCTCGCTCTCGCAGCA+AGG 0.601121 5_1:-4606432 Msa0712800:CDS
CTCTCAAAGAGCATTGTCAG+TGG 0.611421 5_1:-4606129 Msa0712800:CDS
CAAACGATTGATGTAATGAA+GGG 0.613974 5_1:+4605905 None:intergenic
TGGTGGGCAAGAAGTTAGGA+AGG 0.619256 5_1:-4605632 Msa0712800:CDS
AAAAGATGGAAGAACATCCA+AGG 0.622128 5_1:-4606213 Msa0712800:CDS
AATTATTAGATGAGATAATG+TGG 0.623762 5_1:+4607023 None:intergenic
GAATACCTGACAGAGCTACC+AGG 0.624282 5_1:+4606102 None:intergenic
TGAGCAGTGAGAGAAGCCTA+AGG 0.624872 5_1:+4605975 None:intergenic
AAATGAGTAGCATCAATGGT+GGG 0.625299 5_1:-4605648 Msa0712800:CDS
AATCACCACTTTGAGAAGCA+GGG 0.627172 5_1:+4605312 None:intergenic
TCTGTGCTGCTAAATTCGAA+AGG 0.630236 5_1:-4606571 Msa0712800:CDS
AAAATGAGTAGCATCAATGG+TGG 0.631742 5_1:-4605649 Msa0712800:CDS
TGTTGCAGAAGGATCCATAG+TGG 0.631760 5_1:+4605828 None:intergenic
AAAAGTACTCTTAATTGACA+TGG 0.635235 5_1:-4606928 Msa0712800:exon
ATGTATATTCTACAGTCTGG+AGG 0.635741 5_1:-4606263 Msa0712800:intron
TATCGGTCTTGTCAAGAACA+TGG 0.635885 5_1:-4605262 Msa0712800:three_prime_UTR
AAGTTGATCCTCCAACAACA+AGG 0.651887 5_1:-4605784 Msa0712800:CDS
CAGCACAAGAAACTACGCCA+GGG 0.694829 5_1:+4606455 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTGTAGTTTTTAACTTT+AGG + chr5_1:4606211-4606230 None:intergenic 15.0%
!! AATTAACTTCAACTAAATTA+AGG + chr5_1:4606706-4606725 None:intergenic 15.0%
!!! TTTTTGTAGTTTTTAACTTT+AGG + chr5_1:4606211-4606230 None:intergenic 15.0%
!! AATTAACTTCAACTAAATTA+AGG + chr5_1:4606706-4606725 None:intergenic 15.0%
!! AATTATTAGATGAGATAATG+TGG + chr5_1:4605268-4605287 None:intergenic 20.0%
!!! TTTGATTATCATTTTTTCAG+TGG - chr5_1:4605405-4605424 Msa0712800:intron 20.0%
!! TGAATAATCAAATGTATAGA+TGG + chr5_1:4605650-4605669 None:intergenic 20.0%
!!! TTTTTTTCCTATACTTTTGA+AGG - chr5_1:4605683-4605702 Msa0712800:CDS 20.0%
!!! TTTTTTCCTATACTTTTGAA+GGG - chr5_1:4605684-4605703 Msa0712800:CDS 20.0%
!!! AAGTTTTAACTGATAAATGA+TGG - chr5_1:4605995-4606014 Msa0712800:intron 20.0%
!! AAATTGGAAAACATGAAAAA+TGG + chr5_1:4606239-4606258 None:intergenic 20.0%
!!! TTTTCCAATTTATATCTGAA+TGG - chr5_1:4606248-4606267 Msa0712800:CDS 20.0%
!! AATTTGTCTGTTGAAAAATA+AGG - chr5_1:4606422-4606441 Msa0712800:CDS 20.0%
!!! TTTTCACACAATAATTTTTC+TGG + chr5_1:4606737-4606756 None:intergenic 20.0%
!! AAAAATTATTGTGTGAAAAG+TGG - chr5_1:4606738-4606757 Msa0712800:CDS 20.0%
!! AATTATTAGATGAGATAATG+TGG + chr5_1:4605268-4605287 None:intergenic 20.0%
!!! TTTGATTATCATTTTTTCAG+TGG - chr5_1:4605405-4605424 Msa0712800:intron 20.0%
!! TGAATAATCAAATGTATAGA+TGG + chr5_1:4605650-4605669 None:intergenic 20.0%
!!! TTTTTTTCCTATACTTTTGA+AGG - chr5_1:4605683-4605702 Msa0712800:CDS 20.0%
!!! TTTTTTCCTATACTTTTGAA+GGG - chr5_1:4605684-4605703 Msa0712800:CDS 20.0%
!!! AAGTTTTAACTGATAAATGA+TGG - chr5_1:4605995-4606014 Msa0712800:intron 20.0%
!! AAATTGGAAAACATGAAAAA+TGG + chr5_1:4606239-4606258 None:intergenic 20.0%
!!! TTTTCCAATTTATATCTGAA+TGG - chr5_1:4606248-4606267 Msa0712800:CDS 20.0%
!! AATTTGTCTGTTGAAAAATA+AGG - chr5_1:4606422-4606441 Msa0712800:CDS 20.0%
!!! TTTTCACACAATAATTTTTC+TGG + chr5_1:4606737-4606756 None:intergenic 20.0%
!! AAAAATTATTGTGTGAAAAG+TGG - chr5_1:4606738-4606757 Msa0712800:CDS 20.0%
! AAATCAAAGATGAGTTCAAT+GGG + chr5_1:4605312-4605331 None:intergenic 25.0%
!!! AAAAGTACTCTTAATTGACA+TGG - chr5_1:4605360-4605379 Msa0712800:intron 25.0%
! AAATAATATACTCCAGATCA+TGG + chr5_1:4605477-4605496 None:intergenic 25.0%
!!! TATTATTTTGAAGACTGTGA+AGG - chr5_1:4605489-4605508 Msa0712800:three_prime_UTR 25.0%
! AAAAACAATGTCAAGAAGAA+AGG + chr5_1:4605604-4605623 None:intergenic 25.0%
!!! TTTTTCCTATACTTTTGAAG+GGG - chr5_1:4605685-4605704 Msa0712800:CDS 25.0%
! AATGCATGCAATGAAATATT+TGG + chr5_1:4605771-4605790 None:intergenic 25.0%
! AACTCCATTCAGATATAAAT+TGG + chr5_1:4606255-4606274 None:intergenic 25.0%
! ATAAAAATGAGTAGCATCAA+TGG - chr5_1:4606636-4606655 Msa0712800:intron 25.0%
! ATAAAAATTCAAGCTTGTCT+TGG - chr5_1:4606873-4606892 Msa0712800:CDS 25.0%
! AAATCAAAGATGAGTTCAAT+GGG + chr5_1:4605312-4605331 None:intergenic 25.0%
!!! AAAAGTACTCTTAATTGACA+TGG - chr5_1:4605360-4605379 Msa0712800:intron 25.0%
! AAATAATATACTCCAGATCA+TGG + chr5_1:4605477-4605496 None:intergenic 25.0%
!!! TATTATTTTGAAGACTGTGA+AGG - chr5_1:4605489-4605508 Msa0712800:three_prime_UTR 25.0%
! AAAAACAATGTCAAGAAGAA+AGG + chr5_1:4605604-4605623 None:intergenic 25.0%
!!! TTTTTCCTATACTTTTGAAG+GGG - chr5_1:4605685-4605704 Msa0712800:CDS 25.0%
! AATGCATGCAATGAAATATT+TGG + chr5_1:4605771-4605790 None:intergenic 25.0%
! AACTCCATTCAGATATAAAT+TGG + chr5_1:4606255-4606274 None:intergenic 25.0%
! ATAAAAATGAGTAGCATCAA+TGG - chr5_1:4606636-4606655 Msa0712800:intron 25.0%
! ATAAAAATTCAAGCTTGTCT+TGG - chr5_1:4606873-4606892 Msa0712800:CDS 25.0%
!! AGTTCAATGGGTTTTTAAAG+GGG + chr5_1:4605300-4605319 None:intergenic 30.0%
!! GAGTTCAATGGGTTTTTAAA+GGG + chr5_1:4605301-4605320 None:intergenic 30.0%
!! TGAGTTCAATGGGTTTTTAA+AGG + chr5_1:4605302-4605321 None:intergenic 30.0%
GAAATCAAAGATGAGTTCAA+TGG + chr5_1:4605313-4605332 None:intergenic 30.0%
!!! ATTTTTTCAGTGGTTTCTAC+AGG - chr5_1:4605415-4605434 Msa0712800:intron 30.0%
TCAAATGTATAGATGGTTTG+CGG + chr5_1:4605643-4605662 None:intergenic 30.0%
AGGAAAAAACAAAGCAGAAA+AGG - chr5_1:4605737-4605756 Msa0712800:CDS 30.0%
AAAAACAAAGCAGAAAAGGA+TGG - chr5_1:4605741-4605760 Msa0712800:CDS 30.0%
TCTATGTATATTCTACAGTC+TGG - chr5_1:4606022-4606041 Msa0712800:intron 30.0%
AGTTGTGATATGTTGAATGT+TGG + chr5_1:4606127-4606146 None:intergenic 30.0%
!!! TAAAGTTTTGGATTCTGTTC+TGG + chr5_1:4606344-4606363 None:intergenic 30.0%
! CATGTGTAGCATTAAAGTTT+TGG + chr5_1:4606356-4606375 None:intergenic 30.0%
CAAACGATTGATGTAATGAA+GGG + chr5_1:4606386-4606405 None:intergenic 30.0%
AAAAATAAGGCCAAAAATGC+TGG - chr5_1:4606435-4606454 Msa0712800:CDS 30.0%
!! TTATCGAAATTTGTTGCAGA+AGG + chr5_1:4606474-4606493 None:intergenic 30.0%
AAACTTAGAAACCAATTGCT+TGG + chr5_1:4606571-4606590 None:intergenic 30.0%
!! ACTCATTTTTATCATGGACT+TGG + chr5_1:4606628-4606647 None:intergenic 30.0%
!! GATGCTACTCATTTTTATCA+TGG + chr5_1:4606634-4606653 None:intergenic 30.0%
CTCAAGTAACAAGTCAAAAA+AGG - chr5_1:4606935-4606954 Msa0712800:five_prime_UTR 30.0%
! TGGTGATTTTCGATTTTTCA+TGG - chr5_1:4606991-4607010 Msa0712800:five_prime_UTR 30.0%
! GGTGATTTTCGATTTTTCAT+GGG - chr5_1:4606992-4607011 Msa0712800:five_prime_UTR 30.0%
CATGGGAAAAAGTAAGATAT+CGG - chr5_1:4607009-4607028 Msa0712800:five_prime_UTR 30.0%
!! AGTTCAATGGGTTTTTAAAG+GGG + chr5_1:4605300-4605319 None:intergenic 30.0%
!! GAGTTCAATGGGTTTTTAAA+GGG + chr5_1:4605301-4605320 None:intergenic 30.0%
!! TGAGTTCAATGGGTTTTTAA+AGG + chr5_1:4605302-4605321 None:intergenic 30.0%
GAAATCAAAGATGAGTTCAA+TGG + chr5_1:4605313-4605332 None:intergenic 30.0%
!!! ATTTTTTCAGTGGTTTCTAC+AGG - chr5_1:4605415-4605434 Msa0712800:intron 30.0%
TCAAATGTATAGATGGTTTG+CGG + chr5_1:4605643-4605662 None:intergenic 30.0%
AGGAAAAAACAAAGCAGAAA+AGG - chr5_1:4605737-4605756 Msa0712800:CDS 30.0%
AAAAACAAAGCAGAAAAGGA+TGG - chr5_1:4605741-4605760 Msa0712800:CDS 30.0%
TCTATGTATATTCTACAGTC+TGG - chr5_1:4606022-4606041 Msa0712800:intron 30.0%
AGTTGTGATATGTTGAATGT+TGG + chr5_1:4606127-4606146 None:intergenic 30.0%
!!! TAAAGTTTTGGATTCTGTTC+TGG + chr5_1:4606344-4606363 None:intergenic 30.0%
! CATGTGTAGCATTAAAGTTT+TGG + chr5_1:4606356-4606375 None:intergenic 30.0%
CAAACGATTGATGTAATGAA+GGG + chr5_1:4606386-4606405 None:intergenic 30.0%
AAAAATAAGGCCAAAAATGC+TGG - chr5_1:4606435-4606454 Msa0712800:CDS 30.0%
!! TTATCGAAATTTGTTGCAGA+AGG + chr5_1:4606474-4606493 None:intergenic 30.0%
AAACTTAGAAACCAATTGCT+TGG + chr5_1:4606571-4606590 None:intergenic 30.0%
!! ACTCATTTTTATCATGGACT+TGG + chr5_1:4606628-4606647 None:intergenic 30.0%
!! GATGCTACTCATTTTTATCA+TGG + chr5_1:4606634-4606653 None:intergenic 30.0%
CTCAAGTAACAAGTCAAAAA+AGG - chr5_1:4606935-4606954 Msa0712800:five_prime_UTR 30.0%
! TGGTGATTTTCGATTTTTCA+TGG - chr5_1:4606991-4607010 Msa0712800:five_prime_UTR 30.0%
! GGTGATTTTCGATTTTTCAT+GGG - chr5_1:4606992-4607011 Msa0712800:five_prime_UTR 30.0%
CATGGGAAAAAGTAAGATAT+CGG - chr5_1:4607009-4607028 Msa0712800:five_prime_UTR 30.0%
!!! TTTTTAGCTGTTGCTATCTG+TGG + chr5_1:4605335-4605354 None:intergenic 35.0%
TGATAAATCATGCCATGATC+TGG - chr5_1:4605462-4605481 Msa0712800:three_prime_UTR 35.0%
! CAAATGTATAGATGGTTTGC+GGG + chr5_1:4605642-4605661 None:intergenic 35.0%
GCATGCAATGAAATATTTGG+CGG + chr5_1:4605768-4605787 None:intergenic 35.0%
! GTCTCAATGAAAGAGAGTTT+TGG + chr5_1:4605918-4605937 None:intergenic 35.0%
ATGTATATTCTACAGTCTGG+AGG - chr5_1:4606025-4606044 Msa0712800:intron 35.0%
!!! CCTTTTGGAACATTCCATTT+AGG + chr5_1:4606052-4606071 None:intergenic 35.0%
CCTAAATGGAATGTTCCAAA+AGG - chr5_1:4606049-4606068 Msa0712800:intron 35.0%
GTTCCAAAAGGAAGAAAAGA+TGG - chr5_1:4606061-4606080 Msa0712800:intron 35.0%
! CTTCCATCTTTTCTTCCTTT+TGG + chr5_1:4606067-4606086 None:intergenic 35.0%
AAAAGATGGAAGAACATCCA+AGG - chr5_1:4606075-4606094 Msa0712800:intron 35.0%
!! TGGTAATTGTCTTGTTTCAC+TGG + chr5_1:4606101-4606120 None:intergenic 35.0%
!!! ACATGTTTTGACCCATATGT+AGG - chr5_1:4606282-4606301 Msa0712800:intron 35.0%
GCAAACGATTGATGTAATGA+AGG + chr5_1:4606387-4606406 None:intergenic 35.0%
!! AAGAAAACAAGCCTTGTTGT+TGG + chr5_1:4606518-4606537 None:intergenic 35.0%
! AAACCAATTGCTTGGTCTTT+GGG + chr5_1:4606563-4606582 None:intergenic 35.0%
AAAATGAGTAGCATCAATGG+TGG - chr5_1:4606639-4606658 Msa0712800:intron 35.0%
AAATGAGTAGCATCAATGGT+GGG - chr5_1:4606640-4606659 Msa0712800:intron 35.0%
!! GGTGAATCACATTTTGAAGA+TGG - chr5_1:4606759-4606778 Msa0712800:CDS 35.0%
!!! TTTTTAGCTGTTGCTATCTG+TGG + chr5_1:4605335-4605354 None:intergenic 35.0%
TGATAAATCATGCCATGATC+TGG - chr5_1:4605462-4605481 Msa0712800:three_prime_UTR 35.0%
! CAAATGTATAGATGGTTTGC+GGG + chr5_1:4605642-4605661 None:intergenic 35.0%
GCATGCAATGAAATATTTGG+CGG + chr5_1:4605768-4605787 None:intergenic 35.0%
! GTCTCAATGAAAGAGAGTTT+TGG + chr5_1:4605918-4605937 None:intergenic 35.0%
ATGTATATTCTACAGTCTGG+AGG - chr5_1:4606025-4606044 Msa0712800:intron 35.0%
!!! CCTTTTGGAACATTCCATTT+AGG + chr5_1:4606052-4606071 None:intergenic 35.0%
CCTAAATGGAATGTTCCAAA+AGG - chr5_1:4606049-4606068 Msa0712800:intron 35.0%
GTTCCAAAAGGAAGAAAAGA+TGG - chr5_1:4606061-4606080 Msa0712800:intron 35.0%
! CTTCCATCTTTTCTTCCTTT+TGG + chr5_1:4606067-4606086 None:intergenic 35.0%
AAAAGATGGAAGAACATCCA+AGG - chr5_1:4606075-4606094 Msa0712800:intron 35.0%
!! TGGTAATTGTCTTGTTTCAC+TGG + chr5_1:4606101-4606120 None:intergenic 35.0%
!!! ACATGTTTTGACCCATATGT+AGG - chr5_1:4606282-4606301 Msa0712800:intron 35.0%
GCAAACGATTGATGTAATGA+AGG + chr5_1:4606387-4606406 None:intergenic 35.0%
!! AAGAAAACAAGCCTTGTTGT+TGG + chr5_1:4606518-4606537 None:intergenic 35.0%
! AAACCAATTGCTTGGTCTTT+GGG + chr5_1:4606563-4606582 None:intergenic 35.0%
AAAATGAGTAGCATCAATGG+TGG - chr5_1:4606639-4606658 Msa0712800:intron 35.0%
AAATGAGTAGCATCAATGGT+GGG - chr5_1:4606640-4606659 Msa0712800:intron 35.0%
!! GGTGAATCACATTTTGAAGA+TGG - chr5_1:4606759-4606778 Msa0712800:CDS 35.0%
CTTAATTGACATGGCTGTCA+TGG - chr5_1:4605369-4605388 Msa0712800:intron 40.0%
! AGCAATCATGGAAGTGCATT+CGG + chr5_1:4605555-4605574 None:intergenic 40.0%
ATACTCGAACGAAGCAATCA+TGG + chr5_1:4605567-4605586 None:intergenic 40.0%
! TATAGATGGTTTGCGGGAAA+AGG + chr5_1:4605636-4605655 None:intergenic 40.0%
! TCACACCCCTTCAAAAGTAT+AGG + chr5_1:4605693-4605712 None:intergenic 40.0%
! TCTGTGCTGCTAAATTCGAA+AGG - chr5_1:4605717-4605736 Msa0712800:CDS 40.0%
GATATGTTGAATGTTGGTGC+TGG + chr5_1:4606121-4606140 None:intergenic 40.0%
!!! TGTTTTGACCCATATGTAGG+AGG - chr5_1:4606285-4606304 Msa0712800:intron 40.0%
!! GTTTTGACCCATATGTAGGA+GGG - chr5_1:4606286-4606305 Msa0712800:intron 40.0%
CTTTAATGCTACACATGACG+TGG - chr5_1:4606359-4606378 Msa0712800:intron 40.0%
! AAGTTGATCCTCCAACAACA+AGG - chr5_1:4606504-4606523 Msa0712800:CDS 40.0%
!! AAAACAAGCCTTGTTGTTGG+AGG + chr5_1:4606515-4606534 None:intergenic 40.0%
!! AGGCTTGTTTTCTTCTGATC+AGG - chr5_1:4606524-4606543 Msa0712800:CDS 40.0%
! GAAACCAATTGCTTGGTCTT+TGG + chr5_1:4606564-4606583 None:intergenic 40.0%
! AAAGAAAGCCTTTTGTGAGG+CGG + chr5_1:4606595-4606614 None:intergenic 40.0%
! GTCAAAGAAAGCCTTTTGTG+AGG + chr5_1:4606598-4606617 None:intergenic 40.0%
! AATCACCACTTTGAGAAGCA+GGG + chr5_1:4606979-4606998 None:intergenic 40.0%
! AAATCACCACTTTGAGAAGC+AGG + chr5_1:4606980-4606999 None:intergenic 40.0%
! TATCGGTCTTGTCAAGAACA+TGG - chr5_1:4607026-4607045 Msa0712800:five_prime_UTR 40.0%
AAGAACATGGCCAACAAATG+TGG - chr5_1:4607039-4607058 Msa0712800:five_prime_UTR 40.0%
CTTAATTGACATGGCTGTCA+TGG - chr5_1:4605369-4605388 Msa0712800:intron 40.0%
! AGCAATCATGGAAGTGCATT+CGG + chr5_1:4605555-4605574 None:intergenic 40.0%
ATACTCGAACGAAGCAATCA+TGG + chr5_1:4605567-4605586 None:intergenic 40.0%
! TATAGATGGTTTGCGGGAAA+AGG + chr5_1:4605636-4605655 None:intergenic 40.0%
! TCACACCCCTTCAAAAGTAT+AGG + chr5_1:4605693-4605712 None:intergenic 40.0%
! TCTGTGCTGCTAAATTCGAA+AGG - chr5_1:4605717-4605736 Msa0712800:CDS 40.0%
GATATGTTGAATGTTGGTGC+TGG + chr5_1:4606121-4606140 None:intergenic 40.0%
!!! TGTTTTGACCCATATGTAGG+AGG - chr5_1:4606285-4606304 Msa0712800:intron 40.0%
!! GTTTTGACCCATATGTAGGA+GGG - chr5_1:4606286-4606305 Msa0712800:intron 40.0%
CTTTAATGCTACACATGACG+TGG - chr5_1:4606359-4606378 Msa0712800:intron 40.0%
! AAGTTGATCCTCCAACAACA+AGG - chr5_1:4606504-4606523 Msa0712800:CDS 40.0%
!! AAAACAAGCCTTGTTGTTGG+AGG + chr5_1:4606515-4606534 None:intergenic 40.0%
!! AGGCTTGTTTTCTTCTGATC+AGG - chr5_1:4606524-4606543 Msa0712800:CDS 40.0%
! GAAACCAATTGCTTGGTCTT+TGG + chr5_1:4606564-4606583 None:intergenic 40.0%
! AAAGAAAGCCTTTTGTGAGG+CGG + chr5_1:4606595-4606614 None:intergenic 40.0%
! GTCAAAGAAAGCCTTTTGTG+AGG + chr5_1:4606598-4606617 None:intergenic 40.0%
! AATCACCACTTTGAGAAGCA+GGG + chr5_1:4606979-4606998 None:intergenic 40.0%
! AAATCACCACTTTGAGAAGC+AGG + chr5_1:4606980-4606999 None:intergenic 40.0%
! TATCGGTCTTGTCAAGAACA+TGG - chr5_1:4607026-4607045 Msa0712800:five_prime_UTR 40.0%
TGTGAAGGATGCTACTGCTA+GGG - chr5_1:4605504-4605523 Msa0712800:three_prime_UTR 45.0%
GCATTAGAAGCTAAATGCCC+TGG - chr5_1:4605816-4605835 Msa0712800:CDS 45.0%
TACAGTCTGGAGGACCTAAA+TGG - chr5_1:4606035-4606054 Msa0712800:intron 45.0%
!! TTGTCTTGTTTCACTGGCCT+TGG + chr5_1:4606095-4606114 None:intergenic 45.0%
!! CTCTCAAAGAGCATTGTCAG+TGG - chr5_1:4606159-4606178 Msa0712800:CDS 45.0%
AGGTATGCCCTCCTACATAT+GGG + chr5_1:4606296-4606315 None:intergenic 45.0%
AAGGTATGCCCTCCTACATA+TGG + chr5_1:4606297-4606316 None:intergenic 45.0%
! TATGTAGGAGGGCATACCTT+AGG - chr5_1:4606297-4606316 Msa0712800:intron 45.0%
!! CATAGTGGTGCCAGCATTTT+TGG + chr5_1:4606448-4606467 None:intergenic 45.0%
CAAAAATGCTGGCACCACTA+TGG - chr5_1:4606446-4606465 Msa0712800:CDS 45.0%
TGTTGCAGAAGGATCCATAG+TGG + chr5_1:4606463-4606482 None:intergenic 45.0%
TAAGTTTGCCGCCTCACAAA+AGG - chr5_1:4606584-4606603 Msa0712800:CDS 45.0%
!! TCAATGGTGGGCAAGAAGTT+AGG - chr5_1:4606652-4606671 Msa0712800:intron 45.0%
TGTGAAGGATGCTACTGCTA+GGG - chr5_1:4605504-4605523 Msa0712800:three_prime_UTR 45.0%
GCATTAGAAGCTAAATGCCC+TGG - chr5_1:4605816-4605835 Msa0712800:CDS 45.0%
TACAGTCTGGAGGACCTAAA+TGG - chr5_1:4606035-4606054 Msa0712800:intron 45.0%
!! TTGTCTTGTTTCACTGGCCT+TGG + chr5_1:4606095-4606114 None:intergenic 45.0%
!! CTCTCAAAGAGCATTGTCAG+TGG - chr5_1:4606159-4606178 Msa0712800:CDS 45.0%
AGGTATGCCCTCCTACATAT+GGG + chr5_1:4606296-4606315 None:intergenic 45.0%
AAGGTATGCCCTCCTACATA+TGG + chr5_1:4606297-4606316 None:intergenic 45.0%
! TATGTAGGAGGGCATACCTT+AGG - chr5_1:4606297-4606316 Msa0712800:intron 45.0%
!! CATAGTGGTGCCAGCATTTT+TGG + chr5_1:4606448-4606467 None:intergenic 45.0%
CAAAAATGCTGGCACCACTA+TGG - chr5_1:4606446-4606465 Msa0712800:CDS 45.0%
TGTTGCAGAAGGATCCATAG+TGG + chr5_1:4606463-4606482 None:intergenic 45.0%
TAAGTTTGCCGCCTCACAAA+AGG - chr5_1:4606584-4606603 Msa0712800:CDS 45.0%
!! TCAATGGTGGGCAAGAAGTT+AGG - chr5_1:4606652-4606671 Msa0712800:intron 45.0%
CTGTGAAGGATGCTACTGCT+AGG - chr5_1:4605503-4605522 Msa0712800:three_prime_UTR 50.0%
CAGCACAAGAAACTACGCCA+GGG + chr5_1:4605836-4605855 None:intergenic 50.0%
TCAGCACAAGAAACTACGCC+AGG + chr5_1:4605837-4605856 None:intergenic 50.0%
ATATTCTCGCTCTCGCAGCA+AGG - chr5_1:4605856-4605875 Msa0712800:CDS 50.0%
TATTCTCGCTCTCGCAGCAA+GGG - chr5_1:4605857-4605876 Msa0712800:CDS 50.0%
AGCAAGGGACGCAGTTTATC+TGG - chr5_1:4605872-4605891 Msa0712800:CDS 50.0%
AGCATTGTCAGTGGAAGACC+TGG - chr5_1:4606168-4606187 Msa0712800:CDS 50.0%
GAATACCTGACAGAGCTACC+AGG + chr5_1:4606189-4606208 None:intergenic 50.0%
TGAGCAGTGAGAGAAGCCTA+AGG + chr5_1:4606316-4606335 None:intergenic 50.0%
CAGCCCAAAGACCAAGCAAT+TGG - chr5_1:4606557-4606576 Msa0712800:CDS 50.0%
! TGGTGGGCAAGAAGTTAGGA+AGG - chr5_1:4606656-4606675 Msa0712800:intron 50.0%
CTGTGAAGGATGCTACTGCT+AGG - chr5_1:4605503-4605522 Msa0712800:three_prime_UTR 50.0%
CAGCACAAGAAACTACGCCA+GGG + chr5_1:4605836-4605855 None:intergenic 50.0%
TCAGCACAAGAAACTACGCC+AGG + chr5_1:4605837-4605856 None:intergenic 50.0%
ATATTCTCGCTCTCGCAGCA+AGG - chr5_1:4605856-4605875 Msa0712800:CDS 50.0%
TATTCTCGCTCTCGCAGCAA+GGG - chr5_1:4605857-4605876 Msa0712800:CDS 50.0%
AGCAAGGGACGCAGTTTATC+TGG - chr5_1:4605872-4605891 Msa0712800:CDS 50.0%
AGCATTGTCAGTGGAAGACC+TGG - chr5_1:4606168-4606187 Msa0712800:CDS 50.0%
GAATACCTGACAGAGCTACC+AGG + chr5_1:4606189-4606208 None:intergenic 50.0%
TGAGCAGTGAGAGAAGCCTA+AGG + chr5_1:4606316-4606335 None:intergenic 50.0%
CAGCCCAAAGACCAAGCAAT+TGG - chr5_1:4606557-4606576 Msa0712800:CDS 50.0%
! TGGTGGGCAAGAAGTTAGGA+AGG - chr5_1:4606656-4606675 Msa0712800:intron 50.0%
!! TGCATTCGGAGAAGTGCTGC+TGG + chr5_1:4605541-4605560 None:intergenic 55.0%
! GAAGACCTGGTAGCTCTGTC+AGG - chr5_1:4606181-4606200 Msa0712800:CDS 55.0%
! CTTTGAGAAGCAGGGCTCGT+GGG + chr5_1:4606971-4606990 None:intergenic 55.0%
! ACTTTGAGAAGCAGGGCTCG+TGG + chr5_1:4606972-4606991 None:intergenic 55.0%
ACGAGCCCTGCTTCTCAAAG+TGG - chr5_1:4606971-4606990 Msa0712800:five_prime_UTR 55.0%
!! TGCATTCGGAGAAGTGCTGC+TGG + chr5_1:4605541-4605560 None:intergenic 55.0%
! GAAGACCTGGTAGCTCTGTC+AGG - chr5_1:4606181-4606200 Msa0712800:CDS 55.0%
! CTTTGAGAAGCAGGGCTCGT+GGG + chr5_1:4606971-4606990 None:intergenic 55.0%
! ACTTTGAGAAGCAGGGCTCG+TGG + chr5_1:4606972-4606991 None:intergenic 55.0%
ACGAGCCCTGCTTCTCAAAG+TGG - chr5_1:4606971-4606990 Msa0712800:five_prime_UTR 55.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 4605252 4607058 4605252 ID=Msa0712800;Name=Msa0712800
chr5_1 mRNA 4605252 4607058 4605252 ID=Msa0712800-mRNA-1;Parent=Msa0712800;Name=Msa0712800-mRNA-1;_AED=0.12;_eAED=0.12;_QI=127|1|1|1|0.75|0.6|5|293|316
chr5_1 exon 4605252 4605369 4605252 ID=Msa0712800-mRNA-1:exon:1957;Parent=Msa0712800-mRNA-1
chr5_1 exon 4605437 4606006 4605437 ID=Msa0712800-mRNA-1:exon:1956;Parent=Msa0712800-mRNA-1
chr5_1 exon 4606108 4606270 4606108 ID=Msa0712800-mRNA-1:exon:1955;Parent=Msa0712800-mRNA-1
chr5_1 exon 4606417 4606605 4606417 ID=Msa0712800-mRNA-1:exon:1954;Parent=Msa0712800-mRNA-1
chr5_1 exon 4606728 4607058 4606728 ID=Msa0712800-mRNA-1:exon:1953;Parent=Msa0712800-mRNA-1
chr5_1 five_prime_UTR 4606932 4607058 4606932 ID=Msa0712800-mRNA-1:five_prime_utr;Parent=Msa0712800-mRNA-1
chr5_1 CDS 4606728 4606931 4606728 ID=Msa0712800-mRNA-1:cds;Parent=Msa0712800-mRNA-1
chr5_1 CDS 4606417 4606605 4606417 ID=Msa0712800-mRNA-1:cds;Parent=Msa0712800-mRNA-1
chr5_1 CDS 4606108 4606270 4606108 ID=Msa0712800-mRNA-1:cds;Parent=Msa0712800-mRNA-1
chr5_1 CDS 4605612 4606006 4605612 ID=Msa0712800-mRNA-1:cds;Parent=Msa0712800-mRNA-1
chr5_1 three_prime_UTR 4605437 4605611 4605437 ID=Msa0712800-mRNA-1:three_prime_utr;Parent=Msa0712800-mRNA-1
chr5_1 three_prime_UTR 4605252 4605369 4605252 ID=Msa0712800-mRNA-1:three_prime_utr;Parent=Msa0712800-mRNA-1
Gene Sequence

>Msa0712800

ATGGCTGTCATGGTTGCATTCTTGAATTTGATTATCATTTTTTCAGTGGTTTCTACAGGAAAATCACTCAGCTTAAACTACTATGATAAATCATGCCATGATCTGGAGTATATTATTTTGAAGACTGTGAAGGATGCTACTGCTAGGGACAAAACTGTTCCAGCAGCACTTCTCCGAATGCACTTCCATGATTGCTTCGTTCGAGGGTGTGATGCATCTGTGCTGCTAAATTCGAAAGGAAAAAACAAAGCAGAAAAGGATGGACCGCCAAATATTTCATTGCATGCATTCTATGTCATTGATGAAGCAAAGAAAGCATTAGAAGCTAAATGCCCTGGCGTAGTTTCTTGTGCTGATATTCTCGCTCTCGCAGCAAGGGACGCAGTTTATCTGTCTGGAGGACCTAAATGGAATGTTCCAAAAGGAAGAAAAGATGGAAGAACATCCAAGGCCAGTGAAACAAGACAATTACCAGCACCAACATTCAACATATCACAACTGCAGCAAAGCTTCTCTCAAAGAGCATTGTCAGTGGAAGACCTGGTAGCTCTGTCAGGAGGGCATACCTTAGGCTTCTCTCACTGCTCATCTTTCCAGAACAGAATCCAAAACTTTAATGCTACACATGACGTGGACCCTTCATTACATCAATCGTTTGCAACAAAACTAAAATCAATTTGTCTGTTGAAAAATAAGGCCAAAAATGCTGGCACCACTATGGATCCTTCTGCAACAAATTTCGATAATACATATTACAAGTTGATCCTCCAACAACAAGGCTTGTTTTCTTCTGATCAGGCTTTGCTTGACAGCCCAAAGACCAAGCAATTGGTTTCTAAGTTTGCCGCCTCACAAAAGGCTTTCTTTGACGCTTTTGCCAAGTCCATGATAAAAATGAGTAGCATCAATGGTGGGCAAGAAGTTAGGAAGGACTGCAGAAAGATCAATTAG
Protein sequence

>Msa0712800

MAVMVAFLNLIIIFSVVSTGKSLSLNYYDKSCHDLEYIILKTVKDATARDKTVPAALLRMHFHDCFVRGCDASVLLNSKGKNKAEKDGPPNISLHAFYVIDEAKKALEAKCPGVVSCADILALAARDAVYLSGGPKWNVPKGRKDGRTSKASETRQLPAPTFNISQLQQSFSQRALSVEDLVALSGGHTLGFSHCSSFQNRIQNFNATHDVDPSLHQSFATKLKSICLLKNKAKNAGTTMDPSATNFDNTYYKLILQQQGLFSSDQALLDSPKTKQLVSKFAASQKAFFDAFAKSMIKMSSINGGQEVRKDCRKIN*